RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RNF112 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000010086

Ensembl transcript IDs: ENSMUST00000054927.14, ENSMUST00000060255.14, ENSMUST00000102661.4

Found 314 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCCAGAAGTCTCTTTAGAAATCTCCATCCCCCGAGAGAGGCCCCCTaGCCACAAGCTTTCTGGAGGCTTGGCGTTCAGAGGGCTGCATCA +
Preference number: 1 (lower is better)
Translates to: PRSLFRNLHPPREAP*PQAFWRLGVQRAAS
Trigger: TGATGCAGCCCTCTGAACGCCAAGCCTCCAGAAAGCTTGTGGGCAGGGGGCCTCTCTCGGGGGATGGAGATTTCTAAAGAGACTTCTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR CCA 90 bp GGGGCAAATTTCCAGCCCAGGCCCTCCAGGGAAATAAACTGGAACTaGGTAGAGGAGGTGGGGCCTTATGTGGTGGGAGATCCTAGGTTC +
Preference number: 1 (lower is better)
Translates to: GANFQPRPSREINWN*VEEVGPYVVGDPRF
Trigger: GAACCTAGGATCTCCCACCACATAAGGCCCCACCTCCTCTACCCAGTTCCAGTTTATTTCCCTGGAGGGCCTGGGCTGGAAATTTGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR TCA 90 bp GGGCATTCAACAAGGCCAGTATATACGTGGTCCCCTCTGAGTCCCTaGTGTCCGCACCCTTCCTACTGCCTTTCACGTATTTCACGCTTC +
Preference number: 1 (lower is better)
Translates to: GHSTRPVYTWSPLSP*CPHPSYCLSRISRF
Trigger: GAAGCGTGAAATACGTGAAAGGCAGTAGGAAGGGTGCGGACATCAGGGACTCAGAGGGGACCACGTATATACTGGCCTTGTTGAATGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR GCA 90 bp TCCTGCACTTTCCCTTCCCACACTTTGGCAGAACCTGGCACGGACTaGTTTAGCACAGAATGCAATCGGAGGTGTGGTTCTTTGGCATGT +
Preference number: 1 (lower is better)
Translates to: SCTFPSHTLAEPGTD*FSTECNRRCGSLAC
Trigger: ACATGCCAAAGAACCACACCTCCGATTGCATTCTGTGCTAAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR CCA 90 bp GTTAAAAGACGGAGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTaGCAGAACCTGGCACGGACTGCTTTAGCACAGAATGCAATCGGA +
Preference number: 1 (lower is better)
Translates to: VKRRSSFPALSLPTL*QNLARTALAQNAIG
Trigger: TCCGATTGCATTCTGTGCTAAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCTCCGTCTTTTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR CCA 90 bp GCACGGACTGCTTTAGCACAGAATGCAATCGGAGGTGTGGTTCTTTaGCATGTAATCTGTGTTGATCCATCCAAATGGGCTTGGCACAGG +
Preference number: 1 (lower is better)
Translates to: ARTALAQNAIGGVVL*HVICVDPSKWAWHR
Trigger: CCTGTGCCAAGCCCATTTGGATGGATCAACACAGATTACATGCCAAAGAACCACACCTCCGATTGCATTCTGTGCTAAAGCAGTCCGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR-3UTR TCA 90 bp TCCCACACTTTGGCAGAACCTGGCACGGACTGCTTTAGCACAGAATGCAATCGGATCTGGACACCCAACTaGAGAGCAGGGAGGCCAGCC +
Preference number: 2 (lower is better)
Translates to: SHTLAEPGTDCFSTECNRIWTPN*RAGRPA
Trigger: GGCTGGCCTCCCTGCTCTTCAGTTGGGTGTCCAGAT...CCGATTGCATTCTGTGCTAAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR-3UTR CCA 90 bp GACACCCAACTGAAGAGCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTAGCCAGTGTTTGACATaGGGCATTCAACAAGGCCAG +
Preference number: 2 (lower is better)
Translates to: DTQLKSREASQAWPSGAVSQCLT*GIQQGQ
Trigger: CTGGCCTTGTTGAATGCCCCATGTCAAACACTGGCT...AACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGCTCTTCAGTTGGGTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR-3UTR TCA 90 bp GTGGGAGATCCTAGGTTCCAGAGAGTAGCAATTATCCAGAGCCAGAAACAGGCCTCCCCTCTGAGTCCCTaGTGTCCGCACCCTTCCTAC +
Preference number: 2 (lower is better)
Translates to: VGDPRFQRVAIIQSQKQASPLSP*CPHPSY
Trigger: GTAGGAAGGGTGCGGACATCAGGGACTCAGAGGGGA...GGCCTGTTTCTGGCTCTGGATAATTGCTACTCTCTGGAACCTAGGATCTCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR-3UTR CCA 90 bp GACACCCAACTGAAGAGCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTAAACGAATGGGGTTCTaGATCCAGGGGCAAATTTCC +
Preference number: 2 (lower is better)
Translates to: DTQLKSREASQAWPSGAVKRMGF*IQGQIS
Trigger: GGAAATTTGCCCCTGGATCCAGAACCCCATTCGTTT...AACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGCTCTTCAGTTGGGTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR-3UTR GCA 90 bp AGCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACTATCATCCCCATCCCTaGTCTGTGACCCCTCCTTTT +
Preference number: 2 (lower is better)
Translates to: SREASQAWPSGAVLETSHYHPHP*SVTPPF
Trigger: AAAAGGAGGGGTCACAGAGCAGGGATGGGGATGATA...GTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR-3UTR CCA 90 bp AGCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACAGCCAGTGTTTGACATaGGGCATTCAACAAGGCCAG +
Preference number: 2 (lower is better)
Translates to: SREASQAWPSGAVLETSHSQCLT*GIQQGQ
Trigger: CTGGCCTTGTTGAATGCCCCATGTCAAACACTGGCT...GTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR-3UTR CCA 90 bp ATGTTAAAAGACGGAGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAAGGACTGCAGGAGGCTaGGGTACAGGGCGGTTCAGG +
Preference number: 2 (lower is better)
Translates to: MLKDGARFLHFPFPHFGRRTAGG*GTGRFR
Trigger: CCTGAACCGCCCTGTACCCCAGCCTCCTGCAGTCCT...TCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCTCCGTCTTTTAACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR-3UTR TCA 90 bp AGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAACCTGGCACGGACTAGCTCAGCCAGTGTTTaGCATGGGGCATTCAACAAG +
Preference number: 2 (lower is better)
Translates to: SSFPALSLPTLWQNLARTSSASV*HGAFNK
Trigger: CTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCT...AGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR-3UTR CCA 90 bp AGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAACCTGGCACGGACTAGCCAGTGTTTGACATaGGGCATTCAACAAGGCCAG +
Preference number: 2 (lower is better)
Translates to: SSFPALSLPTLWQNLARTSQCLT*GIQQGQ
Trigger: CTGGCCTTGTTGAATGCCCCATGTCAAACACTGGCT...AGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR-3UTR TCA 90 bp GCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAATTATAGCTCCCATCCCTGCTCTGTaGCCCCTCCTTTTTCTTCCC +
Preference number: 2 (lower is better)
Translates to: AWPSGAVLETSHHSRIIAPIPAL*PLLFLP
Trigger: GGGAAGAAAAAGGAGGGGTCACAGAGCAGGGATGGG...AGCTATAATTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR-3UTR GCA 90 bp TCCCACACTTTGGCAGAACCTGGCACGGACTGCTTTAGCACAGAATGCAATCGGTATCATCCCCATCCCTaGTCTGTGACCCCTCCTTTT +
Preference number: 2 (lower is better)
Translates to: SHTLAEPGTDCFSTECNRYHPHP*SVTPPF
Trigger: AAAAGGAGGGGTCACAGAGCAGGGATGGGGATGATA...CCGATTGCATTCTGTGCTAAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR-3UTR CCA 90 bp AGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAACCTGGCACGGACTAAACGAATGGGGTTCTaGATCCAGGGGCAAATTTCC +
Preference number: 2 (lower is better)
Translates to: SSFPALSLPTLWQNLARTKRMGF*IQGQIS
Trigger: GGAAATTTGCCCCTGGATCCAGAACCCCATTCGTTT...AGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR-3UTR CCA 90 bp ATGTTAAAAGACGGAGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAGAGGCCAGCCAAGCCTaGCCTTCTGGAGCAGTTTTG +
Preference number: 2 (lower is better)
Translates to: MLKDGARFLHFPFPHFGREASQA*PSGAVL
Trigger: CAAAACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTC...TCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCTCCGTCTTTTAACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR CAA 90 bp CTGAAGAGCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTTaGGAAACAAGTCACCACTCCAGAATTATAGCTCTGTCTATCATC +
Preference number: 2 (lower is better)
Translates to: LKSREASQAWPSGAV*ETSHHSRIIALSII
Trigger: GATGATAGACAGAGCTATAATTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGCTCTTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR-3UTR CCA 90 bp ATGTTAAAAGACGGAGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGACCAAGCCTGGCCTTCTaGAGCAGTTTTGGAAACAAG +
Preference number: 2 (lower is better)
Translates to: MLKDGARFLHFPFPHFGRPSLAF*SSFGNK
Trigger: CTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGG...TCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCTCCGTCTTTTAACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR-3UTR TCA 90 bp CTCCTAGCTCCAAAGTCAGTTATGCTGGGACCTATCCCAACTGTAAAACGAATGAGCTCAGCCAGTGTTTaGCATGGGGCATTCAACAAG +
Preference number: 2 (lower is better)
Translates to: LLAPKSVMLGPIPTVKRMSSASV*HGAFNK
Trigger: CTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCT...CATTCGTTTTACAGTTGGGATAGGTCCCAGCATAACTGACTTTGGAGCTAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR CCA 72 bp CATCCCCCGAGAGAGGCCCCCTGCCCACAAGCTTTCTaGAGGCTTGGCGTTCAGAGGGCTGCATCAAGGGGG +
Preference number: 3 (lower is better)
Translates to: HPPREAPCPQAF*RLGVQRAASRG
Trigger: CCCCCTTGATGCAGCCCTCTGAACGCCAAGCCTCCAGAAAGCTTGTGGGCAGGGGGCCTCTCTCGGGGGATG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR TCA 72 bp ACAGGGCGGTTCAGGACACACATCTGGACACCCAACTaGAGAGCAGGGAGGCCAGCCAAGCCTGGCCTTCTG +
Preference number: 3 (lower is better)
Translates to: TGRFRTHIWTPN*RAGRPAKPGLL
Trigger: CAGAAGGCCAGGCTTGGCTGGCCTCCCTGCTCTTCAGTTGGGTGTCCAGATGTGTGTCCTGAACCGCCCTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR GCA 72 bp CCCACAAGCTTTCTGGAGGCTTGGCGTTCAGAGGGCTaGATCAAGGGGGTCTTACAGTGTGGCGCAGAGGCC +
Preference number: 3 (lower is better)
Translates to: PTSFLEAWRSEG*IKGVLQCGAEA
Trigger: GGCCTCTGCGCCACACTGTAAGACCCCCTTGATGCAGCCCTCTGAACGCCAAGCCTCCAGAAAGCTTGTGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR-3UTR CAA 90 bp GACACCCAACTGAAGAGCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTCAGCTCAGCCAGTGTTaGACATGGGGCATTCAACAA +
Preference number: 3 (lower is better)
Translates to: DTQLKSREASQAWPSGAVQLSQC*TWGIQQ
Trigger: TTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTG...AACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGCTCTTCAGTTGGGTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR-3UTR CAA 90 bp AGCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCAGCTCAGCCAGTGTTaGACATGGGGCATTCAACAA +
Preference number: 3 (lower is better)
Translates to: SREASQAWPSGAVLETSHQLSQC*TWGIQQ
Trigger: TTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTG...GTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR TCA 72 bp GGCATTCAACAAGGCCAGTATATACGTGGTCCCCTCTaGGTCCCTGATGTCCGCACCCTTCCTACTGCCTTT +
Preference number: 3 (lower is better)
Translates to: GIQQGQYIRGPL*VPDVRTLPTAF
Trigger: AAAGGCAGTAGGAAGGGTGCGGACATCAGGGACTCAGAGGGGACCACGTATATACTGGCCTTGTTGAATGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR CCA 72 bp CGGAGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTaGCAGAACCTGGCACGGACTGCTTTAGCACAGAAT +
Preference number: 3 (lower is better)
Translates to: RSSFPALSLPTL*QNLARTALAQN
Trigger: ATTCTGTGCTAAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCTCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR TCA 72 bp ACAAGGCCAGTATATACGTGGTCCCCTCTGAGTCCCTaGTGTCCGCACCCTTCCTACTGCCTTTCACGTATT +
Preference number: 3 (lower is better)
Translates to: TRPVYTWSPLSP*CPHPSYCLSRI
Trigger: AATACGTGAAAGGCAGTAGGAAGGGTGCGGACATCAGGGACTCAGAGGGGACCACGTATATACTGGCCTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR GCA 72 bp TTCCCTTCCCACACTTTGGCAGAACCTGGCACGGACTaGTTTAGCACAGAATGCAATCGGAGGTGTGGTTCT +
Preference number: 3 (lower is better)
Translates to: FPSHTLAEPGTD*FSTECNRRCGS
Trigger: AGAACCACACCTCCGATTGCATTCTGTGCTAAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR TCA 72 bp AATCGGAGGTGTGGTTCTTTGGCATGTAATCTGTGTTaGTCCATCCAAATGGGCTTGGCACAGGGCACAGGC +
Preference number: 3 (lower is better)
Translates to: NRRCGSLACNLC*SIQMGLAQGTG
Trigger: GCCTGTGCCCTGTGCCAAGCCCATTTGGATGGATCAACACAGATTACATGCCAAAGAACCACACCTCCGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR-3UTR CAA 90 bp CCTTATGTGGTGGGAGATCCTAGGTTCCAGAGAGTAGCAATTATCCAGAGCCAGCAGCTCAGCCAGTGTTaGACATGGGGCATTCAACAA +
Preference number: 3 (lower is better)
Translates to: PYVVGDPRFQRVAIIQSQQLSQC*TWGIQQ
Trigger: TTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTG...CTGGCTCTGGATAATTGCTACTCTCTGGAACCTAGGATCTCCCACCACATAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR GCA 72 bp TTGGCAGAACCTGGCACGGACTGCTTTAGCACAGAATaGAATCGGAGGTGTGGTTCTTTGGCATGTAATCTG +
Preference number: 3 (lower is better)
Translates to: LAEPGTDCFSTE*NRRCGSLACNL
Trigger: CAGATTACATGCCAAAGAACCACACCTCCGATTGCATTCTGTGCTAAAGCAGTCCGTGCCAGGTTCTGCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp GGACACACATCTGGACACCCAACTGAAGAGCAGGGAGGCCAGCCAAGCCTGGCCGCCCACCACACCCCCTaGCAGGCCCATGAGCCCAGC +
Preference number: 4 (lower is better)
Translates to: GHTSGHPTEEQGGQPSLAAHHTP*QAHEPS
Trigger: GCTGGGCTCATGGGCCTGGCAGGGGGTGTGGTGGGC...GGCCAGGCTTGGCTGGCCTCCCTGCTCTTCAGTTGGGTGTCCAGATGTGTGTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCGGGCGGCTCCCGGGTTaGGGAGGGACGGTGTCCCAG +
Preference number: 4 (lower is better)
Translates to: AGRPAKPGLLEQFWKQVTGRLPG*GGTVSQ
Trigger: CTGGGACACCGTCCCTCCCCAACCCGGGAGCCGCCC...GGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp TCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGCGCTGCTGCCATGCCTaGGCCCACCACACCCCCTGC +
Preference number: 4 (lower is better)
Translates to: SGFWTHRKPPAQPVFDMGRCCHA*AHHTPC
Trigger: GCAGGGGGTGTGGTGGGCGCAGGCATGGCAGCAGCG...CCCCATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp GGACACACATCTGGACACCCAACTGAAGAGCAGGGAGGCCAGCCAAGCCTGGCCGAAGGCCTTGGCTTCTaGCTGCAGCTCGGCTTCCAG +
Preference number: 4 (lower is better)
Translates to: GHTSGHPTEEQGGQPSLAEGLGF*LQLGFQ
Trigger: CTGGAAGCCGAGCTGCAGGCAGAAGCCAAGGCCTTC...GGCCAGGCTTGGCTGGCCTCCCTGCTCTTCAGTTGGGTGTCCAGATGTGTGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp CAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACACCGCGGCCCCAGCTaGTACCATCCCAGCCTCAGC +
Preference number: 4 (lower is better)
Translates to: QGGQPSLAFWSSFGNKSPHRGPS*YHPSLS
Trigger: GCTGAGGCTGGGATGGTAGCAGCTGGGGCCGCGGTG...TGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GACACCCAACTGAAGAGCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTGCCTTTCCAGACAGATaGAGCAGGTGGGCGGCTCCC +
Preference number: 4 (lower is better)
Translates to: DTQLKSREASQAWPSGAVAFPDR*SRWAAP
Trigger: GGGAGCCGCCCACCTGCTCCATCTGTCTGGAAAGGC...AACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGCTCTTCAGTTGGGTGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp GACACCCAACTGAAGAGCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTGAAGGCCTTGGCTTCTaGCTGCAGCTCGGCTTCCAG +
Preference number: 4 (lower is better)
Translates to: DTQLKSREASQAWPSGAVEGLGF*LQLGFQ
Trigger: CTGGAAGCCGAGCTGCAGGCAGAAGCCAAGGCCTTC...AACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGCTCTTCAGTTGGGTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp TCCCACACTTTGGCAGAACCTGGCACGGACTGCTTTAGCACAGAATGCAATCGGGCCCACCACACCCCCTaGCAGGCCCATGAGCCCAGC +
Preference number: 4 (lower is better)
Translates to: SHTLAEPGTDCFSTECNRAHHTP*QAHEPS
Trigger: GCTGGGCTCATGGGCCTGGCAGGGGGTGTGGTGGGC...CCGATTGCATTCTGTGCTAAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp TCCCACACTTTGGCAGAACCTGGCACGGACTGCTTTAGCACAGAATGCAATCGGCGCTGCTGCCATGCCTaGGCCCACCACACCCCCTGC +
Preference number: 4 (lower is better)
Translates to: SHTLAEPGTDCFSTECNRRCCHA*AHHTPC
Trigger: GCAGGGGGTGTGGTGGGCGCAGGCATGGCAGCAGCG...CCGATTGCATTCTGTGCTAAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GTTCCAGAGAGTAGCAATTATCCAGAGCCAGAAACAGGCCTTGCACCCTATCCGGGGCGGCTCCCGGGTTaGGGAGGGACGGTGTCCCAG +
Preference number: 4 (lower is better)
Translates to: VPESSNYPEPETGLAPYPGRLPG*GGTVSQ
Trigger: CTGGGACACCGTCCCTCCCCAACCCGGGAGCCGCCC...CGGATAGGGTGCAAGGCCTGTTTCTGGCTCTGGATAATTGCTACTCTCTGGAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp CCTCCTTTTTCTTCCCTGTTAGCGGGGCTCCTAGCTCCAAAGTCAGTTATGCTGGGGCGGCTCCCGGGTTaGGGAGGGACGGTGTCCCAG +
Preference number: 4 (lower is better)
Translates to: PPFSSLLAGLLAPKSVMLGRLPG*GGTVSQ
Trigger: CTGGGACACCGTCCCTCCCCAACCCGGGAGCCGCCC...CAGCATAACTGACTTTGGAGCTAGGAGCCCCGCTAACAGGGAAGAAAAAGGAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GGACACACATCTGGACACCCAACTGAAGAGCAGGGAGGCCAGCCAAGCCTGGCCGCAGCTCCTGGACCTTaGGGTATTTGCCGGACAGCT +
Preference number: 4 (lower is better)
Translates to: GHTSGHPTEEQGGQPSLAAAPGP*GICRTA
Trigger: AGCTGTCCGGCAAATACCCCAAGGTCCAGGAGCTGC...GGCCAGGCTTGGCTGGCCTCCCTGCTCTTCAGTTGGGTGTCCAGATGTGTGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR CAA 72 bp CGAGAGAGGCCCCCTGCCCACAAGCTTTCTGGAGGCTaGGCGTTCAGAGGGCTGCATCAAGGGGGTCTTACA +
Preference number: 4 (lower is better)
Translates to: RERPPAHKLSGG*AFRGLHQGGLT
Trigger: TGTAAGACCCCCTTGATGCAGCCCTCTGAACGCCAAGCCTCCAGAAAGCTTGTGGGCAGGGGGCCTCTCTCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp GGACACACATCTGGACACCCAACTGAAGAGCAGGGAGGCCAGCCAAGCCTGGCCGGATGCGGTGTGTGCTaGAGCATCGGATGCAGAAGT +
Preference number: 4 (lower is better)
Translates to: GHTSGHPTEEQGGQPSLAGCGVC*SIGCRS
Trigger: ACTTCTGCATCCGATGCTTCAGCACACACCGCATCC...GGCCAGGCTTGGCTGGCCTCCCTGCTCTTCAGTTGGGTGTCCAGATGTGTGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp ACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGCATTCAACAAGGCTAGCTGCTGCCCTGTaGGCAGGCGTCTGTCTCCCC +
Preference number: 4 (lower is better)
Translates to: THRKPPAQPVFDMGHSTRLAAAL*AGVCLP
Trigger: GGGGAGACAGACGCCTGCTCACAGGGCAGCAGCTAG...CCTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp TCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGACAGCACAGGTCTCCTaGAGTGCAGGGGGCAGTGGC +
Preference number: 4 (lower is better)
Translates to: SGFWTHRKPPAQPVFDMGTAQVS*SAGGSG
Trigger: GCCACTGCCCCCTGCACTGCAGGAGACCTGTGCTGT...CCCCATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp GGACACACATCTGGACACCCAACTGAAGAGCAGGGAGGCCAGCCAAGCCTGGCCAAGGACTTTCCTGAGTaGTGCTCTCCCAGGACAGCC +
Preference number: 4 (lower is better)
Translates to: GHTSGHPTEEQGGQPSLAKDFPE*CSPRTA
Trigger: GGCTGTCCTGGGAGAGCAGCACTCAGGAAAGTCCTT...GGCCAGGCTTGGCTGGCCTCCCTGCTCTTCAGTTGGGTGTCCAGATGTGTGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp AGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAACCTGGCACGGACTAGGCAGAGACCCCTCTaGTCTGGGCCTGCCGCTGTC +
Preference number: 4 (lower is better)
Translates to: SSFPALSLPTLWQNLARTRQRPL*SGPAAV
Trigger: GACAGCGGCAGGCCCAGAGCAGAGGGGTCTCTGCCT...AGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp AAACAGGCCTTGCACCCTATCCGCTGTACTCCAAGTACAGCCTCGTGGCCAGAAGCCTTGGCTTCTGCCTaGAGCTCGGCTTCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: KQALHPIRCTPSTASWPEALASA*SSASRA
Trigger: GGCCCTGGAAGCCGAGCTGCAGGCAGAAGCCAAGGC...TTCTGGCCACGAGGCTGTACTTGGAGTACAGCGGATAGGGTGCAAGGCCTGTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp GTGGGAGATCCTAGGTTCCAGAGAGTAGCAATTATCCAGAGCCAGAAACAGGCCACGCCGCTGCTGCCATaGCTGCGCCCACCACACCCC +
Preference number: 4 (lower is better)
Translates to: VGDPRFQRVAIIQSQKQATPLLP*LRPPHP
Trigger: GGGGTGTGGTGGGCGCAGGCATGGCAGCAGCGGCGT...GGCCTGTTTCTGGCTCTGGATAATTGCTACTCTCTGGAACCTAGGATCTCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAACCTGGCACGGACTGCTTTGACAGATGGAGCAGGTaGGCGGCTCCCGGGTTGGGG +
Preference number: 4 (lower is better)
Translates to: VSCTFPSHTLAEPGTDCFDRWSR*AAPGLG
Trigger: CCCCAACCCGGGAGCCGCCCACCTGCTCCATCTGTC...AAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GACACCCAACTGAAGAGCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTGCAGCTCCTGGACCTTaGGGTATTTGCCGGACAGCT +
Preference number: 4 (lower is better)
Translates to: DTQLKSREASQAWPSGAVAAPGP*GICRTA
Trigger: AGCTGTCCGGCAAATACCCCAAGGTCCAGGAGCTGC...AACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGCTCTTCAGTTGGGTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp AGCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCCTACCGCGGCCAGGTaGCCACAGAAGCGCATTGTG +
Preference number: 4 (lower is better)
Translates to: SREASQAWPSGAVLETSHPTAAR*PQKRIV
Trigger: CACAATGCGCTTCTGTGGCCACCTGGCCGCGGTAGG...GTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp GCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCTCACTCCAGTACCCTTaGCAGCGGCTCTTAGCGTGC +
Preference number: 4 (lower is better)
Translates to: AGRPAKPGLLEQFWKQVTSLQYP*QRLLAC
Trigger: GCACGCTAAGAGCCGCTGTCAAGGGTACTGGAGTGA...GGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp GTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAACCTGGCACGGACTGCTTTAGGCAGAGACCCCTCTaGTCTGGGCCTGCCGCTGTC +
Preference number: 4 (lower is better)
Translates to: VSCTFPSHTLAEPGTDCFRQRPL*SGPAAV
Trigger: GACAGCGGCAGGCCCAGAGCAGAGGGGTCTCTGCCT...AAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp CCTTATGTGGTGGGAGATCCTAGGTTCCAGAGAGTAGCAATTATCCAGAGCCAGCGCTGCTGCCATGCCTaGGCCCACCACACCCCCTGC +
Preference number: 4 (lower is better)
Translates to: PYVVGDPRFQRVAIIQSQRCCHA*AHHTPC
Trigger: GCAGGGGGTGTGGTGGGCGCAGGCATGGCAGCAGCG...CTGGCTCTGGATAATTGCTACTCTCTGGAACCTAGGATCTCCCACCACATAAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp GTGGGAGATCCTAGGTTCCAGAGAGTAGCAATTATCCAGAGCCAGAAACAGGCCCACCGCGGCCCCAGCTaGTACCATCCCAGCCTCAGC +
Preference number: 4 (lower is better)
Translates to: VGDPRFQRVAIIQSQKQAHRGPS*YHPSLS
Trigger: GCTGAGGCTGGGATGGTAGCAGCTGGGGCCGCGGTG...GGCCTGTTTCTGGCTCTGGATAATTGCTACTCTCTGGAACCTAGGATCTCCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp AAACAGGCCTTGCACCCTATCCGCTGTACTCCAAGTACAGCCTCGTGGCCAGAACCTCCCTGCACAGCCTaGCCCATCCAGCCTTGTGCT +
Preference number: 4 (lower is better)
Translates to: KQALHPIRCTPSTASWPEPPCTA*PIQPCA
Trigger: AGCACAAGGCTGGATGGGCCAGGCTGTGCAGGGAGG...TTCTGGCCACGAGGCTGTACTTGGAGTACAGCGGATAGGGTGCAAGGCCTGTTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS-3UTR CCA 90 bp TCCTCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGGCCTTTCCAGACAGATaGAGCAGGTGGGCGGCTCCC +
Preference number: 4 (lower is better)
Translates to: SSGFWTHRKPPAQPVFDMAFPDR*SRWAAP
Trigger: GGGAGCCGCCCACCTGCTCCATCTGTCTGGAAAGGC...CATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGAGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GACACCCAACTGAAGAGCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTCTCCTTGCTCAGTTCTaGGCTCATGACATCCCCCGT +
Preference number: 4 (lower is better)
Translates to: DTQLKSREASQAWPSGAVLLAQF*AHDIPR
Trigger: ACGGGGGATGTCATGAGCCCAGAACTGAGCAAGGAG...AACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGCTCTTCAGTTGGGTGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp CAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCAAACAGGGCCACACCATaGCGGGCCAAGATGGCATCC +
Preference number: 4 (lower is better)
Translates to: QGGQPSLAFWSSFGNKSPNRATP*RAKMAS
Trigger: GGATGCCATCTTGGCCCGCCATGGTGTGGCCCTGTT...TGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp ACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGCATTCAACAAGGCCTACCGCGGCCAGGTaGCCACAGAAGCGCATTGTG +
Preference number: 4 (lower is better)
Translates to: THRKPPAQPVFDMGHSTRPTAAR*PQKRIV
Trigger: CACAATGCGCTTCTGTGGCCACCTGGCCGCGGTAGG...CCTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp GCCTCCTCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACACAAAAAGCAGTGACTaGCAGGACGGGCCTCGGCAT +
Preference number: 4 (lower is better)
Translates to: ASSGFWTHRKPPAQPVFDTKSSD*QDGPRH
Trigger: ATGCCGAGGCCCGTCCTGTCAGTCACTGCTTTTTGT...GTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGAGGAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp TTTTCTTCCCTGTTAGCGGGGCTCCTAGCTCCAAAGTCAGTTATGCTGGGACCTCGGCTCTTAGCGTGCTaGGGGGCTGTGCTCAGCACG +
Preference number: 4 (lower is better)
Translates to: FSSLLAGLLAPKSVMLGPRLLAC*GAVLST
Trigger: CGTGCTGAGCACAGCCCCTCAGCACGCTAAGAGCCG...AGGTCCCAGCATAACTGACTTTGGAGCTAGGAGCCCCGCTAACAGGGAAGAAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp AGCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACTCACTCCAGTACCCTTaGCAGCGGCTCTTAGCGTGC +
Preference number: 4 (lower is better)
Translates to: SREASQAWPSGAVLETSHSLQYP*QRLLAC
Trigger: GCACGCTAAGAGCCGCTGTCAAGGGTACTGGAGTGA...GTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp GGACACACATCTGGACACCCAACTGAAGAGCAGGGAGGCCAGCCAAGCCTGGCCAGCCAGAGAGATTCTTaGTCTCCTGTGCTAGCTGCT +
Preference number: 4 (lower is better)
Translates to: GHTSGHPTEEQGGQPSLASQRDS*SPVLAA
Trigger: AGCAGCTAGCACAGGAGATCAAGAATCTCTCTGGCT...GGCCAGGCTTGGCTGGCCTCCCTGCTCTTCAGTTGGGTGTCCAGATGTGTGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp AAACAGGCCTTGCACCCTATCCGCTGTACTCCAAGTACAGCCTCGTGGCCAGAAGCCCATCCAGCCTTGTaGTTCCTCCCTGGGGAGAAC +
Preference number: 4 (lower is better)
Translates to: KQALHPIRCTPSTASWPEAHPAL*FLPGEN
Trigger: GTTCTCCCCAGGGAGGAAGCACAAGGCTGGATGGGC...TTCTGGCCACGAGGCTGTACTTGGAGTACAGCGGATAGGGTGCAAGGCCTGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS-3UTR GCA 90 bp TTTTCTTCCCTGTTAGCGGGGCTCCTAGCTCCAAAGTCAGTTATGCTGGGACCTACAGGTCTCCTGCAGTaGAGGGGGCAGTGGCCGCTG +
Preference number: 4 (lower is better)
Translates to: FSSLLAGLLAPKSVMLGPTGLLQ*RGQWPL
Trigger: CAGCGGCCACTGCCCCCTGCACTGCAGGAGACCTGT...AGGTCCCAGCATAACTGACTTTGGAGCTAGGAGCCCCGCTAACAGGGAAGAAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp CCTCCTTTTTCTTCCCTGTTAGCGGGGCTCCTAGCTCCAAAGTCAGTTATGCTGACAGGTCTCCTGCAGTaGAGGGGGCAGTGGCCGCTG +
Preference number: 4 (lower is better)
Translates to: PPFSSLLAGLLAPKSVMLTGLLQ*RGQWPL
Trigger: CAGCGGCCACTGCCCCCTGCACTGCAGGAGACCTGT...CAGCATAACTGACTTTGGAGCTAGGAGCCCCGCTAACAGGGAAGAAAAAGGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp GTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAACCTGGCACGGACTGCTTTACAGCACAGGTCTCCTaGAGTGCAGGGGGCAGTGGC +
Preference number: 4 (lower is better)
Translates to: VSCTFPSHTLAEPGTDCFTAQVS*SAGGSG
Trigger: GCCACTGCCCCCTGCACTGCAGGAGACCTGTGCTGT...AAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp GTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGCATTCAACAAGGCCAGTATGCCTTGGCTTCTGCCTaGAGCTCGGCTTCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: VNPQLSQCLTWGIQQGQYALASA*SSASRA
Trigger: GGCCCTGGAAGCCGAGCTGCAGGCAGAAGCCAAGGC...ATACTGGCCTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTGGGGGTTTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp GCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAATTATAGCTGCCCACCACACCCCCTaGCAGGCCCATGAGCCCAGC +
Preference number: 4 (lower is better)
Translates to: AWPSGAVLETSHHSRIIAAHHTP*QAHEPS
Trigger: GCTGGGCTCATGGGCCTGGCAGGGGGTGTGGTGGGC...AGCTATAATTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp ATGTTAAAAGACGGAGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAACGCCGCTGCTGCCATaGCTGCGCCCACCACACCCC +
Preference number: 4 (lower is better)
Translates to: MLKDGARFLHFPFPHFGRTPLLP*LRPPHP
Trigger: GGGGTGTGGTGGGCGCAGGCATGGCAGCAGCGGCGT...TCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCTCCGTCTTTTAACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp CAGCTCAGCCAGTGTTTGACATGGGGCATTCAACAAGGCCAGTATATACGTGGTGACAGATGGAGCAGGTaGGCGGCTCCCGGGTTGGGG +
Preference number: 4 (lower is better)
Translates to: QLSQCLTWGIQQGQYIRGDRWSR*AAPGLG
Trigger: CCCCAACCCGGGAGCCGCCCACCTGCTCCATCTGTC...ACCACGTATATACTGGCCTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp ACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGCATTCAACAAGGCCGAGGAGCAGCTCCTaGACCTTGGGGTATTTGCCG +
Preference number: 4 (lower is better)
Translates to: THRKPPAQPVFDMGHSTRPRSSS*TLGYLP
Trigger: CGGCAAATACCCCAAGGTCCAGGAGCTGCTCCTCGG...CCTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp TCCTCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGCCGAGGAGCAGCTCCTaGACCTTGGGGTATTTGCCG +
Preference number: 4 (lower is better)
Translates to: SSGFWTHRKPPAQPVFDMPRSSS*TLGYLP
Trigger: CGGCAAATACCCCAAGGTCCAGGAGCTGCTCCTCGG...CATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGAGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GACACCCAACTGAAGAGCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTTGTTGCCTCTGGGGCTaGCTTGGTCTTTGTTTACCC +
Preference number: 4 (lower is better)
Translates to: DTQLKSREASQAWPSGAVCCLWG*LGLCLP
Trigger: GGGTAAACAAAGACCAAGCCAGCCCCAGAGGCAACA...AACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGCTCTTCAGTTGGGTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp CCTAGCTCCAAAGTCAGTTATGCTGGGACCTATCCCAACTGTAAAACGAATGGGGGCGTCTGTCTCCCCTaGCCACGGCACGCCCCTCAC +
Preference number: 4 (lower is better)
Translates to: PSSKVSYAGTYPNCKTNGGVCLP*PRHAPH
Trigger: GTGAGGGGCGTGCCGTGGCCAGGGGAGACAGACGCC...CCCATTCGTTTTACAGTTGGGATAGGTCCCAGCATAACTGACTTTGGAGCTAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAATTATAGCTGGCGTCTGTCTCCCCTaGCCACGGCACGCCCCTCAC +
Preference number: 4 (lower is better)
Translates to: AWPSGAVLETSHHSRIIAGVCLP*PRHAPH
Trigger: GTGAGGGGCGTGCCGTGGCCAGGGGAGACAGACGCC...AGCTATAATTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp AGCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACACAAAAAGCAGTGACTaGCAGGACGGGCCTCGGCAT +
Preference number: 4 (lower is better)
Translates to: SREASQAWPSGAVLETSHTKSSD*QDGPRH
Trigger: ATGCCGAGGCCCGTCCTGTCAGTCACTGCTTTTTGT...GTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp GACACCCAACTGAAGAGCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTCGTTTGCCAAGCCGATaGCAAAAAGCAGTGACTGAC +
Preference number: 4 (lower is better)
Translates to: DTQLKSREASQAWPSGAVRLPSR*QKAVTD
Trigger: GTCAGTCACTGCTTTTTGTCATCGGCTTGGCAAACG...AACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGCTCTTCAGTTGGGTGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp CAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCAGGATGCGGTGTGTGCTaGAGCATCGGATGCAGAAGT +
Preference number: 4 (lower is better)
Translates to: QGGQPSLAFWSSFGNKSPGCGVC*SIGCRS
Trigger: ACTTCTGCATCCGATGCTTCAGCACACACCGCATCC...TGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp TCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGAAGGAAGGACTTTCCTaGGTGCTGCTCTCCCAGGAC +
Preference number: 4 (lower is better)
Translates to: SGFWTHRKPPAQPVFDMGKEGLS*VLLSQD
Trigger: GTCCTGGGAGAGCAGCACTCAGGAAAGTCCTTCCTT...CCCCATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp AAACAGGCCTTGCACCCTATCCGCTGTACTCCAAGTACAGCCTCGTGGCCAGAATCACTCCAGTACCCTTaGCAGCGGCTCTTAGCGTGC +
Preference number: 4 (lower is better)
Translates to: KQALHPIRCTPSTASWPESLQYP*QRLLAC
Trigger: GCACGCTAAGAGCCGCTGTCAAGGGTACTGGAGTGA...TTCTGGCCACGAGGCTGTACTTGGAGTACAGCGGATAGGGTGCAAGGCCTGTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp TCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGTCCTTTCCCCTAGACTaGGGAGGCCCTTCCTTTGCT +
Preference number: 4 (lower is better)
Translates to: SGFWTHRKPPAQPVFDMGSFPLD*GGPSFA
Trigger: AGCAAAGGAAGGGCCTCCGCAGTCTAGGGGAAAGGA...CCCCATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp CCTTATGTGGTGGGAGATCCTAGGTTCCAGAGAGTAGCAATTATCCAGAGCCAGACAGGTCTCCTGCAGTaGAGGGGGCAGTGGCCGCTG +
Preference number: 4 (lower is better)
Translates to: PYVVGDPRFQRVAIIQSQTGLLQ*RGQWPL
Trigger: CAGCGGCCACTGCCCCCTGCACTGCAGGAGACCTGT...CTGGCTCTGGATAATTGCTACTCTCTGGAACCTAGGATCTCCCACCACATAAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp GTGGGAGATCCTAGGTTCCAGAGAGTAGCAATTATCCAGAGCCAGAAACAGGCCACAGCACAGGTCTCCTaGAGTGCAGGGGGCAGTGGC +
Preference number: 4 (lower is better)
Translates to: VGDPRFQRVAIIQSQKQATAQVS*SAGGSG
Trigger: GCCACTGCCCCCTGCACTGCAGGAGACCTGTGCTGT...GGCCTGTTTCTGGCTCTGGATAATTGCTACTCTCTGGAACCTAGGATCTCCCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp GCCAGTATATACGTGGTCCCCTCTGAGTCCCTGATGTCCGCACCCTTCCTACTGCAACAGCAGACGTTCTaGCCTCACAGCACAGGTCTC +
Preference number: 4 (lower is better)
Translates to: ASIYVVPSESLMSAPFLLQQQTF*PHSTGL
Trigger: GAGACCTGTGCTGTGAGGGCAGAACGTCTGCTGTTG...CAGTAGGAAGGGTGCGGACATCAGGGACTCAGAGGGGACCACGTATATACTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp AGCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCAACAGCAGACGTTCTaGCCTCACAGCACAGGTCTC +
Preference number: 4 (lower is better)
Translates to: SREASQAWPSGAVLETSHQQQTF*PHSTGL
Trigger: GAGACCTGTGCTGTGAGGGCAGAACGTCTGCTGTTG...GTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp CCTTATGTGGTGGGAGATCCTAGGTTCCAGAGAGTAGCAATTATCCAGAGCCAGGCCTTGGCTTCTGCCTaGAGCTCGGCTTCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: PYVVGDPRFQRVAIIQSQALASA*SSASRA
Trigger: GGCCCTGGAAGCCGAGCTGCAGGCAGAAGCCAAGGC...CTGGCTCTGGATAATTGCTACTCTCTGGAACCTAGGATCTCCCACCACATAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp CTCCTAGCTCCAAAGTCAGTTATGCTGGGACCTATCCCAACTGTAAAACGAATGACGCCGCTGCTGCCATaGCTGCGCCCACCACACCCC +
Preference number: 4 (lower is better)
Translates to: LLAPKSVMLGPIPTVKRMTPLLP*LRPPHP
Trigger: GGGGTGTGGTGGGCGCAGGCATGGCAGCAGCGGCGT...CATTCGTTTTACAGTTGGGATAGGTCCCAGCATAACTGACTTTGGAGCTAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAACCTGGCACGGACTGCTTTGGCCCAGCTCCAGCTTaGGGAATGATGCATGGGACC +
Preference number: 4 (lower is better)
Translates to: VSCTFPSHTLAEPGTDCFGPAPA*GMMHGT
Trigger: GGTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCC...AAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp CCTAGCTCCAAAGTCAGTTATGCTGGGACCTATCCCAACTGTAAAACGAATGGGGACAGATGGAGCAGGTaGGCGGCTCCCGGGTTGGGG +
Preference number: 4 (lower is better)
Translates to: PSSKVSYAGTYPNCKTNGDRWSR*AAPGLG
Trigger: CCCCAACCCGGGAGCCGCCCACCTGCTCCATCTGTC...CCCATTCGTTTTACAGTTGGGATAGGTCCCAGCATAACTGACTTTGGAGCTAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GCCAGTATATACGTGGTCCCCTCTGAGTCCCTGATGTCCGCACCCTTCCTACTGCACAGTCCAGCGAGATaGGCTCTCGAAGCCTTTCCA +
Preference number: 4 (lower is better)
Translates to: ASIYVVPSESLMSAPFLLHSPAR*ALEAFP
Trigger: TGGAAAGGCTTCGAGAGCCCATCTCGCTGGACTGTG...CAGTAGGAAGGGTGCGGACATCAGGGACTCAGAGGGGACCACGTATATACTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp TCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGCGGATGCAGAAGTCATaGCCACAGTCCAGCGAGATG +
Preference number: 4 (lower is better)
Translates to: SGFWTHRKPPAQPVFDMGRMQKS*PQSSEM
Trigger: CATCTCGCTGGACTGTGGCCATGACTTCTGCATCCG...CCCCATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp ATCGGAGGTGTGGTTCTTTGGCATGTAATCTGTGTTGATCCATCCAAATGGGCTGGCGTCTGTCTCCCCTaGCCACGGCACGCCCCTCAC +
Preference number: 4 (lower is better)
Translates to: IGGVVLWHVICVDPSKWAGVCLP*PRHAPH
Trigger: GTGAGGGGCGTGCCGTGGCCAGGGGAGACAGACGCC...AGCCCATTTGGATGGATCAACACAGATTACATGCCAAAGAACCACACCTCCGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAACCTGGCACGGACTGCTTTAACAGGGCCACACCATaGCGGGCCAAGATGGCATCC +
Preference number: 4 (lower is better)
Translates to: VSCTFPSHTLAEPGTDCFNRATP*RAKMAS
Trigger: GGATGCCATCTTGGCCCGCCATGGTGTGGCCCTGTT...AAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp CCTCCTTTTTCTTCCCTGTTAGCGGGGCTCCTAGCTCCAAAGTCAGTTATGCTGCCTACCGCGGCCAGGTaGCCACAGAAGCGCATTGTG +
Preference number: 4 (lower is better)
Translates to: PPFSSLLAGLLAPKSVMLPTAAR*PQKRIV
Trigger: CACAATGCGCTTCTGTGGCCACCTGGCCGCGGTAGG...CAGCATAACTGACTTTGGAGCTAGGAGCCCCGCTAACAGGGAAGAAAAAGGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp AAACAGGCCTTGCACCCTATCCGCTGTACTCCAAGTACAGCCTCGTGGCCAGAAACAAAAAGCAGTGACTaGCAGGACGGGCCTCGGCAT +
Preference number: 4 (lower is better)
Translates to: KQALHPIRCTPSTASWPETKSSD*QDGPRH
Trigger: ATGCCGAGGCCCGTCCTGTCAGTCACTGCTTTTTGT...TTCTGGCCACGAGGCTGTACTTGGAGTACAGCGGATAGGGTGCAAGGCCTGTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp TCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGTGCTGCTGTTTCCCATaGAGCTTCGTTTGCTCTCCC +
Preference number: 4 (lower is better)
Translates to: SGFWTHRKPPAQPVFDMGCCCFP*SFVCSP
Trigger: GGGAGAGCAAACGAAGCTTCATGGGAAACAGCAGCA...CCCCATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp AAACAGGCCTTGCACCCTATCCGCTGTACTCCAAGTACAGCCTCGTGGCCAGAAGGATGCGGTGTGTGCTaGAGCATCGGATGCAGAAGT +
Preference number: 4 (lower is better)
Translates to: KQALHPIRCTPSTASWPEGCGVC*SIGCRS
Trigger: ACTTCTGCATCCGATGCTTCAGCACACACCGCATCC...TTCTGGCCACGAGGCTGTACTTGGAGTACAGCGGATAGGGTGCAAGGCCTGTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp AGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAACCTGGCACGGACTAAGGAAGGACTTTCCTaGGTGCTGCTCTCCCAGGAC +
Preference number: 4 (lower is better)
Translates to: SSFPALSLPTLWQNLARTKEGLS*VLLSQD
Trigger: GTCCTGGGAGAGCAGCACTCAGGAAAGTCCTTCCTT...AGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp CCTAGCTCCAAAGTCAGTTATGCTGGGACCTATCCCAACTGTAAAACGAATGGGCGGCTCTTAGCGTGCTaGGGGGCTGTGCTCAGCACG +
Preference number: 4 (lower is better)
Translates to: PSSKVSYAGTYPNCKTNGRLLAC*GAVLST
Trigger: CGTGCTGAGCACAGCCCCTCAGCACGCTAAGAGCCG...CCCATTCGTTTTACAGTTGGGATAGGTCCCAGCATAACTGACTTTGGAGCTAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp ATGTTAAAAGACGGAGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGACGGCTCTTAGCGTGCTaGGGGGCTGTGCTCAGCACG +
Preference number: 4 (lower is better)
Translates to: MLKDGARFLHFPFPHFGRRLLAC*GAVLST
Trigger: CGTGCTGAGCACAGCCCCTCAGCACGCTAAGAGCCG...TCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCTCCGTCTTTTAACAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp AGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAATTATAGCCTAGCTGCTGCCCTGTaGGCAGGCGTCTGTCTCCCC +
Preference number: 4 (lower is better)
Translates to: SLAFWSSFGNKSPLQNYSLAAAL*AGVCLP
Trigger: GGGGAGACAGACGCCTGCTCACAGGGCAGCAGCTAG...GCTATAATTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp CCTAGCTCCAAAGTCAGTTATGCTGGGACCTATCCCAACTGTAAAACGAATGGGCTAGCTGCTGCCCTGTaGGCAGGCGTCTGTCTCCCC +
Preference number: 4 (lower is better)
Translates to: PSSKVSYAGTYPNCKTNGLAAAL*AGVCLP
Trigger: GGGGAGACAGACGCCTGCTCACAGGGCAGCAGCTAG...CCCATTCGTTTTACAGTTGGGATAGGTCCCAGCATAACTGACTTTGGAGCTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp GCCAGTATATACGTGGTCCCCTCTGAGTCCCTGATGTCCGCACCCTTCCTACTGTTGTGTAGGAGTCCATaGAGGCCTTGGCTTCTGCCT +
Preference number: 4 (lower is better)
Translates to: ASIYVVPSESLMSAPFLLLCRSP*RPWLLP
Trigger: AGGCAGAAGCCAAGGCCTTCATGGACTCCTACACAA...CAGTAGGAAGGGTGCGGACATCAGGGACTCAGAGGGGACCACGTATATACTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp TTTTCTTCCCTGTTAGCGGGGCTCCTAGCTCCAAAGTCAGTTATGCTGGGACCTGCCCATCCAGCCTTGTaGTTCCTCCCTGGGGAGAAC +
Preference number: 4 (lower is better)
Translates to: FSSLLAGLLAPKSVMLGPAHPAL*FLPGEN
Trigger: GTTCTCCCCAGGGAGGAAGCACAAGGCTGGATGGGC...AGGTCCCAGCATAACTGACTTTGGAGCTAGGAGCCCCGCTAACAGGGAAGAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS-3UTR GCA 90 bp AAACAGGCCTTGCACCCTATCCGCTGTACTCCAAGTACAGCCTCGTGGCCAGAATCCTTTCCCCTAGACTaGGGAGGCCCTTCCTTTGCT +
Preference number: 4 (lower is better)
Translates to: KQALHPIRCTPSTASWPESFPLD*GGPSFA
Trigger: AGCAAAGGAAGGGCCTCCGCAGTCTAGGGGAAAGGA...TTCTGGCCACGAGGCTGTACTTGGAGTACAGCGGATAGGGTGCAAGGCCTGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp ACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGCATTCAACAAGGCAACAGCAGACGTTCTaGCCTCACAGCACAGGTCTC +
Preference number: 4 (lower is better)
Translates to: THRKPPAQPVFDMGHSTRQQQTF*PHSTGL
Trigger: GAGACCTGTGCTGTGAGGGCAGAACGTCTGCTGTTG...CCTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp TTTTCTTCCCTGTTAGCGGGGCTCCTAGCTCCAAAGTCAGTTATGCTGGGACCTGAAGGCCTTGGCTTCTaGCTGCAGCTCGGCTTCCAG +
Preference number: 4 (lower is better)
Translates to: FSSLLAGLLAPKSVMLGPEGLGF*LQLGFQ
Trigger: CTGGAAGCCGAGCTGCAGGCAGAAGCCAAGGCCTTC...AGGTCCCAGCATAACTGACTTTGGAGCTAGGAGCCCCGCTAACAGGGAAGAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp ATCGGAGGTGTGGTTCTTTGGCATGTAATCTGTGTTGATCCATCCAAATGGGCTCACCGCGGCCCCAGCTaGTACCATCCCAGCCTCAGC +
Preference number: 4 (lower is better)
Translates to: IGGVVLWHVICVDPSKWAHRGPS*YHPSLS
Trigger: GCTGAGGCTGGGATGGTAGCAGCTGGGGCCGCGGTG...AGCCCATTTGGATGGATCAACACAGATTACATGCCAAAGAACCACACCTCCGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp TCCTCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGCGGATGCAGAAGTCATaGCCACAGTCCAGCGAGATG +
Preference number: 4 (lower is better)
Translates to: SSGFWTHRKPPAQPVFDMRMQKS*PQSSEM
Trigger: CATCTCGCTGGACTGTGGCCATGACTTCTGCATCCG...CATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp TCCTCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGCTCCTTGCTCAGTTCTaGGCTCATGACATCCCCCGT +
Preference number: 4 (lower is better)
Translates to: SSGFWTHRKPPAQPVFDMLLAQF*AHDIPR
Trigger: ACGGGGGATGTCATGAGCCCAGAACTGAGCAAGGAG...CATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GCCTCCTCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACAAGATGGCATCCTTCTaGGTAGAGAGGAGGTTCCTC +
Preference number: 4 (lower is better)
Translates to: ASSGFWTHRKPPAQPVFDKMASF*VERRFL
Trigger: GAGGAACCTCCTCTCTACCCAGAAGGATGCCATCTT...GTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGAGGAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp TCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGCCATCCCATAATGTTTaGCCATCACCTCAGCCACGT +
Preference number: 4 (lower is better)
Translates to: SGFWTHRKPPAQPVFDMGPSHNV*PSPQPR
Trigger: ACGTGGCTGAGGTGATGGGCAAACATTATGGGATGG...CCCCATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp CAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACCATCCCATAATGTTTaGCCATCACCTCAGCCACGT +
Preference number: 4 (lower is better)
Translates to: QGGQPSLAFWSSFGNKSPPSHNV*PSPQPR
Trigger: ACGTGGCTGAGGTGATGGGCAAACATTATGGGATGG...TGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp AGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAACCTGGCACGGACTAGTCATCTTCTGTGTTaGCTCTGGGGCTGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: SSFPALSLPTLWQNLARTSHLLC*LWGWLG
Trigger: ACCAAGCCAGCCCCAGAGGCAACACAGAAGATGACT...AGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp GTTCCAGAGAGTAGCAATTATCCAGAGCCAGAAACAGGCCTTGCACCCTATCCGCGTGCTGAGGGGCTGTaGTCAGCACGTCCAAGATGT +
Preference number: 4 (lower is better)
Translates to: VPESSNYPEPETGLAPYPRAEGL*SARPRC
Trigger: ACATCTTGGACGTGCTGAGCACAGCCCCTCAGCACG...CGGATAGGGTGCAAGGCCTGTTTCTGGCTCTGGATAATTGCTACTCTCTGGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp CAGCTCAGCCAGTGTTTGACATGGGGCATTCAACAAGGCCAGTATATACGTGGTTCCTGTGCTAGCTGCTaGCCTGTGAGCAGGCGTCTG +
Preference number: 4 (lower is better)
Translates to: QLSQCLTWGIQQGQYIRGSCASC*PVSRRL
Trigger: CAGACGCCTGCTCACAGGGCAGCAGCTAGCACAGGA...ACCACGTATATACTGGCCTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp ACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGCATTCAACAAGGTCTGCTCTCTCTCCTTaGACAACAGGGCCACACCAT +
Preference number: 4 (lower is better)
Translates to: THRKPPAQPVFDMGHSTRSALSP*TTGPHH
Trigger: ATGGTGTGGCCCTGTTGTGCAAGGAGAGAGAGCAGA...CCTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp TCCCACACTTTGGCAGAACCTGGCACGGACTGCTTTAGCACAGAATGCAATCGGCTTGTGCTTCCTCCCTaGGGAGAACCCAACTGTTGC +
Preference number: 4 (lower is better)
Translates to: SHTLAEPGTDCFSTECNRLVLPP*GEPNCC
Trigger: GCAACAGTTGGGTTCTCCCCAGGGAGGAAGCACAAG...CCGATTGCATTCTGTGCTAAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS-3UTR CCA 90 bp CCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAACTTGTGCTTCCTCCCTaGGGAGAACCCAACTGTTGC +
Preference number: 4 (lower is better)
Translates to: PAKPGLLEQFWKQVTTPELVLPP*GEPNCC
Trigger: GCAACAGTTGGGTTCTCCCCAGGGAGGAAGCACAAG...TTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS-3UTR CCA 90 bp GCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAATTATAGCTCCTCCCTGCACAGCCTaGCCCATCCAGCCTTGTGCT +
Preference number: 4 (lower is better)
Translates to: AWPSGAVLETSHHSRIIAPPCTA*PIQPCA
Trigger: AGCACAAGGCTGGATGGGCCAGGCTGTGCAGGGAGG...AGCTATAATTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS-3UTR CCA 90 bp AAACAGGCCTTGCACCCTATCCGCTGTACTCCAAGTACAGCCTCGTGGCCAGAATTGGGGAATGATGCATaGGACCTGCTTGTCCTGGTC +
Preference number: 4 (lower is better)
Translates to: KQALHPIRCTPSTASWPELGNDA*DLLVLV
Trigger: GACCAGGACAAGCAGGTCCCATGCATCATTCCCCAA...TTCTGGCCACGAGGCTGTACTTGGAGTACAGCGGATAGGGTGCAAGGCCTGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS-3UTR CCA 90 bp CCTTATGTGGTGGGAGATCCTAGGTTCCAGAGAGTAGCAATTATCCAGAGCCAGGGCCCAGCTCCAGCTTaGGGAATGATGCATGGGACC +
Preference number: 4 (lower is better)
Translates to: PYVVGDPRFQRVAIIQSQGPAPA*GMMHGT
Trigger: GGTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCC...CTGGCTCTGGATAATTGCTACTCTCTGGAACCTAGGATCTCCCACCACATAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp ATGTTAAAAGACGGAGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAGCCTTTCCAGACAGATaGAGCAGGTGGGCGGCTCCC +
Preference number: 4 (lower is better)
Translates to: MLKDGARFLHFPFPHFGRAFPDR*SRWAAP
Trigger: GGGAGCCGCCCACCTGCTCCATCTGTCTGGAAAGGC...TCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCTCCGTCTTTTAACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GCCTCCTCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACGTATCCTTCAGCTCTTaGGAGGTATTCAGGATCTGG +
Preference number: 4 (lower is better)
Translates to: ASSGFWTHRKPPAQPVFDVSFSS*EVFRIW
Trigger: CCAGATCCTGAATACCTCCCAAGAGCTGAAGGATAC...GTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGAGGAGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GTTCCAGAGAGTAGCAATTATCCAGAGCCAGAAACAGGCCTTGCACCCTATCCGGCAGCTCCTGGACCTTaGGGTATTTGCCGGACAGCT +
Preference number: 4 (lower is better)
Translates to: VPESSNYPEPETGLAPYPAAPGP*GICRTA
Trigger: AGCTGTCCGGCAAATACCCCAAGGTCCAGGAGCTGC...CGGATAGGGTGCAAGGCCTGTTTCTGGCTCTGGATAATTGCTACTCTCTGGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp TCCCACACTTTGGCAGAACCTGGCACGGACTGCTTTAGCACAGAATGCAATCGGTTGTGTAGGAGTCCATaGAGGCCTTGGCTTCTGCCT +
Preference number: 4 (lower is better)
Translates to: SHTLAEPGTDCFSTECNRLCRSP*RPWLLP
Trigger: AGGCAGAAGCCAAGGCCTTCATGGACTCCTACACAA...CCGATTGCATTCTGTGCTAAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp CCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAATTGTGTAGGAGTCCATaGAGGCCTTGGCTTCTGCCT +
Preference number: 4 (lower is better)
Translates to: PAKPGLLEQFWKQVTTPELCRSP*RPWLLP
Trigger: AGGCAGAAGCCAAGGCCTTCATGGACTCCTACACAA...TTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp GCCAGTATATACGTGGTCCCCTCTGAGTCCCTGATGTCCGCACCCTTCCTACTGGTTTGCTCTCCCGTTTaGCAAGCCGATGACAAAAAG +
Preference number: 4 (lower is better)
Translates to: ASIYVVPSESLMSAPFLLVCSPV*QADDKK
Trigger: CTTTTTGTCATCGGCTTGGCAAACGGGAGAGCAAAC...CAGTAGGAAGGGTGCGGACATCAGGGACTCAGAGGGGACCACGTATATACTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp TTTTCTTCCCTGTTAGCGGGGCTCCTAGCTCCAAAGTCAGTTATGCTGGGACCTTCCTTTCCCCTAGACTaGGGAGGCCCTTCCTTTGCT +
Preference number: 4 (lower is better)
Translates to: FSSLLAGLLAPKSVMLGPSFPLD*GGPSFA
Trigger: AGCAAAGGAAGGGCCTCCGCAGTCTAGGGGAAAGGA...AGGTCCCAGCATAACTGACTTTGGAGCTAGGAGCCCCGCTAACAGGGAAGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp GTGGGAGATCCTAGGTTCCAGAGAGTAGCAATTATCCAGAGCCAGAAACAGGCCAAGGACTTTCCTGAGTaGTGCTCTCCCAGGACAGCC +
Preference number: 4 (lower is better)
Translates to: VGDPRFQRVAIIQSQKQAKDFPE*CSPRTA
Trigger: GGCTGTCCTGGGAGAGCAGCACTCAGGAAAGTCCTT...GGCCTGTTTCTGGCTCTGGATAATTGCTACTCTCTGGAACCTAGGATCTCCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp CCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAAAGTCATCTTCTGTGTTaGCTCTGGGGCTGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: PAKPGLLEQFWKQVTTPESHLLC*LWGWLG
Trigger: ACCAAGCCAGCCCCAGAGGCAACACAGAAGATGACT...TTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp CCTAGCTCCAAAGTCAGTTATGCTGGGACCTATCCCAACTGTAAAACGAATGGGTCCTGTGCTAGCTGCTaGCCTGTGAGCAGGCGTCTG +
Preference number: 4 (lower is better)
Translates to: PSSKVSYAGTYPNCKTNGSCASC*PVSRRL
Trigger: CAGACGCCTGCTCACAGGGCAGCAGCTAGCACAGGA...CCCATTCGTTTTACAGTTGGGATAGGTCCCAGCATAACTGACTTTGGAGCTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp ATGTTAAAAGACGGAGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGATCCTGTGCTAGCTGCTaGCCTGTGAGCAGGCGTCTG +
Preference number: 4 (lower is better)
Translates to: MLKDGARFLHFPFPHFGRSCASC*PVSRRL
Trigger: CAGACGCCTGCTCACAGGGCAGCAGCTAGCACAGGA...TCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCTCCGTCTTTTAACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp AGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAACCTGGCACGGACTGTAGTGCAGAGAAGATaGGCTTGGTGGCTATGTCCT +
Preference number: 4 (lower is better)
Translates to: SSFPALSLPTLWQNLARTVVQRR*AWWLCP
Trigger: AGGACATAGCCACCAAGCGCATCTTCTCTGCACTAC...AGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp TCCTCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGGTAGTGCAGAGAAGATaGGCTTGGTGGCTATGTCCT +
Preference number: 4 (lower is better)
Translates to: SSGFWTHRKPPAQPVFDMVVQRR*AWWLCP
Trigger: AGGACATAGCCACCAAGCGCATCTTCTCTGCACTAC...CATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp GTTCCAGAGAGTAGCAATTATCCAGAGCCAGAAACAGGCCTTGCACCCTATCCGAGGGCCTCCAAGGTCTaGTCTCTCTCCTTGCACAAC +
Preference number: 4 (lower is better)
Translates to: VPESSNYPEPETGLAPYPRASKV*SLSLHN
Trigger: GTTGTGCAAGGAGAGAGAGCAGACCTTGGAGGCCCT...CGGATAGGGTGCAAGGCCTGTTTCTGGCTCTGGATAATTGCTACTCTCTGGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp ATGTTAAAAGACGGAGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAGGCCCAGCTCCAGCTTaGGGAATGATGCATGGGACC +
Preference number: 4 (lower is better)
Translates to: MLKDGARFLHFPFPHFGRGPAPA*GMMHGT
Trigger: GGTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCC...TCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCTCCGTCTTTTAACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp TTTTCTTCCCTGTTAGCGGGGCTCCTAGCTCCAAAGTCAGTTATGCTGGGACCTTGTGTCCCTGGCCAGTaGATGCTTCAGGCAACGGTT +
Preference number: 4 (lower is better)
Translates to: FSSLLAGLLAPKSVMLGPCVPGQ*MLQATV
Trigger: AACCGTTGCCTGAAGCATCCACTGGCCAGGGACACA...AGGTCCCAGCATAACTGACTTTGGAGCTAGGAGCCCCGCTAACAGGGAAGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGCATTCAACAAGGCCAGTATTGTGTCCCTGGCCAGTaGATGCTTCAGGCAACGGTT +
Preference number: 4 (lower is better)
Translates to: VNPQLSQCLTWGIQQGQYCVPGQ*MLQATV
Trigger: AACCGTTGCCTGAAGCATCCACTGGCCAGGGACACA...ATACTGGCCTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTGGGGGTTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GTGGGAGATCCTAGGTTCCAGAGAGTAGCAATTATCCAGAGCCAGAAACAGGCCCTCCTTGCTCAGTTCTaGGCTCATGACATCCCCCGT +
Preference number: 4 (lower is better)
Translates to: VGDPRFQRVAIIQSQKQALLAQF*AHDIPR
Trigger: ACGGGGGATGTCATGAGCCCAGAACTGAGCAAGGAG...GGCCTGTTTCTGGCTCTGGATAATTGCTACTCTCTGGAACCTAGGATCTCCCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR CAA 72 bp TCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTaGACATGGGGCATTCAACAAGGCCAGTATATACGT +
Preference number: 4 (lower is better)
Translates to: SGPTVNPQLSQC*TWGIQQGQYIR
Trigger: ACGTATATACTGGCCTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
3UTR CAA 72 bp AGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTTaGGAAACAAGTCACCACTCCAGAATTATAGCTCTG +
Preference number: 4 (lower is better)
Translates to: REASQAWPSGAV*ETSHHSRIIAL
Trigger: CAGAGCTATAATTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp CCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAAAGCCAGAGAGATTCTTaGTCTCCTGTGCTAGCTGCT +
Preference number: 4 (lower is better)
Translates to: PAKPGLLEQFWKQVTTPESQRDS*SPVLAA
Trigger: AGCAGCTAGCACAGGAGATCAAGAATCTCTCTGGCT...TTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp CAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCAACTAAGAGATCCAGATaGTGGAAGAGAAAGGGTCCT +
Preference number: 4 (lower is better)
Translates to: QGGQPSLAFWSSFGNKSPTKRSR*WKRKGP
Trigger: AGGACCCTTTCTCTTCCAGCATCTGGATCTCTTAGT...TGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060255.14
CDS-3UTR GCA 90 bp ATGTTAAAAGACGGAGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGACGTGCTGAGGGGCTGTaGTCAGCACGTCCAAGATGT +
Preference number: 4 (lower is better)
Translates to: MLKDGARFLHFPFPHFGRRAEGL*SARPRC
Trigger: ACATCTTGGACGTGCTGAGCACAGCCCCTCAGCACG...TCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCTCCGTCTTTTAACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp TTTTCTTCCCTGTTAGCGGGGCTCCTAGCTCCAAAGTCAGTTATGCTGGGACCTTCTGCTCTCTCTCCTTaGACAACAGGGCCACACCAT +
Preference number: 4 (lower is better)
Translates to: FSSLLAGLLAPKSVMLGPSALSP*TTGPHH
Trigger: ATGGTGTGGCCCTGTTGTGCAAGGAGAGAGAGCAGA...AGGTCCCAGCATAACTGACTTTGGAGCTAGGAGCCCCGCTAACAGGGAAGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp CCTTATGTGGTGGGAGATCCTAGGTTCCAGAGAGTAGCAATTATCCAGAGCCAGCACAGTCCAGCGAGATaGGCTCTCGAAGCCTTTCCA +
Preference number: 4 (lower is better)
Translates to: PYVVGDPRFQRVAIIQSQHSPAR*ALEAFP
Trigger: TGGAAAGGCTTCGAGAGCCCATCTCGCTGGACTGTG...CTGGCTCTGGATAATTGCTACTCTCTGGAACCTAGGATCTCCCACCACATAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp TCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGAAGCCACTGAGCAAGTaGTCCAAAAGGAAGGACTTT +
Preference number: 4 (lower is better)
Translates to: SGFWTHRKPPAQPVFDMGKPLSK*SKRKDF
Trigger: AAAGTCCTTCCTTTTGGACCACTTGCTCAGTGGCTT...CCCCATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp TCCTCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGAAGAGATCCAGATGCTaGAAGAGAAAGGGTCCTGAC +
Preference number: 4 (lower is better)
Translates to: SSGFWTHRKPPAQPVFDMKRSRC*KRKGPD
Trigger: GTCAGGACCCTTTCTCTTCCAGCATCTGGATCTCTT...CATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060255.14
CDS-3UTR CCA 90 bp CTCCTAGCTCCAAAGTCAGTTATGCTGGGACCTATCCCAACTGTAAAACGAATGCCGAGGAGCAGCTCCTaGACCTTGGGGTATTTGCCG +
Preference number: 4 (lower is better)
Translates to: LLAPKSVMLGPIPTVKRMPRSSS*TLGYLP
Trigger: CGGCAAATACCCCAAGGTCCAGGAGCTGCTCCTCGG...CATTCGTTTTACAGTTGGGATAGGTCCCAGCATAACTGACTTTGGAGCTAGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp CCTCCTTTTTCTTCCCTGTTAGCGGGGCTCCTAGCTCCAAAGTCAGTTATGCTGCCTCGAACTCCTTCTTaGCGGCTTCCACTTTCCTCA +
Preference number: 4 (lower is better)
Translates to: PPFSSLLAGLLAPKSVMLPRTPS*RLPLSS
Trigger: TGAGGAAAGTGGAAGCCGCCAAGAAGGAGTTCGAGG...CAGCATAACTGACTTTGGAGCTAGGAGCCCCGCTAACAGGGAAGAAAAAGGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp CCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAAAGAAGATGCGCTTGGTaGCTATGTCCTGCTGTCTCA +
Preference number: 4 (lower is better)
Translates to: PAKPGLLEQFWKQVTTPERRCAW*LCPAVS
Trigger: TGAGACAGCAGGACATAGCCACCAAGCGCATCTTCT...TTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp TCCCACACTTTGGCAGAACCTGGCACGGACTGCTTTAGCACAGAATGCAATCGGAGAAGATGCGCTTGGTaGCTATGTCCTGCTGTCTCA +
Preference number: 4 (lower is better)
Translates to: SHTLAEPGTDCFSTECNRRRCAW*LCPAVS
Trigger: TGAGACAGCAGGACATAGCCACCAAGCGCATCTTCT...CCGATTGCATTCTGTGCTAAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp CTCCTAGCTCCAAAGTCAGTTATGCTGGGACCTATCCCAACTGTAAAACGAATGAACAGGGCCACACCATaGCGGGCCAAGATGGCATCC +
Preference number: 4 (lower is better)
Translates to: LLAPKSVMLGPIPTVKRMNRATP*RAKMAS
Trigger: GGATGCCATCTTGGCCCGCCATGGTGTGGCCCTGTT...CATTCGTTTTACAGTTGGGATAGGTCCCAGCATAACTGACTTTGGAGCTAGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp AGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAATTATAGCAAGGAAGGACTTTCCTaGGTGCTGCTCTCCCAGGAC +
Preference number: 4 (lower is better)
Translates to: SLAFWSSFGNKSPLQNYSKEGLS*VLLSQD
Trigger: GTCCTGGGAGAGCAGCACTCAGGAAAGTCCTTCCTT...GCTATAATTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp CCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAAGTTTGCTCTCCCGTTTaGCAAGCCGATGACAAAAAG +
Preference number: 4 (lower is better)
Translates to: PAKPGLLEQFWKQVTTPEVCSPV*QADDKK
Trigger: CTTTTTGTCATCGGCTTGGCAAACGGGAGAGCAAAC...TTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp GTTCCAGAGAGTAGCAATTATCCAGAGCCAGAAACAGGCCTTGCACCCTATCCGCCATCCCATAATGTTTaGCCATCACCTCAGCCACGT +
Preference number: 4 (lower is better)
Translates to: VPESSNYPEPETGLAPYPPSHNV*PSPQPR
Trigger: ACGTGGCTGAGGTGATGGGCAAACATTATGGGATGG...CGGATAGGGTGCAAGGCCTGTTTCTGGCTCTGGATAATTGCTACTCTCTGGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp CAGCTCAGCCAGTGTTTGACATGGGGCATTCAACAAGGCCAGTATATACGTGGTTCTTTGTTTACCCACTaGCTCTCAGGAGCAGGGAGG +
Preference number: 4 (lower is better)
Translates to: QLSQCLTWGIQQGQYIRGSLFTH*LSGAGR
Trigger: CCTCCCTGCTCCTGAGAGGCAGTGGGTAAACAAAGA...ACCACGTATATACTGGCCTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp ATCGGAGGTGTGGTTCTTTGGCATGTAATCTGTGTTGATCCATCCAAATGGGCTCGTGCTGAGGGGCTGTaGTCAGCACGTCCAAGATGT +
Preference number: 4 (lower is better)
Translates to: IGGVVLWHVICVDPSKWARAEGL*SARPRC
Trigger: ACATCTTGGACGTGCTGAGCACAGCCCCTCAGCACG...AGCCCATTTGGATGGATCAACACAGATTACATGCCAAAGAACCACACCTCCGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp CCTAGCTCCAAAGTCAGTTATGCTGGGACCTATCCCAACTGTAAAACGAATGGGAGGGCCTCCAAGGTCTaGTCTCTCTCCTTGCACAAC +
Preference number: 4 (lower is better)
Translates to: PSSKVSYAGTYPNCKTNGRASKV*SLSLHN
Trigger: GTTGTGCAAGGAGAGAGAGCAGACCTTGGAGGCCCT...CCCATTCGTTTTACAGTTGGGATAGGTCCCAGCATAACTGACTTTGGAGCTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp CCTAGCTCCAAAGTCAGTTATGCTGGGACCTATCCCAACTGTAAAACGAATGGGCGGATGCAGAAGTCATaGCCACAGTCCAGCGAGATG +
Preference number: 4 (lower is better)
Translates to: PSSKVSYAGTYPNCKTNGRMQKS*PQSSEM
Trigger: CATCTCGCTGGACTGTGGCCATGACTTCTGCATCCG...CCCATTCGTTTTACAGTTGGGATAGGTCCCAGCATAACTGACTTTGGAGCTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp TCCCACACTTTGGCAGAACCTGGCACGGACTGCTTTAGCACAGAATGCAATCGGGTATCCTTCAGCTCTTaGGAGGTATTCAGGATCTGG +
Preference number: 4 (lower is better)
Translates to: SHTLAEPGTDCFSTECNRVSFSS*EVFRIW
Trigger: CCAGATCCTGAATACCTCCCAAGAGCTGAAGGATAC...CCGATTGCATTCTGTGCTAAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp CCTTATGTGGTGGGAGATCCTAGGTTCCAGAGAGTAGCAATTATCCAGAGCCAGTGTTGCCTCTGGGGCTaGCTTGGTCTTTGTTTACCC +
Preference number: 4 (lower is better)
Translates to: PYVVGDPRFQRVAIIQSQCCLWG*LGLCLP
Trigger: GGGTAAACAAAGACCAAGCCAGCCCCAGAGGCAACA...CTGGCTCTGGATAATTGCTACTCTCTGGAACCTAGGATCTCCCACCACATAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp CCTTATGTGGTGGGAGATCCTAGGTTCCAGAGAGTAGCAATTATCCAGAGCCAGCCTCGAACTCCTTCTTaGCGGCTTCCACTTTCCTCA +
Preference number: 4 (lower is better)
Translates to: PYVVGDPRFQRVAIIQSQPRTPS*RLPLSS
Trigger: TGAGGAAAGTGGAAGCCGCCAAGAAGGAGTTCGAGG...CTGGCTCTGGATAATTGCTACTCTCTGGAACCTAGGATCTCCCACCACATAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGCATTCAACAAGGCCAGTATAGAAGATGCGCTTGGTaGCTATGTCCTGCTGTCTCA +
Preference number: 4 (lower is better)
Translates to: VNPQLSQCLTWGIQQGQYRRCAW*LCPAVS
Trigger: TGAGACAGCAGGACATAGCCACCAAGCGCATCTTCT...ATACTGGCCTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTGGGGGTTTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp AGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAATTATAGCTGCTGCTGTTTCCCATaGAGCTTCGTTTGCTCTCCC +
Preference number: 4 (lower is better)
Translates to: SLAFWSSFGNKSPLQNYSCCCFP*SFVCSP
Trigger: GGGAGAGCAAACGAAGCTTCATGGGAAACAGCAGCA...GCTATAATTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp CCTTATGTGGTGGGAGATCCTAGGTTCCAGAGAGTAGCAATTATCCAGAGCCAGAGCCAGAGAGATTCTTaGTCTCCTGTGCTAGCTGCT +
Preference number: 4 (lower is better)
Translates to: PYVVGDPRFQRVAIIQSQSQRDS*SPVLAA
Trigger: AGCAGCTAGCACAGGAGATCAAGAATCTCTCTGGCT...CTGGCTCTGGATAATTGCTACTCTCTGGAACCTAGGATCTCCCACCACATAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp ATCGGAGGTGTGGTTCTTTGGCATGTAATCTGTGTTGATCCATCCAAATGGGCTAAGGACTTTCCTGAGTaGTGCTCTCCCAGGACAGCC +
Preference number: 4 (lower is better)
Translates to: IGGVVLWHVICVDPSKWAKDFPE*CSPRTA
Trigger: GGCTGTCCTGGGAGAGCAGCACTCAGGAAAGTCCTT...AGCCCATTTGGATGGATCAACACAGATTACATGCCAAAGAACCACACCTCCGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp AGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAATTATAGCTCTTTGTTTACCCACTaGCTCTCAGGAGCAGGGAGG +
Preference number: 4 (lower is better)
Translates to: SLAFWSSFGNKSPLQNYSSLFTH*LSGAGR
Trigger: CCTCCCTGCTCCTGAGAGGCAGTGGGTAAACAAAGA...GCTATAATTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp ATGTTAAAAGACGGAGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAAGTCATCTTCTGTGTTaGCTCTGGGGCTGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: MLKDGARFLHFPFPHFGRSHLLC*LWGWLG
Trigger: ACCAAGCCAGCCCCAGAGGCAACACAGAAGATGACT...TCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCTCCGTCTTTTAACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp CTCCTAGCTCCAAAGTCAGTTATGCTGGGACCTATCCCAACTGTAAAACGAATGAGGGCCTCCAAGGTCTaGTCTCTCTCCTTGCACAAC +
Preference number: 4 (lower is better)
Translates to: LLAPKSVMLGPIPTVKRMRASKV*SLSLHN
Trigger: GTTGTGCAAGGAGAGAGAGCAGACCTTGGAGGCCCT...CATTCGTTTTACAGTTGGGATAGGTCCCAGCATAACTGACTTTGGAGCTAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp ATCGGAGGTGTGGTTCTTTGGCATGTAATCTGTGTTGATCCATCCAAATGGGCTTGTGTCCCTGGCCAGTaGATGCTTCAGGCAACGGTT +
Preference number: 4 (lower is better)
Translates to: IGGVVLWHVICVDPSKWACVPGQ*MLQATV
Trigger: AACCGTTGCCTGAAGCATCCACTGGCCAGGGACACA...AGCCCATTTGGATGGATCAACACAGATTACATGCCAAAGAACCACACCTCCGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp AGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAATTATAGCTGTTGCCTCTGGGGCTaGCTTGGTCTTTGTTTACCC +
Preference number: 4 (lower is better)
Translates to: SLAFWSSFGNKSPLQNYSCCLWG*LGLCLP
Trigger: GGGTAAACAAAGACCAAGCCAGCCCCAGAGGCAACA...GCTATAATTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp CCTAGCTCCAAAGTCAGTTATGCTGGGACCTATCCCAACTGTAAAACGAATGGGCGTTTGCCAAGCCGATaGCAAAAAGCAGTGACTGAC +
Preference number: 4 (lower is better)
Translates to: PSSKVSYAGTYPNCKTNGRLPSR*QKAVTD
Trigger: GTCAGTCACTGCTTTTTGTCATCGGCTTGGCAAACG...CCCATTCGTTTTACAGTTGGGATAGGTCCCAGCATAACTGACTTTGGAGCTAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR TCA 90 bp ATCGGAGGTGTGGTTCTTTGGCATGTAATCTGTGTTGATCCATCCAAATGGGCTTGCTGCTGTTTCCCATaGAGCTTCGTTTGCTCTCCC +
Preference number: 4 (lower is better)
Translates to: IGGVVLWHVICVDPSKWACCCFP*SFVCSP
Trigger: GGGAGAGCAAACGAAGCTTCATGGGAAACAGCAGCA...AGCCCATTTGGATGGATCAACACAGATTACATGCCAAAGAACCACACCTCCGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp ATCGGAGGTGTGGTTCTTTGGCATGTAATCTGTGTTGATCCATCCAAATGGGCTTCTTTGTTTACCCACTaGCTCTCAGGAGCAGGGAGG +
Preference number: 4 (lower is better)
Translates to: IGGVVLWHVICVDPSKWASLFTH*LSGAGR
Trigger: CCTCCCTGCTCCTGAGAGGCAGTGGGTAAACAAAGA...AGCCCATTTGGATGGATCAACACAGATTACATGCCAAAGAACCACACCTCCGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp CTCCTAGCTCCAAAGTCAGTTATGCTGGGACCTATCCCAACTGTAAAACGAATGTCTGCTCTCTCTCCTTaGACAACAGGGCCACACCAT +
Preference number: 4 (lower is better)
Translates to: LLAPKSVMLGPIPTVKRMSALSP*TTGPHH
Trigger: ATGGTGTGGCCCTGTTGTGCAAGGAGAGAGAGCAGA...CATTCGTTTTACAGTTGGGATAGGTCCCAGCATAACTGACTTTGGAGCTAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp ATGTTAAAAGACGGAGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAAAGATGGCATCCTTCTaGGTAGAGAGGAGGTTCCTC +
Preference number: 4 (lower is better)
Translates to: MLKDGARFLHFPFPHFGRKMASF*VERRFL
Trigger: GAGGAACCTCCTCTCTACCCAGAAGGATGCCATCTT...TCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCTCCGTCTTTTAACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp CCTAGCTCCAAAGTCAGTTATGCTGGGACCTATCCCAACTGTAAAACGAATGGGAAGATGGCATCCTTCTaGGTAGAGAGGAGGTTCCTC +
Preference number: 4 (lower is better)
Translates to: PSSKVSYAGTYPNCKTNGKMASF*VERRFL
Trigger: GAGGAACCTCCTCTCTACCCAGAAGGATGCCATCTT...CCCATTCGTTTTACAGTTGGGATAGGTCCCAGCATAACTGACTTTGGAGCTAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp ACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGCATTCAACAAGGATCCAGATGCTGGATTaGTACCATCCCATAATGTTT +
Preference number: 4 (lower is better)
Translates to: THRKPPAQPVFDMGHSTRIQMLD*YHPIMF
Trigger: AAACATTATGGGATGGTACCAATCCAGCATCTGGAT...CCTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp ATGTTAAAAGACGGAGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAGTTTGCTCTCCCGTTTaGCAAGCCGATGACAAAAAG +
Preference number: 4 (lower is better)
Translates to: MLKDGARFLHFPFPHFGRVCSPV*QADDKK
Trigger: CTTTTTGTCATCGGCTTGGCAAACGGGAGAGCAAAC...TCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCTCCGTCTTTTAACAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR GCA 90 bp ATCGGAGGTGTGGTTCTTTGGCATGTAATCTGTGTTGATCCATCCAAATGGGCTGTAGTGCAGAGAAGATaGGCTTGGTGGCTATGTCCT +
Preference number: 4 (lower is better)
Translates to: IGGVVLWHVICVDPSKWAVVQRR*AWWLCP
Trigger: AGGACATAGCCACCAAGCGCATCTTCTCTGCACTAC...AGCCCATTTGGATGGATCAACACAGATTACATGCCAAAGAACCACACCTCCGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp CAGCTCAGCCAGTGTTTGACATGGGGCATTCAACAAGGCCAGTATATACGTGGTAAGCCACTGAGCAAGTaGTCCAAAAGGAAGGACTTT +
Preference number: 4 (lower is better)
Translates to: QLSQCLTWGIQQGQYIRGKPLSK*SKRKDF
Trigger: AAAGTCCTTCCTTTTGGACCACTTGCTCAGTGGCTT...ACCACGTATATACTGGCCTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAATTATAGCTGTATCCTTCAGCTCTTaGGAGGTATTCAGGATCTGG +
Preference number: 4 (lower is better)
Translates to: AWPSGAVLETSHHSRIIAVSFSS*EVFRIW
Trigger: CCAGATCCTGAATACCTCCCAAGAGCTGAAGGATAC...AGCTATAATTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp GTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAACCTGGCACGGACTGCTTTTTGTCTTACCTGGATTaGTACCATCCCATAATGTTT +
Preference number: 4 (lower is better)
Translates to: VSCTFPSHTLAEPGTDCFLSYLD*YHPIMF
Trigger: AAACATTATGGGATGGTACCAATCCAGGTAAGACAA...AAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060255.14
CDS-3UTR CCA 90 bp ATCGGAGGTGTGGTTCTTTGGCATGTAATCTGTGTTGATCCATCCAAATGGGCTAAGCCACTGAGCAAGTaGTCCAAAAGGAAGGACTTT +
Preference number: 4 (lower is better)
Translates to: IGGVVLWHVICVDPSKWAKPLSK*SKRKDF
Trigger: AAAGTCCTTCCTTTTGGACCACTTGCTCAGTGGCTT...AGCCCATTTGGATGGATCAACACAGATTACATGCCAAAGAACCACACCTCCGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CCA 90 bp CCTAGCTCCAAAGTCAGTTATGCTGGGACCTATCCCAACTGTAAAACGAATGGGATCCAGATGCTGGATTaGTACCATCCCATAATGTTT +
Preference number: 4 (lower is better)
Translates to: PSSKVSYAGTYPNCKTNGIQMLD*YHPIMF
Trigger: AAACATTATGGGATGGTACCAATCCAGCATCTGGAT...CCCATTCGTTTTACAGTTGGGATAGGTCCCAGCATAACTGACTTTGGAGCTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000102661.4
CDS GCA 90 bp AGCAGCCAACGCCGCTGCTGCCATGCCTGCGCCCACCACACCCCCTaGCAGGCCCATGAGCCCAGCACCTACAGCGCCCCCTACCGCGGC +
Preference number: 5 (lower is better)
Translates to: SSQRRCCHACAHHTP*QAHEPSTYSAPYRG
Trigger: GCCGCGGTAGGGGGCGCTGTAGGTGCTGGGCTCATGGGCCTGGCAGGGGGTGTGGTGGGCGCAGGCATGGCAGCAGCGGCGTTGGCTGCT
73% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CCA 90 bp CCAGCGAGATGGGCTCTCGAAGCCTTTCCAGACAGATGGAGCAGGTaGGCGGCTCCCGGGTTGGGGAGGGACGGTGTCCCAGGCCCAGCT +
Preference number: 5 (lower is better)
Translates to: PARWALEAFPDRWSR*AAPGLGRDGVPGPA
Trigger: AGCTGGGCCTGGGACACCGTCCCTCCCCAACCCGGGAGCCGCCCACCTGCTCCATCTGTCTGGAAAGGCTTCGAGAGCCCATCTCGCTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CCA 90 bp GCTCCCGGGTTGGGGAGGGACGGTGTCCCAGGCCCAGCTCCAGCTTaGGGAATGATGCATGGGACCTGCTTGTCCTGGTCCCTCCCTGCA +
Preference number: 5 (lower is better)
Translates to: APGLGRDGVPGPAPA*GMMHGTCLSWSLPA
Trigger: TGCAGGGAGGGACCAGGACAAGCAGGTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCTGGGACACCGTCCCTCCCCAACCCGGGAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS TCA 90 bp GGTTGGGGAGGGACGGTGTCCCAGGCCCAGCTCCAGCTTGGGGAATaGTGCATGGGACCTGCTTGTCCTGGTCCCTCCCTGCACAGCCTG +
Preference number: 5 (lower is better)
Translates to: GWGGTVSQAQLQLGE*CMGPACPGPSLHSL
Trigger: CAGGCTGTGCAGGGAGGGACCAGGACAAGCAGGTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCTGGGACACCGTCCCTCCCCAACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS CCA 90 bp GAGGGACGGTGTCCCAGGCCCAGCTCCAGCTTGGGGAATGATGCATaGGACCTGCTTGTCCTGGTCCCTCCCTGCACAGCCTGGCCCATC +
Preference number: 5 (lower is better)
Translates to: EGRCPRPSSSLGNDA*DLLVLVPPCTAWPI
Trigger: GATGGGCCAGGCTGTGCAGGGAGGGACCAGGACAAGCAGGTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCTGGGACACCGTCCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS GCA 90 bp GGTGTCCCAGGCCCAGCTCCAGCTTGGGGAATGATGCATGGGACCTaGTTGTCCTGGTCCCTCCCTGCACAGCCTGGCCCATCCAGCCTT +
Preference number: 5 (lower is better)
Translates to: GVPGPAPAWGMMHGT*LSWSLPAQPGPSSL
Trigger: AAGGCTGGATGGGCCAGGCTGTGCAGGGAGGGACCAGGACAAGCAGGTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCTGGGACACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS GCA 90 bp AGCGGGCCCGTTTCCCGAGGAGCAGCTCCTGGACCTTGGGGTATTTaGCGGACAGCTTCTGGAGTATGTCACCCACGTGCCCTTGCCCTG +
Preference number: 5 (lower is better)
Translates to: SGPVSRGAAPGPWGI*RTASGVCHPRALAL
Trigger: CAGGGCAAGGGCACGTGGGTGACATACTCCAGAAGCTGTCCGGCAAATACCCCAAGGTCCAGGAGCTGCTCCTCGGGAAACGGGCCCGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 90 bp TTCCCCATCCAGCCAGAGAGATTCTTGATCTCCTGTGCTAGCTGCTaGCCTGTGAGCAGGCGTCTGTCTCCCCTGGCCACGGCACGCCCC +
Preference number: 5 (lower is better)
Translates to: FPIQPERFLISCASC*PVSRRLSPLATARP
Trigger: GGGGCGTGCCGTGGCCAGGGGAGACAGACGCCTGCTCACAGGGCAGCAGCTAGCACAGGAGATCAAGAATCTCTCTGGCTGGATGGGGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp ACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGCATTCAACAAGGTGGGCGGCTCCCGGGTaGGGGAGGGACGGTGTCCCA +
Preference number: 5 (lower is better)
Translates to: THRKPPAQPVFDMGHSTRWAAPG*GRDGVP
Trigger: TGGGACACCGTCCCTCCCCAACCCGGGAGCCGCCCA...CCTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 90 bp AGCTTGGGGAATGATGCATGGGACCTGCTTGTCCTGGTCCCTCCCTaGACAGCCTGGCCCATCCAGCCTTGTGCTTCCTCCCTGGGGAGA +
Preference number: 5 (lower is better)
Translates to: SLGNDAWDLLVLVPP*TAWPIQPCASSLGR
Trigger: TCTCCCCAGGGAGGAAGCACAAGGCTGGATGGGCCAGGCTGTGCAGGGAGGGACCAGGACAAGCAGGTCCCATGCATCATTCCCCAAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS GCA 90 bp GATGAGGCCTCCGGAGGCATTGATTCGTACCAACAGCAGACGTTCTaGCCTCACAGCACAGGTCTCCTGCAGTGCAGGGGGCAGTGGCCG +
Preference number: 5 (lower is better)
Translates to: DEASGGIDSYQQQTF*PHSTGLLQCRGQWP
Trigger: CGGCCACTGCCCCCTGCACTGCAGGAGACCTGTGCTGTGAGGGCAGAACGTCTGCTGTTGGTACGAATCAATGCCTCCGGAGGCCTCATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 90 bp GTCTTCCCCATCCAGCCAGAGAGATTCTTGATCTCCTGTGCTAGCTaGTGCCCTGTGAGCAGGCGTCTGTCTCCCCTGGCCACGGCACGC +
Preference number: 5 (lower is better)
Translates to: VFPIQPERFLISCAS*CPVSRRLSPLATAR
Trigger: GCGTGCCGTGGCCAGGGGAGACAGACGCCTGCTCACAGGGCAGCAGCTAGCACAGGAGATCAAGAATCTCTCTGGCTGGATGGGGAAGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CCA 90 bp GGAGGTAACAGCGGGCCCGTTTCCCGAGGAGCAGCTCCTGGACCTTaGGGTATTTGCCGGACAGCTTCTGGAGTATGTCACCCACGTGCC +
Preference number: 5 (lower is better)
Translates to: GGNSGPVSRGAAPGP*GICRTASGVCHPRA
Trigger: GGCACGTGGGTGACATACTCCAGAAGCTGTCCGGCAAATACCCCAAGGTCCAGGAGCTGCTCCTCGGGAAACGGGCCCGCTGTTACCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 90 bp GCTTGTCCTGGTCCCTCCCTGCACAGCCTGGCCCATCCAGCCTTGTaGTTCCTCCCTGGGGAGAACCCAACTGTTGCTGCTGTTTCCCAT +
Preference number: 5 (lower is better)
Translates to: ACPGPSLHSLAHPAL*FLPGENPTVAAVSH
Trigger: ATGGGAAACAGCAGCAACAGTTGGGTTCTCCCCAGGGAGGAAGCACAAGGCTGGATGGGCCAGGCTGTGCAGGGAGGGACCAGGACAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS-3UTR CAA 90 bp GTTCCAGAGAGTAGCAATTATCCAGAGCCAGAAACAGGCCTTGCACCCTATCCGTGGGCGGCTCCCGGGTaGGGGAGGGACGGTGTCCCA +
Preference number: 5 (lower is better)
Translates to: VPESSNYPEPETGLAPYPWAAPG*GRDGVP
Trigger: TGGGACACCGTCCCTCCCCAACCCGGGAGCCGCCCA...CGGATAGGGTGCAAGGCCTGTTTCTGGCTCTGGATAATTGCTACTCTCTGGAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp GTGGGAGATCCTAGGTTCCAGAGAGTAGCAATTATCCAGAGCCAGAAACAGGCCTGGGCGGCTCCCGGGTaGGGGAGGGACGGTGTCCCA +
Preference number: 5 (lower is better)
Translates to: VGDPRFQRVAIIQSQKQAWAAPG*GRDGVP
Trigger: TGGGACACCGTCCCTCCCCAACCCGGGAGCCGCCCA...GGCCTGTTTCTGGCTCTGGATAATTGCTACTCTCTGGAACCTAGGATCTCCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CCA 90 bp GCCTCCAAGGTCTGCTCTCTCTCCTTGCACAACAGGGCCACACCATaGCGGGCCAAGATGGCATCCTTCTGGGTAGAGAGGAGGTTCCTC +
Preference number: 5 (lower is better)
Translates to: ASKVCSLSLHNRATP*RAKMASFWVERRFL
Trigger: GAGGAACCTCCTCTCTACCCAGAAGGATGCCATCTTGGCCCGCCATGGTGTGGCCCTGTTGTGCAAGGAGAGAGAGCAGACCTTGGAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp TCCTCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGCTGGCCCATCCAGCCTaGTGCTTCCTCCCTGGGGAG +
Preference number: 5 (lower is better)
Translates to: SSGFWTHRKPPAQPVFDMLAHPA*CFLPGE
Trigger: CTCCCCAGGGAGGAAGCACAAGGCTGGATGGGCCAG...CATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGAGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS-3UTR CAA 90 bp GCCTCCTCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGCATGGGACCTGCTaGTCCTGGTCCCTCCCTGCA +
Preference number: 5 (lower is better)
Translates to: ASSGFWTHRKPPAQPVFDMHGTC*SWSLPA
Trigger: TGCAGGGAGGGACCAGGACAAGCAGGTCCCATGCAT...GTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGAGGAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS-3UTR CAA 90 bp GGACACACATCTGGACACCCAACTGAAGAGCAGGGAGGCCAGCCAAGCCTGGCCTCCTCGAACTCCTTCTaGGCGGCTTCCACTTTCCTC +
Preference number: 5 (lower is better)
Translates to: GHTSGHPTEEQGGQPSLASSNSF*AASTFL
Trigger: GAGGAAAGTGGAAGCCGCCAAGAAGGAGTTCGAGGA...GGCCAGGCTTGGCTGGCCTCCCTGCTCTTCAGTTGGGTGTCCAGATGTGTGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CCA 90 bp CAGCCTGGGATGCGGTGTGTGCTGAAGCATCGGATGCAGAAGTCATaGCCACAGTCCAGCGAGATGGGCTCTCGAAGCCTTTCCAGACAG +
Preference number: 5 (lower is better)
Translates to: QPGMRCVLKHRMQKS*PQSSEMGSRSLSRQ
Trigger: CTGTCTGGAAAGGCTTCGAGAGCCCATCTCGCTGGACTGTGGCCATGACTTCTGCATCCGATGCTTCAGCACACACCGCATCCCAGGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp GCCTCCTCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACGCGGAGGCCCTTCCTTaGCTTACAGATCTTCCGGCA +
Preference number: 5 (lower is better)
Translates to: ASSGFWTHRKPPAQPVFDAEALP*LTDLPA
Trigger: TGCCGGAAGATCTGTAAGCAAAGGAAGGGCCTCCGC...GTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGAGGAGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 90 bp GGGGCAGTGGCCGCTGTGGTAGGAGTTTCATCCTTTCCCCTAGACTaGGGAGGCCCTTCCTTTGCTTACAGATCTTCCGGCATTCAGGAC +
Preference number: 5 (lower is better)
Translates to: GAVAAVVGVSSFPLD*GGPSFAYRSSGIQD
Trigger: GTCCTGAATGCCGGAAGATCTGTAAGCAAAGGAAGGGCCTCCGCAGTCTAGGGGAAAGGATGAAACTCCTACCACAGCGGCCACTGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 90 bp ATTCGTACCAACAGCAGACGTTCTGCCCTCACAGCACAGGTCTCCTaGAGTGCAGGGGGCAGTGGCCGCTGTGGTAGGAGTTTCATCCTT +
Preference number: 5 (lower is better)
Translates to: IRTNSRRSALTAQVS*SAGGSGRCGRSFIL
Trigger: AAGGATGAAACTCCTACCACAGCGGCCACTGCCCCCTGCACTGCAGGAGACCTGTGCTGTGAGGGCAGAACGTCTGCTGTTGGTACGAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CCA 90 bp TTGCACAACAGGGCCACACCATGGCGGGCCAAGATGGCATCCTTCTaGGTAGAGAGGAGGTTCCTCATCGTGTCAGGCAGGACTCGTAGT +
Preference number: 5 (lower is better)
Translates to: LHNRATPWRAKMASF*VERRFLIVSGRTRS
Trigger: ACTACGAGTCCTGCCTGACACGATGAGGAACCTCCTCTCTACCCAGAAGGATGCCATCTTGGCCCGCCATGGTGTGGCCCTGTTGTGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CCA 90 bp GAGGGACGGTGTCCCAGGCCCAGCTCCAGCTTGGGGAATGATGCATaGGACCAACTGTTGCTGCTGTTTCCCATGAAGCTTCGTTTGCTC +
Preference number: 5 (lower is better)
Translates to: EGRCPRPSSSLGNDA*DQLLLLFPMKLRLL
Trigger: GAGCAAACGAAGCTTCATGGGAAACAGCAGCAACAGTTGGTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCTGGGACACCGTCCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp GTTCCAGAGAGTAGCAATTATCCAGAGCCAGAAACAGGCCTTGCACCCTATCCGCTGGCCCATCCAGCCTaGTGCTTCCTCCCTGGGGAG +
Preference number: 5 (lower is better)
Translates to: VPESSNYPEPETGLAPYPLAHPA*CFLPGE
Trigger: CTCCCCAGGGAGGAAGCACAAGGCTGGATGGGCCAG...CGGATAGGGTGCAAGGCCTGTTTCTGGCTCTGGATAATTGCTACTCTCTGGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS-3UTR CAA 90 bp GCCAGTATATACGTGGTCCCCTCTGAGTCCCTGATGTCCGCACCCTTCCTACTGGCGGAGGCCCTTCCTTaGCTTACAGATCTTCCGGCA +
Preference number: 5 (lower is better)
Translates to: ASIYVVPSESLMSAPFLLAEALP*LTDLPA
Trigger: TGCCGGAAGATCTGTAAGCAAAGGAAGGGCCTCCGC...CAGTAGGAAGGGTGCGGACATCAGGGACTCAGAGGGGACCACGTATATACTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp ACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGCATTCAACAAGGAGCAGCTCCTGGACCTaGGGGTATTTGCCGGACAGC +
Preference number: 5 (lower is better)
Translates to: THRKPPAQPVFDMGHSTRSSSWT*GYLPDS
Trigger: GCTGTCCGGCAAATACCCCAAGGTCCAGGAGCTGCT...CCTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp GCCTCCTCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACCTCTCGGTCCCCTCCTaGAACTCTCTCATCTTCCTC +
Preference number: 5 (lower is better)
Translates to: ASSGFWTHRKPPAQPVFDLSVPS*NSLIFL
Trigger: GAGGAAGATGAGAGAGTTCAAGGAGGGGACCGAGAG...GTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGAGGAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS TCA 90 bp CTCTGGGCCTGCCGCTGTCACCAGATTCCAGGCTTGGTAAGCCACTaGGCAAGTGGTCCAAAAGGAAGGACTTTCCTGAGTGCTGCTCTC +
Preference number: 5 (lower is better)
Translates to: LWACRCHQIPGLVSH*ASGPKGRTFLSAAL
Trigger: GAGAGCAGCACTCAGGAAAGTCCTTCCTTTTGGACCACTTGCTCAGTGGCTTACCAAGCCTGGAATCTGGTGACAGCGGCAGGCCCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 90 bp AAGCCACTGAGCAAGTGGTCCAAAAGGAAGGACTTTCCTGAGTGCTaGTCTCCCAGGACAGCCAATAAGCAGACGGGTGTGTCCCTGGCC +
Preference number: 5 (lower is better)
Translates to: KPLSKWSKRKDFPEC*SPRTANKQTGVSLA
Trigger: GGCCAGGGACACACCCGTCTGCTTATTGGCTGTCCTGGGAGAGCAGCACTCAGGAAAGTCCTTCCTTTTGGACCACTTGCTCAGTGGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp CAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCAGTGAGAGCACAGAGCTaGACCCTTGTCTCCTTGCTC +
Preference number: 5 (lower is better)
Translates to: QGGQPSLAFWSSFGNKSPVRAQS*TLVSLL
Trigger: GAGCAAGGAGACAAGGGTCAAGCTCTGTGCTCTCAC...TGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp AGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAACCTGGCACGGACTCTCACTCCAGTACCCTaGACAGCGGCTCTTAGCGTG +
Preference number: 5 (lower is better)
Translates to: SSFPALSLPTLWQNLARTLTPVP*TAALSV
Trigger: CACGCTAAGAGCCGCTGTCAAGGGTACTGGAGTGAG...AGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 90 bp GGTAAGCCACTGAGCAAGTGGTCCAAAAGGAAGGACTTTCCTGAGTaGTGCTCTCCCAGGACAGCCAATAAGCAGACGGGTGTGTCCCTG +
Preference number: 5 (lower is better)
Translates to: GKPLSKWSKRKDFPE*CSPRTANKQTGVSL
Trigger: CAGGGACACACCCGTCTGCTTATTGGCTGTCCTGGGAGAGCAGCACTCAGGAAAGTCCTTCCTTTTGGACCACTTGCTCAGTGGCTTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CCA 90 bp CTGCCGCTGTCACCAGATTCCAGGCTTGGTAAGCCACTGAGCAAGTaGTCCAAAAGGAAGGACTTTCCTGAGTGCTGCTCTCCCAGGACA +
Preference number: 5 (lower is better)
Translates to: LPLSPDSRLGKPLSK*SKRKDFPECCSPRT
Trigger: TGTCCTGGGAGAGCAGCACTCAGGAAAGTCCTTCCTTTTGGACCACTTGCTCAGTGGCTTACCAAGCCTGGAATCTGGTGACAGCGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CCA 90 bp TGTAGGCCCGGAAATGGTGGGAGAAGTCATCTTCTGTGTTGCCTCTaGGGCTGGCTTGGTCTTTGTTTACCCACTGCCTCTCAGGAGCAG +
Preference number: 5 (lower is better)
Translates to: CRPGNGGRSHLLCCL*GWLGLCLPTASQEQ
Trigger: CTGCTCCTGAGAGGCAGTGGGTAAACAAAGACCAAGCCAGCCCCAGAGGCAACACAGAAGATGACTTCTCCCACCATTTCCGGGCCTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp GTTCCAGAGAGTAGCAATTATCCAGAGCCAGAAACAGGCCTTGCACCCTATCCGATGCATGGGACCTGCTaGTCCTGGTCCCTCCCTGCA +
Preference number: 5 (lower is better)
Translates to: VPESSNYPEPETGLAPYPMHGTC*SWSLPA
Trigger: TGCAGGGAGGGACCAGGACAAGCAGGTCCCATGCAT...CGGATAGGGTGCAAGGCCTGTTTCTGGCTCTGGATAATTGCTACTCTCTGGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS-3UTR CAA 90 bp TCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGTTGACCCTTGTCTCCTaGCTCAGTTCTGGGCTCATG +
Preference number: 5 (lower is better)
Translates to: SGFWTHRKPPAQPVFDMGLTLVS*LSSGLM
Trigger: CATGAGCCCAGAACTGAGCAAGGAGACAAGGGTCAA...CCCCATGTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp GTGGGAGATCCTAGGTTCCAGAGAGTAGCAATTATCCAGAGCCAGAAACAGGCCAGCAGCTCCTGGACCTaGGGGTATTTGCCGGACAGC +
Preference number: 5 (lower is better)
Translates to: VGDPRFQRVAIIQSQKQASSSWT*GYLPDS
Trigger: GCTGTCCGGCAAATACCCCAAGGTCCAGGAGCTGCT...GGCCTGTTTCTGGCTCTGGATAATTGCTACTCTCTGGAACCTAGGATCTCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp GTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAACCTGGCACGGACTGCTTTCTCACTCCAGTACCCTaGACAGCGGCTCTTAGCGTG +
Preference number: 5 (lower is better)
Translates to: VSCTFPSHTLAEPGTDCFLTPVP*TAALSV
Trigger: CACGCTAAGAGCCGCTGTCAAGGGTACTGGAGTGAG...AAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp AAACAGGCCTTGCACCCTATCCGCTGTACTCCAAGTACAGCCTCGTGGCCAGAACTCTCGGTCCCCTCCTaGAACTCTCTCATCTTCCTC +
Preference number: 5 (lower is better)
Translates to: KQALHPIRCTPSTASWPELSVPS*NSLIFL
Trigger: GAGGAAGATGAGAGAGTTCAAGGAGGGGACCGAGAG...TTCTGGCCACGAGGCTGTACTTGGAGTACAGCGGATAGGGTGCAAGGCCTGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 90 bp CCAAGATGTAGGCCCGGAAATGGTGGGAGAAGTCATCTTCTGTGTTaGCTCTGGGGCTGGCTTGGTCTTTGTTTACCCACTGCCTCTCAG +
Preference number: 5 (lower is better)
Translates to: PRCRPGNGGRSHLLC*LWGWLGLCLPTASQ
Trigger: CTGAGAGGCAGTGGGTAAACAAAGACCAAGCCAGCCCCAGAGGCAACACAGAAGATGACTTCTCCCACCATTTCCGGGCCTACATCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CCA 90 bp TGGTGGCTATGTCCTGCTGTCTCACGTACTCCTCGAACTCCTTCTTaGCGGCTTCCACTTTCCTCAGATCATGGAGCTGAGCAGCCATCT +
Preference number: 5 (lower is better)
Translates to: WWLCPAVSRTPRTPS*RLPLSSDHGAEQPS
Trigger: AGATGGCTGCTCAGCTCCATGATCTGAGGAAAGTGGAAGCCGCCAAGAAGGAGTTCGAGGAGTACGTGAGACAGCAGGACATAGCCACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CCA 90 bp TCCTCATCGTGTCAGGCAGGACTCGTAGTGCAGAGAAGATGCGCTTaGTGGCTATGTCCTGCTGTCTCACGTACTCCTCGAACTCCTTCT +
Preference number: 5 (lower is better)
Translates to: SSSCQAGLVVQRRCA*WLCPAVSRTPRTPS
Trigger: AGAAGGAGTTCGAGGAGTACGTGAGACAGCAGGACATAGCCACCAAGCGCATCTTCTCTGCACTACGAGTCCTGCCTGACACGATGAGGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp AGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAACCTGGCACGGACTTTGACCCTTGTCTCCTaGCTCAGTTCTGGGCTCATG +
Preference number: 5 (lower is better)
Translates to: SSFPALSLPTLWQNLARTLTLVS*LSSGLM
Trigger: CATGAGCCCAGAACTGAGCAAGGAGACAAGGGTCAA...AGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp GCCAGTATATACGTGGTCCCCTCTGAGTCCCTGATGTCCGCACCCTTCCTACTGGGTATCCTTCAGCTCTaGGGAGGTATTCAGGATCTG +
Preference number: 5 (lower is better)
Translates to: ASIYVVPSESLMSAPFLLGILQL*GGIQDL
Trigger: CAGATCCTGAATACCTCCCAAGAGCTGAAGGATACC...CAGTAGGAAGGGTGCGGACATCAGGGACTCAGAGGGGACCACGTATATACTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp TCCCACACTTTGGCAGAACCTGGCACGGACTGCTTTAGCACAGAATGCAATCGGAAGTCATCTTCTGTGTaGCCTCTGGGGCTGGCTTGG +
Preference number: 5 (lower is better)
Translates to: SHTLAEPGTDCFSTECNRKSSSV*PLGLAW
Trigger: CCAAGCCAGCCCCAGAGGCAACACAGAAGATGACTT...CCGATTGCATTCTGTGCTAAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp CCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAAAAGTCATCTTCTGTGTaGCCTCTGGGGCTGGCTTGG +
Preference number: 5 (lower is better)
Translates to: PAKPGLLEQFWKQVTTPEKSSSV*PLGLAW
Trigger: CCAAGCCAGCCCCAGAGGCAACACAGAAGATGACTT...TTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp GTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGAACCTGGCACGGACTGCTTTTCCTCGAACTCCTTCTaGGCGGCTTCCACTTTCCTC +
Preference number: 5 (lower is better)
Translates to: VSCTFPSHTLAEPGTDCFSSNSF*AASTFL
Trigger: GAGGAAAGTGGAAGCCGCCAAGAAGGAGTTCGAGGA...AAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp GACACCCAACTGAAGAGCAGGGAGGCCAGCCAAGCCTGGCCTTCTGGAGCAGTTGATCCAGATGCTGGATaGGTACCATCCCATAATGTT +
Preference number: 5 (lower is better)
Translates to: DTQLKSREASQAWPSGAVDPDAG*VPSHNV
Trigger: AACATTATGGGATGGTACCAATCCAGCATCTGGATC...AACTGCTCCAGAAGGCCAGGCTTGGCTGGCCTCCCTGCTCTTCAGTTGGGTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000102661.4
CDS GCA 90 bp GGTAGGAGTTTCATCCTTTCCCCTAGACTGCGGAGGCCCTTCCTTTaGTTACAGATCTTCCGGCATTCAGGACAGCATGGTAGCTCACAG +
Preference number: 5 (lower is better)
Translates to: GRSFILSPRLRRPFL*LQIFRHSGQHGSSQ
Trigger: CTGTGAGCTACCATGCTGTCCTGAATGCCGGAAGATCTGTAAGCAAAGGAAGGGCCTCCGCAGTCTAGGGGAAAGGATGAAACTCCTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp CCTAGCTCCAAAGTCAGTTATGCTGGGACCTATCCCAACTGTAAAACGAATGGGAGGCCCAGCTCCAGCTaGGGGAATGATGCATGGGAC +
Preference number: 5 (lower is better)
Translates to: PSSKVSYAGTYPNCKTNGRPSSS*GNDAWD
Trigger: GTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCT...CCCATTCGTTTTACAGTTGGGATAGGTCCCAGCATAACTGACTTTGGAGCTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp GTGGGAGATCCTAGGTTCCAGAGAGTAGCAATTATCCAGAGCCAGAAACAGGCCGTGAGAGCACAGAGCTaGACCCTTGTCTCCTTGCTC +
Preference number: 5 (lower is better)
Translates to: VGDPRFQRVAIIQSQKQAVRAQS*TLVSLL
Trigger: GAGCAAGGAGACAAGGGTCAAGCTCTGTGCTCTCAC...GGCCTGTTTCTGGCTCTGGATAATTGCTACTCTCTGGAACCTAGGATCTCCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp GCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAATTATAGCTAGCAGCTCCTGGACCTaGGGGTATTTGCCGGACAGC +
Preference number: 5 (lower is better)
Translates to: AWPSGAVLETSHHSRIIASSSWT*GYLPDS
Trigger: GCTGTCCGGCAAATACCCCAAGGTCCAGGAGCTGCT...AGCTATAATTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp GTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGCATTCAACAAGGCCAGTATCTCTCGGTCCCCTCCTaGAACTCTCTCATCTTCCTC +
Preference number: 5 (lower is better)
Translates to: VNPQLSQCLTWGIQQGQYLSVPS*NSLIFL
Trigger: GAGGAAGATGAGAGAGTTCAAGGAGGGGACCGAGAG...ATACTGGCCTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTGGGGGTTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp GCCTCCTCAGGTTTCTGGACCCACCGTAAACCCCCAGCTCAGCCAGTGTTTGACGATCCAGATGCTGGATaGGTACCATCCCATAATGTT +
Preference number: 5 (lower is better)
Translates to: ASSGFWTHRKPPAQPVFDDPDAG*VPSHNV
Trigger: AACATTATGGGATGGTACCAATCCAGCATCTGGATC...GTCAAACACTGGCTGAGCTGGGGGTTTACGGTGGGTCCAGAAACCTGAGGAGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp CCTAGCTCCAAAGTCAGTTATGCTGGGACCTATCCCAACTGTAAAACGAATGGGGCGGAGGCCCTTCCTTaGCTTACAGATCTTCCGGCA +
Preference number: 5 (lower is better)
Translates to: PSSKVSYAGTYPNCKTNGAEALP*LTDLPA
Trigger: TGCCGGAAGATCTGTAAGCAAAGGAAGGGCCTCCGC...CCCATTCGTTTTACAGTTGGGATAGGTCCCAGCATAACTGACTTTGGAGCTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp CCAGCCAAGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAAGGTATCCTTCAGCTCTaGGGAGGTATTCAGGATCTG +
Preference number: 5 (lower is better)
Translates to: PAKPGLLEQFWKQVTTPEGILQL*GGIQDL
Trigger: CAGATCCTGAATACCTCCCAAGAGCTGAAGGATACC...TTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCTTGGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp TCCCACACTTTGGCAGAACCTGGCACGGACTGCTTTAGCACAGAATGCAATCGGATCTCATCAGGAGAGTaGAAACTGGGCCCAGTCTTC +
Preference number: 5 (lower is better)
Translates to: SHTLAEPGTDCFSTECNRISSGE*KLGPVF
Trigger: GAAGACTGGGCCCAGTTTCAACTCTCCTGATGAGAT...CCGATTGCATTCTGTGCTAAAGCAGTCCGTGCCAGGTTCTGCCAAAGTGTGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp AGCCTGGCCTTCTGGAGCAGTTTTGGAAACAAGTCACCACTCCAGAATTATAGCGTGAGAGCACAGAGCTaGACCCTTGTCTCCTTGCTC +
Preference number: 5 (lower is better)
Translates to: SLAFWSSFGNKSPLQNYSVRAQS*TLVSLL
Trigger: GAGCAAGGAGACAAGGGTCAAGCTCTGTGCTCTCAC...GCTATAATTCTGGAGTGGTGACTTGTTTCCAAAACTGCTCCAGAAGGCCAGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp GTAAACCCCCAGCTCAGCCAGTGTTTGACATGGGGCATTCAACAAGGCCAGTATGGTATCCTTCAGCTCTaGGGAGGTATTCAGGATCTG +
Preference number: 5 (lower is better)
Translates to: VNPQLSQCLTWGIQQGQYGILQL*GGIQDL
Trigger: CAGATCCTGAATACCTCCCAAGAGCTGAAGGATACC...ATACTGGCCTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTGGGGGTTTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp ATGTTAAAAGACGGAGCTCGTTTCCTGCACTTTCCCTTCCCACACTTTGGCAGATCCTCGAACTCCTTCTaGGCGGCTTCCACTTTCCTC +
Preference number: 5 (lower is better)
Translates to: MLKDGARFLHFPFPHFGRSSNSF*AASTFL
Trigger: GAGGAAAGTGGAAGCCGCCAAGAAGGAGTTCGAGGA...TCTGCCAAAGTGTGGGAAGGGAAAGTGCAGGAAACGAGCTCCGTCTTTTAACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS TCA 90 bp AGCTTCTGGAGTATGTCACCCACGTGCCCTTGCCCTGACTTATTATaGTGGGAAGAGTCTCGGACTAAGAGATCCAGATGCTGGAAGAGA +
Preference number: 5 (lower is better)
Translates to: SFWSMSPTCPCPDLL*WEESRTKRSRCWKR
Trigger: TCTCTTCCAGCATCTGGATCTCTTAGTCCGAGACTCTTCCCATCATAATAAGTCAGGGCAAGGGCACGTGGGTGACATACTCCAGAAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060255.14
CDS TCA 90 bp AGCTTCTGGAGTATGTCACCCACGTGCCCTTGCCCTGACTTATTATaGTGGGAAGAGTCTCGGACTAAGAGATCCAGATGCTGGATTGGT +
Preference number: 5 (lower is better)
Translates to: SFWSMSPTCPCPDLL*WEESRTKRSRCWIG
Trigger: ACCAATCCAGCATCTGGATCTCTTAGTCCGAGACTCTTCCCATCATAATAAGTCAGGGCAAGGGCACGTGGGTGACATACTCCAGAAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000102661.4
CDS CCA 90 bp TCCAGATGCTGGAAGAGAAAGGGTCCTGACACCGGCAGCCGGGATTaGTGTGTCAGGATTGACGAAACTAGAAATTGTCTTACCTGGATT +
Preference number: 5 (lower is better)
Translates to: SRCWKRKGPDTGSRD*CVRIDETRNCLTWI
Trigger: AATCCAGGTAAGACAATTTCTAGTTTCGTCAATCCTGACACACCAATCCCGGCTGCCGGTGTCAGGACCCTTTCTCTTCCAGCATCTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060255.14
CDS-3UTR CAA 90 bp CAGCTCAGCCAGTGTTTGACATGGGGCATTCAACAAGGCCAGTATATACGTGGTATCTCATCAGGAGAGTaGAAACTGGGCCCAGTCTTC +
Preference number: 5 (lower is better)
Translates to: QLSQCLTWGIQQGQYIRGISSGE*KLGPVF
Trigger: GAAGACTGGGCCCAGTTTCAACTCTCCTGATGAGAT...ACCACGTATATACTGGCCTTGTTGAATGCCCCATGTCAAACACTGGCTGAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 90 bp GGACTAAGAGATCCAGATGCTGGATTGGTACCATCCCATAATGTTTaGCCATCACCTCAGCCACGTGAACGAACATCTCTAGATAGCCCA +
Preference number: 5 (lower is better)
Translates to: GLRDPDAGLVPSHNV*PSPQPRERTSLDSP
Trigger: TGGGCTATCTAGAGATGTTCGTTCACGTGGCTGAGGTGATGGGCAAACATTATGGGATGGTACCAATCCAGCATCTGGATCTCTTAGTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp ATCGGAGGTGTGGTTCTTTGGCATGTAATCTGTGTTGATCCATCCAAATGGGCTTTGACCCTTGTCTCCTaGCTCAGTTCTGGGCTCATG +
Preference number: 5 (lower is better)
Translates to: IGGVVLWHVICVDPSKWALTLVS*LSSGLM
Trigger: CATGAGCCCAGAACTGAGCAAGGAGACAAGGGTCAA...AGCCCATTTGGATGGATCAACACAGATTACATGCCAAAGAACCACACCTCCGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp CTCCTAGCTCCAAAGTCAGTTATGCTGGGACCTATCCCAACTGTAAAACGAATGATCTCATCAGGAGAGTaGAAACTGGGCCCAGTCTTC +
Preference number: 5 (lower is better)
Translates to: LLAPKSVMLGPIPTVKRMISSGE*KLGPVF
Trigger: GAAGACTGGGCCCAGTTTCAACTCTCCTGATGAGAT...CATTCGTTTTACAGTTGGGATAGGTCCCAGCATAACTGACTTTGGAGCTAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS-3UTR CAA 90 bp CCTTATGTGGTGGGAGATCCTAGGTTCCAGAGAGTAGCAATTATCCAGAGCCAGATTGTCTTACCTGGATaGGTACCATCCCATAATGTT +
Preference number: 5 (lower is better)
Translates to: PYVVGDPRFQRVAIIQSQIVLPG*VPSHNV
Trigger: AACATTATGGGATGGTACCAATCCAGGTAAGACAAT...CTGGCTCTGGATAATTGCTACTCTCTGGAACCTAGGATCTCCCACCACATAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060255.14
CDS GCA 90 bp AAACTAGAAATTGTCTTACCTGGATTGGTACCATCCCATAATGTTTaGCCATCACCTCAGCCACGTGAACGAACATCTCTAGATAGCCCA +
Preference number: 5 (lower is better)
Translates to: KLEIVLPGLVPSHNV*PSPQPRERTSLDSP
Trigger: TGGGCTATCTAGAGATGTTCGTTCACGTGGCTGAGGTGATGGGCAAACATTATGGGATGGTACCAATCCAGGTAAGACAATTTCTAGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060255.14
CDS GCA 72 bp CGCCGCTGCTGCCATGCCTGCGCCCACCACACCCCCTaGCAGGCCCATGAGCCCAGCACCTACAGCGCCCCC +
Preference number: 6 (lower is better)
Translates to: RRCCHACAHHTP*QAHEPSTYSAP
Trigger: GGGGGCGCTGTAGGTGCTGGGCTCATGGGCCTGGCAGGGGGTGTGGTGGGCGCAGGCATGGCAGCAGCGGCG
75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 72 bp TGCTACCATCCCAGCCTCAGCAGCCAACGCCGCTGCTaGCATGCCTGCGCCCACCACACCCCCTGCCAGGCC +
Preference number: 6 (lower is better)
Translates to: CYHPSLSSQRRC*HACAHHTPCQA
Trigger: GGCCTGGCAGGGGGTGTGGTGGGCGCAGGCATGGCAGCAGCGGCGTTGGCTGCTGAGGCTGGGATGGTAGCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 72 bp AGCTGCTACCATCCCAGCCTCAGCAGCCAACGCCGCTaGTGCCATGCCTGCGCCCACCACACCCCCTGCCAG +
Preference number: 6 (lower is better)
Translates to: SCYHPSLSSQRR*CHACAHHTPCQ
Trigger: CTGGCAGGGGGTGTGGTGGGCGCAGGCATGGCAGCAGCGGCGTTGGCTGCTGAGGCTGGGATGGTAGCAGCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CAA 90 bp GGCTCCCGGGTTGGGGAGGGACGGTGTCCCAGGCCCAGCTCCAGCTaGGGGAATGATGCATGGGACCTGCTTGTCCTGGTCCCTCCCTGC +
Preference number: 6 (lower is better)
Translates to: GSRVGEGRCPRPSSS*GNDAWDLLVLVPPC
Trigger: GCAGGGAGGGACCAGGACAAGCAGGTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCTGGGACACCGTCCCTCCCCAACCCGGGAGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS CCA 72 bp TTCCAGACAGATGGAGCAGGTGGGCGGCTCCCGGGTTaGGGAGGGACGGTGTCCCAGGCCCAGCTCCAGCTT +
Preference number: 6 (lower is better)
Translates to: FQTDGAGGRLPG*GGTVSQAQLQL
Trigger: AAGCTGGAGCTGGGCCTGGGACACCGTCCCTCCCCAACCCGGGAGCCGCCCACCTGCTCCATCTGTCTGGAA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS TCA 72 bp GGGACGGTGTCCCAGGCCCAGCTCCAGCTTGGGGAATaGTGCATGGGACCTGCTTGTCCTGGTCCCTCCCTG +
Preference number: 6 (lower is better)
Translates to: GTVSQAQLQLGE*CMGPACPGPSL
Trigger: CAGGGAGGGACCAGGACAAGCAGGTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCTGGGACACCGTCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS GCA 72 bp GGCCCAGCTCCAGCTTGGGGAATGATGCATGGGACCTaGTTGTCCTGGTCCCTCCCTGCACAGCCTGGCCCA +
Preference number: 6 (lower is better)
Translates to: GPAPAWGMMHGT*LSWSLPAQPGP
Trigger: TGGGCCAGGCTGTGCAGGGAGGGACCAGGACAAGCAGGTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS CAA 90 bp GTCCCAGGCCCAGCTCCAGCTTGGGGAATGATGCATGGGACCTGCTaGTCCTGGTCCCTCCCTGCACAGCCTGGCCCATCCAGCCTTGTG +
Preference number: 6 (lower is better)
Translates to: VPGPAPAWGMMHGTC*SWSLPAQPGPSSLV
Trigger: CACAAGGCTGGATGGGCCAGGCTGTGCAGGGAGGGACCAGGACAAGCAGGTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCTGGGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS GCA 72 bp GTTAGCGCCCCATCTGATCCCAGGCAGAGACCCCTCTaGTCTGGGCCTGCCGCTGTCACCAGATTCCAGGCT +
Preference number: 6 (lower is better)
Translates to: VSAPSDPRQRPL*SGPAAVTRFQA
Trigger: AGCCTGGAATCTGGTGACAGCGGCAGGCCCAGAGCAGAGGGGTCTCTGCCTGGGATCAGATGGGGCGCTAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CCA 72 bp TGTCCCAGGCCCAGCTCCAGCTTGGGGAATGATGCATaGGACCTGCTTGTCCTGGTCCCTCCCTGCACAGCC +
Preference number: 6 (lower is better)
Translates to: CPRPSSSLGNDA*DLLVLVPPCTA
Trigger: GGCTGTGCAGGGAGGGACCAGGACAAGCAGGTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCTGGGACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS CCA 72 bp TTGGGGAGGGACGGTGTCCCAGGCCCAGCTCCAGCTTaGGGAATGATGCATGGGACCTGCTTGTCCTGGTCC +
Preference number: 6 (lower is better)
Translates to: LGRDGVPGPAPA*GMMHGTCLSWS
Trigger: GGACCAGGACAAGCAGGTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCTGGGACACCGTCCCTCCCCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS CAA 90 bp CAGCGGGCCCGTTTCCCGAGGAGCAGCTCCTGGACCTTGGGGTATTaGCCGGACAGCTTCTGGAGTATGTCACCCACGTGCCCTTGCCCT +
Preference number: 6 (lower is better)
Translates to: QRARFPRSSSWTLGY*PDSFWSMSPTCPCP
Trigger: AGGGCAAGGGCACGTGGGTGACATACTCCAGAAGCTGTCCGGCAAATACCCCAAGGTCCAGGAGCTGCTCCTCGGGAAACGGGCCCGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CAA 90 bp GCCTGCAGCTCGGCTTCCAGGGCCTCCAAGGTCTGCTCTCTCTCCTaGCACAACAGGGCCACACCATGGCGGGCCAAGATGGCATCCTTC +
Preference number: 6 (lower is better)
Translates to: ACSSASRASKVCSLS*HNRATPWRAKMASF
Trigger: GAAGGATGCCATCTTGGCCCGCCATGGTGTGGCCCTGTTGTGCAAGGAGAGAGAGCAGACCTTGGAGGCCCTGGAAGCCGAGCTGCAGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CAA 90 bp CCTGCTTGTCCTGGTCCCTCCCTGCACAGCCTGGCCCATCCAGCCTaGTGCTTCCTCCCTGGGGAGAACCCAACTGTTGCTGCTGTTTCC +
Preference number: 6 (lower is better)
Translates to: PACPGPSLHSLAHPA*CFLPGENPTVAAVS
Trigger: GGAAACAGCAGCAACAGTTGGGTTCTCCCCAGGGAGGAAGCACAAGGCTGGATGGGCCAGGCTGTGCAGGGAGGGACCAGGACAAGCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
CDS GCA 72 bp AACAGCAGACGTTCTGCCCTCACAGCACAGGTCTCCTaGAGTGCAGGGGGCAGTGGCCGCTGTGGTAGGAGT +
Preference number: 6 (lower is better)
Translates to: NSRRSALTAQVS*SAGGSGRCGRS
Trigger: ACTCCTACCACAGCGGCCACTGCCCCCTGCACTGCAGGAGACCTGTGCTGTGAGGGCAGAACGTCTGCTGTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CCA 72 bp TTGGGGAGGGACGGTGTCCCAGGCCCAGCTCCAGCTTaGGGAATGATGCATGGGACCAACTGTTGCTGCTGT +
Preference number: 6 (lower is better)
Translates to: LGRDGVPGPAPA*GMMHGTNCCCC
Trigger: ACAGCAGCAACAGTTGGTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCTGGGACACCGTCCCTCCCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102661.4
CDS CAA 72 bp CAGCGGGCCCGTTTCCCGAGGAGCAGCTCCTGGACCTaGGGGTATTTGCCGGACAGCTTCTGGAGTATGTCA +
Preference number: 6 (lower is better)
Translates to: QRARFPRSSSWT*GYLPDSFWSMS
Trigger: TGACATACTCCAGAAGCTGTCCGGCAAATACCCCAAGGTCCAGGAGCTGCTCCTCGGGAAACGGGCCCGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 72 bp TCCGGAGGCATTGATTCGTACCAACAGCAGACGTTCTaGCCTCACAGCACAGGTCTCCTGCAGTGCAGGGGG +
Preference number: 6 (lower is better)
Translates to: SGGIDSYQQQTF*PHSTGLLQCRG
Trigger: CCCCCTGCACTGCAGGAGACCTGTGCTGTGAGGGCAGAACGTCTGCTGTTGGTACGAATCAATGCCTCCGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 72 bp GTTTCCCGAGGAGCAGCTCCTGGACCTTGGGGTATTTaGCGGACAGCTTCTGGAGTATGTCACCCACGTGCC +
Preference number: 6 (lower is better)
Translates to: VSRGAAPGPWGI*RTASGVCHPRA
Trigger: GGCACGTGGGTGACATACTCCAGAAGCTGTCCGGCAAATACCCCAAGGTCCAGGAGCTGCTCCTCGGGAAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 72 bp ATCCAGCCAGAGAGATTCTTGATCTCCTGTGCTAGCTaGTGCCCTGTGAGCAGGCGTCTGTCTCCCCTGGCC +
Preference number: 6 (lower is better)
Translates to: IQPERFLISCAS*CPVSRRLSPLA
Trigger: GGCCAGGGGAGACAGACGCCTGCTCACAGGGCAGCAGCTAGCACAGGAGATCAAGAATCTCTCTGGCTGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CCA 72 bp CTCCCAGGACAGCCAATAAGCAGACGGGTGTGTCCCTaGCCAGTGGATGCTTCAGGCAACGGTTTATGGCGC +
Preference number: 6 (lower is better)
Translates to: LPGQPISRRVCP*PVDASGNGLWR
Trigger: GCGCCATAAACCGTTGCCTGAAGCATCCACTGGCCAGGGACACACCCGTCTGCTTATTGGCTGTCCTGGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CCA 72 bp GTCTGCTCTCTCTCCTTGCACAACAGGGCCACACCATaGCGGGCCAAGATGGCATCCTTCTGGGTAGAGAGG +
Preference number: 6 (lower is better)
Translates to: VCSLSLHNRATP*RAKMASFWVER
Trigger: CCTCTCTACCCAGAAGGATGCCATCTTGGCCCGCCATGGTGTGGCCCTGTTGTGCAAGGAGAGAGAGCAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CAA 72 bp CGTTTCCCGAGGAGCAGCTCCTGGACCTTGGGGTATTaGCCGGACAGCTTCTGGAGTATGTCACCCACGTGC +
Preference number: 6 (lower is better)
Translates to: RFPRSSSWTLGY*PDSFWSMSPTC
Trigger: GCACGTGGGTGACATACTCCAGAAGCTGTCCGGCAAATACCCCAAGGTCCAGGAGCTGCTCCTCGGGAAACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CAA 72 bp CTGGGCCCAGTCTTCCCCATCCAGCCAGAGAGATTCTaGATCTCCTGTGCTAGCTGCTGCCCTGTGAGCAGG +
Preference number: 6 (lower is better)
Translates to: LGPVFPIQPERF*ISCASCCPVSR
Trigger: CCTGCTCACAGGGCAGCAGCTAGCACAGGAGATCAAGAATCTCTCTGGCTGGATGGGGAAGACTGGGCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CAA 90 bp CAACGGTTTATGGCGCCCATCCTGAGGATGAGGCCTCCGGAGGCATaGATTCGTACCAACAGCAGACGTTCTGCCCTCACAGCACAGGTC +
Preference number: 6 (lower is better)
Translates to: QRFMAPILRMRPPEA*IRTNSRRSALTAQV
Trigger: GACCTGTGCTGTGAGGGCAGAACGTCTGCTGTTGGTACGAATCAATGCCTCCGGAGGCCTCATCCTCAGGATGGGCGCCATAAACCGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CAA 72 bp ATGGCGCCCATCCTGAGGATGAGGCCTCCGGAGGCATaGATTCGTACCAACAGCAGACGTTCTGCCCTCACA +
Preference number: 6 (lower is better)
Translates to: MAPILRMRPPEA*IRTNSRRSALT
Trigger: TGTGAGGGCAGAACGTCTGCTGTTGGTACGAATCAATGCCTCCGGAGGCCTCATCCTCAGGATGGGCGCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CAA 90 bp GAGTTGAAACTGGGCCCAGTCTTCCCCATCCAGCCAGAGAGATTCTaGATCTCCTGTGCTAGCTGCTGCCCTGTGAGCAGGCGTCTGTCT +
Preference number: 6 (lower is better)
Translates to: ELKLGPVFPIQPERF*ISCASCCPVSRRLS
Trigger: AGACAGACGCCTGCTCACAGGGCAGCAGCTAGCACAGGAGATCAAGAATCTCTCTGGCTGGATGGGGAAGACTGGGCCCAGTTTCAACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 72 bp GCCGCTGTGGTAGGAGTTTCATCCTTTCCCCTAGACTaGGGAGGCCCTTCCTTTGCTTACAGATCTTCCGGC +
Preference number: 6 (lower is better)
Translates to: AAVVGVSSFPLD*GGPSFAYRSSG
Trigger: GCCGGAAGATCTGTAAGCAAAGGAAGGGCCTCCGCAGTCTAGGGGAAAGGATGAAACTCCTACCACAGCGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CCA 72 bp ATGCGGTGTGTGCTGAAGCATCGGATGCAGAAGTCATaGCCACAGTCCAGCGAGATGGGCTCTCGAAGCCTT +
Preference number: 6 (lower is better)
Translates to: MRCVLKHRMQKS*PQSSEMGSRSL
Trigger: AAGGCTTCGAGAGCCCATCTCGCTGGACTGTGGCCATGACTTCTGCATCCGATGCTTCAGCACACACCGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CCA 72 bp AGCTCCTGGACCTTGGGGTATTTGCCGGACAGCTTCTaGAGTATGTCACCCACGTGCCCTTGCCCTGACTTA +
Preference number: 6 (lower is better)
Translates to: SSWTLGYLPDSF*SMSPTCPCPDL
Trigger: TAAGTCAGGGCAAGGGCACGTGGGTGACATACTCCAGAAGCTGTCCGGCAAATACCCCAAGGTCCAGGAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CAA 72 bp TCATCTTCTGTGTTGCCTCTGGGGCTGGCTTGGTCTTaGTTTACCCACTGCCTCTCAGGAGCAGGGAGGAGG +
Preference number: 6 (lower is better)
Translates to: SSSVLPLGLAWS*FTHCLSGAGRR
Trigger: CCTCCTCCCTGCTCCTGAGAGGCAGTGGGTAAACAAAGACCAAGCCAGCCCCAGAGGCAACACAGAAGATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS TCA 72 bp ATGAAGCTTCGTTTGCTCTCCCGTTTGCCAAGCCGATaGCAAAAAGCAGTGACTGACAGGACGGGCCTCGGC +
Preference number: 6 (lower is better)
Translates to: MKLRLLSRLPSR*QKAVTDRTGLG
Trigger: GCCGAGGCCCGTCCTGTCAGTCACTGCTTTTTGTCATCGGCTTGGCAAACGGGAGAGCAAACGAAGCTTCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS TCA 72 bp GATCATGGAGCTGAGCAGCCATCTCATCAGGAGAGTTaGAACTGGGCCCAGTCTTCCCCATCCAGCCAGAGA +
Preference number: 6 (lower is better)
Translates to: DHGAEQPSHQES*NWAQSSPSSQR
Trigger: TCTCTGGCTGGATGGGGAAGACTGGGCCCAGTTTCAACTCTCCTGATGAGATGGCTGCTCAGCTCCATGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CAA 90 bp GAAATGGTGGGAGAAGTCATCTTCTGTGTTGCCTCTGGGGCTGGCTaGGTCTTTGTTTACCCACTGCCTCTCAGGAGCAGGGAGGAGGTA +
Preference number: 6 (lower is better)
Translates to: EMVGEVIFCVASGAG*VFVYPLPLRSREEV
Trigger: TACCTCCTCCCTGCTCCTGAGAGGCAGTGGGTAAACAAAGACCAAGCCAGCCCCAGAGGCAACACAGAAGATGACTTCTCCCACCATTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CAA 90 bp TTCCTCATCGTGTCAGGCAGGACTCGTAGTGCAGAGAAGATGCGCTaGGTGGCTATGTCCTGCTGTCTCACGTACTCCTCGAACTCCTTC +
Preference number: 6 (lower is better)
Translates to: FLIVSGRTRSAEKMR*VAMSCCLTYSSNSF
Trigger: GAAGGAGTTCGAGGAGTACGTGAGACAGCAGGACATAGCCACCAAGCGCATCTTCTCTGCACTACGAGTCCTGCCTGACACGATGAGGAA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 72 bp CTGAGCAAGTGGTCCAAAAGGAAGGACTTTCCTGAGTaGTGCTCTCCCAGGACAGCCAATAAGCAGACGGGT +
Preference number: 6 (lower is better)
Translates to: LSKWSKRKDFPE*CSPRTANKQTG
Trigger: ACCCGTCTGCTTATTGGCTGTCCTGGGAGAGCAGCACTCAGGAAAGTCCTTCCTTTTGGACCACTTGCTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 72 bp AGGCCCGGAAATGGTGGGAGAAGTCATCTTCTGTGTTaGCTCTGGGGCTGGCTTGGTCTTTGTTTACCCACT +
Preference number: 6 (lower is better)
Translates to: RPGNGGRSHLLC*LWGWLGLCLPT
Trigger: AGTGGGTAAACAAAGACCAAGCCAGCCCCAGAGGCAACACAGAAGATGACTTCTCCCACCATTTCCGGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 72 bp TCATCGTGTCAGGCAGGACTCGTAGTGCAGAGAAGATaGGCTTGGTGGCTATGTCCTGCTGTCTCACGTACT +
Preference number: 6 (lower is better)
Translates to: SSCQAGLVVQRR*AWWLCPAVSRT
Trigger: AGTACGTGAGACAGCAGGACATAGCCACCAAGCGCATCTTCTCTGCACTACGAGTCCTGCCTGACACGATGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CCA 72 bp TGTCCTGCTGTCTCACGTACTCCTCGAACTCCTTCTTaGCGGCTTCCACTTTCCTCAGATCATGGAGCTGAG +
Preference number: 6 (lower is better)
Translates to: CPAVSRTPRTPS*RLPLSSDHGAE
Trigger: CTCAGCTCCATGATCTGAGGAAAGTGGAAGCCGCCAAGAAGGAGTTCGAGGAGTACGTGAGACAGCAGGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CAA 90 bp GAACTGAGCATCATGGTGAGAGCACAGAGCTTGACCCTTGTCTCCTaGCTCAGTTCTGGGCTCATGACATCCCCCGTGTCCACTAAGAAC +
Preference number: 6 (lower is better)
Translates to: ELSIMVRAQSLTLVS*LSSGLMTSPVSTKN
Trigger: GTTCTTAGTGGACACGGGGGATGTCATGAGCCCAGAACTGAGCAAGGAGACAAGGGTCAAGCTCTGTGCTCTCACCATGATGCTCAGTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS GCA 72 bp TTCATCCTTTCCCCTAGACTGCGGAGGCCCTTCCTTTaGTTACAGATCTTCCGGCATTCAGGACAGCATGGT +
Preference number: 6 (lower is better)
Translates to: FILSPRLRRPFL*LQIFRHSGQHG
Trigger: ACCATGCTGTCCTGAATGCCGGAAGATCTGTAAGCAAAGGAAGGGCCTCCGCAGTCTAGGGGAAAGGATGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054927.14
ENSMUST00000060255.14
ENSMUST00000102661.4
CDS CAA 90 bp AGAGAAAGGGTCCTGACACCGGCAGCCGGGATTGGTGTGTCAGGATaGACGAAACTAGAAATTGTCTTACCTGGATTGGTACCATCCCAT +
Preference number: 6 (lower is better)
Translates to: RERVLTPAAGIGVSG*TKLEIVLPGLVPSH
Trigger: ATGGGATGGTACCAATCCAGGTAAGACAATTTCTAGTTTCGTCAATCCTGACACACCAATCCCGGCTGCCGGTGTCAGGACCCTTTCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060255.14
CDS CCA 72 bp TGGAAGAGAAAGGGTCCTGACACCGGCAGCCGGGATTaGTGTGTCAGGATTGACGAAACTAGAAATTGTCTT +
Preference number: 6 (lower is better)
Translates to: WKRKGPDTGSRD*CVRIDETRNCL
Trigger: AAGACAATTTCTAGTTTCGTCAATCCTGACACACCAATCCCGGCTGCCGGTGTCAGGACCCTTTCTCTTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060255.14
CDS GCA 72 bp GATCCAGATGCTGGATTGGTACCATCCCATAATGTTTaGCCATCACCTCAGCCACGTGAACGAACATCTCTA +
Preference number: 6 (lower is better)
Translates to: DPDAGLVPSHNV*PSPQPRERTSL
Trigger: TAGAGATGTTCGTTCACGTGGCTGAGGTGATGGGCAAACATTATGGGATGGTACCAATCCAGCATCTGGATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054927.14
ENSMUST00000102661.4
CDS GCA 72 bp ATTGTCTTACCTGGATTGGTACCATCCCATAATGTTTaGCCATCACCTCAGCCACGTGAACGAACATCTCTA +
Preference number: 6 (lower is better)
Translates to: IVLPGLVPSHNV*PSPQPRERTSL
Trigger: TAGAGATGTTCGTTCACGTGGCTGAGGTGATGGGCAAACATTATGGGATGGTACCAATCCAGGTAAGACAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060255.14
CDS CAA 90 bp ATTGGTGTGTCAGGATTGACGAAACTAGAAATTGTCTTACCTGGATaGGTACCATCCCATAATGTTTGCCCATCACCTCAGCCACGTGAA +
Preference number: 6 (lower is better)
Translates to: IGVSGLTKLEIVLPG*VPSHNVCPSPQPRE
Trigger: TTCACGTGGCTGAGGTGATGGGCAAACATTATGGGATGGTACCAATCCAGGTAAGACAATTTCTAGTTTCGTCAATCCTGACACACCAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060255.14
CDS CAA 72 bp TCAGGATTGACGAAACTAGAAATTGTCTTACCTGGATaGGTACCATCCCATAATGTTTGCCCATCACCTCAG +
Preference number: 6 (lower is better)
Translates to: SGLTKLEIVLPG*VPSHNVCPSPQ
Trigger: CTGAGGTGATGGGCAAACATTATGGGATGGTACCAATCCAGGTAAGACAATTTCTAGTTTCGTCAATCCTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060255.14