Pregenerated sensors for RNASET2A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095687Ensembl transcript IDs: ENSMUST00000097420.7, ENSMUST00000231927.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCAGAGTGTAGGAAGCGTAACCCACAAGGGGGAAGAAAGGTCTGCTaGGTCAAGGCCCAAGGACGTCCTTCTCCTAGGGGCTCCACATAC | + |
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Preference number: 1 (lower is better) Translates to: AECRKRNPQGGRKVC*VKAQGRPSPRGSTY Trigger: GTATGTGGAGCCCCTAGGAGAAGGACGTCCTTGGGCCTTGACCCAGCAGACCTTTCTTCCCCCTTGTGGGTTACGCTTCCTACACTCTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR GCA 90 bp | TCGATCTCAGCCTGTGACACCACAGGCAGCGTGGGTAAGCCCAGTTaGAGAAGCAGGAACTCTGGAGAGAAAGGGGCACCATTCTCTTCT | + |
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Preference number: 1 (lower is better) Translates to: SISACDTTGSVGKPS*RSRNSGEKGAPFSS Trigger: AGAAGAGAATGGTGCCCCTTTCTCTCCAGAGTTCCTGCTTCTGCAACTGGGCTTACCCACGCTGCCTGTGGTGTCACAGGCTGAGATCGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR GCA 90 bp | TGGGAATCGAATGTGGCTGTAAAAATATGGGCATTTCATAGATGTTaGAGCTGGGTAGGATTGTCTAATTGCTTCCTCCCTTGGCAGCTT | + |
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Preference number: 1 (lower is better) Translates to: WESNVAVKIWAFHRC*SWVGLSNCFLPWQL Trigger: AAGCTGCCAAGGGAGGAAGCAATTAGACAATCCTACCCAGCTGCAACATCTATGAAATGCCCATATTTTTACAGCCACATTCGATTCCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR TCA 90 bp | ATAAAAAGTTGTTGTGCTGAGACTTTCAAGTTCTTATTAGCAATATaGATCTTGCTTTTCTGGACAGGAAATGAGGCTGATGACAGCGGC | + |
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Preference number: 1 (lower is better) Translates to: IKSCCAETFKFLLAI*ILLFWTGNEADDSG Trigger: GCCGCTGTCATCAGCCTCATTTCCTGTCCAGAAAAGCAAGATTCATATTGCTAATAAGAACTTGAAAGTCTCAGCACAACAACTTTTTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000097420.7 |
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| 3UTR-3UTR TCA 90 bp | GCTCAAAGTGTGGATGCCCAAGTCATGGCACCTCCCACAAAACAGAAACGCACTATCGATCTCAGCCTGTaGCACCACAGGCAGCGTGGG | + |
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Preference number: 2 (lower is better) Translates to: AQSVDAQVMAPPTKQKRTIDLSL*HHRQRG Trigger: CCCACGCTGCCTGTGGTGTCACAGGCTGAGATCGAT...AGTGCGTTTCTGTTTTGTGGGAGGTGCCATGACTTGGGCATCCACACTTTGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR-3UTR TCA 90 bp | GCAGAGGACCCAAGTTCAGTTCTCAGTACCCACTATCAGACAGCTAACAGCTGCAGAAACGCACTTGGCTaGATAGCCTTAAGGAAAATC | + |
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Preference number: 2 (lower is better) Translates to: AEDPSSVLSTHYQTANSCRNALG*IALRKI Trigger: GATTTTCCTTAAGGCTATTCAGCCAAGTGCGTTTCT...GCAGCTGTTAGCTGTCTGATAGTGGGTACTGAGAACTGAACTTGGGTCCTCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR-3UTR GCA 90 bp | GCAGAGGACCCAAGTTCAGTTCTCAGTACCCACTATCAGACAGCTAACAGCTGCCAGGAAGGAAGCATTTaGCAAGCTACTAGACACAAA | + |
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Preference number: 2 (lower is better) Translates to: AEDPSSVLSTHYQTANSCQEGSI*QATRHK Trigger: TTTGTGTCTAGTAGCTTGGCAAATGCTTCCTTCCTG...GCAGCTGTTAGCTGTCTGATAGTGGGTACTGAGAACTGAACTTGGGTCCTCTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR-3UTR CCA 90 bp | AGCCTTTGCAACACGGAAGCCAAGCAATTCTCAAACCTGGAGTCCAGGAAGGAATCAGGACTTTATCTCTaGTGTCTGCTTTGTGGGACA | + |
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Preference number: 2 (lower is better) Translates to: SLCNTEAKQFSNLESRKESGLYL*CLLCGT Trigger: TGTCCCACAAAGCAGACACCAGAGATAAAGTCCTGA...TTCCTTCCTGGACTCCAGGTTTGAGAATTGCTTGGCTTCCGTGTTGCAAAGGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR-3UTR TCA 90 bp | TGGGTAAATTATAGACTTGTTAGTGCTTGTATTACAGCTCATGGTTTAGCGGTTCTTAGGCAGCAGCATTaGGCAGCGACTCAAGGACCA | + |
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Preference number: 2 (lower is better) Translates to: WVNYRLVSACITAHGLAVLRQQH*AATQGP Trigger: TGGTCCTTGAGTCGCTGCTCAATGCTGCTGCCTAAG...AACCGCTAAACCATGAGCTGTAATACAAGCACTAACAAGTCTATAATTTACCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR-3UTR CCA 90 bp | TTTTCTGGAACCACAGAAGCTAGACTGAGGGAAATAAAGCTTTCAGGTCAGATCCTGGTGTCTGCTTTGTaGGACACAAAATATTTCCAA | + |
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Preference number: 2 (lower is better) Translates to: FSGTTEARLREIKLSGQILVSAL*DTKYFQ Trigger: TTGGAAATATTTTGTGTCCCACAAAGCAGACACCAG...GATCTGACCTGAAAGCTTTATTTCCCTCAGTCTAGCTTCTGTGGTTCCAGAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR GCA 72 bp | GCCTGTGACACCACAGGCAGCGTGGGTAAGCCCAGTTaGAGAAGCAGGAACTCTGGAGAGAAAGGGGCACCA | + |
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Preference number: 3 (lower is better) Translates to: ACDTTGSVGKPS*RSRNSGEKGAP Trigger: TGGTGCCCCTTTCTCTCCAGAGTTCCTGCTTCTGCAACTGGGCTTACCCACGCTGCCTGTGGTGTCACAGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR CCA 72 bp | AGGAAGCGTAACCCACAAGGGGGAAGAAAGGTCTGCTaGGTCAAGGCCCAAGGACGTCCTTCTCCTAGGGGC | + |
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Preference number: 3 (lower is better) Translates to: RKRNPQGGRKVC*VKAQGRPSPRG Trigger: GCCCCTAGGAGAAGGACGTCCTTGGGCCTTGACCCAGCAGACCTTTCTTCCCCCTTGTGGGTTACGCTTCCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR GCA 72 bp | TGTAGGAAGCGTAACCCACAAGGGGGAAGAAAGGTCTaGTGGGTCAAGGCCCAAGGACGTCCTTCTCCTAGG | + |
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Preference number: 3 (lower is better) Translates to: CRKRNPQGGRKV*WVKAQGRPSPR Trigger: CCTAGGAGAAGGACGTCCTTGGGCCTTGACCCAGCAGACCTTTCTTCCCCCTTGTGGGTTACGCTTCCTACA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR GCA 72 bp | CCCACTATCAGACAGCTAACAGCTGCCTGTAACTCCTaGCCTAGGGGACCTGACACCTCTTCTAGTCTCAGC | + |
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Preference number: 3 (lower is better) Translates to: PTIRQLTAACNS*PRGPDTSSSLS Trigger: GCTGAGACTAGAAGAGGTGTCAGGTCCCCTAGGGCAGGAGTTACAGGCAGCTGTTAGCTGTCTGATAGTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR GCA 72 bp | GGGCAGGCAGGAAGGGTAACCTCTCCGTTAAGCCTTTaGAACACGGAAGCCAAGCAATTCTCAAACCTGGAG | + |
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Preference number: 3 (lower is better) Translates to: GQAGRVTSPLSL*NTEAKQFSNLE Trigger: CTCCAGGTTTGAGAATTGCTTGGCTTCCGTGTTGCAAAGGCTTAACGGAGAGGTTACCCTTCCTGCCTGCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR-3UTR CAA 90 bp | GCAGAGGACCCAAGTTCAGTTCTCAGTACCCACTATCAGACAGCTAACAGCTGCCTCTCCGTTAAGCCTTaGCAACACGGAAGCCAAGCA | + |
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Preference number: 3 (lower is better) Translates to: AEDPSSVLSTHYQTANSCLSVKP*QHGSQA Trigger: TGCTTGGCTTCCGTGTTGCAAAGGCTTAACGGAGAG...GCAGCTGTTAGCTGTCTGATAGTGGGTACTGAGAACTGAACTTGGGTCCTCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR-3UTR CAA 90 bp | CTGCCTGTAACTCCTGCCCTAGGGGACCTGACACCTCTTCTAGTCTCAGCAGGTTCTCTGGTGTCTGCTTaGTGGGACACAAAATATTTC | + |
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Preference number: 3 (lower is better) Translates to: LPVTPALGDLTPLLVSAGSLVSA*WDTKYF Trigger: GAAATATTTTGTGTCCCACAAAGCAGACACCAGAGA...ACCTGCTGAGACTAGAAGAGGTGTCAGGTCCCCTAGGGCAGGAGTTACAGGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR GCA 72 bp | GCAATTCTCAAACCTGGAGTCCAGGAAGGAAGCATTTaGCAAGCTACTAGACACAAAGCTTCCGGGCTAGGG | + |
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Preference number: 3 (lower is better) Translates to: AILKPGVQEGSI*QATRHKASGLG Trigger: CCCTAGCCCGGAAGCTTTGTGTCTAGTAGCTTGGCAAATGCTTCCTTCCTGGACTCCAGGTTTGAGAATTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR GCA 72 bp | AGGGGACCTGACACCTCTTCTAGTCTCAGCAGGTACTaGACTCACGTGCACAAACCCACACACGTAATTAAA | + |
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Preference number: 3 (lower is better) Translates to: RGPDTSSSLSRY*THVHKPTHVIK Trigger: TTTAATTACGTGTGTGGGTTTGTGCACGTGAGTGCAGTACCTGCTGAGACTAGAAGAGGTGTCAGGTCCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR GCA 72 bp | CCACGTCCTGTGTTCTCTTTCCTCATCAGGAATTCGTaGGGAAAAGAAGTTGACGTCTCAGGACTTTATCTC | + |
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Preference number: 3 (lower is better) Translates to: PRPVFSFLIRNS*GKEVDVSGLYL Trigger: GAGATAAAGTCCTGAGACGTCAACTTCTTTTCCGCACGAATTCCTGATGAGGAAAGAGAACACAGGACGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR CCA 72 bp | TCTGGAGAGAAAGGGGCACCATTCTCTTCTGTTATGTaGCCCAATGGAGTCTTCCTCATAATCCACAAAAGC | + |
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Preference number: 3 (lower is better) Translates to: SGEKGAPFSSVM*PNGVFLIIHKS Trigger: GCTTTTGTGGATTATGAGGAAGACTCCATTGGGCCACATAACAGAAGAGAATGGTGCCCCTTTCTCTCCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR CCA 72 bp | CAAGTCATGGCACCTCCCACAAAACAGAAACGCACTTaGCTGAATAGCCTTAAGGAAAATCTCCAAGGTGAT | + |
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Preference number: 3 (lower is better) Translates to: QVMAPPTKQKRT*LNSLKENLQGD Trigger: ATCACCTTGGAGATTTTCCTTAAGGCTATTCAGCCAAGTGCGTTTCTGTTTTGTGGGAGGTGCCATGACTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR TCA 72 bp | TCATGGCACCTCCCACAAAACAGAAACGCACTTGGCTaGATAGCCTTAAGGAAAATCTCCAAGGTGATAAGA | + |
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Preference number: 3 (lower is better) Translates to: SWHLPQNRNALG*IALRKISKVIR Trigger: TCTTATCACCTTGGAGATTTTCCTTAAGGCTATTCAGCCAAGTGCGTTTCTGTTTTGTGGGAGGTGCCATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR GCA 72 bp | ACTGAGGGAAATAAAGCTTTCAGGTCAGATCCAACTTaGATCATCCACGTCCTGTGTTCTCTTTCCTCATCA | + |
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Preference number: 3 (lower is better) Translates to: TEGNKAFRSDPT*IIHVLCSLSSS Trigger: TGATGAGGAAAGAGAACACAGGACGTGGATGATGCAAGTTGGATCTGACCTGAAAGCTTTATTTCCCTCAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR CCA 72 bp | GCTGTAAAAATATGGGCATTTCATAGATGTTGCAGCTaGGTAGGATTGTCTAATTGCTTCCTCCCTTGGCAG | + |
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Preference number: 3 (lower is better) Translates to: AVKIWAFHRCCS*VGLSNCFLPWQ Trigger: CTGCCAAGGGAGGAAGCAATTAGACAATCCTACCCAGCTGCAACATCTATGAAATGCCCATATTTTTACAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR GCA 72 bp | AAGAAGTTGACGTCTCAGGACTTTATCTCTGGTGTCTaGTTTGTGGGACACAAAATATTTCCAAAATGTGAA | + |
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Preference number: 3 (lower is better) Translates to: KKLTSQDFISGV*FVGHKIFPKCE Trigger: TTCACATTTTGGAAATATTTTGTGTCCCACAAAGCAGACACCAGAGATAAAGTCCTGAGACGTCAACTTCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR TCA 72 bp | TGTTGTGCTGAGACTTTCAAGTTCTTATTAGCAATATaGATCTTGCTTTTCTGGACAGGAAATGAGGCTGAT | + |
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Preference number: 3 (lower is better) Translates to: CCAETFKFLLAI*ILLFWTGNEAD Trigger: ATCAGCCTCATTTCCTGTCCAGAAAAGCAAGATTCATATTGCTAATAAGAACTTGAAAGTCTCAGCACAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097420.7 |
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| CDS-3UTR CCA 90 bp | CCCAGTTGCAGAAGCAGGAACTCTGGAGAGAAAGGGGCACCATTCTCTTCTGTTGCCAGGCTTCCTGCCTaGAGGACAGCTGCTCCCCTG | + |
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Preference number: 4 (lower is better) Translates to: PSCRSRNSGEKGAPFSSVARLPA*RTAAPL Trigger: CAGGGGAGCAGCTGTCCTCCAGGCAGGAAGCCTGGC...AACAGAAGAGAATGGTGCCCCTTTCTCTCCAGAGTTCCTGCTTCTGCAACTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| CDS-3UTR CCA 90 bp | AGGTGCCATAGTATGTGCACCTACACACACACACACACACACACACACACACACGCCAGGCTTCCTGCCTaGAGGACAGCTGCTCCCCTG | + |
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Preference number: 4 (lower is better) Translates to: RCHSMCTYTHTHTHTHTHARLPA*RTAAPL Trigger: CAGGGGAGCAGCTGTCCTCCAGGCAGGAAGCCTGGC...GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTGCACATACTATGGCACCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097420.7 |
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| CDS-3UTR TCA 90 bp | GGCTGTGTGGCAGCCAGCTGGCAGGAACAAGCACAGCAGGACCTACTAATCAGAGTAAGTCCTCCTTGGTaGAGCACAGCTCTATCTGGC | + |
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Preference number: 4 (lower is better) Translates to: GCVAASWQEQAQQDLLIRVSPPW*STALSG Trigger: GCCAGATAGAGCTGTGCTTCACCAAGGAGGACTTAC...TCTGATTAGTAGGTCCTGCTGTGCTTGTTCCTGCCAGCTGGCTGCCACACAGCC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097420.7 |
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| CDS-3UTR CCA 90 bp | TCTGGACAGGAAATGAGGCTGATGACAGCGGCTGTCTGTGGGACAGGAAATGAGCTCCTTGCATACTGTTaGGGGCCAGTGCTGGGTCAA | + |
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Preference number: 4 (lower is better) Translates to: SGQEMRLMTAAVCGTGNELLAYC*GPVLGQ Trigger: TTGACCCAGCACTGGCCCCCAACAGTATGCAAGGAG...CTCATTTCCTGTCCCACAGACAGCCGCTGTCATCAGCCTCATTTCCTGTCCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097420.7 |
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| 3UTR CAA 72 bp | GGGGCAGGCAGGAAGGGTAACCTCTCCGTTAAGCCTTaGCAACACGGAAGCCAAGCAATTCTCAAACCTGGA | + |
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Preference number: 4 (lower is better) Translates to: GAGRKGNLSVKP*QHGSQAILKPG Trigger: TCCAGGTTTGAGAATTGCTTGGCTTCCGTGTTGCAAAGGCTTAACGGAGAGGTTACCCTTCCTGCCTGCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| CDS-3UTR CCA 90 bp | GCAGAGGACCCAAGTTCAGTTCTCAGTACCCACTATCAGACAGCTAACAGCTGCCTCCTTGCATACTGTTaGGGGCCAGTGCTGGGTCAA | + |
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Preference number: 4 (lower is better) Translates to: AEDPSSVLSTHYQTANSCLLAYC*GPVLGQ Trigger: TTGACCCAGCACTGGCCCCCAACAGTATGCAAGGAG...GCAGCTGTTAGCTGTCTGATAGTGGGTACTGAGAACTGAACTTGGGTCCTCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| CDS-3UTR CCA 90 bp | TATGAATCTTGCTTTTCTGGACAGGAAATGAGGCTGATGACAGCGGCTGTCTGTGGACAGCTGCTCCCCTaGCTCAGTGCAGTTCCGCAA | + |
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Preference number: 4 (lower is better) Translates to: YESCFSGQEMRLMTAAVCGQLLP*LSAVPQ Trigger: TTGCGGAACTGCACTGAGCCAGGGGAGCAGCTGTCC...ACAGACAGCCGCTGTCATCAGCCTCATTTCCTGTCCAGAAAAGCAAGATTCATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097420.7 |
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| CDS-3UTR CCA 90 bp | GGCAGCCAGCTGGCAGGAACAAGCACAGCAGGACCTACTAATCAGAGCAGACAATTGGGTCTTTGTAGGTaGAGGGTAGAAGATTGGACC | + |
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Preference number: 4 (lower is better) Translates to: GSQLAGTSTAGPTNQSRQLGLCR*RVEDWT Trigger: GGTCCAATCTTCTACCCTCCACCTACAAAGACCCAA...TTGTCTGCTCTGATTAGTAGGTCCTGCTGTGCTTGTTCCTGCCAGCTGGCTGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097420.7 |
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| CDS-3UTR TCA 90 bp | AGCCTTTGCAACACGGAAGCCAAGCAATTCTCAAACCTGGAGTCCAGGAAGGAAGTAAGTCCTCCTTGGTaGAGCACAGCTCTATCTGGC | + |
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Preference number: 4 (lower is better) Translates to: SLCNTEAKQFSNLESRKEVSPPW*STALSG Trigger: GCCAGATAGAGCTGTGCTTCACCAAGGAGGACTTAC...TTCCTTCCTGGACTCCAGGTTTGAGAATTGCTTGGCTTCCGTGTTGCAAAGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| CDS-3UTR CCA 90 bp | TGGGCATTTCATAGATGTTGCAGCTGGGTAGGATTGTCTAATTGCTTCCTCCCTGCTCTCTCCCTGTTCTaGCATAAGGCACTGGATTTT | + |
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Preference number: 4 (lower is better) Translates to: WAFHRCCSWVGLSNCFLPALSLF*HKALDF Trigger: AAAATCCAGTGCCTTATGCCAGAACAGGGAGAGAGC...AGGGAGGAAGCAATTAGACAATCCTACCCAGCTGCAACATCTATGAAATGCCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| CDS-3UTR TCA 90 bp | AGATGTTGCAGCTGGGTAGGATTGTCTAATTGCTTCCTCCCTTGGCAGCTTATGTTTGTAGCACACTGTTaGGGTCAATCTGCTTGTACA | + |
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Preference number: 4 (lower is better) Translates to: RCCSWVGLSNCFLPWQLMFVAHC*GQSACT Trigger: TGTACAAGCAGATTGACCTCAACAGTGTGCTACAAA...CATAAGCTGCCAAGGGAGGAAGCAATTAGACAATCCTACCCAGCTGCAACATCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| 3UTR CAA 72 bp | AGGGCATTCCTTTTACCATCAGCAACAGTAAAGCTTTaGGGGGTGGCACATTCAACATTCCCAACAATAGCA | + |
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Preference number: 4 (lower is better) Translates to: RAFLLPSATVKL*GVAHSTFPTIA Trigger: TGCTATTGTTGGGAATGTTGAATGTGCCACCCCCAAAAGCTTTACTGTTGCTGATGGTAAAAGGAATGCCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| CDS-3UTR CCA 90 bp | CAGGACCTACTAATCAGAGCAGACAAAAACCAACTCCTTCACACACAAGAAAAAGCTCTCTCCCTGTTCTaGCATAAGGCACTGGATTTT | + |
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Preference number: 4 (lower is better) Translates to: QDLLIRADKNQLLHTQEKALSLF*HKALDF Trigger: AAAATCCAGTGCCTTATGCCAGAACAGGGAGAGAGC...TTTTTCTTGTGTGTGAAGGAGTTGGTTTTTGTCTGCTCTGATTAGTAGGTCCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000097420.7 |
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| CDS-3UTR CCA 90 bp | TGGGTAAATTATAGACTTGTTAGTGCTTGTATTACAGCTCATGGTTTAGCGGTTTTGGGTCTTTGTAGGTaGAGGGTAGAAGATTGGACC | + |
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Preference number: 4 (lower is better) Translates to: WVNYRLVSACITAHGLAVLGLCR*RVEDWT Trigger: GGTCCAATCTTCTACCCTCCACCTACAAAGACCCAA...AACCGCTAAACCATGAGCTGTAATACAAGCACTAACAAGTCTATAATTTACCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231927.2 |
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| CDS-3UTR TCA 90 bp | CCCAAAATTTTTCTCTTACCTCTATATAGGTGCCATAGTATGTGCACCTACACATTTGTAGCACACTGTTaGGGTCAATCTGCTTGTACA | + |
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Preference number: 4 (lower is better) Translates to: PKIFLLPLYRCHSMCTYTFVAHC*GQSACT Trigger: TGTACAAGCAGATTGACCTCAACAGTGTGCTACAAA...TGTGTAGGTGCACATACTATGGCACCTATATAGAGGTAAGAGAAAAATTTTGGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000097420.7 |
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| CDS GCA 90 bp | GTAGAAGCCTCCATGGCCAGCCAGGCTTCCTGCCTGGAGGACAGCTaGTCCCCTGGCTCAGTGCAGTTCCGCAAATGTAAGTCCTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: VEASMASQASCLEDS*SPGSVQFRKCKSSL Trigger: CAAGGAGGACTTACATTTGCGGAACTGCACTGAGCCAGGGGAGCAGCTGTCCTCCAGGCAGGAAGCCTGGCTGGCCATGGAGGCTTCTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097420.7 ENSMUST00000231927.2 |
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| CDS GCA 90 bp | ACCATCATCCCATGTGTAGAAGCCTCCATGGCCAGCCAGGCTTCCTaGCTGGAGGACAGCTGCTCCCCTGGCTCAGTGCAGTTCCGCAAA | + |
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Preference number: 5 (lower is better) Translates to: TIIPCVEASMASQAS*LEDSCSPGSVQFRK Trigger: TTTGCGGAACTGCACTGAGCCAGGGGAGCAGCTGTCCTCCAGGCAGGAAGCCTGGCTGGCCATGGAGGCTTCTACACATGGGATGATGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097420.7 ENSMUST00000231927.2 |
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| CDS GCA 90 bp | ATCTTCATGTCTCGCAAAAGGTCCTTAATCTCATCTAAGTTAAAGTaGCAGGACTGGTTACAATCTTCTGCTCTATCGGGCCATAGTCCA | + |
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Preference number: 5 (lower is better) Translates to: IFMSRKRSLISSKLK*QDWLQSSALSGHSP Trigger: TGGACTATGGCCCGATAGAGCAGAAGATTGTAACCAGTCCTGGCACTTTAACTTAGATGAGATTAAGGACCTTTTGCGAGACATGAAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097420.7 ENSMUST00000231927.2 |
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| CDS CCA 72 bp | CCAAAGTACTTCTTCTCGGAATTGAGGGCGTCTACCTaGGCAGCACAGGTGCCGTGTTTAACCCACTCATGT | + |
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Preference number: 6 (lower is better) Translates to: PKYFFSELRAST*AAQVPCLTHSC Trigger: ACATGAGTGGGTTAAACACGGCACCTGTGCTGCCCAGGTAGACGCCCTCAATTCCGAGAAGAAGTACTTTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097420.7 ENSMUST00000231927.2 |
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| CDS CCA 72 bp | TATCTGGCCAACGGTCTGCACGCTCTCTCCCTGTTCTaGCATAAGGCACTGGATTTTAGGCACCACACCATA | + |
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Preference number: 6 (lower is better) Translates to: YLANGLHALSLF*HKALDFRHHTI Trigger: TATGGTGTGGTGCCTAAAATCCAGTGCCTTATGCCAGAACAGGGAGAGAGCGTGCAGACCGTTGGCCAGATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097420.7 ENSMUST00000231927.2 |
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| CDS CCA 72 bp | TCAATGTTGGGTCTTTGTAGGTGGAGGGTAGAAGATTaGACCGTCTTCACAGACCATCATCCCATGTGTAGA | + |
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Preference number: 6 (lower is better) Translates to: SMLGLCRWRVED*TVFTDHHPMCR Trigger: TCTACACATGGGATGATGGTCTGTGAAGACGGTCCAATCTTCTACCCTCCACCTACAAAGACCCAACATTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097420.7 ENSMUST00000231927.2 |
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| CDS CCA 72 bp | AGGTCCTTAATCTCATCTAAGTTAAAGTGCCAGGACTaGTTACAATCTTCTGCTCTATCGGGCCATAGTCCA | + |
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Preference number: 6 (lower is better) Translates to: RSLISSKLKCQD*LQSSALSGHSP Trigger: TGGACTATGGCCCGATAGAGCAGAAGATTGTAACCAGTCCTGGCACTTTAACTTAGATGAGATTAAGGACCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097420.7 ENSMUST00000231927.2 |
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| CDS GCA 72 bp | CTGGATTTTAGGCACCACACCATAGATTCTGGTAAGTaGATCTTTGAAATCTGCAAGCTGGTAGTAGTTGAT | + |
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Preference number: 6 (lower is better) Translates to: LDFRHHTIDSGK*IFEICKLVVVD Trigger: ATCAACTACTACCAGCTTGCAGATTTCAAAGATGCACTTACCAGAATCTATGGTGTGGTGCCTAAAATCCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097420.7 ENSMUST00000231927.2 |
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