Pregenerated sensors for RND3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017144Ensembl transcript IDs: ENSMUST00000017288.9, ENSMUST00000154545.2
Found 126 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGTAAGTCCGTAGCAACTGCTGAGAGTTCTGGTCTGCTAGGCATGTaGGAAATCCGCTTTGTGGCCCTCTGCGATTTGTTCCGCTTAACG | + |
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Preference number: 1 (lower is better) Translates to: RKSVATAESSGLLGM*EIRFVALCDLFRLT Trigger: CGTTAAGCGGAACAAATCGCAGAGGGCCACAAAGCGGATTTCGCACATGCCTAGCAGACCAGAACTCTCAGCAGTTGCTACGGACTTACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR TCA 90 bp | TGTGCTCTCGGCTACTACTACTCCTTCATTCAAGGTCTCTCCTGGTaGAATCGGCAACCACCTGCCTCTTCTTTAATCACGCTATCACAT | + |
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Preference number: 1 (lower is better) Translates to: CALGYYYSFIQGLSW*NRQPPASSLITLSH Trigger: ATGTGATAGCGTGATTAAAGAAGAGGCAGGTGGTTGCCGATTTCACCAGGAGAGACCTTGAATGAAGGAGTAGTAGTAGCCGAGAGCACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| 3UTR TCA 90 bp | TATGTAAGTGGCTGCTCCGATCTGCTTGGCCATATTTGCCCCCTGTaGAGTAAAAGAAAGAATTTCCGTCAGCAGCGAGACTTTGGAGAG | + |
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Preference number: 1 (lower is better) Translates to: YVSGCSDLLGHICPL*SKRKNFRQQRDFGE Trigger: CTCTCCAAAGTCTCGCTGCTGACGGAAATTCTTTCTTTTACTTCACAGGGGGCAAATATGGCCAAGCAGATCGGAGCAGCCACTTACATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR GCA 90 bp | ATCTCTGTAGTGCTGGTCTATGCATCTTGTAAGGGCTCTGAAGCTTaGTTTCAAACCATCTTGCTCAGCAGCGACCTTCAGGAAGTCAAG | + |
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Preference number: 1 (lower is better) Translates to: ISVVLVYASCKGSEA*FQTILLSSDLQEVK Trigger: CTTGACTTCCTGAAGGTCGCTGCTGAGCAAGATGGTTTGAAAGCAAGCTTCAGAGCCCTTACAAGATGCATAGACCAGCACTACAGAGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| 3UTR TCA 90 bp | GGATGCAAAGAAGAGACAGGTGCAAAGGTAGCAGTTGACCCTCAGTaGTGCTTTAAGCAGGTTGTGAGTAACCTGCTGTGTAGGTATCAT | + |
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Preference number: 1 (lower is better) Translates to: GCKEETGAKVAVDPQ*CFKQVVSNLLCRYH Trigger: ATGATACCTACACAGCAGGTTACTCACAACCTGCTTAAAGCATCACTGAGGGTCAACTGCTACCTTTGCACCTGTCTCTTCTTTGCATCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR GCA 90 bp | TCTATGCATCTTGTAAGGGCTCTGAAGCTTGCTTTCAAACCATCTTaGTCAGCAGCGACCTTCAGGAAGTCAAGATTTCAAAGCCGCATC | + |
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Preference number: 1 (lower is better) Translates to: SMHLVRALKLAFKPS*SAATFRKSRFQSRI Trigger: GATGCGGCTTTGAAATCTTGACTTCCTGAAGGTCGCTGCTGAGCAAGATGGTTTGAAAGCAAGCTTCAGAGCCCTTACAAGATGCATAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| 3UTR TCA 90 bp | TCCAAGGTTAGCACCTATCAATTGTTTGTGCACCCTACCCCTTGCTaGCTTTTGCTACAGAAAGTCAGACAGCTCCTATTCCAGTTGACT | + |
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Preference number: 1 (lower is better) Translates to: SKVSTYQLFVHPTPC*LLLQKVRQLLFQLT Trigger: AGTCAACTGGAATAGGAGCTGTCTGACTTTCTGTAGCAAAAGTCAGCAAGGGGTAGGGTGCACAAACAATTGATAGGTGCTAACCTTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR GCA 90 bp | GGCGGATTTTTCAAGTCACACTTCTTGTCACACAAAACTCTTCAATaGATTCGCTTCTCACCACTCGGTCTACATGCCGAAACTAAGGAC | + |
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Preference number: 1 (lower is better) Translates to: GGFFKSHFLSHKTLQ*IRFSPLGLHAETKD Trigger: GTCCTTAGTTTCGGCATGTAGACCGAGTGGTGAGAAGCGAATGCATTGAAGAGTTTTGTGTGACAAGAAGTGTGACTTGAAAAATCCGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
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| 3UTR GCA 90 bp | AGTTCTGGTCTGCTAGGCATGTGCGAAATCCGCTTTGTGGCCCTCTaGGATTTGTTCCGCTTAACGTTTTTATTTGTCTTATTTACACAC | + |
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Preference number: 1 (lower is better) Translates to: SSGLLGMCEIRFVAL*DLFRLTFLFVLFTH Trigger: GTGTGTAAATAAGACAAATAAAAACGTTAAGCGGAACAAATCGCAGAGGGCCACAAAGCGGATTTCGCACATGCCTAGCAGACCAGAACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR TCA 90 bp | TTGTCTTATTTACACACGCCAAGGTGGCGACGTGAAAAATGTCTCTaGCGCTGTTTTCTGACTGTAAAGCTGAGCATTCTATGTAAGTGG | + |
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Preference number: 1 (lower is better) Translates to: LSYLHTPRWRREKCL*RCFLTVKLSILCKW Trigger: CCACTTACATAGAATGCTCAGCTTTACAGTCAGAAAACAGCGTCAGAGACATTTTTCACGTCGCCACCTTGGCGTGTGTAAATAAGACAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR TCA 90 bp | GAGCGTATTATGTTGGTAAGATGTCTGAGTTTCATGGGAAATGACTaGGATGGCATTTTCTTGCAGAGACAAAACAAAGCGCTTGTGAAG | + |
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Preference number: 1 (lower is better) Translates to: ERIMLVRCLSFMGND*DGIFLQRQNKALVK Trigger: CTTCACAAGCGCTTTGTTTTGTCTCTGCAAGAAAATGCCATCTCAGTCATTTCCCATGAAACTCAGACATCTTACCAACATAATACGCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| 3UTR TCA 90 bp | GTCAGAGCGTATTATGTTGGTAAGATGTCTGAGTTTCATGGGAAATaGCTGAGATGGCATTTTCTTGCAGAGACAAAACAAAGCGCTTGT | + |
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Preference number: 1 (lower is better) Translates to: VRAYYVGKMSEFHGK*LRWHFLAETKQSAC Trigger: ACAAGCGCTTTGTTTTGTCTCTGCAAGAAAATGCCATCTCAGTCATTTCCCATGAAACTCAGACATCTTACCAACATAATACGCTCTGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| 3UTR CCA 90 bp | GTAAAAGAAAGAATTTCCGTCAGCAGCGAGACTTTGGAGAGACACTaGAAAGTGTTGAAATACCACAAAACTGTCTTGAATTGGAACATA | + |
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Preference number: 1 (lower is better) Translates to: VKERISVSSETLERH*KVLKYHKTVLNWNI Trigger: TATGTTCCAATTCAAGACAGTTTTGTGGTATTTCAACACTTTCCAGTGTCTCTCCAAAGTCTCGCTGCTGACGGAAATTCTTTCTTTTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR-3UTR CCA 90 bp | TGTAGAAACCCCTCTAGCTCCCCACAGCTTCTAGTATGGCGATTTGCTCTTGCAGGAGTGATGGCTCCGTaGTTAAGAGAGCCCTGGCTA | + |
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Preference number: 2 (lower is better) Translates to: CRNPSSSPQLLVWRFALAGVMAP*LREPWL Trigger: TAGCCAGGGCTCTCTTAACCACGGAGCCATCACTCC...TGCAAGAGCAAATCGCCATACTAGAAGCTGTGGGGAGCTAGAGGGGTTTCTACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR-3UTR TCA 90 bp | ATCATTTGGGGCCATTGTGAGGCATGGTCTCTTGCTACTGGAGTAAGTCTCCTGTTGTCACACTGGGGATaGTGGGACCCTAAGCCTTTC | + |
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Preference number: 2 (lower is better) Translates to: IIWGHCEAWSLATGVSLLLSHWG*WDPKPF Trigger: GAAAGGCTTAGGGTCCCATCATCCCCAGTGTGACAA...CAGGAGACTTACTCCAGTAGCAAGAGACCATGCCTCACAATGGCCCCAAATGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR-3UTR TCA 90 bp | CAGGATTCCGAAAAGTGGGTATCCTTTCAAGGGCCTCCTAAGCCTGTATCTATGGCTGTGCACTTCATTTaGCTCCATCTTTCCGGTTTG | + |
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Preference number: 2 (lower is better) Translates to: QDSEKWVSFQGPPKPVSMAVHFI*LHLSGL Trigger: CAAACCGGAAAGATGGAGTCAAATGAAGTGCACAGC...CATAGATACAGGCTTAGGAGGCCCTTGAAAGGATACCCACTTTTCGGAATCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
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| 3UTR-3UTR CCA 90 bp | TTGTTCCGCTTAACGTTTTTATTTGTCTTATTTACACACGCCAAGGTGGCGACGCTGCTCCGATCTGCTTaGCCATATTTGCCCCCTGTG | + |
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Preference number: 2 (lower is better) Translates to: LFRLTFLFVLFTHAKVATLLRSA*PYLPPV Trigger: CACAGGGGGCAAATATGGCCAAGCAGATCGGAGCAG...CGTCGCCACCTTGGCGTGTGTAAATAAGACAAATAAAAACGTTAAGCGGAACAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR CAA 90 bp | GTCTATGCATCTTGTAAGGGCTCTGAAGCTTGCTTTCAAACCATCTaGCTCAGCAGCGACCTTCAGGAAGTCAAGATTTCAAAGCCGCAT | + |
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Preference number: 2 (lower is better) Translates to: VYASCKGSEACFQTI*LSSDLQEVKISKPH Trigger: ATGCGGCTTTGAAATCTTGACTTCCTGAAGGTCGCTGCTGAGCAAGATGGTTTGAAAGCAAGCTTCAGAGCCCTTACAAGATGCATAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| 3UTR CAA 90 bp | GGTCTGCTAGGCATGTGCGAAATCCGCTTTGTGGCCCTCTGCGATTaGTTCCGCTTAACGTTTTTATTTGTCTTATTTACACACGCCAAG | + |
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Preference number: 2 (lower is better) Translates to: GLLGMCEIRFVALCD*FRLTFLFVLFTHAK Trigger: CTTGGCGTGTGTAAATAAGACAAATAAAAACGTTAAGCGGAACAAATCGCAGAGGGCCACAAAGCGGATTTCGCACATGCCTAGCAGACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR-3UTR TCA 90 bp | GGACAGGATTCCGAAAAGTGGGTATCCTTTCAAGGGCCTCCTAAGCCTGTATCTGGACAATCACAAGGATaGACAAAACCATCAGACAGA | + |
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Preference number: 2 (lower is better) Translates to: GQDSEKWVSFQGPPKPVSGQSQG*TKPSDR Trigger: TCTGTCTGATGGTTTTGTTCATCCTTGTGATTGTCC...AGATACAGGCTTAGGAGGCCCTTGAAAGGATACCCACTTTTCGGAATCCTGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| 3UTR-3UTR GCA 90 bp | GGACAGGATTCCGAAAAGTGGGTATCCTTTCAAGGGCCTCCTAAGCCTGTATCTCACAAAACTCTTCAATaGATTCGCTTCTCACCACTC | + |
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Preference number: 2 (lower is better) Translates to: GQDSEKWVSFQGPPKPVSHKTLQ*IRFSPL Trigger: GAGTGGTGAGAAGCGAATGCATTGAAGAGTTTTGTG...AGATACAGGCTTAGGAGGCCCTTGAAAGGATACCCACTTTTCGGAATCCTGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
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| 3UTR-3UTR GCA 90 bp | CCCAGACACGAGTGCTTTTGCTCTGTGTATTTGACGTATAATTTTGTTCCAGACACGCTAAGGTCACAGTaGGAGTTCCCCAATGAGGAC | + |
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Preference number: 2 (lower is better) Translates to: PRHECFCSVYLTYNFVPDTLRSQ*EFPNED Trigger: GTCCTCATTGGGGAACTCGCACTGTGACCTTAGCGT...GTCTGGAACAAAATTATACGTCAAATACACAGAGCAAAAGCACTCGTGTCTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| 3UTR-3UTR TCA 90 bp | GTCACACTTCTTGTCACACAAAACTCTTCAATGCATTCGCTTCTCACCACTCGGAAGCCTGTATCTATGTaGCTTTGGCTGTGCACTTCA | + |
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Preference number: 2 (lower is better) Translates to: VTLLVTQNSSMHSLLTTRKPVSM*LWLCTS Trigger: TGAAGTGCACAGCCAAAGTCACATAGATACAGGCTT...CCGAGTGGTGAGAAGCGAATGCATTGAAGAGTTTTGTGTGACAAGAAGTGTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
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| 3UTR-3UTR TCA 90 bp | ACTTCTTGTCACACAAAACTCTTCAATGCATTCGCTTCTCACCACTCGGTCTACAAAACAAAGCGCTTGTaGAGACACAGAGCTGGGTGT | + |
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Preference number: 2 (lower is better) Translates to: TSCHTKLFNAFASHHSVYKTKRL*RHRAGC Trigger: ACACCCAGCTCTGTGTCTTCACAAGCGCTTTGTTTT...GTAGACCGAGTGGTGAGAAGCGAATGCATTGAAGAGTTTTGTGTGACAAGAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| 3UTR-3UTR TCA 90 bp | CCGCTTTGTGGCCCTCTGCGATTTGTTCCGCTTAACGTTTTTATTTGTCTTATTGCAGTTGACCCTCAGTaGTGCTTTAAGCAGGTTGTG | + |
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Preference number: 2 (lower is better) Translates to: PLCGPLRFVPLNVFICLIAVDPQ*CFKQVV Trigger: CACAACCTGCTTAAAGCATCACTGAGGGTCAACTGC...AATAAGACAAATAAAAACGTTAAGCGGAACAAATCGCAGAGGGCCACAAAGCGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR-3UTR GCA 90 bp | ACTTCTTGTCACACAAAACTCTTCAATGCATTCGCTTCTCACCACTCGGTCTACCTCTCACTAGGAGGATaGAAAGAAGAGACAGGTGCA | + |
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Preference number: 2 (lower is better) Translates to: TSCHTKLFNAFASHHSVYLSLGG*KEETGA Trigger: TGCACCTGTCTCTTCTTTGCATCCTCCTAGTGAGAG...GTAGACCGAGTGGTGAGAAGCGAATGCATTGAAGAGTTTTGTGTGACAAGAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR-3UTR CCA 90 bp | CGAAATCCGCTTTGTGGCCCTCTGCGATTTGTTCCGCTTAACGTTTTTATTTGTTTACACACGCCAAGGTaGCGACGTGAAAAATGTCTC | + |
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Preference number: 2 (lower is better) Translates to: RNPLCGPLRFVPLNVFICLHTPR*RREKCL Trigger: GAGACATTTTTCACGTCGCCACCTTGGCGTGTGTAA...ACAAATAAAAACGTTAAGCGGAACAAATCGCAGAGGGCCACAAAGCGGATTTCG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR-3UTR CCA 90 bp | GCTATCACATCTGACGATCACATCTTTTATTTGACTTCTCGTTTTCATCAACGACGTGGATGTTCTTCTTaGAGGTACTGGCGTCCCCCA | + |
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Preference number: 2 (lower is better) Translates to: AITSDDHIFYLTSRFHQRRGCSS*RYWRPP Trigger: TGGGGGACGCCAGTACCTCCAAGAAGAACATCCACG...TCGTTGATGAAAACGAGAAGTCAAATAAAAGATGTGATCGTCAGATGTGATAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| 3UTR-3UTR CCA 90 bp | TTGTTCCGCTTAACGTTTTTATTTGTCTTATTTACACACGCCAAGGTGGCGACGAGCATTCTATGTAAGTaGCTGCTCCGATCTGCTTGG | + |
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Preference number: 2 (lower is better) Translates to: LFRLTFLFVLFTHAKVATSILCK*LLRSAW Trigger: CCAAGCAGATCGGAGCAGCCACTTACATAGAATGCT...CGTCGCCACCTTGGCGTGTGTAAATAAGACAAATAAAAACGTTAAGCGGAACAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR-3UTR TCA 90 bp | GCGGATTTTTCAAGTCACACTTCTTGTCACACAAAACTCTTCAATGCATTCGCTGCTGTGCACTTCATTTaGCTCCATCTTTCCGGTTTG | + |
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Preference number: 2 (lower is better) Translates to: ADFSSHTSCHTKLFNAFAAVHFI*LHLSGL Trigger: CAAACCGGAAAGATGGAGTCAAATGAAGTGCACAGC...AGCGAATGCATTGAAGAGTTTTGTGTGACAAGAAGTGTGACTTGAAAAATCCGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
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| 3UTR-3UTR TCA 90 bp | AGCGCTCGCCTGTTCATAGCTCCCTTTGTTTTTGGCGGATTTTTCAAGTCACACATTTTTATTGAAAGGTaGCTTTTCAGGGCTTGGAGT | + |
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Preference number: 2 (lower is better) Translates to: SARLFIAPFVFGGFFKSHIFIER*LFRAWS Trigger: ACTCCAAGCCCTGAAAAGTCACCTTTCAATAAAAAT...GTGTGACTTGAAAAATCCGCCAAAAACAAAGGGAGCTATGAACAGGCGAGCGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR-3UTR TCA 90 bp | CCGCTTAACGTTTTTATTTGTCTTATTTACACACGCCAAGGTGGCGACGTGAAACCAGTCCGAAGGCCCTaGATTATATTACTCTGTAGA | + |
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Preference number: 2 (lower is better) Translates to: PLNVFICLIYTRQGGDVKPVRRP*IILLCR Trigger: TCTACAGAGTAATATAATTCAGGGCCTTCGGACTGG...TTTCACGTCGCCACCTTGGCGTGTGTAAATAAGACAAATAAAAACGTTAAGCGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR-3UTR CCA 90 bp | GCGGATTTTTCAAGTCACACTTCTTGTCACACAAAACTCTTCAATGCATTCGCTGCACCATTCAGAGCGTaGATGTTCTTCTTGGAGGTA | + |
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Preference number: 2 (lower is better) Translates to: ADFSSHTSCHTKLFNAFAAPFRA*MFFLEV Trigger: TACCTCCAAGAAGAACATCCACGCTCTGAATGGTGC...AGCGAATGCATTGAAGAGTTTTGTGTGACAAGAAGTGTGACTTGAAAAATCCGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
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| 3UTR-3UTR TCA 90 bp | CAAAGCATAATGCTGTACCAGTCAGAGCGTATTATGTTGGTAAGATGTCTGAGTAAGCCTGTATCTATGTaGCTTTGGCTGTGCACTTCA | + |
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Preference number: 2 (lower is better) Translates to: QSIMLYQSERIMLVRCLSKPVSM*LWLCTS Trigger: TGAAGTGCACAGCCAAAGTCACATAGATACAGGCTT...ACTCAGACATCTTACCAACATAATACGCTCTGACTGGTACAGCATTATGCTTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| 3UTR-3UTR GCA 90 bp | CACAAAACTCTTCAATGCATTCGCTTCTCACCACTCGGTCTACATGCCGAAACTTCCATCTTTCCGGTTTaGTCCTGCTTTTTACATTTT | + |
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Preference number: 2 (lower is better) Translates to: HKTLQCIRFSPLGLHAETSIFPV*SCFLHF Trigger: AAAATGTAAAAAGCAGGAGCAAACCGGAAAGATGGA...AGTTTCGGCATGTAGACCGAGTGGTGAGAAGCGAATGCATTGAAGAGTTTTGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
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| 3UTR-3UTR GCA 90 bp | CAAAGCATAATGCTGTACCAGTCAGAGCGTATTATGTTGGTAAGATGTCTGAGTATCCCCAGACACGAGTaGTTTTGCTCTGTGTATTTG | + |
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Preference number: 2 (lower is better) Translates to: QSIMLYQSERIMLVRCLSIPRHE*FCSVYL Trigger: CAAATACACAGAGCAAAAGCACTCGTGTCTGGGGAT...ACTCAGACATCTTACCAACATAATACGCTCTGACTGGTACAGCATTATGCTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| 3UTR-3UTR CCA 90 bp | ACTTCTTGTCACACAAAACTCTTCAATGCATTCGCTTCTCACCACTCGGTCTACAGCTCCCTTTGTTTTTaGCGGATTTTTCAAGTCACA | + |
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Preference number: 2 (lower is better) Translates to: TSCHTKLFNAFASHHSVYSSLCF*RIFQVT Trigger: TGTGACTTGAAAAATCCGCCAAAAACAAAGGGAGCT...GTAGACCGAGTGGTGAGAAGCGAATGCATTGAAGAGTTTTGTGTGACAAGAAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
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| 3UTR-3UTR CCA 90 bp | ACTTCTTGTCACACAAAACTCTTCAATGCATTCGCTTCTCACCACTCGGTCTACACTTTGGAGAGACACTaGAAAGTGTTGAAATACCAC | + |
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Preference number: 2 (lower is better) Translates to: TSCHTKLFNAFASHHSVYTLERH*KVLKYH Trigger: GTGGTATTTCAACACTTTCCAGTGTCTCTCCAAAGT...GTAGACCGAGTGGTGAGAAGCGAATGCATTGAAGAGTTTTGTGTGACAAGAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR-3UTR CCA 90 bp | CTAAAGCATGAGCAAATGGGGGTTTTGCCAGAACAGCATTTCTTTGAAGGAAGTAGCTCCCTTTGTTTTTaGCGGATTTTTCAAGTCACA | + |
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Preference number: 2 (lower is better) Translates to: LKHEQMGVLPEQHFFEGSSSLCF*RIFQVT Trigger: TGTGACTTGAAAAATCCGCCAAAAACAAAGGGAGCT...ACTTCCTTCAAAGAAATGCTGTTCTGGCAAAACCCCCATTTGCTCATGCTTTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| 3UTR-3UTR GCA 90 bp | CCCAGACACGAGTGCTTTTGCTCTGTGTATTTGACGTATAATTTTGTTCCAGACTCCATCTTTCCGGTTTaGTCCTGCTTTTTACATTTT | + |
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Preference number: 2 (lower is better) Translates to: PRHECFCSVYLTYNFVPDSIFPV*SCFLHF Trigger: AAAATGTAAAAAGCAGGAGCAAACCGGAAAGATGGA...GTCTGGAACAAAATTATACGTCAAATACACAGAGCAAAAGCACTCGTGTCTGGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| 3UTR-3UTR CCA 90 bp | CAATATTTAAATACAGAAAGCACTTGCCAGCGATTTTGTAATACTGCCCAAAGCTCAACATTTTCAACCTaGCCCTGGCCATGTATGGTT | + |
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Preference number: 2 (lower is better) Translates to: QYLNTESTCQRFCNTAQSSTFST*PWPCMV Trigger: AACCATACATGGCCAGGGCCAGGTTGAAAATGTTGA...GCTTTGGGCAGTATTACAAAATCGCTGGCAAGTGCTTTCTGTATTTAAATATTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| 3UTR-3UTR GCA 90 bp | GTGGCCCTCTGCGATTTGTTCCGCTTAACGTTTTTATTTGTCTTATTTACACACCTCTTGAAAAAGCGCTaGGTCTCATTTATCACAAAT | + |
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Preference number: 2 (lower is better) Translates to: VALCDLFRLTFLFVLFTHLLKKR*VSFITN Trigger: ATTTGTGATAAATGAGACGCAGCGCTTTTTCAAGAG...GTGTGTAAATAAGACAAATAAAAACGTTAAGCGGAACAAATCGCAGAGGGCCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR-3UTR GCA 90 bp | TACCACTTGTTAAGGACAATCACAAGGATGAACAAAACCATCAGACAGAATAAACACAAAACTCTTCAATaGATTCGCTTCTCACCACTC | + |
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Preference number: 2 (lower is better) Translates to: YHLLRTITRMNKTIRQNKHKTLQ*IRFSPL Trigger: GAGTGGTGAGAAGCGAATGCATTGAAGAGTTTTGTG...TTTATTCTGTCTGATGGTTTTGTTCATCCTTGTGATTGTCCTTAACAAGTGGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| 3UTR GCA 72 bp | AGAGCTGGGTGTTGTAGTTACCTTCACCTCCCCTTCTaGCGCGGTTTAAGGGAGACACCGCTCCAGCGCTTC | + |
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Preference number: 3 (lower is better) Translates to: RAGCCSYLHLPF*RGLRETPLQRF Trigger: GAAGCGCTGGAGCGGTGTCTCCCTTAAACCGCGGCAGAAGGGGAGGTGAAGGTAACTACAACACCCAGCTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| 3UTR GCA 72 bp | GTAGCAACTGCTGAGAGTTCTGGTCTGCTAGGCATGTaGGAAATCCGCTTTGTGGCCCTCTGCGATTTGTTC | + |
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Preference number: 3 (lower is better) Translates to: VATAESSGLLGM*EIRFVALCDLF Trigger: GAACAAATCGCAGAGGGCCACAAAGCGGATTTCGCACATGCCTAGCAGACCAGAACTCTCAGCAGTTGCTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR TCA 72 bp | GGCTACTACTACTCCTTCATTCAAGGTCTCTCCTGGTaGAATCGGCAACCACCTGCCTCTTCTTTAATCACG | + |
|
Preference number: 3 (lower is better) Translates to: GYYYSFIQGLSW*NRQPPASSLIT Trigger: CGTGATTAAAGAAGAGGCAGGTGGTTGCCGATTTCACCAGGAGAGACCTTGAATGAAGGAGTAGTAGTAGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| 3UTR TCA 72 bp | AGTAACCTGCTGTGTAGGTATCATTTGGGGCCATTGTaGGGCATGGTCTCTTGCTACTGGAGTAAGTCTCCT | + |
|
Preference number: 3 (lower is better) Translates to: SNLLCRYHLGPL*GMVSCYWSKSP Trigger: AGGAGACTTACTCCAGTAGCAAGAGACCATGCCTCACAATGGCCCCAAATGATACCTACACAGCAGGTTACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| 3UTR TCA 72 bp | GAAGAGACAGGTGCAAAGGTAGCAGTTGACCCTCAGTaGTGCTTTAAGCAGGTTGTGAGTAACCTGCTGTGT | + |
|
Preference number: 3 (lower is better) Translates to: EETGAKVAVDPQ*CFKQVVSNLLC Trigger: ACACAGCAGGTTACTCACAACCTGCTTAAAGCATCACTGAGGGTCAACTGCTACCTTTGCACCTGTCTCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| 3UTR CCA 72 bp | TGTAGAAACCCCTCTAGCTCCCCACAGCTTCTAGTATaGCGATTTGCTCTTGCAAGAGAATCCAAGCATCCA | + |
|
Preference number: 3 (lower is better) Translates to: CRNPSSSPQLLV*RFALARESKHP Trigger: TGGATGCTTGGATTCTCTTGCAAGAGCAAATCGCCATACTAGAAGCTGTGGGGAGCTAGAGGGGTTTCTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| 3UTR-3UTR CAA 90 bp | CACAAAACTCTTCAATGCATTCGCTTCTCACCACTCGGTCTACATGCCGAAACTGGCTGTGCACTTCATTaGACTCCATCTTTCCGGTTT | + |
|
Preference number: 3 (lower is better) Translates to: HKTLQCIRFSPLGLHAETGCALH*TPSFRF Trigger: AAACCGGAAAGATGGAGTCAAATGAAGTGCACAGCC...AGTTTCGGCATGTAGACCGAGTGGTGAGAAGCGAATGCATTGAAGAGTTTTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
||
| 3UTR GCA 72 bp | CATTCAAGGTCTCTCCTGGTGAAATCGGCAACCACCTaGCTCTTCTTTAATCACGCTATCACATCTGACGAT | + |
|
Preference number: 3 (lower is better) Translates to: HSRSLLVKSATT*LFFNHAITSDD Trigger: ATCGTCAGATGTGATAGCGTGATTAAAGAAGAGGCAGGTGGTTGCCGATTTCACCAGGAGAGACCTTGAATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| 3UTR-3UTR CAA 90 bp | TTCCAGTTGACTCCTGCTTCATCTCTTGAAAAAGCGCTGCGTCTCATTTATCACGGCTGTGCACTTCATTaGACTCCATCTTTCCGGTTT | + |
|
Preference number: 3 (lower is better) Translates to: FQLTPASSLEKALRLIYHGCALH*TPSFRF Trigger: AAACCGGAAAGATGGAGTCAAATGAAGTGCACAGCC...GTGATAAATGAGACGCAGCGCTTTTTCAAGAGATGAAGCAGGAGTCAACTGGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| 3UTR-3UTR CAA 90 bp | TTGTTCCGCTTAACGTTTTTATTTGTCTTATTTACACACGCCAAGGTGGCGACGTGTGCACCCTACCCCTaGCTGACTTTTGCTACAGAA | + |
|
Preference number: 3 (lower is better) Translates to: LFRLTFLFVLFTHAKVATCAPYP*LTFATE Trigger: TTCTGTAGCAAAAGTCAGCAAGGGGTAGGGTGCACA...CGTCGCCACCTTGGCGTGTGTAAATAAGACAAATAAAAACGTTAAGCGGAACAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| 3UTR-3UTR CAA 90 bp | GGACAGGATTCCGAAAAGTGGGTATCCTTTCAAGGGCCTCCTAAGCCTGTATCTAGACACTGGAAAGTGTaGAAATACCACAAAACTGTC | + |
|
Preference number: 3 (lower is better) Translates to: GQDSEKWVSFQGPPKPVSRHWKV*KYHKTV Trigger: GACAGTTTTGTGGTATTTCAACACTTTCCAGTGTCT...AGATACAGGCTTAGGAGGCCCTTGAAAGGATACCCACTTTTCGGAATCCTGTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| 3UTR-3UTR CAA 90 bp | ACTTCTTGTCACACAAAACTCTTCAATGCATTCGCTTCTCACCACTCGGTCTACGTGGCCCTCTGCGATTaGTTCCGCTTAACGTTTTTA | + |
|
Preference number: 3 (lower is better) Translates to: TSCHTKLFNAFASHHSVYVALCD*FRLTFL Trigger: TAAAAACGTTAAGCGGAACAAATCGCAGAGGGCCAC...GTAGACCGAGTGGTGAGAAGCGAATGCATTGAAGAGTTTTGTGTGACAAGAAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| 3UTR TCA 72 bp | TTACACACGCCAAGGTGGCGACGTGAAAAATGTCTCTaGCGCTGTTTTCTGACTGTAAAGCTGAGCATTCTA | + |
|
Preference number: 3 (lower is better) Translates to: LHTPRWRREKCL*RCFLTVKLSIL Trigger: TAGAATGCTCAGCTTTACAGTCAGAAAACAGCGTCAGAGACATTTTTCACGTCGCCACCTTGGCGTGTGTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| 3UTR GCA 72 bp | CTTGTAAGGGCTCTGAAGCTTGCTTTCAAACCATCTTaGTCAGCAGCGACCTTCAGGAAGTCAAGATTTCAA | + |
|
Preference number: 3 (lower is better) Translates to: LVRALKLAFKPS*SAATFRKSRFQ Trigger: TTGAAATCTTGACTTCCTGAAGGTCGCTGCTGAGCAAGATGGTTTGAAAGCAAGCTTCAGAGCCCTTACAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| 3UTR GCA 72 bp | CTGCTAGGCATGTGCGAAATCCGCTTTGTGGCCCTCTaGGATTTGTTCCGCTTAACGTTTTTATTTGTCTTA | + |
|
Preference number: 3 (lower is better) Translates to: LLGMCEIRFVAL*DLFRLTFLFVL Trigger: TAAGACAAATAAAAACGTTAAGCGGAACAAATCGCAGAGGGCCACAAAGCGGATTTCGCACATGCCTAGCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| 3UTR TCA 72 bp | ATGGCATTTTCTTGCAGAGACAAAACAAAGCGCTTGTaGAGACACAGAGCTGGGTGTTGTAGTTACCTTCAC | + |
|
Preference number: 3 (lower is better) Translates to: MAFSCRDKTKRL*RHRAGCCSYLH Trigger: GTGAAGGTAACTACAACACCCAGCTCTGTGTCTTCACAAGCGCTTTGTTTTGTCTCTGCAAGAAAATGCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| 3UTR GCA 72 bp | TATAATTTTGTTCCAGACAGCCCCATTCACCAACTGTaGTCTCGGCTACTACTACTCCTTCATTCAAGGTCT | + |
|
Preference number: 3 (lower is better) Translates to: YNFVPDSPIHQL*SRLLLLLHSRS Trigger: AGACCTTGAATGAAGGAGTAGTAGTAGCCGAGAGCACAGTTGGTGAATGGGGCTGTCTGGAACAAAATTATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| 3UTR-3UTR CAA 90 bp | GCTCAGCAGCGACCTTCAGGAAGTCAAGATTTCAAAGCCGCATCAAGTTTTCCTTTCAAGTCACACTTCTaGTCACACAAAACTCTTCAA | + |
|
Preference number: 3 (lower is better) Translates to: AQQRPSGSQDFKAASSFPFKSHF*SHKTLQ Trigger: TTGAAGAGTTTTGTGTGACAAGAAGTGTGACTTGAA...AGGAAAACTTGATGCGGCTTTGAAATCTTGACTTCCTGAAGGTCGCTGCTGAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| 3UTR-3UTR CAA 90 bp | GGTTTACTAAAGCATGAGCAAATGGGGGTTTTGCCAGAACAGCATTTCTTTGAACAGACACGAGTGCTTTaGCTCTGTGTATTTGACGTA | + |
|
Preference number: 3 (lower is better) Translates to: GLLKHEQMGVLPEQHFFEQTRVL*LCVFDV Trigger: TACGTCAAATACACAGAGCAAAAGCACTCGTGTCTG...TTCAAAGAAATGCTGTTCTGGCAAAACCCCCATTTGCTCATGCTTTAGTAAACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| 3UTR-3UTR CAA 90 bp | CGAAATCCGCTTTGTGGCCCTCTGCGATTTGTTCCGCTTAACGTTTTTATTTGTTTCAAGTCACACTTCTaGTCACACAAAACTCTTCAA | + |
|
Preference number: 3 (lower is better) Translates to: RNPLCGPLRFVPLNVFICFKSHF*SHKTLQ Trigger: TTGAAGAGTTTTGTGTGACAAGAAGTGTGACTTGAA...ACAAATAAAAACGTTAAGCGGAACAAATCGCAGAGGGCCACAAAGCGGATTTCG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| 3UTR TCA 72 bp | TTATTTGTCTTATTTACACACGCCAAGGTGGCGACGTaGAAAATGTCTCTGACGCTGTTTTCTGACTGTAAA | + |
|
Preference number: 3 (lower is better) Translates to: LFVLFTHAKVAT*KMSLTLFSDCK Trigger: TTTACAGTCAGAAAACAGCGTCAGAGACATTTTTCACGTCGCCACCTTGGCGTGTGTAAATAAGACAAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| 3UTR TCA 72 bp | ATCAATGTCCCCAGCCCTACAATAGAATACTTTAAATaGTGCATGCCACATATACCTATTTTAACAGGAACC | + |
|
Preference number: 3 (lower is better) Translates to: INVPSPTIEYFK*CMPHIPILTGT Trigger: GGTTCCTGTTAAAATAGGTATATGTGGCATGCATCATTTAAAGTATTCTATTGTAGGGCTGGGGACATTGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| CDS-3UTR TCA 90 bp | CTTCACCTCCCCTTCTGCCGCGGTTTAAGGGAGACACCGCTCCAGCGCTTCAAAGTCCGTAGCAACTGCTaGGAGTTCTGGTCTGCTAGG | + |
|
Preference number: 4 (lower is better) Translates to: LHLPFCRGLRETPLQRFKVRSNC*EFWSAR Trigger: CCTAGCAGACCAGAACTCTCAGCAGTTGCTACGGAC...TTTGAAGCGCTGGAGCGGTGTCTCCCTTAAACCGCGGCAGAAGGGGAGGTGAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| CDS-3UTR CCA 90 bp | GGCATTTTCTTGCAGAGACAAAACAAAGCGCTTGTGAAGACACAGAGCTGGGTGCTGGGAAGCAGTCCTTaGCGAAGACGTGGAGCAGCG | + |
|
Preference number: 4 (lower is better) Translates to: GIFLQRQNKALVKTQSWVLGSSP*RRRGAA Trigger: CGCTGCTCCACGTCTTCGCCAAGGACTGCTTCCCAG...CACCCAGCTCTGTGTCTTCACAAGCGCTTTGTTTTGTCTCTGCAAGAAAATGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| CDS-3UTR GCA 90 bp | TTCCAGACAGCCCCATTCACCAACTGTGCTCTCGGCTACTACTACTCCTTCATTGGTCTGCTAGGCATGTaGGAAATCCGCTTTGTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: FQTAPFTNCALGYYYSFIGLLGM*EIRFVA Trigger: GGCCACAAAGCGGATTTCGCACATGCCTAGCAGACC...AATGAAGGAGTAGTAGTAGCCGAGAGCACAGTTGGTGAATGGGGCTGTCTGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| CDS-3UTR TCA 90 bp | GGCATTTTCTTGCAGAGACAAAACAAAGCGCTTGTGAAGACACAGAGCTGGGTGGCCAAGGTGGCGACGTaGAAAATGTCTCTGACGCTG | + |
|
Preference number: 4 (lower is better) Translates to: GIFLQRQNKALVKTQSWVAKVAT*KMSLTL Trigger: CAGCGTCAGAGACATTTTTCACGTCGCCACCTTGGC...CACCCAGCTCTGTGTCTTCACAAGCGCTTTGTTTTGTCTCTGCAAGAAAATGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| 3UTR CAA 72 bp | ACGGCGAAGCCTCACATCACAGTACAGCTCTTCGCTTaGTCCTTTCGTAAGTCCGTAGCAACTGCTGAGAGT | + |
|
Preference number: 4 (lower is better) Translates to: TAKPHITVQLFA*SFRKSVATAES Trigger: ACTCTCAGCAGTTGCTACGGACTTACGAAAGGACAAAGCGAAGAGCTGTACTGTGATGTGAGGCTTCGCCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| CDS-3UTR TCA 90 bp | TGTAGAAACCCCTCTAGCTCCCCACAGCTTCTAGTATGGCGATTTGCTCTTGCAGTTCCACTAATGTGCTaGCATCTGTCCGCAGATCAG | + |
|
Preference number: 4 (lower is better) Translates to: CRNPSSSPQLLVWRFALAVPLMC*HLSADQ Trigger: CTGATCTGCGGACAGATGTCAGCACATTAGTGGAAC...TGCAAGAGCAAATCGCCATACTAGAAGCTGTGGGGAGCTAGAGGGGTTTCTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| CDS-3UTR TCA 90 bp | GGACAGGATTCCGAAAAGTGGGTATCCTTTCAAGGGCCTCCTAAGCCTGTATCTGAGACTTTCCCACAGTaGCAACACACTTACCTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: GQDSEKWVSFQGPPKPVSETFPQ*QHTYLV Trigger: GACCAGGTAAGTGTGTTGTCACTGTGGGAAAGTCTC...AGATACAGGCTTAGGAGGCCCTTGAAAGGATACCCACTTTTCGGAATCCTGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| CDS-3UTR CCA 90 bp | CACTTCTTGTCACACAAAACTCTTCAATGCATTCGCTTCTCACCACTCGGTCTATCCTTGGCGAAGACGTaGAGCAGCGCGGTTTTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: HFLSHKTLQCIRFSPLGLSLAKT*SSAVFP Trigger: TGGGAAAACCGCGCTGCTCCACGTCTTCGCCAAGGA...TAGACCGAGTGGTGAGAAGCGAATGCATTGAAGAGTTTTGTGTGACAAGAAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
||
| CDS-3UTR CCA 90 bp | TTCCAGACAGCCCCATTCACCAACTGTGCTCTCGGCTACTACTACTCCTTCATTCACTGCATCAGAATCTaGGTAAGAGAGTGGACGGAC | + |
|
Preference number: 4 (lower is better) Translates to: FQTAPFTNCALGYYYSFIHCIRI*VREWTD Trigger: GTCCGTCCACTCTCTTACCCAGATTCTGATGCAGTG...AATGAAGGAGTAGTAGTAGCCGAGAGCACAGTTGGTGAATGGGGCTGTCTGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| CDS-3UTR TCA 90 bp | GCGGATTTTTCAAGTCACACTTCTTGTCACACAAAACTCTTCAATGCATTCGCTTGCCCCCTGGTCATATaGCACAGGAGTCTGCCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: ADFSSHTSCHTKLFNAFACPLVI*HRSLPV Trigger: CACAGGCAGACTCCTGTGTCATATGACCAGGGGGCA...AGCGAATGCATTGAAGAGTTTTGTGTGACAAGAAGTGTGACTTGAAAAATCCGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| CDS-3UTR CCA 90 bp | GCTCAGCAGCGACCTTCAGGAAGTCAAGATTTCAAAGCCGCATCAAGTTTTCCTAGGGACGTAATTTTCTaGGAAGCAGTCCTTGGCGAA | + |
|
Preference number: 4 (lower is better) Translates to: AQQRPSGSQDFKAASSFPRDVIF*EAVLGE Trigger: TTCGCCAAGGACTGCTTCCCAGAAAATTACGTCCCT...AGGAAAACTTGATGCGGCTTTGAAATCTTGACTTCCTGAAGGTCGCTGCTGAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| CDS-3UTR CCA 90 bp | ATCATTTGGGGCCATTGTGAGGCATGGTCTCTTGCTACTGGAGTAAGTCTCCTGATCTGGGTAAGAGAGTaGACGGACGTTGTCATAGTA | + |
|
Preference number: 4 (lower is better) Translates to: IIWGHCEAWSLATGVSLLIWVRE*TDVVIV Trigger: TACTATGACAACGTCCGTCCACTCTCTTACCCAGAT...CAGGAGACTTACTCCAGTAGCAAGAGACCATGCCTCACAATGGCCCCAAATGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| CDS-3UTR GCA 90 bp | GCTGTACCAGTCAGAGCGTATTATGTTGGTAAGATGTCTGAGTTTCATGGGAAATCCGCAGATCAGACTTaGAGCCCACCAACAGCATCT | + |
|
Preference number: 4 (lower is better) Translates to: AVPVRAYYVGKMSEFHGKSADQT*SPPTAS Trigger: AGATGCTGTTGGTGGGCTGCAAGTCTGATCTGCGGA...TTTCCCATGAAACTCAGACATCTTACCAACATAATACGCTCTGACTGGTACAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| CDS-3UTR GCA 90 bp | CCGCTTAACGTTTTTATTTGTCTTATTTACACACGCCAAGGTGGCGACGTGAAATCCGCAGATCAGACTTaGAGCCCACCAACAGCATCT | + |
|
Preference number: 4 (lower is better) Translates to: PLNVFICLIYTRQGGDVKSADQT*SPPTAS Trigger: AGATGCTGTTGGTGGGCTGCAAGTCTGATCTGCGGA...TTTCACGTCGCCACCTTGGCGTGTGTAAATAAGACAAATAAAAACGTTAAGCGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| CDS-3UTR GCA 90 bp | AATAAAAAGCAACACTCTCTTCTAGTTGATCTACGCAATCTCTGTAGTGCTGGTGTGGCTGCTCCGATCTaGTTGGCCATATTTGCCCCC | + |
|
Preference number: 4 (lower is better) Translates to: NKKQHSLLVDLRNLCSAGVAAPI*LAIFAP Trigger: GGGGGCAAATATGGCCAAGCAGATCGGAGCAGCCAC...ACCAGCACTACAGAGATTGCGTAGATCAACTAGAAGAGAGTGTTGCTTTTTATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| CDS-3UTR GCA 90 bp | CCCAGACACGAGTGCTTTTGCTCTGTGTATTTGACGTATAATTTTGTTCCAGACCGCTTTGTGGCCCTCTaGGATTTGTTCCGCTTAACG | + |
|
Preference number: 4 (lower is better) Translates to: PRHECFCSVYLTYNFVPDRFVAL*DLFRLT Trigger: CGTTAAGCGGAACAAATCGCAGAGGGCCACAAAGCG...GTCTGGAACAAAATTATACGTCAAATACACAGAGCAAAAGCACTCGTGTCTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| CDS-3UTR CCA 90 bp | GGACAGGATTCCGAAAAGTGGGTATCCTTTCAAGGGCCTCCTAAGCCTGTATCTTTACTGGATAATTTCTaGCTGGCTCTTCTCTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: GQDSEKWVSFQGPPKPVSLLDNF*LALLSF Trigger: GAAGGAGAGAAGAGCCAGCCAGAAATTATCCAGTAA...AGATACAGGCTTAGGAGGCCCTTGAAAGGATACCCACTTTTCGGAATCCTGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
||
| CDS-3UTR CCA 90 bp | AATAAAAAGCAACACTCTCTTCTAGTTGATCTACGCAATCTCTGTAGTGCTGGTTCCTTGGCGAAGACGTaGAGCAGCGCGGTTTTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: NKKQHSLLVDLRNLCSAGSLAKT*SSAVFP Trigger: TGGGAAAACCGCGCTGCTCCACGTCTTCGCCAAGGA...ACCAGCACTACAGAGATTGCGTAGATCAACTAGAAGAGAGTGTTGCTTTTTATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| CDS-3UTR CCA 90 bp | CAGGATTCCGAAAAGTGGGTATCCTTTCAAGGGCCTCCTAAGCCTGTATCTATGACTGTCCAGAGTCTCTaGTCTACTGATGTCAAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: QDSEKWVSFQGPPKPVSMTVQSL*STDVKA Trigger: TGCTTTGACATCAGTAGACCAGAGACTCTGGACAGT...CATAGATACAGGCTTAGGAGGCCCTTGAAAGGATACCCACTTTTCGGAATCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
||
| CDS-3UTR TCA 90 bp | CCGCTTTGTGGCCCTCTGCGATTTGTTCCGCTTAACGTTTTTATTTGTCTTATTACTTACCTGGTCATATaGCACAGGAGTCTGCCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: PLCGPLRFVPLNVFICLITYLVI*HRSLPV Trigger: CACAGGCAGACTCCTGTGTCATATGACCAGGTAAGT...AATAAGACAAATAAAAACGTTAAGCGGAACAAATCGCAGAGGGCCACAAAGCGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| CDS-3UTR CCA 90 bp | CCGCTTAACGTTTTTATTTGTCTTATTTACACACGCCAAGGTGGCGACGTGAAACACTGCATCAGAATCTaGGTAAGAGAGTGGACGGAC | + |
|
Preference number: 4 (lower is better) Translates to: PLNVFICLIYTRQGGDVKHCIRI*VREWTD Trigger: GTCCGTCCACTCTCTTACCCAGATTCTGATGCAGTG...TTTCACGTCGCCACCTTGGCGTGTGTAAATAAGACAAATAAAAACGTTAAGCGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| CDS-3UTR CCA 90 bp | ACTTCTTGTCACACAAAACTCTTCAATGCATTCGCTTCTCACCACTCGGTCTACTTACACACGCCAAGGTaGCGACGTGAAAAATGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: TSCHTKLFNAFASHHSVYLHTPR*RREKCL Trigger: GAGACATTTTTCACGTCGCCACCTTGGCGTGTGTAA...GTAGACCGAGTGGTGAGAAGCGAATGCATTGAAGAGTTTTGTGTGACAAGAAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| 3UTR CAA 72 bp | CTTTTGCTACAGAAAGTCAGACAGCTCCTATTCCAGTaGACTCCTGCTTCATCTCTTGAAAAAGCGCTGCGT | + |
|
Preference number: 4 (lower is better) Translates to: LLLQKVRQLLFQ*TPASSLEKALR Trigger: ACGCAGCGCTTTTTCAAGAGATGAAGCAGGAGTCAACTGGAATAGGAGCTGTCTGACTTTCTGTAGCAAAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| CDS-3UTR TCA 90 bp | CAAAGCATAATGCTGTACCAGTCAGAGCGTATTATGTTGGTAAGATGTCTGAGTGTTCCACTAATGTGCTaGCATCTGTCCGCAGATCAG | + |
|
Preference number: 4 (lower is better) Translates to: QSIMLYQSERIMLVRCLSVPLMC*HLSADQ Trigger: CTGATCTGCGGACAGATGTCAGCACATTAGTGGAAC...ACTCAGACATCTTACCAACATAATACGCTCTGACTGGTACAGCATTATGCTTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
||
| CDS-3UTR CCA 90 bp | CCGCTTTGTGGCCCTCTGCGATTTGTTCCGCTTAACGTTTTTATTTGTCTTATTAGGGACGTAATTTTCTaGGAAGCAGTCCTTGGCGAA | + |
|
Preference number: 4 (lower is better) Translates to: PLCGPLRFVPLNVFICLIRDVIF*EAVLGE Trigger: TTCGCCAAGGACTGCTTCCCAGAAAATTACGTCCCT...AATAAGACAAATAAAAACGTTAAGCGGAACAAATCGCAGAGGGCCACAAAGCGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
||
| CDS-3UTR CCA 90 bp | CACTTCTTGTCACACAAAACTCTTCAATGCATTCGCTTCTCACCACTCGGTCTAACTGTCCAGAGTCTCTaGTCTACTGATGTCAAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: HFLSHKTLQCIRFSPLGLTVQSL*STDVKA Trigger: TGCTTTGACATCAGTAGACCAGAGACTCTGGACAGT...TAGACCGAGTGGTGAGAAGCGAATGCATTGAAGAGTTTTGTGTGACAAGAAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
||
| CDS-3UTR CCA 90 bp | AGCGCTCGCCTGTTCATAGCTCCCTTTGTTTTTGGCGGATTTTTCAAGTCACACTTGGGACAAAACTCCTaGATTTCACCTTTCCACTTT | + |
|
Preference number: 4 (lower is better) Translates to: SARLFIAPFVFGGFFKSHLGQNS*ISPFHF Trigger: AAAGTGGAAAGGTGAAATCCAGGAGTTTTGTCCCAA...GTGTGACTTGAAAAATCCGCCAAAAACAAAGGGAGCTATGAACAGGCGAGCGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
||
| CDS-3UTR CCA 90 bp | TTACTAAAGCATGAGCAAATGGGGGTTTTGCCAGAACAGCATTTCTTTGAAGGAGCCATATTTGCCCCCTaGTCATATGACACAGGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: LLKHEQMGVLPEQHFFEGAIFAP*SYDTGV Trigger: GACTCCTGTGTCATATGACCAGGGGGCAAATATGGC...TCCTTCAAAGAAATGCTGTTCTGGCAAAACCCCCATTTGCTCATGCTTTAGTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| CDS-3UTR CCA 90 bp | CAATATTTAAATACAGAAAGCACTTGCCAGCGATTTTGTAATACTGCCCAAAGCCTGCTCCGATCTGCTTaGCCATATTTGCCCCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: QYLNTESTCQRFCNTAQSLLRSA*PYLPPG Trigger: ACCAGGGGGCAAATATGGCCAAGCAGATCGGAGCAG...GCTTTGGGCAGTATTACAAAATCGCTGGCAAGTGCTTTCTGTATTTAAATATTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| 3UTR CAA 72 bp | AGCCTGTATCTATGTGACTTTGGCTGTGCACTTCATTaGACTCCATCTTTCCGGTTTGCTCCTGCTTTTTAC | + |
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Preference number: 4 (lower is better) Translates to: SLYLCDFGCALH*TPSFRFAPAFY Trigger: GTAAAAAGCAGGAGCAAACCGGAAAGATGGAGTCAAATGAAGTGCACAGCCAAAGTCACATAGATACAGGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
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| 3UTR CAA 72 bp | GGCATGTGCGAAATCCGCTTTGTGGCCCTCTGCGATTaGTTCCGCTTAACGTTTTTATTTGTCTTATTTACA | + |
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Preference number: 4 (lower is better) Translates to: GMCEIRFVALCD*FRLTFLFVLFT Trigger: TGTAAATAAGACAAATAAAAACGTTAAGCGGAACAAATCGCAGAGGGCCACAAAGCGGATTTCGCACATGCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| CDS-3UTR CCA 90 bp | CCGCTTTGTGGCCCTCTGCGATTTGTTCCGCTTAACGTTTTTATTTGTCTTATTTTACTGGATAATTTCTaGCTGGCTCTTCTCTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: PLCGPLRFVPLNVFICLILLDNF*LALLSF Trigger: GAAGGAGAGAAGAGCCAGCCAGAAATTATCCAGTAA...AATAAGACAAATAAAAACGTTAAGCGGAACAAATCGCAGAGGGCCACAAAGCGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| CDS-3UTR CCA 90 bp | CATAATGCTGTACCAGTCAGAGCGTATTATGTTGGTAAGATGTCTGAGTTTCATAGCATTCTATGTAAGTaGCTGCTCCGATCTGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: HNAVPVRAYYVGKMSEFHSILCK*LLRSAW Trigger: CCAAGCAGATCGGAGCAGCCACTTACATAGAATGCT...ATGAAACTCAGACATCTTACCAACATAATACGCTCTGACTGGTACAGCATTATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| CDS-3UTR CCA 90 bp | GTGGCCCTCTGCGATTTGTTCCGCTTAACGTTTTTATTTGTCTTATTTACACACGACAACACACTTACCTaGTCATATGACACAGGAGTC | + |
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Preference number: 4 (lower is better) Translates to: VALCDLFRLTFLFVLFTHDNTLT*SYDTGV Trigger: GACTCCTGTGTCATATGACCAGGTAAGTGTGTTGTC...GTGTGTAAATAAGACAAATAAAAACGTTAAGCGGAACAAATCGCAGAGGGCCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| CDS-3UTR CCA 90 bp | ATAATGCTGTACCAGTCAGAGCGTATTATGTTGGTAAGATGTCTGAGTTTCATGATCTGGGTAAGAGAGTaGACGGACGTTGTCATAGTA | + |
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Preference number: 4 (lower is better) Translates to: IMLYQSERIMLVRCLSFMIWVRE*TDVVIV Trigger: TACTATGACAACGTCCGTCCACTCTCTTACCCAGAT...CATGAAACTCAGACATCTTACCAACATAATACGCTCTGACTGGTACAGCATTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| CDS-3UTR CCA 90 bp | TTGTTCCGCTTAACGTTTTTATTTGTCTTATTTACACACGCCAAGGTGGCGACGTTGGGACAAAACTCCTaGATTTCACCTTTCCACTTT | + |
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Preference number: 4 (lower is better) Translates to: LFRLTFLFVLFTHAKVATLGQNS*ISPFHF Trigger: AAAGTGGAAAGGTGAAATCCAGGAGTTTTGTCCCAA...CGTCGCCACCTTGGCGTGTGTAAATAAGACAAATAAAAACGTTAAGCGGAACAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| CDS-3UTR GCA 90 bp | GTGGCCCTCTGCGATTTGTTCCGCTTAACGTTTTTATTTGTCTTATTTACACACAAAGCAAATGAGCACTaGATCAGAATCTGGGTAAGA | + |
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Preference number: 4 (lower is better) Translates to: VALCDLFRLTFLFVLFTHKANEH*IRIWVR Trigger: TCTTACCCAGATTCTGATGCAGTGCTCATTTGCTTT...GTGTGTAAATAAGACAAATAAAAACGTTAAGCGGAACAAATCGCAGAGGGCCAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| 3UTR CAA 72 bp | GAAGTAAAAGAAAGAATTTCCGTCAGCAGCGAGACTTaGGAGAGACACTGGAAAGTGTTGAAATACCACAAA | + |
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Preference number: 4 (lower is better) Translates to: EVKERISVSSET*ERHWKVLKYHK Trigger: TTTGTGGTATTTCAACACTTTCCAGTGTCTCTCCAAAGTCTCGCTGCTGACGGAAATTCTTTCTTTTACTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| CDS-3UTR TCA 90 bp | CAATATTTAAATACAGAAAGCACTTGCCAGCGATTTTGTAATACTGCCCAAAGCCGTGAAAAATGTCTCTaGCGCTGTTTTCTGACTGTA | + |
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Preference number: 4 (lower is better) Translates to: QYLNTESTCQRFCNTAQSREKCL*RCFLTV Trigger: TACAGTCAGAAAACAGCGTCAGAGACATTTTTCACG...GCTTTGGGCAGTATTACAAAATCGCTGGCAAGTGCTTTCTGTATTTAAATATTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| CDS-3UTR GCA 90 bp | CAATATTTAAATACAGAAAGCACTTGCCAGCGATTTTGTAATACTGCCCAAAGCAAAGCAAATGAGCACTaGATCAGAATCTGGGTAAGA | + |
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Preference number: 4 (lower is better) Translates to: QYLNTESTCQRFCNTAQSKANEH*IRIWVR Trigger: TCTTACCCAGATTCTGATGCAGTGCTCATTTGCTTT...GCTTTGGGCAGTATTACAAAATCGCTGGCAAGTGCTTTCTGTATTTAAATATTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| 3UTR CAA 72 bp | AGACACTGGAAAGTGTTGAAATACCACAAAACTGTCTaGAATTGGAACATACCTAATATGCCAAATGGACTT | + |
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Preference number: 4 (lower is better) Translates to: RHWKVLKYHKTV*NWNIPNMPNGL Trigger: AAGTCCATTTGGCATATTAGGTATGTTCCAATTCAAGACAGTTTTGTGGTATTTCAACACTTTCCAGTGTCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| CDS-3UTR CAA 90 bp | TGTAGAAACCCCTCTAGCTCCCCACAGCTTCTAGTATGGCGATTTGCTCTTGCATCTGGGAAGCAGTCCTaGGCGAAGACGTGGAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: CRNPSSSPQLLVWRFALASGKQS*AKTWSS Trigger: GCTGCTCCACGTCTTCGCCAAGGACTGCTTCCCAGA...TGCAAGAGCAAATCGCCATACTAGAAGCTGTGGGGAGCTAGAGGGGTTTCTACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| CDS TCA 90 bp | ATGACACAGGAGTCTGCCTGTGATTTGAGAGTTCCACTAATGTGCTaGCATCTGTCCGCAGATCAGACTTGCAGCCCACCAACAGCATCT | + |
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Preference number: 5 (lower is better) Translates to: MTQESACDLRVPLMC*HLSADQTCSPPTAS Trigger: AGATGCTGTTGGTGGGCTGCAAGTCTGATCTGCGGACAGATGTCAGCACATTAGTGGAACTCTCAAATCACAGGCAGACTCCTGTGTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
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| CDS CCA 90 bp | ACTGTAAAGCTGAGCATTCTATGTAAGTGGCTGCTCCGATCTGCTTaGCCATATTTGCCCCCTGGTCATATGACACAGGAGTCTGCCTGT | + |
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Preference number: 5 (lower is better) Translates to: TVKLSILCKWLLRSA*PYLPPGHMTQESAC Trigger: ACAGGCAGACTCCTGTGTCATATGACCAGGGGGCAAATATGGCCAAGCAGATCGGAGCAGCCACTTACATAGAATGCTCAGCTTTACAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| CDS-3UTR CAA 90 bp | CCCAGACACGAGTGCTTTTGCTCTGTGTATTTGACGTATAATTTTGTTCCAGACGCTGCTCCGATCTGCTaGGCCATATTTGCCCCCTGG | + |
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Preference number: 5 (lower is better) Translates to: PRHECFCSVYLTYNFVPDAAPIC*AIFAPW Trigger: CCAGGGGGCAAATATGGCCAAGCAGATCGGAGCAGC...GTCTGGAACAAAATTATACGTCAAATACACAGAGCAAAAGCACTCGTGTCTGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| CDS TCA 90 bp | TTGGCCATATTTGCCCCCTGGTCATATGACACAGGAGTCTGCCTGTaGTTTGAGAGTTCCACTAATGTGCTGACATCTGTCCGCAGATCA | + |
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Preference number: 5 (lower is better) Translates to: LAIFAPWSYDTGVCL*FESSTNVLTSVRRS Trigger: TGATCTGCGGACAGATGTCAGCACATTAGTGGAACTCTCAAATCACAGGCAGACTCCTGTGTCATATGACCAGGGGGCAAATATGGCCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| CDS-3UTR CAA 90 bp | TTACTAAAGCATGAGCAAATGGGGGTTTTGCCAGAACAGCATTTCTTTGAAGGATCTGGGAAGCAGTCCTaGGCGAAGACGTGGAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LLKHEQMGVLPEQHFFEGSGKQS*AKTWSS Trigger: GCTGCTCCACGTCTTCGCCAAGGACTGCTTCCCAGA...TCCTTCAAAGAAATGCTGTTCTGGCAAAACCCCCATTTGCTCATGCTTTAGTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| CDS-3UTR CAA 90 bp | CACCACTCGGTCTACATGCCGAAACTAAGGACAGGATTCCGAAAAGTGGGTATCGTGGCCCTCTGCGATTaGTTCCGCTTAACGTTTTTA | + |
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Preference number: 5 (lower is better) Translates to: HHSVYMPKLRTGFRKVGIVALCD*FRLTFL Trigger: TAAAAACGTTAAGCGGAACAAATCGCAGAGGGCCAC...GATACCCACTTTTCGGAATCCTGTCCTTAGTTTCGGCATGTAGACCGAGTGGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| CDS TCA 90 bp | AGTGACAACACACTTACCTGGTCATATGACACAGGAGTCTGCCTGTaGTTTGAGAGTTCCACTAATGTGCTGACATCTGTCCGCAGATCA | + |
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Preference number: 5 (lower is better) Translates to: SDNTLTWSYDTGVCL*FESSTNVLTSVRRS Trigger: TGATCTGCGGACAGATGTCAGCACATTAGTGGAACTCTCAAATCACAGGCAGACTCCTGTGTCATATGACCAGGTAAGTGTGTTGTCACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| CDS-3UTR CAA 90 bp | CAAAGCATAATGCTGTACCAGTCAGAGCGTATTATGTTGGTAAGATGTCTGAGTTGTGCGAAATCCGCTTaGTGGCCCTCTGCGATTTGT | + |
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Preference number: 5 (lower is better) Translates to: QSIMLYQSERIMLVRCLSCAKSA*WPSAIC Trigger: ACAAATCGCAGAGGGCCACAAAGCGGATTTCGCACA...ACTCAGACATCTTACCAACATAATACGCTCTGACTGGTACAGCATTATGCTTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| CDS-3UTR CAA 90 bp | ATCATTTGGGGCCATTGTGAGGCATGGTCTCTTGCTACTGGAGTAAGTCTCCTGGCTCAACTCTATTCTTaGTGTGTCGATTTCAAAACT | + |
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Preference number: 5 (lower is better) Translates to: IIWGHCEAWSLATGVSLLAQLYS*CVDFKT Trigger: AGTTTTGAAATCGACACACAAAGAATAGAGTTGAGC...CAGGAGACTTACTCCAGTAGCAAGAGACCATGCCTCACAATGGCCCCAAATGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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| CDS-3UTR CAA 90 bp | CTAAAGCATGAGCAAATGGGGGTTTTGCCAGAACAGCATTTCTTTGAAGGAAGTGTACAGCTCTTCGCTTaGTCCTTTCGTAAGTCCGTA | + |
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Preference number: 5 (lower is better) Translates to: LKHEQMGVLPEQHFFEGSVQLFA*SFRKSV Trigger: TACGGACTTACGAAAGGACAAAGCGAAGAGCTGTAC...ACTTCCTTCAAAGAAATGCTGTTCTGGCAAAACCCCCATTTGCTCATGCTTTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| CDS-3UTR CAA 90 bp | GGTTTACTAAAGCATGAGCAAATGGGGGTTTTGCCAGAACAGCATTTCTTTGAAGAGTCTGCCTGTGATTaGAGAGTTCCACTAATGTGC | + |
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Preference number: 5 (lower is better) Translates to: GLLKHEQMGVLPEQHFFEESACD*RVPLMC Trigger: GCACATTAGTGGAACTCTCAAATCACAGGCAGACTC...TTCAAAGAAATGCTGTTCTGGCAAAACCCCCATTTGCTCATGCTTTAGTAAACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| CDS-3UTR CAA 90 bp | CATAATGCTGTACCAGTCAGAGCGTATTATGTTGGTAAGATGTCTGAGTTTCATTCTGCTTGGCCATATTaGCCCCCTGGTCATATGACA | + |
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Preference number: 5 (lower is better) Translates to: HNAVPVRAYYVGKMSEFHSAWPY*PPGHMT Trigger: TGTCATATGACCAGGGGGCAAATATGGCCAAGCAGA...ATGAAACTCAGACATCTTACCAACATAATACGCTCTGACTGGTACAGCATTATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| CDS-3UTR CAA 90 bp | GCGGATTTTTCAAGTCACACTTCTTGTCACACAAAACTCTTCAATGCATTCGCTGCTCAACTCTATTCTTaGTGTGTCGATTTCAAAACT | + |
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Preference number: 5 (lower is better) Translates to: ADFSSHTSCHTKLFNAFAAQLYS*CVDFKT Trigger: AGTTTTGAAATCGACACACAAAGAATAGAGTTGAGC...AGCGAATGCATTGAAGAGTTTTGTGTGACAAGAAGTGTGACTTGAAAAATCCGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
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| CDS CCA 72 bp | TTGGCGAAGACGTGGAGCAGCGCGGTTTTCCCACACTaGCTGTCGCCCACTACTACTATCTTGCATTTCACG | + |
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Preference number: 6 (lower is better) Translates to: LAKTWSSAVFPH*LSPTTTILHFT Trigger: CGTGAAATGCAAGATAGTAGTAGTGGGCGACAGCCAGTGTGGGAAAACCGCGCTGCTCCACGTCTTCGCCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
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| CDS CAA 72 bp | CTATGTAAGTGGCTGCTCCGATCTGCTTGGCCATATTaGCCCCCTGGTCATATGACACAGGAGTCTGCCTGT | + |
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Preference number: 6 (lower is better) Translates to: LCKWLLRSAWPY*PPGHMTQESAC Trigger: ACAGGCAGACTCCTGTGTCATATGACCAGGGGGCAAATATGGCCAAGCAGATCGGAGCAGCCACTTACATAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| CDS TCA 72 bp | GAGTCTGCCTGTGATTTGAGAGTTCCACTAATGTGCTaGCATCTGTCCGCAGATCAGACTTGCAGCCCACCA | + |
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Preference number: 6 (lower is better) Translates to: ESACDLRVPLMC*HLSADQTCSPP Trigger: TGGTGGGCTGCAAGTCTGATCTGCGGACAGATGTCAGCACATTAGTGGAACTCTCAAATCACAGGCAGACTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
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| CDS CCA 72 bp | CTGAGCATTCTATGTAAGTGGCTGCTCCGATCTGCTTaGCCATATTTGCCCCCTGGTCATATGACACAGGAG | + |
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Preference number: 6 (lower is better) Translates to: LSILCKWLLRSA*PYLPPGHMTQE Trigger: CTCCTGTGTCATATGACCAGGGGGCAAATATGGCCAAGCAGATCGGAGCAGCCACTTACATAGAATGCTCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017288.9 |
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| CDS CAA 90 bp | TTTGAGAGTTCCACTAATGTGCTGACATCTGTCCGCAGATCAGACTaGCAGCCCACCAACAGCATCTTGGTATTGGGACAAAACTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: FESSTNVLTSVRRSD*QPTNSILVLGQNSW Trigger: CCAGGAGTTTTGTCCCAATACCAAGATGCTGTTGGTGGGCTGCAAGTCTGATCTGCGGACAGATGTCAGCACATTAGTGGAACTCTCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017288.9 ENSMUST00000154545.2 |
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| CDS TCA 72 bp | ACACTTACCTGGTCATATGACACAGGAGTCTGCCTGTaGTTTGAGAGTTCCACTAATGTGCTGACATCTGTC | + |
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Preference number: 6 (lower is better) Translates to: TLTWSYDTGVCL*FESSTNVLTSV Trigger: GACAGATGTCAGCACATTAGTGGAACTCTCAAATCACAGGCAGACTCCTGTGTCATATGACCAGGTAAGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154545.2 |
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