Pregenerated sensors for RNASET2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000094724Ensembl transcript IDs: ENSMUST00000089119.13, ENSMUST00000179728.2, ENSMUST00000232245.2, ENSMUST00000232304.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCAGAGTGTAGGAAACGTAACCCACAAGGGGGAAGAAAGGTCTGCTaGGTCAAGGCCCAAGGACGTCCTTCTCCTAGGGGCTCCACATAC | + |
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Preference number: 1 (lower is better) Translates to: AECRKRNPQGGRKVC*VKAQGRPSPRGSTY Trigger: GTATGTGGAGCCCCTAGGAGAAGGACGTCCTTGGGCCTTGACCCAGCAGACCTTTCTTCCCCCTTGTGGGTTACGTTTCCTACACTCTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR CCA 90 bp | AGCAGGAACTCTGGAGAGAAAGGGGCACCATTCTCTTCTGTTATGTaGCCCAATGGAGTCTTCCTCATAATCCACAAAAGCAGGGCATTC | + |
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Preference number: 1 (lower is better) Translates to: SRNSGEKGAPFSSVM*PNGVFLIIHKSRAF Trigger: GAATGCCCTGCTTTTGTGGATTATGAGGAAGACTCCATTGGGCCACATAACAGAAGAGAATGGTGCCCCTTTCTCTCCAGAGTTCCTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR GCA 90 bp | TCCTGCCCTAGGGGACCTGACACCTCTTCTAGTCTCAGCAGGTACTaGACTCACGTGCACAAACCCACACACATAATTAAAATAGAAATG | + |
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Preference number: 1 (lower is better) Translates to: SCPRGPDTSSSLSRY*THVHKPTHIIKIEM Trigger: CATTTCTATTTTAATTATGTGTGTGGGTTTGTGCACGTGAGTGCAGTACCTGCTGAGACTAGAAGAGGTGTCAGGTCCCCTAGGGCAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR CCA 90 bp | GTGGACACCCAAGTCATGGCACCTCCCACAAAACAGAAACGCACTTaGCTGAATAGCCTTAAGGAAAATCTCCAAGGTGATAAGAAACGC | + |
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Preference number: 1 (lower is better) Translates to: VDTQVMAPPTKQKRT*LNSLKENLQGDKKR Trigger: GCGTTTCTTATCACCTTGGAGATTTTCCTTAAGGCTATTCAGCCAAGTGCGTTTCTGTTTTGTGGGAGGTGCCATGACTTGGGTGTCCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR-3UTR CCA 90 bp | AGGACCAGGCTCAAAGTGTGGACACCCAAGTCATGGCACCTCCCACAAAACAGACTTCCGTGTGTGGAGTaGAGCAGGGCAGAGTGTAGG | + |
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Preference number: 2 (lower is better) Translates to: RTRLKVWTPKSWHLPQNRLPCVE*SRAECR Trigger: CCTACACTCTGCCCTGCTCCACTCCACACACGGAAG...TCTGTTTTGTGGGAGGTGCCATGACTTGGGTGTCCACACTTTGAGCCTGGTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR-3UTR GCA 90 bp | GTGACACCACAGGCAGCGTGGGTAAGCCCAGTTGCAGAAGCAGGAACTCTGGAGGTAGGATTGTCTAATTaGTTCCTCCCTTGGCAGCTT | + |
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Preference number: 2 (lower is better) Translates to: VTPQAAWVSPVAEAGTLEVGLSN*FLPWQL Trigger: AAGCTGCCAAGGGAGGAAGCAATTAGACAATCCTAC...CTCCAGAGTTCCTGCTTCTGCAACTGGGCTTACCCACGCTGCCTGTGGTGTCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR-3UTR CCA 90 bp | TGCCATAGTATGTGCACCTACACACACACACACACACACACACACACAGGTCATCTGACAGTGGCTGTGTaGCAGCCAGCTGGCAGGAAC | + |
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Preference number: 2 (lower is better) Translates to: CHSMCTYTHTHTHTHTGHLTVAV*QPAGRN Trigger: GTTCCTGCCAGCTGGCTGCCACACAGCCACTGTCAG...ATGACCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTGCACATACTATGGCA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089119.13 |
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| 3UTR-3UTR CCA 90 bp | TGCCATAGTATGTGCACCTACACACACACACACACACACACACACACAGGTCATTGTGTGGCAGCCAGCTaGCAGGAACAAGCACAGCAG | + |
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Preference number: 2 (lower is better) Translates to: CHSMCTYTHTHTHTHTGHCVAAS*QEQAQQ Trigger: CTGCTGTGCTTGTTCCTGCCAGCTGGCTGCCACACA...ATGACCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTGCACATACTATGGCA 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089119.13 |
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| 3UTR-3UTR CCA 90 bp | ACTCTGGAGAGAAAGGGGCACCATTCTCTTCTGTTATGTGGCCCAATGGAGTCTCAAAGCTTCCGTGTGTaGAGTGGAGCAGGGCAGAGT | + |
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Preference number: 2 (lower is better) Translates to: TLERKGHHSLLLCGPMESQSFRV*SGAGQS Trigger: ACTCTGCCCTGCTCCACTCCACACACGGAAGCTTTG...AGACTCCATTGGGCCACATAACAGAAGAGAATGGTGCCCCTTTCTCTCCAGAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR-3UTR CCA 90 bp | CAAGTCATGGCACCTCCCACAAAACAGAAACGCACTTGGCTGAATAGCCTTAAGCAGAAGCAGGAACTCTaGAGAGAAAGGGGCACCATT | + |
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Preference number: 2 (lower is better) Translates to: QVMAPPTKQKRTWLNSLKQKQEL*RERGTI Trigger: AATGGTGCCCCTTTCTCTCCAGAGTTCCTGCTTCTG...CTTAAGGCTATTCAGCCAAGTGCGTTTCTGTTTTGTGGGAGGTGCCATGACTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR-3UTR GCA 90 bp | CTAGGGGACCTGACACCTCTTCTAGTCTCAGCAGGTACTGCACTCACGTGCACATTTATCTCTGGTGTCTaGTTTGTAGGACACAAAATA | + |
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Preference number: 2 (lower is better) Translates to: LGDLTPLLVSAGTALTCTFISGV*FVGHKI Trigger: TATTTTGTGTCCTACAAAGCAGACACCAGAGATAAA...TGTGCACGTGAGTGCAGTACCTGCTGAGACTAGAAGAGGTGTCAGGTCCCCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR-3UTR CCA 90 bp | GCTTTAGCAGAGGACCCAAGTTCAGTTCTCAGTACCCACTATCAGACAGCTAACAGCAATTCTCAAACCTaGAGTCCAGGAAGGAAGCAT | + |
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Preference number: 2 (lower is better) Translates to: ALAEDPSSVLSTHYQTANSNSQT*SPGRKH Trigger: ATGCTTCCTTCCTGGACTCCAGGTTTGAGAATTGCT...GTTAGCTGTCTGATAGTGGGTACTGAGAACTGAACTTGGGTCCTCTGCTAAAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR-3UTR GCA 90 bp | CAAGTCATGGCACCTCCCACAAAACAGAAACGCACTTGGCTGAATAGCCTTAAGGCATTTCATAGATGTTaGAGCTGGGTAGGATTGTCT | + |
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Preference number: 2 (lower is better) Translates to: QVMAPPTKQKRTWLNSLKAFHRC*SWVGLS Trigger: AGACAATCCTACCCAGCTGCAACATCTATGAAATGC...CTTAAGGCTATTCAGCCAAGTGCGTTTCTGTTTTGTGGGAGGTGCCATGACTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR-3UTR CCA 90 bp | GCTTTAGCAGAGGACCCAAGTTCAGTTCTCAGTACCCACTATCAGACAGCTAACTCAGGACTTTATCTCTaGTGTCTGCTTTGTAGGACA | + |
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Preference number: 2 (lower is better) Translates to: ALAEDPSSVLSTHYQTANSGLYL*CLLCRT Trigger: TGTCCTACAAAGCAGACACCAGAGATAAAGTCCTGA...GTTAGCTGTCTGATAGTGGGTACTGAGAACTGAACTTGGGTCCTCTGCTAAAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR-3UTR CCA 90 bp | CAAGTCATGGCACCTCCCACAAAACAGAAACGCACTTGGCTGAATAGCCTTAAGCTCATTACATCATCATaGGAATCGAATGTGGCTGTA | + |
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Preference number: 2 (lower is better) Translates to: QVMAPPTKQKRTWLNSLKLITSS*ESNVAV Trigger: TACAGCCACATTCGATTCCCATGATGATGTAATGAG...CTTAAGGCTATTCAGCCAAGTGCGTTTCTGTTTTGTGGGAGGTGCCATGACTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR CCA 72 bp | AGGAAACGTAACCCACAAGGGGGAAGAAAGGTCTGCTaGGTCAAGGCCCAAGGACGTCCTTCTCCTAGGGGC | + |
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Preference number: 3 (lower is better) Translates to: RKRNPQGGRKVC*VKAQGRPSPRG Trigger: GCCCCTAGGAGAAGGACGTCCTTGGGCCTTGACCCAGCAGACCTTTCTTCCCCCTTGTGGGTTACGTTTCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR GCA 72 bp | TGTAGGAAACGTAACCCACAAGGGGGAAGAAAGGTCTaGTGGGTCAAGGCCCAAGGACGTCCTTCTCCTAGG | + |
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Preference number: 3 (lower is better) Translates to: CRKRNPQGGRKV*WVKAQGRPSPR Trigger: CCTAGGAGAAGGACGTCCTTGGGCCTTGACCCAGCAGACCTTTCTTCCCCCTTGTGGGTTACGTTTCCTACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR GCA 72 bp | GGGCAGGCAGGAAGGGTAACCTCTCCGTTAAGCCTTTaGAACACAGAAGCCAAGCAATTCTCAAACCTGGAG | + |
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Preference number: 3 (lower is better) Translates to: GQAGRVTSPLSL*NTEAKQFSNLE Trigger: CTCCAGGTTTGAGAATTGCTTGGCTTCTGTGTTGCAAAGGCTTAACGGAGAGGTTACCCTTCCTGCCTGCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR CCA 72 bp | GCATTGAGCAGCAACTCAAGGACCAGGCTCAAAGTGTaGACACCCAAGTCATGGCACCTCCCACAAAACAGA | + |
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Preference number: 3 (lower is better) Translates to: ALSSNSRTRLKV*TPKSWHLPQNR Trigger: TCTGTTTTGTGGGAGGTGCCATGACTTGGGTGTCCACACTTTGAGCCTGGTCCTTGAGTTGCTGCTCAATGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR-3UTR CAA 90 bp | TGGGTAAGCCCAGTTGCAGAAGCAGGAACTCTGGAGAGAAAGGGGCACCATTCTCGTGCGGAAAAGAAGTaGACGTCTCAGGACTTTATC | + |
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Preference number: 3 (lower is better) Translates to: WVSPVAEAGTLERKGHHSRAEKK*TSQDFI Trigger: GATAAAGTCCTGAGACGTCAACTTCTTTTCCGCACG...AGAATGGTGCCCCTTTCTCTCCAGAGTTCCTGCTTCTGCAACTGGGCTTACCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR-3UTR CAA 90 bp | AGGACCAGGCTCAAAGTGTGGACACCCAAGTCATGGCACCTCCCACAAAACAGAGCAACAGTAAAGCTTTaGGGGGTGGCACATTCAACA | + |
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Preference number: 3 (lower is better) Translates to: RTRLKVWTPKSWHLPQNRATVKL*GVAHST Trigger: TGTTGAATGTGCCACCCCCAAAAGCTTTACTGTTGC...TCTGTTTTGTGGGAGGTGCCATGACTTGGGTGTCCACACTTTGAGCCTGGTCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR TCA 72 bp | GAAACCGGGATGAAGTTATGGCTTAGGAAGCAGCATTaGGCAGCAACTCAAGGACCAGGCTCAAAGTGTGGA | + |
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Preference number: 3 (lower is better) Translates to: ETGMKLWLRKQH*AATQGPGSKCG Trigger: TCCACACTTTGAGCCTGGTCCTTGAGTTGCTGCTCAATGCTGCTTCCTAAGCCATAACTTCATCCCGGTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR GCA 72 bp | GCAATTCTCAAACCTGGAGTCCAGGAAGGAAGCATTTaGCAAGCTATTAGACACAAAGCTTCCGTGTGTGGA | + |
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Preference number: 3 (lower is better) Translates to: AILKPGVQEGSI*QAIRHKASVCG Trigger: TCCACACACGGAAGCTTTGTGTCTAATAGCTTGGCAAATGCTTCCTTCCTGGACTCCAGGTTTGAGAATTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR CCA 72 bp | TGCGGAAAAGAAGTTGACGTCTCAGGACTTTATCTCTaGTGTCTGCTTTGTAGGACACAAAATATTTCCAAA | + |
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Preference number: 3 (lower is better) Translates to: CGKEVDVSGLYL*CLLCRTQNISK Trigger: TTTGGAAATATTTTGTGTCCTACAAAGCAGACACCAGAGATAAAGTCCTGAGACGTCAACTTCTTTTCCGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR GCA 72 bp | AAGAAGTTGACGTCTCAGGACTTTATCTCTGGTGTCTaGTTTGTAGGACACAAAATATTTCCAAAATGTGAA | + |
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Preference number: 3 (lower is better) Translates to: KKLTSQDFISGV*FVGHKIFPKCE Trigger: TTCACATTTTGGAAATATTTTGTGTCCTACAAAGCAGACACCAGAGATAAAGTCCTGAGACGTCAACTTCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| CDS-3UTR GCA 90 bp | GTGACACCACAGGCAGCGTGGGTAAGCCCAGTTGCAGAAGCAGGAACTCTGGAGACTGTTGGGGGCCAGTaGTGGGTCAAAATTAGTTTT | + |
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Preference number: 4 (lower is better) Translates to: VTPQAAWVSPVAEAGTLETVGGQ*WVKISF Trigger: AAAACTAATTTTGACCCAGCACTGGCCCCCAACAGT...CTCCAGAGTTCCTGCTTCTGCAACTGGGCTTACCCACGCTGCCTGTGGTGTCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| 3UTR CAA 72 bp | GGGGCAGGCAGGAAGGGTAACCTCTCCGTTAAGCCTTaGCAACACAGAAGCCAAGCAATTCTCAAACCTGGA | + |
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Preference number: 4 (lower is better) Translates to: GAGRKGNLSVKP*QHRSQAILKPG Trigger: TCCAGGTTTGAGAATTGCTTGGCTTCTGTGTTGCAAAGGCTTAACGGAGAGGTTACCCTTCCTGCCTGCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| CDS-3UTR GCA 90 bp | ATTCTCAAACCTGGAGTCCAGGAAGGAAGCATTTGCCAAGCTATTAGACACAAATGCCTGGAGGACAGCTaGTCCCCTGGCTCAGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: ILKPGVQEGSICQAIRHKCLEDS*SPGSVQ Trigger: CTGCACTGAGCCAGGGGAGCAGCTGTCCTCCAGGCA...TTTGTGTCTAATAGCTTGGCAAATGCTTCCTTCCTGGACTCCAGGTTTGAGAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| CDS-3UTR GCA 90 bp | TTTTTCTCTTACCTCTATATAGGTGCCATAGTATGTGCACCTACACACACACACTGCCTGGAGGACAGCTaGTCCCCTGGCTCAGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: FFSYLYIGAIVCAPTHTHCLEDS*SPGSVQ Trigger: CTGCACTGAGCCAGGGGAGCAGCTGTCCTCCAGGCA...GTGTGTGTGTGTAGGTGCACATACTATGGCACCTATATAGAGGTAAGAGAAAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089119.13 |
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| CDS-3UTR GCA 90 bp | AGGACCAGGCTCAAAGTGTGGACACCCAAGTCATGGCACCTCCCACAAAACAGATCATCTAAGTTAAAGTaGCAGGACTGGTTACAATCT | + |
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Preference number: 4 (lower is better) Translates to: RTRLKVWTPKSWHLPQNRSSKLK*QDWLQS Trigger: AGATTGTAACCAGTCCTGGCACTTTAACTTAGATGA...TCTGTTTTGTGGGAGGTGCCATGACTTGGGTGTCCACACTTTGAGCCTGGTCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| CDS-3UTR GCA 90 bp | CTATATAGGTGCCATAGTATGTGCACCTACACACACACACACACACACACACACACTGTTGGGGGCCAGTaGTGGGTCAAAATTAGTTTT | + |
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Preference number: 4 (lower is better) Translates to: LYRCHSMCTYTHTHTHTHTVGGQ*WVKISF Trigger: AAAACTAATTTTGACCCAGCACTGGCCCCCAACAGT...GTGTGTGTGTGTGTGTGTGTGTGTGTAGGTGCACATACTATGGCACCTATATAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089119.13 |
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| CDS-3UTR GCA 90 bp | TGGGTAAGCCCAGTTGCAGAAGCAGGAACTCTGGAGAGAAAGGGGCACCATTCTATAGATTCTGGTAAGTaGATCTTTGAAATCTGCAAG | + |
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Preference number: 4 (lower is better) Translates to: WVSPVAEAGTLERKGHHSIDSGK*IFEICK Trigger: CTTGCAGATTTCAAAGATGCACTTACCAGAATCTAT...AGAATGGTGCCCCTTTCTCTCCAGAGTTCCTGCTTCTGCAACTGGGCTTACCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| CDS-3UTR GCA 90 bp | CTATATAGGTGCCATAGTATGTGCACCTACACACACACACACACACACACACACTGCATCTTTGAAATCTaGAAGCTGGTAGTAGTTGAT | + |
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Preference number: 4 (lower is better) Translates to: LYRCHSMCTYTHTHTHTHCIFEI*KLVVVD Trigger: ATCAACTACTACCAGCTTGCAGATTTCAAAGATGCA...GTGTGTGTGTGTGTGTGTGTGTGTGTAGGTGCACATACTATGGCACCTATATAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089119.13 |
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| CDS-3UTR GCA 90 bp | TGCCATAGTATGTGCACCTACACACACACACACACACACACACACACAGGTCATATAGATTCTGGTAAGTaGATCTTTGAAATCTGCAAG | + |
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Preference number: 4 (lower is better) Translates to: CHSMCTYTHTHTHTHTGHIDSGK*IFEICK Trigger: CTTGCAGATTTCAAAGATGCACTTACCAGAATCTAT...ATGACCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTGCACATACTATGGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089119.13 |
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| CDS-3UTR GCA 90 bp | TTTTTCTCTTACCTCTATATAGGTGCCATAGTATGTGCACCTACACACACACACTCATCTAAGTTAAAGTaGCAGGACTGGTTACAATCT | + |
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Preference number: 4 (lower is better) Translates to: FFSYLYIGAIVCAPTHTHSSKLK*QDWLQS Trigger: AGATTGTAACCAGTCCTGGCACTTTAACTTAGATGA...GTGTGTGTGTGTAGGTGCACATACTATGGCACCTATATAGAGGTAAGAGAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089119.13 |
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| CDS TCA 90 bp | GCTCCCCTGGCTCAGTGCAGTTCCGCAAATGTAAGTCCTCCTTGGTaGAGCACAGCTCTATCTGGCCAACGGTCTGCACGCTCTCTCCCT | + |
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Preference number: 5 (lower is better) Translates to: APLAQCSSANVSPPW*STALSGQRSARSLP Trigger: AGGGAGAGAGCGTGCAGACCGTTGGCCAGATAGAGCTGTGCTTCACCAAGGAGGACTTACATTTGCGGAACTGCACTGAGCCAGGGGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000089119.13 ENSMUST00000179728.2 ENSMUST00000232245.2 ENSMUST00000232304.2 |
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| CDS-3UTR CAA 90 bp | CTAGGGGACCTGACACCTCTTCTAGTCTCAGCAGGTACTGCACTCACGTGCACAGTGGAGGGTAGAAGATaGGACCGTCTTCACAGACCA | + |
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Preference number: 5 (lower is better) Translates to: LGDLTPLLVSAGTALTCTVEGRR*DRLHRP Trigger: TGGTCTGTGAAGACGGTCCAATCTTCTACCCTCCAC...TGTGCACGTGAGTGCAGTACCTGCTGAGACTAGAAGAGGTGTCAGGTCCCCTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| CDS-3UTR CAA 90 bp | CTAGGGGACCTGACACCTCTTCTAGTCTCAGCAGGTACTGCACTCACGTGCACAGTAATCCAGAGAGTCTaGGCAGCTGTTAACCTCCTT | + |
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Preference number: 5 (lower is better) Translates to: LGDLTPLLVSAGTALTCTVIQRV*AAVNLL Trigger: AAGGAGGTTAACAGCTGCCAAGACTCTCTGGATTAC...TGTGCACGTGAGTGCAGTACCTGCTGAGACTAGAAGAGGTGTCAGGTCCCCTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| CDS-3UTR CAA 90 bp | CTAGGGGACCTGACACCTCTTCTAGTCTCAGCAGGTACTGCACTCACGTGCACACTCATGTTTCCAGAATaGGCTGCGATTAGAAGACCG | + |
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Preference number: 5 (lower is better) Translates to: LGDLTPLLVSAGTALTCTLMFPE*AAIRRP Trigger: CGGTCTTCTAATCGCAGCCAATTCTGGAAACATGAG...TGTGCACGTGAGTGCAGTACCTGCTGAGACTAGAAGAGGTGTCAGGTCCCCTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179728.2 |
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| CDS CCA 90 bp | AGGCTCTTCCCAAAGTACTTCTTCTCGGAATTGAGGGCGTCTACCTaGGCAGCACAGGTGCCGTGTTTAACCCACTCATGTTTCCAGAAT | + |
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Preference number: 5 (lower is better) Translates to: RLFPKYFFSELRAST*AAQVPCLTHSCFQN Trigger: ATTCTGGAAACATGAGTGGGTTAAACACGGCACCTGTGCTGCCCAGGTAGACGCCCTCAATTCCGAGAAGAAGTACTTTGGGAAGAGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000089119.13 ENSMUST00000179728.2 ENSMUST00000232245.2 ENSMUST00000232304.2 |
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| CDS-3UTR CAA 90 bp | TGCCATAGTATGTGCACCTACACACACACACACACACACACACACACAGGTCATGTAATCCAGAGAGTCTaGGCAGCTGTTAACCTCCTT | + |
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Preference number: 5 (lower is better) Translates to: CHSMCTYTHTHTHTHTGHVIQRV*AAVNLL Trigger: AAGGAGGTTAACAGCTGCCAAGACTCTCTGGATTAC...ATGACCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTGCACATACTATGGCA 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089119.13 |
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| CDS-3UTR CAA 90 bp | CTCTATATAGGTGCCATAGTATGTGCACCTACACACACACACACACACACACACCTCATGTTTCCAGAATaGGCTGCGATTAGAAGACCG | + |
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Preference number: 5 (lower is better) Translates to: LYIGAIVCAPTHTHTHTHLMFPE*AAIRRP Trigger: CGGTCTTCTAATCGCAGCCAATTCTGGAAACATGAG...GTGTGTGTGTGTGTGTGTGTGTGTAGGTGCACATACTATGGCACCTATATAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089119.13 |
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| CDS-3UTR CAA 90 bp | TTTTTCTCTTACCTCTATATAGGTGCCATAGTATGTGCACCTACACACACACACGTGGAGGGTAGAAGATaGGACCGTCTTCACAGACCA | + |
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Preference number: 5 (lower is better) Translates to: FFSYLYIGAIVCAPTHTHVEGRR*DRLHRP Trigger: TGGTCTGTGAAGACGGTCCAATCTTCTACCCTCCAC...GTGTGTGTGTGTAGGTGCACATACTATGGCACCTATATAGAGGTAAGAGAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089119.13 |
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| CDS-3UTR CAA 90 bp | CTCTATATAGGTGCCATAGTATGTGCACCTACACACACACACACACACACACACTTTTGTAGCACACTGTaGAGGTCAATCTGCTTGTAC | + |
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Preference number: 5 (lower is better) Translates to: LYIGAIVCAPTHTHTHTHFCSTL*RSICLY Trigger: GTACAAGCAGATTGACCTCAACAGTGTGCTACAAAA...GTGTGTGTGTGTGTGTGTGTGTGTAGGTGCACATACTATGGCACCTATATAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089119.13 |
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| CDS CCA 90 bp | TCTCGCAAAAGGTCCTTAATCTCATCTAAGTTAAAGTGCCAGGACTaGTTACAATCTTCTGCTCTATCGGGCCATAGTCCATGTATTGTC | + |
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Preference number: 5 (lower is better) Translates to: SRKRSLISSKLKCQD*LQSSALSGHSPCIV Trigger: GACAATACATGGACTATGGCCCGATAGAGCAGAAGATTGTAACCAGTCCTGGCACTTTAACTTAGATGAGATTAAGGACCTTTTGCGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089119.13 ENSMUST00000179728.2 |
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| CDS CAA 90 bp | AGCTGCTCCCCTGGCTCAGTGCAGTTCCGCAAATGTAAGTCCTCCTaGGTGAAGCACAGCTCTATCTGGCCAACGGTCTGCACGCTCTCT | + |
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Preference number: 6 (lower is better) Translates to: SCSPGSVQFRKCKSS*VKHSSIWPTVCTLS Trigger: AGAGAGCGTGCAGACCGTTGGCCAGATAGAGCTGTGCTTCACCAAGGAGGACTTACATTTGCGGAACTGCACTGAGCCAGGGGAGCAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000089119.13 ENSMUST00000179728.2 ENSMUST00000232245.2 ENSMUST00000232304.2 |
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| CDS TCA 72 bp | GATCCAGGCTCTTCCCAAAGTACTTCTTCTCGGAATTaGGGGCGTCTACCTGGGCAGCACAGGTGCCGTGTT | + |
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Preference number: 6 (lower is better) Translates to: DPGSSQSTSSRN*GRLPGQHRCRV Trigger: AACACGGCACCTGTGCTGCCCAGGTAGACGCCCTCAATTCCGAGAAGAAGTACTTTGGGAAGAGCCTGGATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000089119.13 ENSMUST00000179728.2 ENSMUST00000232245.2 ENSMUST00000232304.2 |
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| CDS CAA 72 bp | AGATCCAGGCTCTTCCCAAAGTACTTCTTCTCGGAATaGAGGGCGTCTACCTGGGCAGCACAGGTGCCGTGT | + |
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Preference number: 6 (lower is better) Translates to: RSRLFPKYFFSE*RASTWAAQVPC Trigger: ACACGGCACCTGTGCTGCCCAGGTAGACGCCCTCAATTCCGAGAAGAAGTACTTTGGGAAGAGCCTGGATCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000089119.13 ENSMUST00000179728.2 ENSMUST00000232245.2 ENSMUST00000232304.2 |
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| CDS CAA 72 bp | ATGGATGGCTTGATCCCAAATTTTTGTAGCACACTGTaGAGGTCAATCTGCTTGTACAGATCCAGGCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: MDGLIPNFCSTL*RSICLYRSRLF Trigger: GAAGAGCCTGGATCTGTACAAGCAGATTGACCTCAACAGTGTGCTACAAAAATTTGGGATCAAGCCATCCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000089119.13 ENSMUST00000179728.2 ENSMUST00000232245.2 ENSMUST00000232304.2 |
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