Pregenerated sensors for RND1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054855Ensembl transcript IDs: ENSMUST00000003451.11, ENSMUST00000109149.9, ENSMUST00000120997.2
Found 98 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AATGAGGGTTCCCTCTTAGGTCAGCCCTCGCCCTCCTGGTTTCAGTaGTGGAGCGTCTGGGTTAAGCCCCGAAGGGAGCTGTCTCCAGCC | + |
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Preference number: 1 (lower is better) Translates to: NEGSLLGQPSPSWFQ*WSVWVKPRRELSPA Trigger: GGCTGGAGACAGCTCCCTTCGGGGCTTAACCCAGACGCTCCATCACTGAAACCAGGAGGGCGAGGGCTGACCTAAGAGGGAACCCTCATT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR CCA 90 bp | CCTGACGAGAAGGAAGCCCTACTCCAGGGCCAAGGACCTCTTTCTTaGCTTAGCAGGATGCAGGTGGGATTCAGAGAAGTAGAACAAGAT | + |
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Preference number: 1 (lower is better) Translates to: PDEKEALLQGQGPLS*LSRMQVGFREVEQD Trigger: ATCTTGTTCTACTTCTCTGAATCCCACCTGCATCCTGCTAAGCCAAGAAAGAGGTCCTTGGCCCTGGAGTAGGGCTTCCTTCTCGTCAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR TCA 90 bp | GAATGTATAATATCACCTCTCCATGATGCATGGGTTAGGCAAAAATaGGGGTTCCCTCTTAGGTCAGCCCTCGCCCTCCTGGTTTCAGTG | + |
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Preference number: 1 (lower is better) Translates to: ECIISPLHDAWVRQK*GFPLRSALALLVSV Trigger: CACTGAAACCAGGAGGGCGAGGGCTGACCTAAGAGGGAACCCTCATTTTTGCCTAACCCATGCATCATGGAGAGGTGATATTATACATTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR GCA 90 bp | CCCCTCAAGTATCTTACTATTTATTCAACATTCCTCATGGGACCTTaGTTCCTCGTTTCCCTGGTCTTCAGGAACTGCCCACTTGGGCTA | + |
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Preference number: 1 (lower is better) Translates to: PLKYLTIYSTFLMGP*FLVSLVFRNCPLGL Trigger: TAGCCCAAGTGGGCAGTTCCTGAAGACCAGGGAAACGAGGAAGCAAGGTCCCATGAGGAATGTTGAATAAATAGTAAGATACTTGAGGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
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| 3UTR GCA 90 bp | ACTCAGCAATATCTAGAGACATTTTTGGCTGTGACAATTGAAACATaGTACTCTTATCTAGAACCGGGATGTCAGGGCATCATACCCTAC | + |
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Preference number: 1 (lower is better) Translates to: TQQYLETFLAVTIET*YSYLEPGCQGIIPY Trigger: GTAGGGTATGATGCCCTGACATCCCGGTTCTAGATAAGAGTAGCATGTTTCAATTGTCACAGCCAAAAATGTCTCTAGATATTGCTGAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR-3UTR GCA 90 bp | GCCCTACTCCAGGGCCAAGGACCTCTTTCTTGGCTTAGCAGGATGCAGGTGGGACCCTCCCATCAGTCCTaGCCCCACAGCACCACCACC | + |
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Preference number: 2 (lower is better) Translates to: ALLQGQGPLSWLSRMQVGPSHQS*PHSTTT Trigger: GGTGGTGGTGCTGTGGGGGCAGGACTGATGGGAGGG...TCCCACCTGCATCCTGCTAAGCCAAGAAAGAGGTCCTTGGCCCTGGAGTAGGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR-3UTR CCA 90 bp | TCTGGGTTAAGCCCCGAAGGGAGCTGTCTCCAGCCTTTCACGGTCTCCAGTCCAGGAGTAGGGGGACACTaGGGCAACGACCCCCTCCAC | + |
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Preference number: 2 (lower is better) Translates to: SGLSPEGSCLQPFTVSSPGVGGH*GNDPLH Trigger: GTGGAGGGGGTCGTTGCCCCAGTGTCCCCCTACTCC...TGGACTGGAGACCGTGAAAGGCTGGAGACAGCTCCCTTCGGGGCTTAACCCAGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR-3UTR GCA 90 bp | TCTGGGTTAAGCCCCGAAGGGAGCTGTCTCCAGCCTTTCACGGTCTCCAGTCCACTCTCCCCGTGCCTCTaGACCCCAAGGGAGGAAGTG | + |
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Preference number: 2 (lower is better) Translates to: SGLSPEGSCLQPFTVSSPLSPCL*TPREEV Trigger: CACTTCCTCCCTTGGGGTGCAGAGGCACGGGGAGAG...TGGACTGGAGACCGTGAAAGGCTGGAGACAGCTCCCTTCGGGGCTTAACCCAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR-3UTR CCA 90 bp | GCCCTACTCCAGGGCCAAGGACCTCTTTCTTGGCTTAGCAGGATGCAGGTGGGACAAGAGAAGGGGGTCTaGGGCTTCTCCCTTGGGCCC | + |
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Preference number: 2 (lower is better) Translates to: ALLQGQGPLSWLSRMQVGQEKGV*GFSLGP Trigger: GGGCCCAAGGGAGAAGCCCCAGACCCCCTTCTCTTG...TCCCACCTGCATCCTGCTAAGCCAAGAAAGAGGTCCTTGGCCCTGGAGTAGGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR-3UTR TCA 90 bp | GCCCTACTCCAGGGCCAAGGACCTCTTTCTTGGCTTAGCAGGATGCAGGTGGGACCCTCCTGGTTTCAGTaGTGGAGCGTCTGGGTTAAG | + |
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Preference number: 2 (lower is better) Translates to: ALLQGQGPLSWLSRMQVGPSWFQ*WSVWVK Trigger: CTTAACCCAGACGCTCCATCACTGAAACCAGGAGGG...TCCCACCTGCATCCTGCTAAGCCAAGAAAGAGGTCCTTGGCCCTGGAGTAGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR-3UTR CCA 90 bp | GCCTGCCTGGAAACGCTGTATGGAAAAGGCGTGATGTCGAAGGTGAGGCCAGCATACCCATCCTTCCTCTaGAGTAGGGGGACACTGGGG | + |
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Preference number: 2 (lower is better) Translates to: ACLETLYGKGVMSKVRPAYPSFL*SRGTLG Trigger: CCCCAGTGTCCCCCTACTCCAGAGGAAGGATGGGTA...TGCTGGCCTCACCTTCGACATCACGCCTTTTCCATACAGCGTTTCCAGGCAGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR-3UTR GCA 90 bp | AGGACAGCCCCTTATAAACCACCATTCTCACTTCCACAGTATCAGCAGCCTGACTCCTCCCTCTCCCCGTaGCTCTGCACCCCAAGGGAG | + |
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Preference number: 2 (lower is better) Translates to: RTAPYKPPFSLPQYQQPDSSLSP*LCTPRE Trigger: CTCCCTTGGGGTGCAGAGGCACGGGGAGAGGGAGGA...GTCAGGCTGCTGATACTGTGGAAGTGAGAATGGTGGTTTATAAGGGGCTGTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR-3UTR CCA 90 bp | CACTTCTTTAAGGAGAAGAGAAGGGATCAAGGACCCCGCCCACCCCAAGCCTGCCCCTCCTGCCAAGCCTaGCATCTTCTTCAGTTCCAT | + |
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Preference number: 2 (lower is better) Translates to: HFFKEKRRDQGPRPPQACPSCQA*HLLQFH Trigger: ATGGAACTGAAGAAGATGCCAGGCTTGGCAGGAGGG...GCAGGCTTGGGGTGGGCGGGGTCCTTGATCCCTTCTCTTCTCCTTAAAGAAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR-3UTR TCA 90 bp | AACGACCCCCTCCACAGCCTAGTGCCAGGCTTGGGGTGTGATGGTTTCTGCTTATCCTCTGTGGCCATCTaGAAAATGTCACATCCGGTG | + |
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Preference number: 2 (lower is better) Translates to: NDPLHSLVPGLGCDGFCLSSVAI*KMSHPV Trigger: CACCGGATGTGACATTTTTCAGATGGCCACAGAGGA...TAAGCAGAAACCATCACACCCCAAGCCTGGCACTAGGCTGTGGAGGGGGTCGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR-3UTR GCA 90 bp | CTAGAAAGGGATCCAAGACAGCTTTTCCGCCGGGGTGTGGTGGTCCATGCCTTTAATGTCAGGCCCTCCTaGCAAGCCTGGCATCTTCTT | + |
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Preference number: 2 (lower is better) Translates to: LERDPRQLFRRGVVVHAFNVRPS*QAWHLL Trigger: AAGAAGATGCCAGGCTTGGCAGGAGGGCCTGACATT...AAAGGCATGGACCACCACACCCCGGCGGAAAAGCTGTCTTGGATCCCTTTCTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR-3UTR CCA 90 bp | ACTCCAGTCACAGGAGTAACCTTGGGGCCCCGGCAGGATGAATGCCTGAACAACTTTCAGAGGTTTCCCTaGAAGGACTTCCCCCTCAAG | + |
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Preference number: 2 (lower is better) Translates to: TPVTGVTLGPRQDECLNNFQRFP*KDFPLK Trigger: CTTGAGGGGGAAGTCCTTCCAGGGAAACCTCTGAAA...GTTGTTCAGGCATTCATCCTGCCGGGGCCCCAAGGTTACTCCTGTGACTGGAGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
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| 3UTR-3UTR GCA 90 bp | CTAGAAAGGGATCCAAGACAGCTTTTCCGCCGGGGTGTGGTGGTCCATGCCTTTCGGTCTCCAGTCCATTaGCACTTCTTTAAGGAGAAG | + |
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Preference number: 2 (lower is better) Translates to: LERDPRQLFRRGVVVHAFRSPVH*HFFKEK Trigger: CTTCTCCTTAAAGAAGTGGCAATGGACTGGAGACCG...AAAGGCATGGACCACCACACCCCGGCGGAAAAGCTGTCTTGGATCCCTTTCTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR CAA 90 bp | CCCCCTCAAGTATCTTACTATTTATTCAACATTCCTCATGGGACCTaGCTTCCTCGTTTCCCTGGTCTTCAGGAACTGCCCACTTGGGCT | + |
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Preference number: 2 (lower is better) Translates to: PPQVSYYLFNIPHGT*LPRFPGLQELPTWA Trigger: AGCCCAAGTGGGCAGTTCCTGAAGACCAGGGAAACGAGGAAGCAAGGTCCCATGAGGAATGTTGAATAAATAGTAAGATACTTGAGGGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
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| 3UTR-3UTR TCA 90 bp | CAGGAAGTGATTTTATCCAGAGGACACTCAGCAATATCTAGAGACATTTTTGGCGCCAGGCTTGGGGTGTaGTGGTTTCTGCTTAATGTC | + |
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Preference number: 2 (lower is better) Translates to: QEVILSRGHSAISRDIFGARLGV*WFLLNV Trigger: GACATTAAGCAGAAACCATCACACCCCAAGCCTGGC...GCCAAAAATGTCTCTAGATATTGCTGAGTGTCCTCTGGATAAAATCACTTCCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR TCA 72 bp | TCCCTCTTAGGTCAGCCCTCGCCCTCCTGGTTTCAGTaGTGGAGCGTCTGGGTTAAGCCCCGAAGGGAGCTG | + |
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Preference number: 3 (lower is better) Translates to: SLLGQPSPSWFQ*WSVWVKPRREL Trigger: CAGCTCCCTTCGGGGCTTAACCCAGACGCTCCATCACTGAAACCAGGAGGGCGAGGGCTGACCTAAGAGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR TCA 72 bp | ATATCACCTCTCCATGATGCATGGGTTAGGCAAAAATaGGGGTTCCCTCTTAGGTCAGCCCTCGCCCTCCTG | + |
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Preference number: 3 (lower is better) Translates to: ISPLHDAWVRQK*GFPLRSALALL Trigger: CAGGAGGGCGAGGGCTGACCTAAGAGGGAACCCTCATTTTTGCCTAACCCATGCATCATGGAGAGGTGATAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR GCA 72 bp | GGAGCTGTCTCCAGCCTTTCACGGTCTCCAGTCCATTaGCACTTCTTTAAGGAGAAGAGAAGGGATCAAGGA | + |
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Preference number: 3 (lower is better) Translates to: GAVSSLSRSPVH*HFFKEKRRDQG Trigger: TCCTTGATCCCTTCTCTTCTCCTTAAAGAAGTGGCAATGGACTGGAGACCGTGAAAGGCTGGAGACAGCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR GCA 72 bp | TATCTTACTATTTATTCAACATTCCTCATGGGACCTTaGTTCCTCGTTTCCCTGGTCTTCAGGAACTGCCCA | + |
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Preference number: 3 (lower is better) Translates to: YLTIYSTFLMGP*FLVSLVFRNCP Trigger: TGGGCAGTTCCTGAAGACCAGGGAAACGAGGAAGCAAGGTCCCATGAGGAATGTTGAATAAATAGTAAGATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
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| 3UTR GCA 72 bp | TATCTAGAGACATTTTTGGCTGTGACAATTGAAACATaGTACTCTTATCTAGAACCGGGATGTCAGGGCATC | + |
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Preference number: 3 (lower is better) Translates to: YLETFLAVTIET*YSYLEPGCQGI Trigger: GATGCCCTGACATCCCGGTTCTAGATAAGAGTAGCATGTTTCAATTGTCACAGCCAAAAATGTCTCTAGATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| 3UTR TCA 72 bp | TCAGCAATATCTAGAGACATTTTTGGCTGTGACAATTaGAACATGCTACTCTTATCTAGAACCGGGATGTCA | + |
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Preference number: 3 (lower is better) Translates to: SAISRDIFGCDN*NMLLLSRTGMS Trigger: TGACATCCCGGTTCTAGATAAGAGTAGCATGTTTCAATTGTCACAGCCAAAAATGTCTCTAGATATTGCTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS-3UTR GCA 90 bp | TCTGGGTTAAGCCCCGAAGGGAGCTGTCTCCAGCCTTTCACGGTCTCCAGTCCAGCCGTCTTCCCACACTaGACGTCTCCCACCAGGACG | + |
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Preference number: 4 (lower is better) Translates to: SGLSPEGSCLQPFTVSSPAVFPH*TSPTRT Trigger: CGTCCTGGTGGGAGACGTGCAGTGTGGGAAGACGGC...TGGACTGGAGACCGTGAAAGGCTGGAGACAGCTCCCTTCGGGGCTTAACCCAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS-3UTR GCA 90 bp | ACTCCAGTCACAGGAGTAACCTTGGGGCCCCGGCAGGATGAATGCCTGAACAACCTGACCACCACTGGCTaGGGTGCCCGTCTCTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: TPVTGVTLGPRQDECLNNLTTTG*GARLSF Trigger: GAAGGAGAGACGGGCACCGCAGCCAGTGGTGGTCAG...GTTGTTCAGGCATTCATCCTGCCGGGGCCCCAAGGTTACTCCTGTGACTGGAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
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| CDS-3UTR CCA 90 bp | CACTTCTTTAAGGAGAAGAGAAGGGATCAAGGACCCCGCCCACCCCAAGCCTGCACACCTGACCACCACTaGCTGCGGTGCCCGTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: HFFKEKRRDQGPRPPQACTPDHH*LRCPSL Trigger: GAGAGACGGGCACCGCAGCCAGTGGTGGTCAGGTGT...GCAGGCTTGGGGTGGGCGGGGTCCTTGATCCCTTCTCTTCTCCTTAAAGAAGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS-3UTR CCA 90 bp | AACGACCCCCTCCACAGCCTAGTGCCAGGCTTGGGGTGTGATGGTTTCTGCTTAGGTGGAGGAGTCGCTTaGAAAGGCTTCGGACGGGGC | + |
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Preference number: 4 (lower is better) Translates to: NDPLHSLVPGLGCDGFCLGGGVA*KGFGRG Trigger: GCCCCGTCCGAAGCCTTTCCAAGCGACTCCTCCACC...TAAGCAGAAACCATCACACCCCAAGCCTGGCACTAGGCTGTGGAGGGGGTCGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS-3UTR GCA 90 bp | GGACCTTGCTTCCTCGTTTCCCTGGTCTTCAGGAACTGCCCACTTGGGCTACTTGCCGTCTTCCCACACTaGACGTCTCCCACCAGGACG | + |
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Preference number: 4 (lower is better) Translates to: GPCFLVSLVFRNCPLGLLAVFPH*TSPTRT Trigger: CGTCCTGGTGGGAGACGTGCAGTGTGGGAAGACGGC...AAGTAGCCCAAGTGGGCAGTTCCTGAAGACCAGGGAAACGAGGAAGCAAGGTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
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| CDS-3UTR CCA 90 bp | TTCCACAGTATCAGCAGCCTGACGAGAAGGAAGCCCTACTCCAGGGCCAAGGACGAGCGACTGGGGAGGTaGAGGAGTCGCTTGGAAAGG | + |
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Preference number: 4 (lower is better) Translates to: FHSISSLTRRKPYSRAKDERLGR*RSRLER Trigger: CCTTTCCAAGCGACTCCTCCACCTCCCCAGTCGCTC...GTCCTTGGCCCTGGAGTAGGGCTTCCTTCTCGTCAGGCTGCTGATACTGTGGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS-3UTR TCA 90 bp | TCTGGGTTAAGCCCCGAAGGGAGCTGTCTCCAGCCTTTCACGGTCTCCAGTCCACAGCAATACCGCATCTaGGTCGCTGTAGCAGAGTGG | + |
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Preference number: 4 (lower is better) Translates to: SGLSPEGSCLQPFTVSSPQQYRI*VAVAEW Trigger: CCACTCTGCTACAGCGACTCAGATGCGGTATTGCTG...TGGACTGGAGACCGTGAAAGGCTGGAGACAGCTCCCTTCGGGGCTTAACCCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS-3UTR CCA 90 bp | TCTGGGTTAAGCCCCGAAGGGAGCTGTCTCCAGCCTTTCACGGTCTCCAGTCCAGCTCTTCGGGGGCACTaGGCTAGACTTGTTCAGACA | + |
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Preference number: 4 (lower is better) Translates to: SGLSPEGSCLQPFTVSSPALRGH*ARLVQT Trigger: TGTCTGAACAAGTCTAGCCCAGTGCCCCCGAAGAGC...TGGACTGGAGACCGTGAAAGGCTGGAGACAGCTCCCTTCGGGGCTTAACCCAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS-3UTR CCA 90 bp | TCTGGGTTAAGCCCCGAAGGGAGCTGTCTCCAGCCTTTCACGGTCTCCAGTCCAGGTGCCTGCTTCTGGTaGGACAGTTCCATTAGAGTG | + |
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Preference number: 4 (lower is better) Translates to: SGLSPEGSCLQPFTVSSPGACFW*DSSIRV Trigger: CACTCTAATGGAACTGTCCCACCAGAAGCAGGCACC...TGGACTGGAGACCGTGAAAGGCTGGAGACAGCTCCCTTCGGGGCTTAACCCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS-3UTR CCA 90 bp | AGGCGTGATGTCGAAGGTGAGGCCAGCATGTCCCCATCTCCCCAGTACCCATCCATGGGTGCCTGCTTCTaGTGGGACAGTTCCATTAGA | + |
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Preference number: 4 (lower is better) Translates to: RRDVEGEASMSPSPQYPSMGACF*WDSSIR Trigger: TCTAATGGAACTGTCCCACCAGAAGCAGGCACCCAT...GGATGGGTACTGGGGAGATGGGGACATGCTGGCCTCACCTTCGACATCACGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS-3UTR TCA 90 bp | TGGCCATCTGAAAAATGTCACATCCGGTGTCTTAAGCCGTCTCATCCTCCCTCTGGACGAGCTTACACCTaGCCACCACTGGCTGCGGTG | + |
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Preference number: 4 (lower is better) Translates to: WPSEKCHIRCLKPSHPPSGRAYT*PPLAAV Trigger: CACCGCAGCCAGTGGTGGTCAGGTGTAAGCTCGTCC...AGAGGGAGGATGAGACGGCTTAAGACACCGGATGTGACATTTTTCAGATGGCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS-3UTR CCA 90 bp | GAATGCCTGAACAACCCCAGGGTACCCACTGTCCCCCTACTCCCAATAAATAATACACCTGACCACCACTaGCTGCGGTGCCCGTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: ECLNNPRVPTVPLLPINNTPDHH*LRCPSL Trigger: GAGAGACGGGCACCGCAGCCAGTGGTGGTCAGGTGT...ATTATTTATTGGGAGTAGGGGGACAGTGGGTACCCTGGGGTTGTTCAGGCATTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
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| CDS-3UTR TCA 90 bp | GCCTGCCTGGAAACGCTGTATGGAAAAGGCGTGATGTCGAAGGTGAGGCCAGCATGGTCTCTGGACGGCTaGTGTCAAAGCACAGCAATA | + |
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Preference number: 4 (lower is better) Translates to: ACLETLYGKGVMSKVRPAWSLDG*CQSTAI Trigger: TATTGCTGTGCTTTGACATCAGCCGTCCAGAGACCA...TGCTGGCCTCACCTTCGACATCACGCCTTTTCCATACAGCGTTTCCAGGCAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS-3UTR TCA 90 bp | CCTCATGGGACCTTGCTTCCTCGTTTCCCTGGTCTTCAGGAACTGCCCACTTGGTGGTCTCTGGACGGCTaGTGTCAAAGCACAGCAATA | + |
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Preference number: 4 (lower is better) Translates to: PHGTLLPRFPGLQELPTWWSLDG*CQSTAI Trigger: TATTGCTGTGCTTTGACATCAGCCGTCCAGAGACCA...CCAAGTGGGCAGTTCCTGAAGACCAGGGAAACGAGGAAGCAAGGTCCCATGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
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| CDS-3UTR GCA 90 bp | GCCTGCCTGGAAACGCTGTATGGAAAAGGCGTGATGTCGAAGGTGAGGCCAGCACTCCAGGTAGATTTCTaGGCCCAACTGCTTGGCTAT | + |
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Preference number: 4 (lower is better) Translates to: ACLETLYGKGVMSKVRPALQVDF*AQLLGY Trigger: ATAGCCAAGCAGTTGGGCGCAGAAATCTACCTGGAG...TGCTGGCCTCACCTTCGACATCACGCCTTTTCCATACAGCGTTTCCAGGCAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS-3UTR CCA 90 bp | ACTCCAGTCACAGGAGTAACCTTGGGGCCCCGGCAGGATGAATGCCTGAACAACATGGGTGCCTGCTTCTaGTGGGACAGTTCCATTAGA | + |
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Preference number: 4 (lower is better) Translates to: TPVTGVTLGPRQDECLNNMGACF*WDSSIR Trigger: TCTAATGGAACTGTCCCACCAGAAGCAGGCACCCAT...GTTGTTCAGGCATTCATCCTGCCGGGGCCCCAAGGTTACTCCTGTGACTGGAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
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| CDS-3UTR CCA 90 bp | TCTGGGTTAAGCCCCGAAGGGAGCTGTCTCCAGCCTTTCACGGTCTCCAGTCCATGTTCAGACACACCATaGATGCTGTCCGGAAAATGC | + |
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Preference number: 4 (lower is better) Translates to: SGLSPEGSCLQPFTVSSPCSDTP*MLSGKC Trigger: GCATTTTCCGGACAGCATCCATGGTGTGTCTGAACA...TGGACTGGAGACCGTGAAAGGCTGGAGACAGCTCCCTTCGGGGCTTAACCCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS-3UTR CCA 90 bp | CCAGTCACAGGAGTAACCTTGGGGCCCCGGCAGGATGAATGCCTGAACAACCCCCCACTTCCTTTCTCTTaGGTTCAAACAGTACCGTCA | + |
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Preference number: 4 (lower is better) Translates to: PVTGVTLGPRQDECLNNPPLPFS*VQTVPS Trigger: TGACGGTACTGTTTGAACCCAAGAGAAAGGAAGTGG...GGGGTTGTTCAGGCATTCATCCTGCCGGGGCCCCAAGGTTACTCCTGTGACTGG 54% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
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| CDS-3UTR TCA 90 bp | AGGCGTGATGTCGAAGGTGAGGCCAGCATGTCCCCATCTCCCCAGTACCCATCCCTTCTTGAATGTAGTTaGGATGAGTTCAGAGCGACT | + |
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Preference number: 4 (lower is better) Translates to: RRDVEGEASMSPSPQYPSLLECS*DEFRAT Trigger: AGTCGCTCTGAACTCATCTCAACTACATTCAAGAAG...GGATGGGTACTGGGGAGATGGGGACATGCTGGCCTCACCTTCGACATCACGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS-3UTR GCA 90 bp | TGGCCATCTGAAAAATGTCACATCCGGTGTCTTAAGCCGTCTCATCCTCCCTCTCTCGTAGGAGATGGGTaGCTGCTTCTGGTGGGACAG | + |
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Preference number: 4 (lower is better) Translates to: WPSEKCHIRCLKPSHPPSLVGDG*LLLVGQ Trigger: CTGTCCCACCAGAAGCAGGCACCCATCTCCTACGAG...AGAGGGAGGATGAGACGGCTTAAGACACCGGATGTGACATTTTTCAGATGGCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS-3UTR GCA 90 bp | ATTTTATCTTGCCATAGCCTTTTCTATCCCACCTGTGCACACATGCCCGTGCCCCTCGTAGGAGATGGGTaGCTGCTTCTGGTGGGACAG | + |
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Preference number: 4 (lower is better) Translates to: ILSCHSLFYPTCAHMPVPLVGDG*LLLVGQ Trigger: CTGTCCCACCAGAAGCAGGCACCCATCTCCTACGAG...GGGCACGGGCATGTGTGCACAGGTGGGATAGAAAAGGCTATGGCAAGATAAAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000120997.2 |
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| CDS-3UTR CCA 90 bp | GCCCTACTCCAGGGCCAAGGACCTCTTTCTTGGCTTAGCAGGATGCAGGTGGGAGTCGCTGTAGCAGAGTaGACGAACATTGTCATAGTA | + |
|
Preference number: 4 (lower is better) Translates to: ALLQGQGPLSWLSRMQVGVAVAE*TNIVIV Trigger: TACTATGACAATGTTCGTCCACTCTGCTACAGCGAC...TCCCACCTGCATCCTGCTAAGCCAAGAAAGAGGTCCTTGGCCCTGGAGTAGGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
||
| CDS-3UTR TCA 90 bp | CCCACTGTCCCCCTACTCCCAATAAATAATAAACTAACATTTCAGAGGTTTCCCGGACGAGCTTACACCTaGCCACCACTGGCTGCGGTG | + |
|
Preference number: 4 (lower is better) Translates to: PTVPLLPINNKLTFQRFPGRAYT*PPLAAV Trigger: CACCGCAGCCAGTGGTGGTCAGGTGTAAGCTCGTCC...GGGAAACCTCTGAAATGTTAGTTTATTATTTATTGGGAGTAGGGGGACAGTGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
||
| CDS-3UTR TCA 90 bp | ATACTAATTTTATCTTGCCATAGCCTTTTCTATCCCACCTGTGCACACATGCCCGGACGAGCTTACACCTaGCCACCACTGGCTGCGGTG | + |
|
Preference number: 4 (lower is better) Translates to: ILILSCHSLFYPTCAHMPGRAYT*PPLAAV Trigger: CACCGCAGCCAGTGGTGGTCAGGTGTAAGCTCGTCC...GGGCATGTGTGCACAGGTGGGATAGAAAAGGCTATGGCAAGATAAAATTAGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120997.2 |
||
| CDS-3UTR GCA 90 bp | ATACTAATTTTATCTTGCCATAGCCTTTTCTATCCCACCTGTGCACACATGCCCCTGACCACCACTGGCTaGGGTGCCCGTCTCTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: ILILSCHSLFYPTCAHMPLTTTG*GARLSF Trigger: GAAGGAGAGACGGGCACCGCAGCCAGTGGTGGTCAG...GGGCATGTGTGCACAGGTGGGATAGAAAAGGCTATGGCAAGATAAAATTAGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000120997.2 |
||
| CDS-3UTR GCA 90 bp | AAGCCCTACTCCAGGGCCAAGGACCTCTTTCTTGGCTTAGCAGGATGCAGGTGGACAGTTCCATTAGAGTaGTCAGGTCTGTTCGAAGAT | + |
|
Preference number: 4 (lower is better) Translates to: KPYSRAKDLFLGLAGCRWTVPLE*SGLFED Trigger: ATCTTCGAACAGACCTGAGCACTCTAATGGAACTGT...CCACCTGCATCCTGCTAAGCCAAGAAAGAGGTCCTTGGCCCTGGAGTAGGGCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
||
| CDS-3UTR CCA 90 bp | ATACTAATTTTATCTTGCCATAGCCTTTTCTATCCCACCTGTGCACACATGCCCACACCTGACCACCACTaGCTGCGGTGCCCGTCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: ILILSCHSLFYPTCAHMPTPDHH*LRCPSL Trigger: GAGAGACGGGCACCGCAGCCAGTGGTGGTCAGGTGT...GGGCATGTGTGCACAGGTGGGATAGAAAAGGCTATGGCAAGATAAAATTAGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120997.2 |
||
| CDS-3UTR CCA 90 bp | ATTTTATCTTGCCATAGCCTTTTCTATCCCACCTGTGCACACATGCCCGTGCCCGGTGCCTGCTTCTGGTaGGACAGTTCCATTAGAGTG | + |
|
Preference number: 4 (lower is better) Translates to: ILSCHSLFYPTCAHMPVPGACFW*DSSIRV Trigger: CACTCTAATGGAACTGTCCCACCAGAAGCAGGCACC...GGGCACGGGCATGTGTGCACAGGTGGGATAGAAAAGGCTATGGCAAGATAAAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120997.2 |
||
| CDS-3UTR TCA 90 bp | TTTATTCAACATTCCTCATGGGACCTTGCTTCCTCGTTTCCCTGGTCTTCAGGACAGCAATACCGCATCTaGGTCGCTGTAGCAGAGTGG | + |
|
Preference number: 4 (lower is better) Translates to: FIQHSSWDLASSFPWSSGQQYRI*VAVAEW Trigger: CCACTCTGCTACAGCGACTCAGATGCGGTATTGCTG...TCCTGAAGACCAGGGAAACGAGGAAGCAAGGTCCCATGAGGAATGTTGAATAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
||
| CDS-3UTR TCA 90 bp | TGGCCATCTGAAAAATGTCACATCCGGTGTCTTAAGCCGTCTCATCCTCCCTCTCTGTTCTCCACTTCTTaGGTGCACTGTCCATGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: WPSEKCHIRCLKPSHPPSLFSTS*VHCPWS Trigger: AGACCATGGACAGTGCACTCAAGAAGTGGAGAACAG...AGAGGGAGGATGAGACGGCTTAAGACACCGGATGTGACATTTTTCAGATGGCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
||
| CDS-3UTR GCA 90 bp | CAGGAAGTGATTTTATCCAGAGGACACTCAGCAATATCTAGAGACATTTTTGGCCTGACCACCACTGGCTaGGGTGCCCGTCTCTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: QEVILSRGHSAISRDIFGLTTTG*GARLSF Trigger: GAAGGAGAGACGGGCACCGCAGCCAGTGGTGGTCAG...GCCAAAAATGTCTCTAGATATTGCTGAGTGTCCTCTGGATAAAATCACTTCCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
||
| CDS-3UTR GCA 90 bp | ATTTTATCTTGCCATAGCCTTTTCTATCCCACCTGTGCACACATGCCCGTGCCCTCTCCACTTCTTGAGTaGACTGTCCATGGTCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: ILSCHSLFYPTCAHMPVPSPLLE*TVHGLW Trigger: CCAGAGACCATGGACAGTGCACTCAAGAAGTGGAGA...GGGCACGGGCATGTGTGCACAGGTGGGATAGAAAAGGCTATGGCAAGATAAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120997.2 |
||
| CDS-3UTR GCA 90 bp | GGACCTTGCTTCCTCGTTTCCCTGGTCTTCAGGAACTGCCCACTTGGGCTACTTACAGTTCCATTAGAGTaGTCAGGTCTGTTCGAAGAT | + |
|
Preference number: 4 (lower is better) Translates to: GPCFLVSLVFRNCPLGLLTVPLE*SGLFED Trigger: ATCTTCGAACAGACCTGAGCACTCTAATGGAACTGT...AAGTAGCCCAAGTGGGCAGTTCCTGAAGACCAGGGAAACGAGGAAGCAAGGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
||
| CDS-3UTR GCA 90 bp | AACAACCCCAGGGTACCCACTGTCCCCCTACTCCCAATAAATAATAAACTAACACTCGTAGGAGATGGGTaGCTGCTTCTGGTGGGACAG | + |
|
Preference number: 4 (lower is better) Translates to: NNPRVPTVPLLPINNKLTLVGDG*LLLVGQ Trigger: CTGTCCCACCAGAAGCAGGCACCCATCTCCTACGAG...TGTTAGTTTATTATTTATTGGGAGTAGGGGGACAGTGGGTACCCTGGGGTTGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
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| CDS-3UTR CCA 90 bp | ATTTTATCTTGCCATAGCCTTTTCTATCCCACCTGTGCACACATGCCCGTGCCCATGGGTGCCTGCTTCTaGTGGGACAGTTCCATTAGA | + |
|
Preference number: 4 (lower is better) Translates to: ILSCHSLFYPTCAHMPVPMGACF*WDSSIR Trigger: TCTAATGGAACTGTCCCACCAGAAGCAGGCACCCAT...GGGCACGGGCATGTGTGCACAGGTGGGATAGAAAAGGCTATGGCAAGATAAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120997.2 |
||
| CDS-3UTR CCA 90 bp | AGGACAGCCCCTTATAAACCACCATTCTCACTTCCACAGTATCAGCAGCCTGACGTCCGGAAAATGCTGTaGATGCTTGTCTCGGAAGTG | + |
|
Preference number: 4 (lower is better) Translates to: RTAPYKPPFSLPQYQQPDVRKML*MLVSEV Trigger: CACTTCCGAGACAAGCATCCACAGCATTTTCCGGAC...GTCAGGCTGCTGATACTGTGGAAGTGAGAATGGTGGTTTATAAGGGGCTGTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
||
| CDS-3UTR CCA 90 bp | TTTCCCTGGAAGGACTTCCCCCTCAAGTATCTTACTATTTATTCAACATTCCTCGCTGCTCGTAGGAGATaGGTGCCTGCTTCTGGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: FPWKDFPLKYLTIYSTFLAARRR*VPASGG Trigger: CCCACCAGAAGCAGGCACCCATCTCCTACGAGCAGC...GAGGAATGTTGAATAAATAGTAAGATACTTGAGGGGGAAGTCCTTCCAGGGAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
||
| CDS-3UTR TCA 90 bp | ATACTAATTTTATCTTGCCATAGCCTTTTCTATCCCACCTGTGCACACATGCCCTGGTCTCTGGACGGCTaGTGTCAAAGCACAGCAATA | + |
|
Preference number: 4 (lower is better) Translates to: ILILSCHSLFYPTCAHMPWSLDG*CQSTAI Trigger: TATTGCTGTGCTTTGACATCAGCCGTCCAGAGACCA...GGGCATGTGTGCACAGGTGGGATAGAAAAGGCTATGGCAAGATAAAATTAGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120997.2 |
||
| CDS-3UTR TCA 90 bp | ATACTAATTTTATCTTGCCATAGCCTTTTCTATCCCACCTGTGCACACATGCCCCTGTTCTCCACTTCTTaGGTGCACTGTCCATGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: ILILSCHSLFYPTCAHMPLFSTS*VHCPWS Trigger: AGACCATGGACAGTGCACTCAAGAAGTGGAGAACAG...GGGCATGTGTGCACAGGTGGGATAGAAAAGGCTATGGCAAGATAAAATTAGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000120997.2 |
||
| CDS-3UTR CCA 90 bp | AACATTTCAGAGGTTTCCCTGGAAGGACTTCCCCCTCAAGTATCTTACTATTTAGGTGCCTGCTTCTGGTaGGACAGTTCCATTAGAGTG | + |
|
Preference number: 4 (lower is better) Translates to: NISEVSLEGLPPQVSYYLGACFW*DSSIRV Trigger: CACTCTAATGGAACTGTCCCACCAGAAGCAGGCACC...TAAATAGTAAGATACTTGAGGGGGAAGTCCTTCCAGGGAAACCTCTGAAATGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
||
| 3UTR CAA 72 bp | GTATCTTACTATTTATTCAACATTCCTCATGGGACCTaGCTTCCTCGTTTCCCTGGTCTTCAGGAACTGCCC | + |
|
Preference number: 4 (lower is better) Translates to: VSYYLFNIPHGT*LPRFPGLQELP Trigger: GGGCAGTTCCTGAAGACCAGGGAAACGAGGAAGCAAGGTCCCATGAGGAATGTTGAATAAATAGTAAGATAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
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| CDS-3UTR TCA 90 bp | AACATTTCAGAGGTTTCCCTGGAAGGACTTCCCCCTCAAGTATCTTACTATTTACTGTTCTCCACTTCTTaGGTGCACTGTCCATGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: NISEVSLEGLPPQVSYYLLFSTS*VHCPWS Trigger: AGACCATGGACAGTGCACTCAAGAAGTGGAGAACAG...TAAATAGTAAGATACTTGAGGGGGAAGTCCTTCCAGGGAAACCTCTGAAATGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
||
| CDS-3UTR GCA 90 bp | CCAATAAATAATAAACTAACATTTCAGAGGTTTCCCTGGAAGGACTTCCCCCTCTCTCCACTTCTTGAGTaGACTGTCCATGGTCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: PINNKLTFQRFPWKDFPLSPLLE*TVHGLW Trigger: CCAGAGACCATGGACAGTGCACTCAAGAAGTGGAGA...GAGGGGGAAGTCCTTCCAGGGAAACCTCTGAAATGTTAGTTTATTATTTATTGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
||
| CDS-3UTR CCA 90 bp | AACAACCCCAGGGTACCCACTGTCCCCCTACTCCCAATAAATAATAAACTAACAGTCGCTGTAGCAGAGTaGACGAACATTGTCATAGTA | + |
|
Preference number: 4 (lower is better) Translates to: NNPRVPTVPLLPINNKLTVAVAE*TNIVIV Trigger: TACTATGACAATGTTCGTCCACTCTGCTACAGCGAC...TGTTAGTTTATTATTTATTGGGAGTAGGGGGACAGTGGGTACCCTGGGGTTGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
||
| CDS-3UTR GCA 90 bp | GAAGCATGTGAATGTATAATATCACCTCTCCATGATGCATGGGTTAGGCAAAAATCTCCACTTCTTGAGTaGACTGTCCATGGTCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: EACECIISPLHDAWVRQKSPLLE*TVHGLW Trigger: CCAGAGACCATGGACAGTGCACTCAAGAAGTGGAGA...TTTTTGCCTAACCCATGCATCATGGAGAGGTGATATTATACATTCACATGCTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS-3UTR GCA 90 bp | ATACTAATTTTATCTTGCCATAGCCTTTTCTATCCCACCTGTGCACACATGCCCACAGTTCCATTAGAGTaGTCAGGTCTGTTCGAAGAT | + |
|
Preference number: 4 (lower is better) Translates to: ILILSCHSLFYPTCAHMPTVPLE*SGLFED Trigger: ATCTTCGAACAGACCTGAGCACTCTAATGGAACTGT...GGGCATGTGTGCACAGGTGGGATAGAAAAGGCTATGGCAAGATAAAATTAGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120997.2 |
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| CDS-3UTR CAA 90 bp | GCCCTACTCCAGGGCCAAGGACCTCTTTCTTGGCTTAGCAGGATGCAGGTGGGAAGGTGGAGGAGTCGCTaGGAAAGGCTTCGGACGGGG | + |
|
Preference number: 5 (lower is better) Translates to: ALLQGQGPLSWLSRMQVGRWRSR*ERLRTG Trigger: CCCCGTCCGAAGCCTTTCCAAGCGACTCCTCCACCT...TCCCACCTGCATCCTGCTAAGCCAAGAAAGAGGTCCTTGGCCCTGGAGTAGGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS CCA 90 bp | CTGCGCCCAACTGCTTGGCTATCGCACAGCCCTGCTCGTAGGAGATaGGTGCCTGCTTCTGGTGGGACAGTTCCATTAGAGTGCTCAGGT | + |
|
Preference number: 5 (lower is better) Translates to: LRPTAWLSHSPARRR*VPASGGTVPLECSG Trigger: ACCTGAGCACTCTAATGGAACTGTCCCACCAGAAGCAGGCACCCATCTCCTACGAGCAGGGCTGTGCGATAGCCAAGCAGTTGGGCGCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
||
| CDS GCA 90 bp | GATGCTTGTCTCGGAAGTGAAAGCCGAGCCCTCCAGGTAGATTTCTaGGCCCAACTGCTTGGCTATCGCACAGCCCTGCTCGTAGGAGAT | + |
|
Preference number: 5 (lower is better) Translates to: DACLGSESRALQVDF*AQLLGYRTALLVGD Trigger: ATCTCCTACGAGCAGGGCTGTGCGATAGCCAAGCAGTTGGGCGCAGAAATCTACCTGGAGGGCTCGGCTTTCACTTCCGAGACAAGCATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS CCA 90 bp | TCTTGGGTTCAAACAGTACCGTCAGCACCCGCTGCTCGTAGGAGATaGGTGCCTGCTTCTGGTGGGACAGTTCCATTAGAGTGCTCAGGT | + |
|
Preference number: 5 (lower is better) Translates to: SWVQTVPSAPAARRR*VPASGGTVPLECSG Trigger: ACCTGAGCACTCTAATGGAACTGTCCCACCAGAAGCAGGCACCCATCTCCTACGAGCAGCGGGTGCTGACGGTACTGTTTGAACCCAAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
||
| CDS GCA 90 bp | GCTCTTCGGGGGCACTGGGCTAGACTTGTTCAGACACACCATGGATaGTGTCCGGAAAATGCTGTGGATGCTTGTCTCGGAAGTGAAAGC | + |
|
Preference number: 5 (lower is better) Translates to: ALRGHWARLVQTHHG*CPENAVDACLGSES Trigger: GCTTTCACTTCCGAGACAAGCATCCACAGCATTTTCCGGACAGCATCCATGGTGTGTCTGAACAAGTCTAGCCCAGTGCCCCCGAAGAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS CCA 90 bp | CACACACACACACACACACATGCACACACACCTGCTCGTAGGAGATaGGTGCCTGCTTCTGGTGGGACAGTTCCATTAGAGTGCTCAGGT | + |
|
Preference number: 5 (lower is better) Translates to: HTHTHTHAHTPARRR*VPASGGTVPLECSG Trigger: ACCTGAGCACTCTAATGGAACTGTCCCACCAGAAGCAGGCACCCATCTCCTACGAGCAGGTGTGTGTGCATGTGTGTGTGTGTGTGTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120997.2 |
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| CDS-3UTR CAA 90 bp | ACTCCAGTCACAGGAGTAACCTTGGGGCCCCGGCAGGATGAATGCCTGAACAACTCTGTTCTCCACTTCTaGAGTGCACTGTCCATGGTC | + |
|
Preference number: 5 (lower is better) Translates to: TPVTGVTLGPRQDECLNNSVLHF*SALSMV Trigger: GACCATGGACAGTGCACTCAAGAAGTGGAGAACAGA...GTTGTTCAGGCATTCATCCTGCCGGGGCCCCAAGGTTACTCCTGTGACTGGAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
||
| CDS-3UTR CAA 90 bp | GCCCTACTCCAGGGCCAAGGACCTCTTTCTTGGCTTAGCAGGATGCAGGTGGGAGTTCGAAGATCTGTCTaGCAGCCAATAAGCAAAACA | + |
|
Preference number: 5 (lower is better) Translates to: ALLQGQGPLSWLSRMQVGVRRSV*QPISKT Trigger: TGTTTTGCTTATTGGCTGCAAGACAGATCTTCGAAC...TCCCACCTGCATCCTGCTAAGCCAAGAAAGAGGTCCTTGGCCCTGGAGTAGGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS CCA 90 bp | GTCCACCGAATTTTTCTTCTAGTCGTAGACCCACTTCCTTTCTCTTaGGTTCAAACAGTACCGTCAGCACCCGCTGCTCGTAGGAGATGG | + |
|
Preference number: 5 (lower is better) Translates to: VHRIFLLVVDPLPFS*VQTVPSAPAARRRW Trigger: CCATCTCCTACGAGCAGCGGGTGCTGACGGTACTGTTTGAACCCAAGAGAAAGGAAGTGGGTCTACGACTAGAAGAAAAATTCGGTGGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
||
| CDS-3UTR CAA 90 bp | AGGACAGCCCCTTATAAACCACCATTCTCACTTCCACAGTATCAGCAGCCTGACGGCACTGGGCTAGACTaGTTCAGACACACCATGGAT | + |
|
Preference number: 5 (lower is better) Translates to: RTAPYKPPFSLPQYQQPDGTGLD*FRHTMD Trigger: ATCCATGGTGTGTCTGAACAAGTCTAGCCCAGTGCC...GTCAGGCTGCTGATACTGTGGAAGTGAGAATGGTGGTTTATAAGGGGCTGTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS-3UTR CAA 90 bp | AAGCCCTACTCCAGGGCCAAGGACCTCTTTCTTGGCTTAGCAGGATGCAGGTGGATGATGGAACAGCTTTaGGCCTTTTCCTTCTTGAAT | + |
|
Preference number: 5 (lower is better) Translates to: KPYSRAKDLFLGLAGCRWMMEQL*AFSFLN Trigger: ATTCAAGAAGGAAAAGGCCAAAAGCTGTTCCATCAT...CCACCTGCATCCTGCTAAGCCAAGAAAGAGGTCCTTGGCCCTGGAGTAGGGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
||
| CDS-3UTR CAA 90 bp | ATACTAATTTTATCTTGCCATAGCCTTTTCTATCCCACCTGTGCACACATGCCCTCTGTTCTCCACTTCTaGAGTGCACTGTCCATGGTC | + |
|
Preference number: 5 (lower is better) Translates to: ILILSCHSLFYPTCAHMPSVLHF*SALSMV Trigger: GACCATGGACAGTGCACTCAAGAAGTGGAGAACAGA...GGGCATGTGTGCACAGGTGGGATAGAAAAGGCTATGGCAAGATAAAATTAGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120997.2 |
||
| CDS-3UTR CAA 90 bp | AGGACAGCCCCTTATAAACCACCATTCTCACTTCCACAGTATCAGCAGCCTGACTTGGCCTTTTCCTTCTaGAATGTAGTTGAGATGAGT | + |
|
Preference number: 5 (lower is better) Translates to: RTAPYKPPFSLPQYQQPDLAFSF*NVVEMS Trigger: ACTCATCTCAACTACATTCAAGAAGGAAAAGGCCAA...GTCAGGCTGCTGATACTGTGGAAGTGAGAATGGTGGTTTATAAGGGGCTGTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
||
| CDS-3UTR CAA 90 bp | CAGGAAGTGATTTTATCCAGAGGACACTCAGCAATATCTAGAGACATTTTTGGCTCTGTTCTCCACTTCTaGAGTGCACTGTCCATGGTC | + |
|
Preference number: 5 (lower is better) Translates to: QEVILSRGHSAISRDIFGSVLHF*SALSMV Trigger: GACCATGGACAGTGCACTCAAGAAGTGGAGAACAGA...GCCAAAAATGTCTCTAGATATTGCTGAGTGTCCTCTGGATAAAATCACTTCCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
||
| CDS-3UTR CAA 90 bp | AACATTTCAGAGGTTTCCCTGGAAGGACTTCCCCCTCAAGTATCTTACTATTTAGTTCGAAGATCTGTCTaGCAGCCAATAAGCAAAACA | + |
|
Preference number: 5 (lower is better) Translates to: NISEVSLEGLPPQVSYYLVRRSV*QPISKT Trigger: TGTTTTGCTTATTGGCTGCAAGACAGATCTTCGAAC...TAAATAGTAAGATACTTGAGGGGGAAGTCCTTCCAGGGAAACCTCTGAAATGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
||
| CDS TCA 72 bp | CACACTGCACGTCTCCCACCAGGACGAGCTTACACCTaGCCACCACTGGCTGCGGTGCCCGTCTCTCCTTCA | + |
|
Preference number: 6 (lower is better) Translates to: HTARLPPGRAYT*PPLAAVPVSPS Trigger: TGAAGGAGAGACGGGCACCGCAGCCAGTGGTGGTCAGGTGTAAGCTCGTCCTGGTGGGAGACGTGCAGTGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003451.11 ENSMUST00000109149.9 ENSMUST00000120997.2 |
||
| CDS GCA 72 bp | CTCGGAAGTGAAAGCCGAGCCCTCCAGGTAGATTTCTaGGCCCAACTGCTTGGCTATCGCACAGCCCTGCTC | + |
|
Preference number: 6 (lower is better) Translates to: LGSESRALQVDF*AQLLGYRTALL Trigger: GAGCAGGGCTGTGCGATAGCCAAGCAGTTGGGCGCAGAAATCTACCTGGAGGGCTCGGCTTTCACTTCCGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
||
| CDS CCA 72 bp | CTTGGAAAGGCTTCGGACGGGGCTCTTCGGGGGCACTaGGCTAGACTTGTTCAGACACACCATGGATGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: LGKASDGALRGH*ARLVQTHHGCC Trigger: ACAGCATCCATGGTGTGTCTGAACAAGTCTAGCCCAGTGCCCCCGAAGAGCCCCGTCCGAAGCCTTTCCAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
||
| CDS CCA 72 bp | ACTGCTTGGCTATCGCACAGCCCTGCTCGTAGGAGATaGGTGCCTGCTTCTGGTGGGACAGTTCCATTAGAG | + |
|
Preference number: 6 (lower is better) Translates to: TAWLSHSPARRR*VPASGGTVPLE Trigger: CTCTAATGGAACTGTCCCACCAGAAGCAGGCACCCATCTCCTACGAGCAGGGCTGTGCGATAGCCAAGCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
||
| CDS CCA 72 bp | AATGTAGTTGAGATGAGTTCAGAGCGACTGGGGAGGTaGAGGAGTCGCTTGGAAAGGCTTCGGACGGGGCTC | + |
|
Preference number: 6 (lower is better) Translates to: NVVEMSSERLGR*RSRLERLRTGL Trigger: GAGCCCCGTCCGAAGCCTTTCCAAGCGACTCCTCCACCTCCCCAGTCGCTCTGAACTCATCTCAACTACATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
||
| CDS CCA 72 bp | CAAACAGTACCGTCAGCACCCGCTGCTCGTAGGAGATaGGTGCCTGCTTCTGGTGGGACAGTTCCATTAGAG | + |
|
Preference number: 6 (lower is better) Translates to: QTVPSAPAARRR*VPASGGTVPLE Trigger: CTCTAATGGAACTGTCCCACCAGAAGCAGGCACCCATCTCCTACGAGCAGCGGGTGCTGACGGTACTGTTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
||
| CDS TCA 72 bp | CTGTCCGGAAAATGCTGTGGATGCTTGTCTCGGAAGTaGAAGCCGAGCCCTCCAGGTAGATTTCTGCGCCCA | + |
|
Preference number: 6 (lower is better) Translates to: LSGKCCGCLSRK*KPSPPGRFLRP Trigger: TGGGCGCAGAAATCTACCTGGAGGGCTCGGCTTTCACTTCCGAGACAAGCATCCACAGCATTTTCCGGACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS GCA 72 bp | GGGCACTGGGCTAGACTTGTTCAGACACACCATGGATaGTGTCCGGAAAATGCTGTGGATGCTTGTCTCGGA | + |
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Preference number: 6 (lower is better) Translates to: GHWARLVQTHHG*CPENAVDACLG Trigger: TCCGAGACAAGCATCCACAGCATTTTCCGGACAGCATCCATGGTGTGTCTGAACAAGTCTAGCCCAGTGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS CCA 72 bp | TTCAGACACACCATGGATGCTGTCCGGAAAATGCTGTaGATGCTTGTCTCGGAAGTGAAAGCCGAGCCCTCC | + |
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Preference number: 6 (lower is better) Translates to: FRHTMDAVRKML*MLVSEVKAEPS Trigger: GGAGGGCTCGGCTTTCACTTCCGAGACAAGCATCCACAGCATTTTCCGGACAGCATCCATGGTGTGTCTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003451.11 |
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| CDS CCA 72 bp | ACACACACACATGCACACACACCTGCTCGTAGGAGATaGGTGCCTGCTTCTGGTGGGACAGTTCCATTAGAG | + |
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Preference number: 6 (lower is better) Translates to: THTHAHTPARRR*VPASGGTVPLE Trigger: CTCTAATGGAACTGTCCCACCAGAAGCAGGCACCCATCTCCTACGAGCAGGTGTGTGTGCATGTGTGTGTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120997.2 |
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| CDS CCA 72 bp | ATTTTTCTTCTAGTCGTAGACCCACTTCCTTTCTCTTaGGTTCAAACAGTACCGTCAGCACCCGCTGCTCGT | + |
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Preference number: 6 (lower is better) Translates to: IFLLVVDPLPFS*VQTVPSAPAAR Trigger: ACGAGCAGCGGGTGCTGACGGTACTGTTTGAACCCAAGAGAAAGGAAGTGGGTCTACGACTAGAAGAAAAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109149.9 |
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| CDS CAA 72 bp | TCCATTAGAGTGCTCAGGTCTGTTCGAAGATCTGTCTaGCAGCCAATAAGCAAAACACGTGTGCTGGGACAG | + |
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Preference number: 6 (lower is better) Translates to: SIRVLRSVRRSV*QPISKTRVLGQ Trigger: CTGTCCCAGCACACGTGTTTTGCTTATTGGCTGCAAGACAGATCTTCGAACAGACCTGAGCACTCTAATGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003451.11 ENSMUST00000109149.9 ENSMUST00000120997.2 |
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