RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RND2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000001313

Ensembl transcript IDs: ENSMUST00000001347.7

Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTGAGGAGTGACAGCCTTCTACCCTCTAGCTCCTCCAACCAGAATTaGTCCTCTGCCTGCCCTGACCTTCCAGCCAGGGCCAGGAGGTCA +
Preference number: 1 (lower is better)
Translates to: VRSDSLLPSSSSNQN*SSACPDLPARARRS
Trigger: TGACCTCCTGGCCCTGGCTGGAAGGTCAGGGCAGGCAGAGGAGCAATTCTGGTTGGAGGAGCTAGAGGGTAGAAGGCTGTCACTCCTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
3UTR GCA 90 bp AGCCTTCTACCCTCTAGCTCCTCCAACCAGAATTGCTCCTCTGCCTaGCCTGACCTTCCAGCCAGGGCCAGGAGGTCAAAAAGTCCAGGA +
Preference number: 1 (lower is better)
Translates to: SLLPSSSSNQNCSSA*PDLPARARRSKSPG
Trigger: TCCTGGACTTTTTGACCTCCTGGCCCTGGCTGGAAGGTCAGGGCAGGCAGAGGAGCAATTCTGGTTGGAGGAGCTAGAGGGTAGAAGGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
3UTR GCA 90 bp AGGAGACTCAACCAAAGTCATTGCTTGGTTTCCCAAACCCCCACCTaGCCTATCCAAGTTCATGTACCAGATGCCTACCCTGTCAGCTCT +
Preference number: 1 (lower is better)
Translates to: RRLNQSHCLVSQTPT*PIQVHVPDAYPVSS
Trigger: AGAGCTGACAGGGTAGGCATCTGGTACATGAACTTGGATAGGGCAGGTGGGGGTTTGGGAAACCAAGCAATGACTTTGGTTGAGTCTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
3UTR CCA 90 bp AGAACAGATGTGGACTTGAGGGGAGAGACAGAGAAGGTCATCAAATaGACACTTTCCTTAGGGAAGGCAGATGGGATATGGGGACCAGGG +
Preference number: 1 (lower is better)
Translates to: RTDVDLRGETEKVIK*TLSLGKADGIWGPG
Trigger: CCCTGGTCCCCATATCCCATCTGCCTTCCCTAAGGAAAGTGTCCATTTGATGACCTTCTCTGTCTCTCCCCTCAAGTCCACATCTGTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
3UTR GCA 90 bp GACACTTTCCTTAGGGAAGGCAGATGGGATATGGGGACCAGGGTATaGAAGGAAGTTACACTTTACATAGGAGACTCAACCAAAGTCATT +
Preference number: 1 (lower is better)
Translates to: DTFLREGRWDMGTRV*KEVTLYIGDSTKVI
Trigger: AATGACTTTGGTTGAGTCTCCTATGTAAAGTGTAACTTCCTTGCATACCCTGGTCCCCATATCCCATCTGCCTTCCCTAAGGAAAGTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
3UTR CCA 90 bp GACAGAGAAGGTCATCAAATGGACACTTTCCTTAGGGAAGGCAGATaGGATATGGGGACCAGGGTATGCAAGGAAGTTACACTTTACATA +
Preference number: 1 (lower is better)
Translates to: DREGHQMDTFLREGR*DMGTRVCKEVTLYI
Trigger: TATGTAAAGTGTAACTTCCTTGCATACCCTGGTCCCCATATCCCATCTGCCTTCCCTAAGGAAAGTGTCCATTTGATGACCTTCTCTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
3UTR CCA 90 bp TTTATTTGCGGGCTGATGGAGAAAGGGCAAGCTAGAACTGGTTGGTaGGTTGATGGGAGGAAAGAGCTTCTTGCTTTAAAATTTAGTGCG +
Preference number: 1 (lower is better)
Translates to: FICGLMEKGQARTGW*VDGRKELLALKFSA
Trigger: CGCACTAAATTTTAAAGCAAGAAGCTCTTTCCTCCCATCAACCCACCAACCAGTTCTAGCTTGCCCTTTCTCCATCAGCCCGCAAATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
3UTR CCA 90 bp GGCTTTATTTGCGGGCTGATGGAGAAAGGGCAAGCTAGAACTGGTTaGTGGGTTGATGGGAGGAAAGAGCTTCTTGCTTTAAAATTTAGT +
Preference number: 1 (lower is better)
Translates to: GFICGLMEKGQARTG*WVDGRKELLALKFS
Trigger: ACTAAATTTTAAAGCAAGAAGCTCTTTCCTCCCATCAACCCACCAACCAGTTCTAGCTTGCCCTTTCTCCATCAGCCCGCAAATAAAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
3UTR GCA 90 bp ATGCAAGGAAGTTACACTTTACATAGGAGACTCAACCAAAGTCATTaGTTGGTTTCCCAAACCCCCACCTGCCCTATCCAAGTTCATGTA +
Preference number: 1 (lower is better)
Translates to: MQGSYTLHRRLNQSH*LVSQTPTCPIQVHV
Trigger: TACATGAACTTGGATAGGGCAGGTGGGGGTTTGGGAAACCAAGCAATGACTTTGGTTGAGTCTCCTATGTAAAGTGTAACTTCCTTGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
3UTR GCA 90 bp GTTGATGGGAGGAAAGAGCTTCTTGCTTTAAAATTTAGTGCGCATTaGCTGAAGGTTAGCATGTACAGAACAGATGTGGACTTGAGGGGA +
Preference number: 1 (lower is better)
Translates to: VDGRKELLALKFSAH*LKVSMYRTDVDLRG
Trigger: TCCCCTCAAGTCCACATCTGTTCTGTACATGCTAACCTTCAGGCAATGCGCACTAAATTTTAAAGCAAGAAGCTCTTTCCTCCCATCAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
3UTR-3UTR GCA 90 bp CCTGCCCTATCCAAGTTCATGTACCAGATGCCTACCCTGTCAGCTCTCTCAGCTAATTGCTCCTCTGCCTaGCCTGACCTTCCAGCCAGG +
Preference number: 2 (lower is better)
Translates to: PALSKFMYQMPTLSALSANCSSA*PDLPAR
Trigger: CCTGGCTGGAAGGTCAGGGCAGGCAGAGGAGCAATT...AGCTGAGAGAGCTGACAGGGTAGGCATCTGGTACATGAACTTGGATAGGGCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
3UTR-3UTR GCA 90 bp AAAGAGCTTCTTGCTTTAAAATTTAGTGCGCATTGCCTGAAGGTTAGCATGTACTCCCAAACCCCCACCTaGCCTATCCAAGTTCATGTA +
Preference number: 2 (lower is better)
Translates to: KELLALKFSAHCLKVSMYSQTPT*PIQVHV
Trigger: TACATGAACTTGGATAGGGCAGGTGGGGGTTTGGGA...GTACATGCTAACCTTCAGGCAATGCGCACTAAATTTTAAAGCAAGAAGCTCTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
3UTR CCA 72 bp TGCGGGCTGATGGAGAAAGGGCAAGCTAGAACTGGTTaGTGGGTTGATGGGAGGAAAGAGCTTCTTGCTTTA +
Preference number: 3 (lower is better)
Translates to: CGLMEKGQARTG*WVDGRKELLAL
Trigger: TAAAGCAAGAAGCTCTTTCCTCCCATCAACCCACCAACCAGTTCTAGCTTGCCCTTTCTCCATCAGCCCGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
3UTR GCA 72 bp CTTAGGGAAGGCAGATGGGATATGGGGACCAGGGTATaGAAGGAAGTTACACTTTACATAGGAGACTCAACC +
Preference number: 3 (lower is better)
Translates to: LREGRWDMGTRV*KEVTLYIGDST
Trigger: GGTTGAGTCTCCTATGTAAAGTGTAACTTCCTTGCATACCCTGGTCCCCATATCCCATCTGCCTTCCCTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
3UTR CCA 72 bp AAATGGACACTTTCCTTAGGGAAGGCAGATGGGATATaGGGACCAGGGTATGCAAGGAAGTTACACTTTACA +
Preference number: 3 (lower is better)
Translates to: KWTLSLGKADGI*GPGYARKLHFT
Trigger: TGTAAAGTGTAACTTCCTTGCATACCCTGGTCCCCATATCCCATCTGCCTTCCCTAAGGAAAGTGTCCATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
3UTR GCA 72 bp AGGAAAGAGCTTCTTGCTTTAAAATTTAGTGCGCATTaGCTGAAGGTTAGCATGTACAGAACAGATGTGGAC +
Preference number: 3 (lower is better)
Translates to: RKELLALKFSAH*LKVSMYRTDVD
Trigger: GTCCACATCTGTTCTGTACATGCTAACCTTCAGGCAATGCGCACTAAATTTTAAAGCAAGAAGCTCTTTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR TCA 90 bp CAGGAGGTCAAAAAGTCCAGGAGCACCCACGGGAACAACCGTGTCTCTCACCCAGGCCGTCCCGACAGTTaGGTGGATCGCTGCAGTCCC +
Preference number: 4 (lower is better)
Translates to: QEVKKSRSTHGNNRVSHPGRPDS*VDRCSP
Trigger: GGGACTGCAGCGATCCACTCAACTGTCGGGACGGCC...TGGGTGAGAGACACGGTTGTTCCCGTGGGTGCTCCTGGACTTTTTGACCTCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR CCA 90 bp GCCTGCCCTGACCTTCCAGCCAGGGCCAGGAGGTCAAAAAGTCCAGGAGCACCCATAGCTCCCTCAGTGTaGCCAGGTCAGTCCGCATGT +
Preference number: 4 (lower is better)
Translates to: ACPDLPARARRSKSPGAPIAPSV*PGQSAC
Trigger: ACATGCGGACTGACCTGGCCACACTGAGGGAGCTAT...GGGTGCTCCTGGACTTTTTGACCTCCTGGCCCTGGCTGGAAGGTCAGGGCAGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR GCA 90 bp AAAGTCCAGGAGCACCCACGGGAACAACCGTGTCTCTCACCCAGCCCTCTCCCCGCCAGCACAGTACCCTaGTCATGTGTGACAGGGATG +
Preference number: 4 (lower is better)
Translates to: KVQEHPREQPCLSPSPLPASTVP*SCVTGM
Trigger: CATCCCTGTCACACATGAGCAGGGTACTGTGCTGGC...GGGGAGAGGGCTGGGTGAGAGACACGGTTGTTCCCGTGGGTGCTCCTGGACTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR CCA 90 bp CCTTCCAGCCAGGGCCAGGAGGTCAAAAAGTCCAGGAGCACCCACGGGAACAACGCCACTGTGGCCACATaGAAGACATCCCGGACACTG +
Preference number: 4 (lower is better)
Translates to: PSSQGQEVKKSRSTHGNNATVAT*KTSRTL
Trigger: CAGTGTCCGGGATGTCTTCCATGTGGCCACAGTGGC...GTTGTTCCCGTGGGTGCTCCTGGACTTTTTGACCTCCTGGCCCTGGCTGGAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR GCA 90 bp GCCTGCCCTGACCTTCCAGCCAGGGCCAGGAGGTCAAAAAGTCCAGGAGCACCCTTGGCTCGATCCTTATaGATCTCGCCCTCATTTCCC +
Preference number: 4 (lower is better)
Translates to: ACPDLPARARRSKSPGAPLARSL*ISPSFP
Trigger: GGGAAATGAGGGCGAGATGCATAAGGATCGAGCCAA...GGGTGCTCCTGGACTTTTTGACCTCCTGGCCCTGGCTGGAAGGTCAGGGCAGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR CCA 90 bp TCCCAAACCCCCACCTGCCCTATCCAAGTTCATGTACCAGATGCCTACCCTGTCCGGGGTAGGCGTCCTTaGCGAACACCTGCAGCAACG +
Preference number: 4 (lower is better)
Translates to: SQTPTCPIQVHVPDAYPVRGRRP*RTPAAT
Trigger: CGTTGCTGCAGGTGTTCGCCAAGGACGCCTACCCCG...GACAGGGTAGGCATCTGGTACATGAACTTGGATAGGGCAGGTGGGGGTTTGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR GCA 90 bp TCCCAAACCCCCACCTGCCCTATCCAAGTTCATGTACCAGATGCCTACCCTGTCTCCTTGGCGAACACCTaGAGCAACGCTGTCTTGCCG +
Preference number: 4 (lower is better)
Translates to: SQTPTCPIQVHVPDAYPVSLANT*SNAVLP
Trigger: CGGCAAGACAGCGTTGCTGCAGGTGTTCGCCAAGGA...GACAGGGTAGGCATCTGGTACATGAACTTGGATAGGGCAGGTGGGGGTTTGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR CCA 90 bp CAGGAGGTCAAAAAGTCCAGGAGCACCCACGGGAACAACCGTGTCTCTCACCCAAGTTCTCAAACACCGTaGGGACATAACTCCCGGGGT +
Preference number: 4 (lower is better)
Translates to: QEVKKSRSTHGNNRVSHPSSQTP*GHNSRG
Trigger: ACCCCGGGAGTTATGTCCCCACGGTGTTTGAGAACT...TGGGTGAGAGACACGGTTGTTCCCGTGGGTGCTCCTGGACTTTTTGACCTCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR CCA 90 bp GCCAGGGCCAGGAGGTCAAAAAGTCCAGGAGCACCCACGGGAACAACCGTGTCTACTGTCCAGTGTTTCTaGCCGGCTAATGTCAAAGCA +
Preference number: 4 (lower is better)
Translates to: ARARRSKSPGAPTGTTVSTVQCF*PANVKA
Trigger: TGCTTTGACATTAGCCGGCCAGAAACACTGGACAGT...AGACACGGTTGTTCCCGTGGGTGCTCCTGGACTTTTTGACCTCCTGGCCCTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR CCA 90 bp AAGGGTGTAGAGAATGGGGTGAGGAGTGACAGCCTTCTACCCTCTAGCTCCTCCCGAGAGAAGCCACTGTaGCCACATGGAAGACATCCC +
Preference number: 4 (lower is better)
Translates to: KGVENGVRSDSLLPSSSSREKPL*PHGRHP
Trigger: GGGATGTCTTCCATGTGGCCACAGTGGCTTCTCTCG...GGAGGAGCTAGAGGGTAGAAGGCTGTCACTCCTCACCCCATTCTCTACACCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR TCA 90 bp TTTCCCAAACCCCCACCTGCCCTATCCAAGTTCATGTACCAGATGCCTACCCTGAAGTATCCCACATGTTaGGCTCAATGCGGCGCTTGT +
Preference number: 4 (lower is better)
Translates to: FPKPPPALSKFMYQMPTLKYPTC*AQCGAC
Trigger: ACAAGCGCCGCATTGAGCTCAACATGTGGGATACTT...CAGGGTAGGCATCTGGTACATGAACTTGGATAGGGCAGGTGGGGGTTTGGGAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR CCA 90 bp CTGCCCTATCCAAGTTCATGTACCAGATGCCTACCCTGTCAGCTCTCTCAGCTAGCACCACCTTGGCATTaGGGCAAAACTCCTGAGTCT +
Preference number: 4 (lower is better)
Translates to: LPYPSSCTRCLPCQLSQLAPPWH*GKTPES
Trigger: AGACTCAGGAGTTTTGCCCCAATGCCAAGGTGGTGC...TAGCTGAGAGAGCTGACAGGGTAGGCATCTGGTACATGAACTTGGATAGGGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR GCA 90 bp CATGTACAGAACAGATGTGGACTTGAGGGGAGAGACAGAGAAGGTCATCAAATGGACACAGCTCCCACTTaGTTGGCCAGCACAGTACCC +
Preference number: 4 (lower is better)
Translates to: HVQNRCGLEGRDREGHQMDTAPT*LASTVP
Trigger: GGGTACTGTGCTGGCCAAGCAAGTGGGAGCTGTGTC...CATTTGATGACCTTCTCTGTCTCTCCCCTCAAGTCCACATCTGTTCTGTACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR TCA 90 bp CATGTACAGAACAGATGTGGACTTGAGGGGAGAGACAGAGAAGGTCATCAAATGTTGGGGCAAAACTCCTaGGTCTCTCCTTGCCACTTC +
Preference number: 4 (lower is better)
Translates to: HVQNRCGLEGRDREGHQMLGQNS*VSPCHF
Trigger: GAAGTGGCAAGGAGAGACTCAGGAGTTTTGCCCCAA...CATTTGATGACCTTCTCTGTCTCTCCCCTCAAGTCCACATCTGTTCTGTACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR CCA 90 bp CTGCCCTATCCAAGTTCATGTACCAGATGCCTACCCTGTCAGCTCTCTCAGCTATGTCGATCTCGAAGCTaGCAGTGTAGTTCTCAAACA +
Preference number: 4 (lower is better)
Translates to: LPYPSSCTRCLPCQLSQLCRSRS*QCSSQT
Trigger: TGTTTGAGAACTACACTGCCAGCTTCGAGATCGACA...TAGCTGAGAGAGCTGACAGGGTAGGCATCTGGTACATGAACTTGGATAGGGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR CCA 90 bp TGGGATATGGGGACCAGGGTATGCAAGGAAGTTACACTTTACATAGGAGACTCACAACCAGCACCACCTTaGCATTGGGGCAAAACTCCT +
Preference number: 4 (lower is better)
Translates to: WDMGTRVCKEVTLYIGDSQPAPP*HWGKTP
Trigger: AGGAGTTTTGCCCCAATGCCAAGGTGGTGCTGGTTG...TGAGTCTCCTATGTAAAGTGTAACTTCCTTGCATACCCTGGTCCCCATATCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR GCA 90 bp GCTTTAAAATTTAGTGCGCATTGCCTGAAGGTTAGCATGTACAGAACAGATGTGTCAGTACGACGTAGCTaGCTATGGCCACGGCCGAGA +
Preference number: 4 (lower is better)
Translates to: ALKFSAHCLKVSMYRTDVSVRRS*LWPRPR
Trigger: TCTCGGCCGTGGCCATAGGCAGCTACGTCGTACTGA...CACATCTGTTCTGTACATGCTAACCTTCAGGCAATGCGCACTAAATTTTAAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR CCA 90 bp ACCAGGGTATGCAAGGAAGTTACACTTTACATAGGAGACTCAACCAAAGTCATTCAGCTCCCACTTGCTTaGCCAGCACAGTACCCTGCT +
Preference number: 4 (lower is better)
Translates to: TRVCKEVTLYIGDSTKVIQLPLA*PAQYPA
Trigger: AGCAGGGTACTGTGCTGGCCAAGCAAGTGGGAGCTG...AATGACTTTGGTTGAGTCTCCTATGTAAAGTGTAACTTCCTTGCATACCCTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR TCA 90 bp GCTTTAAAATTTAGTGCGCATTGCCTGAAGGTTAGCATGTACAGAACAGATGTGCTCCTTGCCACTTCTTaGGGACACTGTCCAGTGTTT +
Preference number: 4 (lower is better)
Translates to: ALKFSAHCLKVSMYRTDVLLATS*GHCPVF
Trigger: AAACACTGGACAGTGTCCTCAAGAAGTGGCAAGGAG...CACATCTGTTCTGTACATGCTAACCTTCAGGCAATGCGCACTAAATTTTAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS CCA 90 bp GCATCTCGCCCTCATTTCCCCGGTCTGGCCGTCCCGACAGTTGAGTaGATCGCTGCAGTCCCCGGCGAGAGTCAGTACGACGTAGCTGCC +
Preference number: 5 (lower is better)
Translates to: ASRPHFPGLAVPTVE*IAAVPGESQYDVAA
Trigger: GGCAGCTACGTCGTACTGACTCTCGCCGGGGACTGCAGCGATCCACTCAACTGTCGGGACGGCCAGACCGGGGAAATGAGGGCGAGATGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS CCA 90 bp GATCGCTGCAGTCCCCGGCGAGAGTCAGTACGACGTAGCTGCCTATaGCCACGGCCGAGAGAAGCCACTGTGGCCACATGGAAGACATCC +
Preference number: 5 (lower is better)
Translates to: DRCSPRRESVRRSCL*PRPREATVATWKTS
Trigger: GGATGTCTTCCATGTGGCCACAGTGGCTTCTCTCGGCCGTGGCCATAGGCAGCTACGTCGTACTGACTCTCGCCGGGGACTGCAGCGATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS CCA 90 bp GCTCTTGGCTCGATCCTTATGCATCTCGCCCTCATTTCCCCGGTCTaGCCGTCCCGACAGTTGAGTGGATCGCTGCAGTCCCCGGCGAGA +
Preference number: 5 (lower is better)
Translates to: ALGSILMHLALISPV*PSRQLSGSLQSPAR
Trigger: TCTCGCCGGGGACTGCAGCGATCCACTCAACTGTCGGGACGGCCAGACCGGGGAAATGAGGGCGAGATGCATAAGGATCGAGCCAAGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR CAA 90 bp AAGTCCAGGAGCACCCACGGGAACAACCGTGTCTCTCACCCAGCCCTCTCCCCTGGACACAGCTCCCACTaGCTTGGCCAGCACAGTACC +
Preference number: 5 (lower is better)
Translates to: KSRSTHGNNRVSHPALSPGHSSH*LGQHST
Trigger: GGTACTGTGCTGGCCAAGCAAGTGGGAGCTGTGTCC...AGGGGAGAGGGCTGGGTGAGAGACACGGTTGTTCCCGTGGGTGCTCCTGGACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS TCA 90 bp TTATGCATCTCGCCCTCATTTCCCCGGTCTGGCCGTCCCGACAGTTaGGTGGATCGCTGCAGTCCCCGGCGAGAGTCAGTACGACGTAGC +
Preference number: 5 (lower is better)
Translates to: LCISPSFPRSGRPDS*VDRCSPRRESVRRS
Trigger: GCTACGTCGTACTGACTCTCGCCGGGGACTGCAGCGATCCACTCAACTGTCGGGACGGCCAGACCGGGGAAATGAGGGCGAGATGCATAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS CCA 90 bp CAGTACGACGTAGCTGCCTATGGCCACGGCCGAGAGAAGCCACTGTaGCCACATGGAAGACATCCCGGACACTGCGCTCAGAAGATCGGG +
Preference number: 5 (lower is better)
Translates to: QYDVAAYGHGREKPL*PHGRHPGHCAQKIG
Trigger: CCCGATCTTCTGAGCGCAGTGTCCGGGATGTCTTCCATGTGGCCACAGTGGCTTCTCTCGGCCGTGGCCATAGGCAGCTACGTCGTACTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR CAA 90 bp AAGTCCAGGAGCACCCACGGGAACAACCGTGTCTCTCACCCAGCCCTCTCCCCTCCAACCAGCACCACCTaGGCATTGGGGCAAAACTCC +
Preference number: 5 (lower is better)
Translates to: KSRSTHGNNRVSHPALSPPTSTT*ALGQNS
Trigger: GGAGTTTTGCCCCAATGCCAAGGTGGTGCTGGTTGG...AGGGGAGAGGGCTGGGTGAGAGACACGGTTGTTCCCGTGGGTGCTCCTGGACTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS CCA 90 bp CGTAGCTGCCTATGGCCACGGCCGAGAGAAGCCACTGTGGCCACATaGAAGACATCCCGGACACTGCGCTCAGAAGATCGGGAGGAACAT +
Preference number: 5 (lower is better)
Translates to: RSCLWPRPREATVAT*KTSRTLRSEDREEH
Trigger: ATGTTCCTCCCGATCTTCTGAGCGCAGTGTCCGGGATGTCTTCCATGTGGCCACAGTGGCTTCTCTCGGCCGTGGCCATAGGCAGCTACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS GCA 90 bp GGCCGAGAGAAGCCACTGTGGCCACATGGAAGACATCCCGGACACTaGGCTCAGAAGATCGGGAGGAACATTCAACGTAGGACACAGCTC +
Preference number: 5 (lower is better)
Translates to: GREKPLWPHGRHPGH*AQKIGRNIQRRTQL
Trigger: GAGCTGTGTCCTACGTTGAATGTTCCTCCCGATCTTCTGAGCGCAGTGTCCGGGATGTCTTCCATGTGGCCACAGTGGCTTCTCTCGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR CAA 90 bp AAGGGTGTAGAGAATGGGGTGAGGAGTGACAGCCTTCTACCCTCTAGCTCCTCCCTCCTGAGTCTCTCCTaGCCACTTCTTGAGGACACT +
Preference number: 5 (lower is better)
Translates to: KGVENGVRSDSLLPSSSSLLSLS*PLLEDT
Trigger: AGTGTCCTCAAGAAGTGGCAAGGAGAGACTCAGGAG...GGAGGAGCTAGAGGGTAGAAGGCTGTCACTCCTCACCCCATTCTCTACACCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR CAA 90 bp AGAAAGGGCAAGCTAGAACTGGTTGGTGGGTTGATGGGAGGAAAGAGCTTCTTGGAAGTATCCCACATGTaGAGCTCAATGCGGCGCTTG +
Preference number: 5 (lower is better)
Translates to: RKGKLELVGGLMGGKSFLEVSHM*SSMRRL
Trigger: CAAGCGCCGCATTGAGCTCAACATGTGGGATACTTC...CAAGAAGCTCTTTCCTCCCATCAACCCACCAACCAGTTCTAGCTTGCCCTTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR CAA 90 bp TGGGATATGGGGACCAGGGTATGCAAGGAAGTTACACTTTACATAGGAGACTCAGGGATGAGTCTCTGCTaGGATAGCTCCCTCAGTGTG +
Preference number: 5 (lower is better)
Translates to: WDMGTRVCKEVTLYIGDSGMSLC*DSSLSV
Trigger: CACACTGAGGGAGCTATCCAAGCAGAGACTCATCCC...TGAGTCTCCTATGTAAAGTGTAACTTCCTTGCATACCCTGGTCCCCATATCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR CAA 90 bp GTATGCAAGGAAGTTACACTTTACATAGGAGACTCAACCAAAGTCATTGCTTGGTGGCCGTCCCGACAGTaGAGTGGATCGCTGCAGTCC +
Preference number: 5 (lower is better)
Translates to: VCKEVTLYIGDSTKVIAWWPSRQ*SGSLQS
Trigger: GGACTGCAGCGATCCACTCAACTGTCGGGACGGCCA...CCAAGCAATGACTTTGGTTGAGTCTCCTATGTAAAGTGTAACTTCCTTGCATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR CAA 90 bp AGAAAGGGCAAGCTAGAACTGGTTGGTGGGTTGATGGGAGGAAAGAGCTTCTTGATGAGGTTACAGCTCTaGGCTCGATCCTTATGCATC +
Preference number: 5 (lower is better)
Translates to: RKGKLELVGGLMGGKSFLMRLQL*ARSLCI
Trigger: GATGCATAAGGATCGAGCCAAGAGCTGTAACCTCAT...CAAGAAGCTCTTTCCTCCCATCAACCCACCAACCAGTTCTAGCTTGCCCTTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS-3UTR CAA 90 bp AGGGTATGCAAGGAAGTTACACTTTACATAGGAGACTCAACCAAAGTCATTGCTAGCTCAATGCGGCGCTaGTCGATCTCGAAGCTGGCA +
Preference number: 5 (lower is better)
Translates to: RVCKEVTLYIGDSTKVIASSMRR*SISKLA
Trigger: TGCCAGCTTCGAGATCGACAAGCGCCGCATTGAGCT...AGCAATGACTTTGGTTGAGTCTCCTATGTAAAGTGTAACTTCCTTGCATACCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS GCA 72 bp CGCTGCAGTCCCCGGCGAGAGTCAGTACGACGTAGCTaGCTATGGCCACGGCCGAGAGAAGCCACTGTGGCC +
Preference number: 6 (lower is better)
Translates to: RCSPRRESVRRS*LWPRPREATVA
Trigger: GGCCACAGTGGCTTCTCTCGGCCGTGGCCATAGGCAGCTACGTCGTACTGACTCTCGCCGGGGACTGCAGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS CAA 72 bp CTCGCCCTCATTTCCCCGGTCTGGCCGTCCCGACAGTaGAGTGGATCGCTGCAGTCCCCGGCGAGAGTCAGT +
Preference number: 6 (lower is better)
Translates to: LALISPVWPSRQ*SGSLQSPARVS
Trigger: ACTGACTCTCGCCGGGGACTGCAGCGATCCACTCAACTGTCGGGACGGCCAGACCGGGGAAATGAGGGCGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS TCA 72 bp TCGCCCTCATTTCCCCGGTCTGGCCGTCCCGACAGTTaGGTGGATCGCTGCAGTCCCCGGCGAGAGTCAGTA +
Preference number: 6 (lower is better)
Translates to: SPSFPRSGRPDS*VDRCSPRRESV
Trigger: TACTGACTCTCGCCGGGGACTGCAGCGATCCACTCAACTGTCGGGACGGCCAGACCGGGGAAATGAGGGCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS CCA 72 bp AGTCCCCGGCGAGAGTCAGTACGACGTAGCTGCCTATaGCCACGGCCGAGAGAAGCCACTGTGGCCACATGG +
Preference number: 6 (lower is better)
Translates to: SPRRESVRRSCL*PRPREATVATW
Trigger: CCATGTGGCCACAGTGGCTTCTCTCGGCCGTGGCCATAGGCAGCTACGTCGTACTGACTCTCGCCGGGGACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS CCA 72 bp CCTCATTTCCCCGGTCTGGCCGTCCCGACAGTTGAGTaGATCGCTGCAGTCCCCGGCGAGAGTCAGTACGAC +
Preference number: 6 (lower is better)
Translates to: PHFPGLAVPTVE*IAAVPGESQYD
Trigger: GTCGTACTGACTCTCGCCGGGGACTGCAGCGATCCACTCAACTGTCGGGACGGCCAGACCGGGGAAATGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS CCA 72 bp ACACCGTGGGGACATAACTCCCGGGGTAGGCGTCCTTaGCGAACACCTGCAGCAACGCTGTCTTGCCGCACT +
Preference number: 6 (lower is better)
Translates to: TPWGHNSRGRRP*RTPAATLSCRT
Trigger: AGTGCGGCAAGACAGCGTTGCTGCAGGTGTTCGCCAAGGACGCCTACCCCGGGAGTTATGTCCCCACGGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS CCA 72 bp GTAGCTGCCTATGGCCACGGCCGAGAGAAGCCACTGTaGCCACATGGAAGACATCCCGGACACTGCGCTCAG +
Preference number: 6 (lower is better)
Translates to: VAAYGHGREKPL*PHGRHPGHCAQ
Trigger: CTGAGCGCAGTGTCCGGGATGTCTTCCATGTGGCCACAGTGGCTTCTCTCGGCCGTGGCCATAGGCAGCTAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS CCA 72 bp TCGATCCTTATGCATCTCGCCCTCATTTCCCCGGTCTaGCCGTCCCGACAGTTGAGTGGATCGCTGCAGTCC +
Preference number: 6 (lower is better)
Translates to: SILMHLALISPV*PSRQLSGSLQS
Trigger: GGACTGCAGCGATCCACTCAACTGTCGGGACGGCCAGACCGGGGAAATGAGGGCGAGATGCATAAGGATCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS CCA 72 bp TCCGCATGTCCAGCTTACAGCCAACCAGCACCACCTTaGCATTGGGGCAAAACTCCTGAGTCTCTCCTTGCC +
Preference number: 6 (lower is better)
Translates to: SACPAYSQPAPP*HWGKTPESLLA
Trigger: GGCAAGGAGAGACTCAGGAGTTTTGCCCCAATGCCAAGGTGGTGCTGGTTGGCTGTAAGCTGGACATGCGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS TCA 72 bp CCAACCAGCACCACCTTGGCATTGGGGCAAAACTCCTaGGTCTCTCCTTGCCACTTCTTGAGGACACTGTCC +
Preference number: 6 (lower is better)
Translates to: PTSTTLALGQNS*VSPCHFLRTLS
Trigger: GGACAGTGTCCTCAAGAAGTGGCAAGGAGAGACTCAGGAGTTTTGCCCCAATGCCAAGGTGGTGCTGGTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS GCA 72 bp AAGCCACTGTGGCCACATGGAAGACATCCCGGACACTaGGCTCAGAAGATCGGGAGGAACATTCAACGTAGG +
Preference number: 6 (lower is better)
Translates to: KPLWPHGRHPGH*AQKIGRNIQRR
Trigger: CCTACGTTGAATGTTCCTCCCGATCTTCTGAGCGCAGTGTCCGGGATGTCTTCCATGTGGCCACAGTGGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS CAA 72 bp TCGGGAGGAACATTCAACGTAGGACACAGCTCCCACTaGCTTGGCCAGCACAGTACCCTGCTCATGTGTGAC +
Preference number: 6 (lower is better)
Translates to: SGGTFNVGHSSH*LGQHSTLLMCD
Trigger: GTCACACATGAGCAGGGTACTGTGCTGGCCAAGCAAGTGGGAGCTGTGTCCTACGTTGAATGTTCCTCCCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS CAA 90 bp CTCAGAAGATCGGGAGGAACATTCAACGTAGGACACAGCTCCCACTaGCTTGGCCAGCACAGTACCCTGCTCATGTGTGACAGGGATGAG +
Preference number: 6 (lower is better)
Translates to: LRRSGGTFNVGHSSH*LGQHSTLLMCDRDE
Trigger: CTCATCCCTGTCACACATGAGCAGGGTACTGTGCTGGCCAAGCAAGTGGGAGCTGTGTCCTACGTTGAATGTTCCTCCCGATCTTCTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS CCA 72 bp TGTCCAGCTTACAGCCAACCAGCACCACCTTGGCATTaGGGCAAAACTCCTGAGTCTCTCCTTGCCACTTCT +
Preference number: 6 (lower is better)
Translates to: CPAYSQPAPPWH*GKTPESLLATS
Trigger: AGAAGTGGCAAGGAGAGACTCAGGAGTTTTGCCCCAATGCCAAGGTGGTGCTGGTTGGCTGTAAGCTGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS TCA 72 bp TGTCATAGTAAGAGGAACCTGAAGTATCCCACATGTTaGGCTCAATGCGGCGCTTGTCGATCTCGAAGCTGG +
Preference number: 6 (lower is better)
Translates to: CHSKRNLKYPTC*AQCGACRSRSW
Trigger: CCAGCTTCGAGATCGACAAGCGCCGCATTGAGCTCAACATGTGGGATACTTCAGGTTCCTCTTACTATGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7
CDS CCA 72 bp TCCTTGCCACTTCTTGAGGACACTGTCCAGTGTTTCTaGCCGGCTAATGTCAAAGCAGATAAGCACAGCATC +
Preference number: 6 (lower is better)
Translates to: SLPLLEDTVQCF*PANVKADKHSI
Trigger: GATGCTGTGCTTATCTGCTTTGACATTAGCCGGCCAGAAACACTGGACAGTGTCCTCAAGAAGTGGCAAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001347.7