Pregenerated sensors for RNF11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028557Ensembl transcript IDs: ENSMUST00000030284.10, ENSMUST00000064167.8
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTGGCCGCTCTCCCAGAGGACTATATTTCATTCTCAGAACCCACATaGGCACCCACAACTGTCTGTAACTCCAGTTCCAAGGGACCGGAC | + |
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Preference number: 1 (lower is better) Translates to: LAALPEDYISFSEPT*APTTVCNSSSKGPD Trigger: GTCCGGTCCCTTGGAACTGGAGTTACAGACAGTTGTGGGTGCCCATGTGGGTTCTGAGAATGAAATATAGTCCTCTGGGAGAGCGGCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR CCA 90 bp | TTACAAGTTCTGAGGTTTAGTCCATTATCATCATGGTGGCAAGCATaGCAGTGTTCAGGCAGGCATGGCTCTGGAGGAGCTGAGAGCTCT | + |
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Preference number: 1 (lower is better) Translates to: LQVLRFSPLSSWWQA*QCSGRHGSGGAESS Trigger: AGAGCTCTCAGCTCCTCCAGAGCCATGCCTGCCTGAACACTGCCATGCTTGCCACCATGATGATAATGGACTAAACCTCAGAACTTGTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR-3UTR CCA 90 bp | GGCTGGAGAGATGGCGCAGCATTGGCCGCTCTCCCAGAGGACTATATTTCATTCTATGGTTCCAGACAGTaGGGAAAGAGGTCACAGGAA | + |
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Preference number: 2 (lower is better) Translates to: GWRDGAALAALPEDYISFYGSRQ*GKRSQE Trigger: TTCCTGTGACCTCTTTCCCCACTGTCTGGAACCATA...GAATGAAATATAGTCCTCTGGGAGAGCGGCCAATGCTGCGCCATCTCTCCAGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR-3UTR CCA 90 bp | GGCTGGAGAGATGGCGCAGCATTGGCCGCTCTCCCAGAGGACTATATTTCATTCAGACTGGCTCTAACATaGCTAAGAGGAAGGGCTCAA | + |
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Preference number: 2 (lower is better) Translates to: GWRDGAALAALPEDYISFRLALT*LRGRAQ Trigger: TTGAGCCCTTCCTCTTAGCCATGTTAGAGCCAGTCT...GAATGAAATATAGTCCTCTGGGAGAGCGGCCAATGCTGCGCCATCTCTCCAGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR-3UTR TCA 90 bp | CATGGTGGCAAGCATGGCAGTGTTCAGGCAGGCATGGCTCTGGAGGAGCTGAGAAAGGAGAAGTTCCTTTaGGATCACAACTATGAAGTC | + |
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Preference number: 2 (lower is better) Translates to: HGGKHGSVQAGMALEELRKEKFL*DHNYEV Trigger: GACTTCATAGTTGTGATCTCAAAGGAACTTCTCCTT...TCTCAGCTCCTCCAGAGCCATGCCTGCCTGAACACTGCCATGCTTGCCACCATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR-3UTR GCA 90 bp | CATGGTGGCAAGCATGGCAGTGTTCAGGCAGGCATGGCTCTGGAGGAGCTGAGACTAATCCTTCAGAAGTaGAGAGATTTAGAGTATTCT | + |
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Preference number: 2 (lower is better) Translates to: HGGKHGSVQAGMALEELRLILQK*RDLEYS Trigger: AGAATACTCTAAATCTCTGCACTTCTGAAGGATTAG...TCTCAGCTCCTCCAGAGCCATGCCTGCCTGAACACTGCCATGCTTGCCACCATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR-3UTR CCA 90 bp | CATGGTGGCAAGCATGGCAGTGTTCAGGCAGGCATGGCTCTGGAGGAGCTGAGATGCACCATGAAAGACTaGGAAAAGTACATTTACAAA | + |
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Preference number: 2 (lower is better) Translates to: HGGKHGSVQAGMALEELRCTMKD*EKYIYK Trigger: TTTGTAAATGTACTTTTCCCAGTCTTTCATGGTGCA...TCTCAGCTCCTCCAGAGCCATGCCTGCCTGAACACTGCCATGCTTGCCACCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR-3UTR CCA 90 bp | TACCCCAACAAGGCCACACCTCCTAATAGTGCCATTCCCTGGACCAAGCATATTCACAATATCACTGAGTaGAAGGAACGAATCACCTGG | + |
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Preference number: 2 (lower is better) Translates to: YPNKATPPNSAIPWTKHIHNITE*KERITW Trigger: CCAGGTGATTCGTTCCTTCCACTCAGTGATATTGTG...AATATGCTTGGTCCAGGGAATGGCACTATTAGGAGGTGTGGCCTTGTTGGGGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR-3UTR TCA 90 bp | ATAGGCACCAGGAACACAAATGTTGCACAAACATACATGCAGGCAAAATATCCGTGGCTCTGGAGGAGCTaGGAGCTCTATAGCATATTC | + |
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Preference number: 2 (lower is better) Translates to: IGTRNTNVAQTYMQAKYPWLWRS*ELYSIF Trigger: GAATATGCTATAGAGCTCTCAGCTCCTCCAGAGCCA...CGGATATTTTGCCTGCATGTATGTTTGTGCAACATTTGTGTTCCTGGTGCCTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR CAA 90 bp | ACCCAAGAGCACTCAGTTCAGTACTATCTGAGACAGAAGGGGGTTTaGTTATTGTTGTTATTCTTAGACTGCACCATGAAAGACTGGGAA | + |
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Preference number: 2 (lower is better) Translates to: TQEHSVQYYLRQKGV*LLLLFLDCTMKDWE Trigger: TTCCCAGTCTTTCATGGTGCAGTCTAAGAATAACAACAATAACAAAACCCCCTTCTGTCTCAGATAGTACTGAACTGAGTGCTCTTGGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR-3UTR CCA 90 bp | CACCTCCTAATAGTGCCATTCCCTGGACCAAGCATATTCAAACCATCACAAATGCATCATGGGATCTACTaGGAATCTAAGCAATGTATG | + |
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Preference number: 2 (lower is better) Translates to: HLLIVPFPGPSIFKPSQMHHGIY*ESKQCM Trigger: CATACATTGCTTAGATTCCCAGTAGATCCCATGATG...CATTTGTGATGGTTTGAATATGCTTGGTCCAGGGAATGGCACTATTAGGAGGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR CAA 90 bp | GGCTTTCTAGACATTTCAAATCCCATAGCCACGCTGGAACAAGTCTaGTCCATTTCTAAACCCTCTACACCTGCTTTAGGAAACTTTAAA | + |
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Preference number: 2 (lower is better) Translates to: GFLDISNPIATLEQV*SISKPSTPALGNFK Trigger: TTTAAAGTTTCCTAAAGCAGGTGTAGAGGGTTTAGAAATGGACAAGACTTGTTCCAGCGTGGCTATGGGATTTGAAATGTCTAGAAAGCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR-3UTR TCA 90 bp | AGGCTTTCTAGACATTTCAAATCCCATAGCCACGCTGGAACAAGTCTTGTCCATTCTACACCGCAATTATaGAGAACCTTCAAGAAACTT | + |
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Preference number: 2 (lower is better) Translates to: RLSRHFKSHSHAGTSLVHSTPQL*RTFKKL Trigger: AAGTTTCTTGAAGGTTCTTCATAATTGCGGTGTAGA...ATGGACAAGACTTGTTCCAGCGTGGCTATGGGATTTGAAATGTCTAGAAAGCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR-3UTR GCA 90 bp | CACCTCCTAATAGTGCCATTCCCTGGACCAAGCATATTCAAACCATCACAAATGTTGTTATTCTTAGACTaGACCATGAAAGACTGGGAA | + |
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Preference number: 2 (lower is better) Translates to: HLLIVPFPGPSIFKPSQMLLFLD*TMKDWE Trigger: TTCCCAGTCTTTCATGGTGCAGTCTAAGAATAACAA...CATTTGTGATGGTTTGAATATGCTTGGTCCAGGGAATGGCACTATTAGGAGGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR-3UTR CCA 90 bp | CTGAACAGGTACTTTTCTAGGAAACACACCAGATGTGTTTCTGTAACTTCAATATATGGTTCCAGACAGTaGGGAAAGAGGTCACAGGAA | + |
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Preference number: 2 (lower is better) Translates to: LNRYFSRKHTRCVSVTSIYGSRQ*GKRSQE Trigger: TTCCTGTGACCTCTTTCCCCACTGTCTGGAACCATA...TATTGAAGTTACAGAAACACATCTGGTGTGTTTCCTAGAAAAGTACCTGTTCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030284.10 ENSMUST00000064167.8 |
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| 3UTR-3UTR CCA 90 bp | CACCTCCTAATAGTGCCATTCCCTGGACCAAGCATATTCAAACCATCACAAATGAAAGATCAGATATTCTaGAGAACATGTAACCAACTC | + |
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Preference number: 2 (lower is better) Translates to: HLLIVPFPGPSIFKPSQMKDQIF*RTCNQL Trigger: GAGTTGGTTACATGTTCTCCAGAATATCTGATCTTT...CATTTGTGATGGTTTGAATATGCTTGGTCCAGGGAATGGCACTATTAGGAGGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR-3UTR CAA 90 bp | GGCTGGAGAGATGGCGCAGCATTGGCCGCTCTCCCAGAGGACTATATTTCATTCAAGGACACCATTCAATaGGGACTGGCTTACAAGTTC | + |
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Preference number: 3 (lower is better) Translates to: GWRDGAALAALPEDYISFKDTIQ*GLAYKF Trigger: GAACTTGTAAGCCAGTCCCAATTGAATGGTGTCCTT...GAATGAAATATAGTCCTCTGGGAGAGCGGCCAATGCTGCGCCATCTCTCCAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR TCA 72 bp | ATGGCAGTGTTCAGGCAGGCATGGCTCTGGAGGAGCTaGGAGCTCTATAGCATATTCCAAAGGCAAACAGAA | + |
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Preference number: 3 (lower is better) Translates to: MAVFRQAWLWRS*ELYSIFQRQTE Trigger: TTCTGTTTGCCTTTGGAATATGCTATAGAGCTCTCAGCTCCTCCAGAGCCATGCCTGCCTGAACACTGCCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR CCA 72 bp | GGCTTACAAGTTCTGAGGTTTAGTCCATTATCATCATaGTGGCAAGCATGGCAGTGTTCAGGCAGGCATGGC | + |
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Preference number: 3 (lower is better) Translates to: GLQVLRFSPLSS*WQAWQCSGRHG Trigger: GCCATGCCTGCCTGAACACTGCCATGCTTGCCACCATGATGATAATGGACTAAACCTCAGAACTTGTAAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR-3UTR CAA 90 bp | CACCTCCTAATAGTGCCATTCCCTGGACCAAGCATATTCAAACCATCACAAATGAAACTGATGGTTCACTaGAAGTCAGACGAGAGACCC | + |
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Preference number: 3 (lower is better) Translates to: HLLIVPFPGPSIFKPSQMKLMVH*KSDERP Trigger: GGGTCTCTCGTCTGACTTCAAGTGAACCATCAGTTT...CATTTGTGATGGTTTGAATATGCTTGGTCCAGGGAATGGCACTATTAGGAGGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR-3UTR CAA 90 bp | TACCCCAACAAGGCCACACCTCCTAATAGTGCCATTCCCTGGACCAAGCATATTGGGGTTTTGTTATTGTaGTTATTCTTAGACTGCACC | + |
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Preference number: 3 (lower is better) Translates to: YPNKATPPNSAIPWTKHIGVLLL*LFLDCT Trigger: GGTGCAGTCTAAGAATAACAACAATAACAAAACCCC...AATATGCTTGGTCCAGGGAATGGCACTATTAGGAGGTGTGGCCTTGTTGGGGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR-3UTR CAA 90 bp | CACCTCCTAATAGTGCCATTCCCTGGACCAAGCATATTCAAACCATCACAAATGGATATCAAATCCACTTaGCTAGCCTTGTTTCCTGAC | + |
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Preference number: 3 (lower is better) Translates to: HLLIVPFPGPSIFKPSQMDIKST*LALFPD Trigger: GTCAGGAAACAAGGCTAGCAAAGTGGATTTGATATC...CATTTGTGATGGTTTGAATATGCTTGGTCCAGGGAATGGCACTATTAGGAGGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR-3UTR CAA 90 bp | ATAGGCACCAGGAACACAAATGTTGCACAAACATACATGCAGGCAAAATATCCGACGCTGGAACAAGTCTaGTCCATTTCTAAACCCTCT | + |
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Preference number: 3 (lower is better) Translates to: IGTRNTNVAQTYMQAKYPTLEQV*SISKPS Trigger: AGAGGGTTTAGAAATGGACAAGACTTGTTCCAGCGT...CGGATATTTTGCCTGCATGTATGTTTGTGCAACATTTGTGTTCCTGGTGCCTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR CCA 72 bp | CACCCTAAGTTCTATGAAATAATGACACACATGGGGTaGGGTACGTCTTCCAATACCAATTTAAGAGATTCC | + |
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Preference number: 3 (lower is better) Translates to: HPKFYEIMTHMG*GTSSNTNLRDS Trigger: GGAATCTCTTAAATTGGTATTGGAAGACGTACCCCACCCCATGTGTGTCATTATTTCATAGAACTTAGGGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR-3UTR CAA 90 bp | CTGAACAGGTACTTTTCTAGGAAACACACCAGATGTGTTTCTGTAACTTCAATAAAACTGATGGTTCACTaGAAGTCAGACGAGAGACCC | + |
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Preference number: 3 (lower is better) Translates to: LNRYFSRKHTRCVSVTSIKLMVH*KSDERP Trigger: GGGTCTCTCGTCTGACTTCAAGTGAACCATCAGTTT...TATTGAAGTTACAGAAACACATCTGGTGTGTTTCCTAGAAAAGTACCTGTTCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030284.10 ENSMUST00000064167.8 |
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| 3UTR-3UTR CAA 90 bp | CTGAACAGGTACTTTTCTAGGAAACACACCAGATGTGTTTCTGTAACTTCAATAGATATCAAATCCACTTaGCTAGCCTTGTTTCCTGAC | + |
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Preference number: 3 (lower is better) Translates to: LNRYFSRKHTRCVSVTSIDIKST*LALFPD Trigger: GTCAGGAAACAAGGCTAGCAAAGTGGATTTGATATC...TATTGAAGTTACAGAAACACATCTGGTGTGTTTCCTAGAAAAGTACCTGTTCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030284.10 ENSMUST00000064167.8 |
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| CDS-3UTR TCA 90 bp | GGCTGGAGAGATGGCGCAGCATTGGCCGCTCTCCCAGAGGACTATATTTCATTCGGCGGCGGCGGCTCCTaGTCTGGCTCCGTCCCCTCG | + |
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Preference number: 4 (lower is better) Translates to: GWRDGAALAALPEDYISFGGGGS*SGSVPS Trigger: CGAGGGGACGGAGCCAGATCAGGAGCCGCCGCCGCC...GAATGAAATATAGTCCTCTGGGAGAGCGGCCAATGCTGCGCCATCTCTCCAGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| CDS-3UTR TCA 90 bp | CTGAACAGGTACTTTTCTAGGAAACACACCAGATGTGTTTCTGTAACTTCAATAGGCGGCGGCGGCTCCTaGTCTGGCTCCGTCCCCTCG | + |
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Preference number: 4 (lower is better) Translates to: LNRYFSRKHTRCVSVTSIGGGGS*SGSVPS Trigger: CGAGGGGACGGAGCCAGATCAGGAGCCGCCGCCGCC...TATTGAAGTTACAGAAACACATCTGGTGTGTTTCCTAGAAAAGTACCTGTTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030284.10 ENSMUST00000064167.8 |
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| CDS-3UTR CCA 90 bp | AGGCTTTCTAGACATTTCAAATCCCATAGCCACGCTGGAACAAGTCTTGTCCATCGGCGGCTCCTGATCTaGCTCCGTCCCCTCGCCAAA | + |
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Preference number: 4 (lower is better) Translates to: RLSRHFKSHSHAGTSLVHRRLLI*LRPLAK Trigger: TTTGGCGAGGGGACGGAGCCAGATCAGGAGCCGCCG...ATGGACAAGACTTGTTCCAGCGTGGCTATGGGATTTGAAATGTCTAGAAAGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| CDS-3UTR CCA 90 bp | CTGAACAGGTACTTTTCTAGGAAACACACCAGATGTGTTTCTGTAACTTCAATACGGCGGCTCCTGATCTaGCTCCGTCCCCTCGCCAAA | + |
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Preference number: 4 (lower is better) Translates to: LNRYFSRKHTRCVSVTSIRRLLI*LRPLAK Trigger: TTTGGCGAGGGGACGGAGCCAGATCAGGAGCCGCCG...TATTGAAGTTACAGAAACACATCTGGTGTGTTTCCTAGAAAAGTACCTGTTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030284.10 ENSMUST00000064167.8 |
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| CDS-3UTR TCA 90 bp | CTGAACAGGTACTTTTCTAGGAAACACACCAGATGTGTTTCTGTAACTTCAATATCCTCTTCAGTCAGCTaGGTTGCTAGCCGAGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: LNRYFSRKHTRCVSVTSISSSVS*VASRVW Trigger: CCAGACTCGGCTAGCAACTCAGCTGACTGAAGAGGA...TATTGAAGTTACAGAAACACATCTGGTGTGTTTCCTAGAAAAGTACCTGTTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030284.10 ENSMUST00000064167.8 |
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| CDS-3UTR CCA 90 bp | CACCTCCTAATAGTGCCATTCCCTGGACCAAGCATATTCAAACCATCACAAATGGTGTCGGATGATAGATaGGAACAGGAACTTGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: HLLIVPFPGPSIFKPSQMVSDDR*EQELVP Trigger: AGGAACAAGTTCCTGTTCCCATCTATCATCCGACAC...CATTTGTGATGGTTTGAATATGCTTGGTCCAGGGAATGGCACTATTAGGAGGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| 3UTR CAA 72 bp | GACATTTCAAATCCCATAGCCACGCTGGAACAAGTCTaGTCCATTTCTAAACCCTCTACACCTGCTTTAGGA | + |
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Preference number: 4 (lower is better) Translates to: DISNPIATLEQV*SISKPSTPALG Trigger: TCCTAAAGCAGGTGTAGAGGGTTTAGAAATGGACAAGACTTGTTCCAGCGTGGCTATGGGATTTGAAATGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| CDS-3UTR GCA 90 bp | TGTATAAACCTCCCTTTTCCTTGGTTAGGCTTTCTAGACATTTCAAATCCCATAGGTGATAGATGTGCATaGACGGCAGAAATCGAATTG | + |
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Preference number: 4 (lower is better) Translates to: CINLPFPWLGFLDISNPIGDRCA*TAEIEL Trigger: CAATTCGATTTCTGCCGTGCATGCACATCTATCACC...TATGGGATTTGAAATGTCTAGAAAGCCTAACCAAGGAAAAGGGAGGTTTATACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| CDS-3UTR GCA 90 bp | CTGAACAGGTACTTTTCTAGGAAACACACCAGATGTGTTTCTGTAACTTCAATAGGTGATAGATGTGCATaGACGGCAGAAATCGAATTG | + |
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Preference number: 4 (lower is better) Translates to: LNRYFSRKHTRCVSVTSIGDRCA*TAEIEL Trigger: CAATTCGATTTCTGCCGTGCATGCACATCTATCACC...TATTGAAGTTACAGAAACACATCTGGTGTGTTTCCTAGAAAAGTACCTGTTCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030284.10 ENSMUST00000064167.8 |
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| CDS-3UTR CCA 90 bp | CTGAACAGGTACTTTTCTAGGAAACACACCAGATGTGTTTCTGTAACTTCAATAGTGTCGGATGATAGATaGGAACAGGAACTTGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: LNRYFSRKHTRCVSVTSIVSDDR*EQELVP Trigger: AGGAACAAGTTCCTGTTCCCATCTATCATCCGACAC...TATTGAAGTTACAGAAACACATCTGGTGTGTTTCCTAGAAAAGTACCTGTTCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030284.10 ENSMUST00000064167.8 |
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| CDS-3UTR CAA 90 bp | AGGCTTTCTAGACATTTCAAATCCCATAGCCACGCTGGAACAAGTCTTGTCCATGATGGGAACAGGAACTaGTTCCTGATATGGCGGCGG | + |
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Preference number: 5 (lower is better) Translates to: RLSRHFKSHSHAGTSLVHDGNRN*FLIWRR Trigger: CCGCCGCCATATCAGGAACAAGTTCCTGTTCCCATC...ATGGACAAGACTTGTTCCAGCGTGGCTATGGGATTTGAAATGTCTAGAAAGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030284.10 |
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| CDS-3UTR CAA 90 bp | CTGAACAGGTACTTTTCTAGGAAACACACCAGATGTGTTTCTGTAACTTCAATAGATGGGAACAGGAACTaGTTCCTGATATGGCGGCGG | + |
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Preference number: 5 (lower is better) Translates to: LNRYFSRKHTRCVSVTSIDGNRN*FLIWRR Trigger: CCGCCGCCATATCAGGAACAAGTTCCTGTTCCCATC...TATTGAAGTTACAGAAACACATCTGGTGTGTTTCCTAGAAAAGTACCTGTTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030284.10 ENSMUST00000064167.8 |
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