Pregenerated sensors for RNASEK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000093989Ensembl transcript IDs: ENSMUST00000040428.4, ENSMUST00000125752.3, ENSMUST00000141880.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGGAGTCCGCAAATTTGCCCGAGCTGGCTCCCATTCCCAGGGTCCTaGCCCAGCACCCTTTCGCTCCAGTTCCCCAGTTGTCTGGATCTG | + |
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Preference number: 1 (lower is better) Translates to: GSPQICPSWLPFPGS*PSTLSLQFPSCLDL Trigger: CAGATCCAGACAACTGGGGAACTGGAGCGAAAGGGTGCTGGGGCAGGACCCTGGGAATGGGAGCCAGCTCGGGCAAATTTGCGGACTCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125752.3 |
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| 3UTR CCA 90 bp | AAATCTTTCTCTGTGAAGGGAACGTCCTCAATTAACACAGCAGAATaGACATTGAAAAATATCCCGAGCATTATCTTGGGGAGTCCGCAA | + |
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Preference number: 1 (lower is better) Translates to: KSFSVKGTSSINTAE*TLKNIPSIILGSPQ Trigger: TTGCGGACTCCCCAAGATAATGCTCGGGATATTTTTCAATGTCCATTCTGCTGTGTTAATTGAGGACGTTCCCTTCACAGAGAAAGATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000125752.3 |
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| 3UTR-3UTR CCA 90 bp | CTCGCTAGGGTCACAAGTCCCAAAGGACGCCAGATGAGTGGGACGGAGTCTGCGAATAGAGAAGGGGGCTaGGGAGGGAGAGGCGGACCG | + |
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Preference number: 2 (lower is better) Translates to: LARVTSPKGRQMSGTESANREGG*GGRGGP Trigger: CGGTCCGCCTCTCCCTCCCCAGCCCCCTTCTCTATT...CGCAGACTCCGTCCCACTCATCTGGCGTCCTTTGGGACTTGTGACCCTAGCGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000040428.4 ENSMUST00000125752.3 ENSMUST00000141880.2 |
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| 3UTR-3UTR GCA 90 bp | GTCACAAGTCCCAAAGGACGCCAGATGAGTGGGACGGAGTCTGCGGAGTCTTTACCATTCCCAGGGTCCTaGCCCAGCACCCTTTCGCTC | + |
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Preference number: 2 (lower is better) Translates to: VTSPKGRQMSGTESAESLPFPGS*PSTLSL Trigger: GAGCGAAAGGGTGCTGGGGCAGGACCCTGGGAATGG...TAAAGACTCCGCAGACTCCGTCCCACTCATCTGGCGTCCTTTGGGACTTGTGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125752.3 |
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| 3UTR-3UTR CCA 90 bp | GTCACAAGTCCCAAAGGACGCCAGATGAGTGGGACGGAGTCTGCGGAGTCTTTAAATAGAGAAGGGGGCTaGGGAGGGAGAGGCGGACCG | + |
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Preference number: 2 (lower is better) Translates to: VTSPKGRQMSGTESAESLNREGG*GGRGGP Trigger: CGGTCCGCCTCTCCCTCCCCAGCCCCCTTCTCTATT...TAAAGACTCCGCAGACTCCGTCCCACTCATCTGGCGTCCTTTGGGACTTGTGAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000040428.4 ENSMUST00000125752.3 ENSMUST00000141880.2 |
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| 3UTR CAA 90 bp | GAGGAGGAGGTAGAGGCCCGCGGCGATGAAACAGTTGTAGCTGACTaGCTCGTACAGGTTGTATATGTTCTGAGGACCGTTCTCAAAATC | + |
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Preference number: 2 (lower is better) Translates to: EEEVEARGDETVVAD*LVQVVYVLRTVLKI Trigger: GATTTTGAGAACGGTCCTCAGAACATATACAACCTGTACGAGCAAGTCAGCTACAACTGTTTCATCGCCGCGGGCCTCTACCTCCTCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125752.3 |
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| 3UTR-3UTR TCA 90 bp | ATGAGTGGGACGGAGTCTGCGGAGTCTTTAAATAGAGAAGGGGGCTGGGGAGGGCAAAATCTTTCTCTGTaGAGGGAACGTCCTCAATTA | + |
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Preference number: 2 (lower is better) Translates to: MSGTESAESLNREGGWGGQNLSL*RERPQL Trigger: TAATTGAGGACGTTCCCTTCACAGAGAAAGATTTTG...CCCTCCCCAGCCCCCTTCTCTATTTAAAGACTCCGCAGACTCCGTCCCACTCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000125752.3 |
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| 3UTR CAA 90 bp | ATTAACACAGCAGAATGGACATTGAAAAATATCCCGAGCATTATCTaGGGGAGTCCGCAAATTTGCCCGAGCTGGCTCCCATTCCCAGGG | + |
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Preference number: 2 (lower is better) Translates to: INTAEWTLKNIPSII*GSPQICPSWLPFPG Trigger: CCCTGGGAATGGGAGCCAGCTCGGGCAAATTTGCGGACTCCCCAAGATAATGCTCGGGATATTTTTCAATGTCCATTCTGCTGTGTTAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000125752.3 |
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| 3UTR CAA 90 bp | TTCTCTGTGAAGGGAACGTCCTCAATTAACACAGCAGAATGGACATaGAAAAATATCCCGAGCATTATCTTGGGGAGTCCGCAAATTTGC | + |
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Preference number: 2 (lower is better) Translates to: FSVKGTSSINTAEWT*KNIPSIILGSPQIC Trigger: GCAAATTTGCGGACTCCCCAAGATAATGCTCGGGATATTTTTCAATGTCCATTCTGCTGTGTTAATTGAGGACGTTCCCTTCACAGAGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000125752.3 |
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| 3UTR GCA 72 bp | CAAATTTGCCCGAGCTGGCTCCCATTCCCAGGGTCCTaGCCCAGCACCCTTTCGCTCCAGTTCCCCAGTTGT | + |
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Preference number: 3 (lower is better) Translates to: QICPSWLPFPGS*PSTLSLQFPSC Trigger: ACAACTGGGGAACTGGAGCGAAAGGGTGCTGGGGCAGGACCCTGGGAATGGGAGCCAGCTCGGGCAAATTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125752.3 |
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| 3UTR CCA 72 bp | AGCATTATCTTGGGGAGTCCGCAAATTTGCCCGAGCTaGCTCCCATTCCCAGGGTCCTGCCCCAGCACCCTT | + |
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Preference number: 3 (lower is better) Translates to: SIILGSPQICPS*LPFPGSCPSTL Trigger: AAGGGTGCTGGGGCAGGACCCTGGGAATGGGAGCCAGCTCGGGCAAATTTGCGGACTCCCCAAGATAATGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125752.3 |
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| 3UTR GCA 72 bp | AATATCCCGAGCATTATCTTGGGGAGTCCGCAAATTTaGCCGAGCTGGCTCCCATTCCCAGGGTCCTGCCCC | + |
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Preference number: 3 (lower is better) Translates to: NIPSIILGSPQI*PSWLPFPGSCP Trigger: GGGGCAGGACCCTGGGAATGGGAGCCAGCTCGGGCAAATTTGCGGACTCCCCAAGATAATGCTCGGGATATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125752.3 |
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| 3UTR GCA 72 bp | GTCAGCCCCTTAATCAGTCTGCTGCTTCCTAAGGCTTaGGGTTCCTCGTGTCCCAGCCCTTCAACCCCAGAA | + |
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Preference number: 3 (lower is better) Translates to: VSPLISLLLPKA*GSSCPSPSTPE Trigger: TTCTGGGGTTGAAGGGCTGGGACACGAGGAACCGCAAGCCTTAGGAAGCAGCAGACTGATTAAGGGGCTGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125752.3 |
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| 3UTR-3UTR CAA 90 bp | ATGAGTGGGACGGAGTCTGCGGAGTCTTTAAATAGAGAAGGGGGCTGGGGAGGGTATTCCTTGCGCTTGTaGAGACGAACTTGGCAGAAG | + |
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Preference number: 3 (lower is better) Translates to: MSGTESAESLNREGGWGGYSLRL*RRTWQK Trigger: CTTCTGCCAAGTTCGTCTCAACAAGCGCAAGGAATA...CCCTCCCCAGCCCCCTTCTCTATTTAAAGACTCCGCAGACTCCGTCCCACTCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000125752.3 |
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| 3UTR TCA 72 bp | ATATGTTCTGAGGACCGTTCTCAAAATCTTTCTCTGTaGAGGGAACGTCCTCAATTAACACAGCAGAATGGA | + |
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Preference number: 3 (lower is better) Translates to: ICSEDRSQNLSL*RERPQLTQQNG Trigger: TCCATTCTGCTGTGTTAATTGAGGACGTTCCCTTCACAGAGAAAGATTTTGAGAACGGTCCTCAGAACATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125752.3 |
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| CDS-3UTR TCA 90 bp | GTCCGCAAATTTGCCCGAGCTGGCTCCCATTCCCAGGGTCCTGCCCCAGCACCCTCACTCCCCAGGCGCTaGGGACGATGCCACAGGCGG | + |
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Preference number: 4 (lower is better) Translates to: VRKFARAGSHSQGPAPAPSLPRR*GRCHRR Trigger: CCGCCTGTGGCATCGTCCTCAGCGCCTGGGGAGTGA...GGGTGCTGGGGCAGGACCCTGGGAATGGGAGCCAGCTCGGGCAAATTTGCGGAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000125752.3 |
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| CDS-3UTR TCA 90 bp | ACAAGTCCCAAAGGACGCCAGATGAGTGGGACGGAGTCTGCGGAGTCTTTAAATTCACTCCCCAGGCGCTaGGGACGATGCCACAGGCGG | + |
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Preference number: 4 (lower is better) Translates to: TSPKGRQMSGTESAESLNSLPRR*GRCHRR Trigger: CCGCCTGTGGCATCGTCCTCAGCGCCTGGGGAGTGA...ATTTAAAGACTCCGCAGACTCCGTCCCACTCATCTGGCGTCCTTTGGGACTTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040428.4 ENSMUST00000125752.3 |
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| CDS-3UTR TCA 90 bp | CTCGCTAGGGTCACAAGTCCCAAAGGACGCCAGATGAGTGGGACGGAGTCTGCGATTCCTTGCGCTTGTTaGGACGAACTTGGCAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: LARVTSPKGRQMSGTESAIPCAC*DELGRR Trigger: CCTTCTGCCAAGTTCGTCTCAACAAGCGCAAGGAAT...CGCAGACTCCGTCCCACTCATCTGGCGTCCTTTGGGACTTGTGACCCTAGCGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040428.4 ENSMUST00000141880.2 |
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| CDS-3UTR CCA 90 bp | ATGAGTGGGACGGAGTCTGCGGAGTCTTTAAATAGAGAAGGGGGCTGGGGAGGGTTGTTGAGACGAACTTaGCAGAAGGAGAAGCCTCCG | + |
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Preference number: 4 (lower is better) Translates to: MSGTESAESLNREGGWGGLLRRT*QKEKPP Trigger: CGGAGGCTTCTCCTTCTGCCAAGTTCGTCTCAACAA...CCCTCCCCAGCCCCCTTCTCTATTTAAAGACTCCGCAGACTCCGTCCCACTCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040428.4 ENSMUST00000141880.2 |
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| CDS-3UTR TCA 90 bp | AGGGTCACAAGTCCCAAAGGACGCCAGATGAGTGGGACGGAGTCTGCGGAGTCTCAAAATCTTTCTCTGTaGAGGGAACGTCCTCAATTA | + |
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Preference number: 4 (lower is better) Translates to: RVTSPKGRQMSGTESAESQNLSL*RERPQL Trigger: TAATTGAGGACGTTCCCTTCACAGAGAAAGATTTTG...AGACTCCGCAGACTCCGTCCCACTCATCTGGCGTCCTTTGGGACTTGTGACCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040428.4 ENSMUST00000141880.2 |
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| CDS-3UTR TCA 90 bp | AGTCCCAAAGGACGCCAGATGAGTGGGACGGAGTCTGCGGAGTCTTTAAATAGAATTCCTTGCGCTTGTTaGGACGAACTTGGCAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: SPKGRQMSGTESAESLNRIPCAC*DELGRR Trigger: CCTTCTGCCAAGTTCGTCTCAACAAGCGCAAGGAAT...TCTATTTAAAGACTCCGCAGACTCCGTCCCACTCATCTGGCGTCCTTTGGGACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040428.4 ENSMUST00000141880.2 |
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| CDS-3UTR CCA 90 bp | ACAAGTCCCAAAGGACGCCAGATGAGTGGGACGGAGTCTGCGGAGTCTTTAAATTTGTTGAGACGAACTTaGCAGAAGGAGAAGCCTCCG | + |
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Preference number: 4 (lower is better) Translates to: TSPKGRQMSGTESAESLNLLRRT*QKEKPP Trigger: CGGAGGCTTCTCCTTCTGCCAAGTTCGTCTCAACAA...ATTTAAAGACTCCGCAGACTCCGTCCCACTCATCTGGCGTCCTTTGGGACTTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040428.4 ENSMUST00000141880.2 |
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| 3UTR CAA 72 bp | GTAGAGGCCCGCGGCGATGAAACAGTTGTAGCTGACTaGCTCGTACAGGTTGTATATGTTCTGAGGACCGTT | + |
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Preference number: 4 (lower is better) Translates to: VEARGDETVVAD*LVQVVYVLRTV Trigger: AACGGTCCTCAGAACATATACAACCTGTACGAGCAAGTCAGCTACAACTGTTTCATCGCCGCGGGCCTCTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125752.3 |
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| CDS-3UTR TCA 90 bp | ATGAGTGGGACGGAGTCTGCGGAGTCTTTAAATAGAGAAGGGGGCTGGGGAGGGAGGTTGTATATGTTCTaGGGACCGTTCTCAAAATCT | + |
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Preference number: 4 (lower is better) Translates to: MSGTESAESLNREGGWGGRLYMF*GPFSKS Trigger: AGATTTTGAGAACGGTCCTCAGAACATATACAACCT...CCCTCCCCAGCCCCCTTCTCTATTTAAAGACTCCGCAGACTCCGTCCCACTCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000040428.4 ENSMUST00000141880.2 |
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| 3UTR CAA 72 bp | GCAGAATGGACATTGAAAAATATCCCGAGCATTATCTaGGGGAGTCCGCAAATTTGCCCGAGCTGGCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: AEWTLKNIPSII*GSPQICPSWLP Trigger: TGGGAGCCAGCTCGGGCAAATTTGCGGACTCCCCAAGATAATGCTCGGGATATTTTTCAATGTCCATTCTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000125752.3 |
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| CDS-3UTR TCA 90 bp | ACAAGTCCCAAAGGACGCCAGATGAGTGGGACGGAGTCTGCGGAGTCTTTAAATCAGCAGAATGGACATTaGAAAATATCCCGAGCATTA | + |
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Preference number: 4 (lower is better) Translates to: TSPKGRQMSGTESAESLNQQNGH*KISRAL Trigger: TAATGCTCGGGATATTTTTCAATGTCCATTCTGCTG...ATTTAAAGACTCCGCAGACTCCGTCCCACTCATCTGGCGTCCTTTGGGACTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040428.4 |
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| CDS-3UTR TCA 90 bp | AGTCCCAAAGGACGCCAGATGAGTGGGACGGAGTCTGCGGAGTCTTTAAATAGACAAAATCTTTCTCTGTaGAGGGAACGTCCTCAATTA | + |
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Preference number: 4 (lower is better) Translates to: SPKGRQMSGTESAESLNRQNLSL*RERPQL Trigger: TAATTGAGGACGTTCCCTTCACAGAGAAAGATTTTG...TCTATTTAAAGACTCCGCAGACTCCGTCCCACTCATCTGGCGTCCTTTGGGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040428.4 ENSMUST00000141880.2 |
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| 3UTR CAA 72 bp | AAGGGAACGTCCTCAATTAACACAGCAGAATGGACATaGAAAAATATCCCGAGCATTATCTTGGGGAGTCCG | + |
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Preference number: 4 (lower is better) Translates to: KGTSSINTAEWT*KNIPSIILGSP Trigger: CGGACTCCCCAAGATAATGCTCGGGATATTTTTCAATGTCCATTCTGCTGTGTTAATTGAGGACGTTCCCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000125752.3 |
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| CDS-3UTR CAA 90 bp | CTCGCTAGGGTCACAAGTCCCAAAGGACGCCAGATGAGTGGGACGGAGTCTGCGCTTGTTGAGACGAACTaGGCAGAAGGAGAAGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: LARVTSPKGRQMSGTESALVETN*AEGEAS Trigger: GGAGGCTTCTCCTTCTGCCAAGTTCGTCTCAACAAG...CGCAGACTCCGTCCCACTCATCTGGCGTCCTTTGGGACTTGTGACCCTAGCGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040428.4 ENSMUST00000141880.2 |
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| CDS-3UTR CAA 90 bp | CGTCTCGCTAGGGTCACAAGTCCCAAAGGACGCCAGATGAGTGGGACGGAGTCTCTTGTTGAGACGAACTaGGCAGAAGGAGAAGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: RLARVTSPKGRQMSGTESLVETN*AEGEAS Trigger: GGAGGCTTCTCCTTCTGCCAAGTTCGTCTCAACAAG...AGACTCCGTCCCACTCATCTGGCGTCCTTTGGGACTTGTGACCCTAGCGAGACG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040428.4 ENSMUST00000141880.2 |
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| CDS-3UTR CAA 90 bp | CTCGCTAGGGTCACAAGTCCCAAAGGACGCCAGATGAGTGGGACGGAGTCTGCGCGCACCATGTATTCCTaGCGCTTGTTGAGACGAACT | + |
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Preference number: 5 (lower is better) Translates to: LARVTSPKGRQMSGTESARTMYS*RLLRRT Trigger: AGTTCGTCTCAACAAGCGCAAGGAATACATGGTGCG...CGCAGACTCCGTCCCACTCATCTGGCGTCCTTTGGGACTTGTGACCCTAGCGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040428.4 ENSMUST00000141880.2 |
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| CDS-3UTR CAA 90 bp | CTCGCTAGGGTCACAAGTCCCAAAGGACGCCAGATGAGTGGGACGGAGTCTGCGTATTCCTTGCGCTTGTaGAGACGAACTTGGCAGAAG | + |
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Preference number: 5 (lower is better) Translates to: LARVTSPKGRQMSGTESAYSLRL*RRTWQK Trigger: CTTCTGCCAAGTTCGTCTCAACAAGCGCAAGGAATA...CGCAGACTCCGTCCCACTCATCTGGCGTCCTTTGGGACTTGTGACCCTAGCGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040428.4 ENSMUST00000141880.2 |
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| CDS-3UTR CAA 90 bp | ATGAGTGGGACGGAGTCTGCGGAGTCTTTAAATAGAGAAGGGGGCTGGGGAGGGATGTATTCCTTGCGCTaGTTGAGACGAACTTGGCAG | + |
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Preference number: 5 (lower is better) Translates to: MSGTESAESLNREGGWGGMYSLR*LRRTWQ Trigger: CTGCCAAGTTCGTCTCAACAAGCGCAAGGAATACAT...CCCTCCCCAGCCCCCTTCTCTATTTAAAGACTCCGCAGACTCCGTCCCACTCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040428.4 ENSMUST00000141880.2 |
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| CDS-3UTR CAA 90 bp | AGGGTCACAAGTCCCAAAGGACGCCAGATGAGTGGGACGGAGTCTGCGGAGTCTACAGTTGTAGCTGACTaGCTCGTACAGGTTGTATAT | + |
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Preference number: 5 (lower is better) Translates to: RVTSPKGRQMSGTESAESTVVAD*LVQVVY Trigger: ATATACAACCTGTACGAGCAAGTCAGCTACAACTGT...AGACTCCGCAGACTCCGTCCCACTCATCTGGCGTCCTTTGGGACTTGTGACCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040428.4 ENSMUST00000141880.2 |
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| CDS-3UTR CAA 90 bp | CGTCTCGCTAGGGTCACAAGTCCCAAAGGACGCCAGATGAGTGGGACGGAGTCTACAGTTGTAGCTGACTaGCTCGTACAGGTTGTATAT | + |
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Preference number: 5 (lower is better) Translates to: RLARVTSPKGRQMSGTESTVVAD*LVQVVY Trigger: ATATACAACCTGTACGAGCAAGTCAGCTACAACTGT...AGACTCCGTCCCACTCATCTGGCGTCCTTTGGGACTTGTGACCCTAGCGAGACG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040428.4 ENSMUST00000141880.2 |
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| CDS-3UTR CAA 90 bp | ACAAGTCCCAAAGGACGCCAGATGAGTGGGACGGAGTCTGCGGAGTCTTTAAATCGCACCATGTATTCCTaGCGCTTGTTGAGACGAACT | + |
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Preference number: 5 (lower is better) Translates to: TSPKGRQMSGTESAESLNRTMYS*RLLRRT Trigger: AGTTCGTCTCAACAAGCGCAAGGAATACATGGTGCG...ATTTAAAGACTCCGCAGACTCCGTCCCACTCATCTGGCGTCCTTTGGGACTTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040428.4 ENSMUST00000141880.2 |
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| CDS-3UTR CAA 90 bp | ATGAGTGGGACGGAGTCTGCGGAGTCTTTAAATAGAGAAGGGGGCTGGGGAGGGACAGCAGAATGGACATaGAAAAATATCCCGAGCATT | + |
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Preference number: 5 (lower is better) Translates to: MSGTESAESLNREGGWGGTAEWT*KNIPSI Trigger: AATGCTCGGGATATTTTTCAATGTCCATTCTGCTGT...CCCTCCCCAGCCCCCTTCTCTATTTAAAGACTCCGCAGACTCCGTCCCACTCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000040428.4 |
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| CDS-3UTR CAA 90 bp | AGTCCCAAAGGACGCCAGATGAGTGGGACGGAGTCTGCGGAGTCTTTAAATAGAATGTATTCCTTGCGCTaGTTGAGACGAACTTGGCAG | + |
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Preference number: 5 (lower is better) Translates to: SPKGRQMSGTESAESLNRMYSLR*LRRTWQ Trigger: CTGCCAAGTTCGTCTCAACAAGCGCAAGGAATACAT...TCTATTTAAAGACTCCGCAGACTCCGTCCCACTCATCTGGCGTCCTTTGGGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040428.4 ENSMUST00000141880.2 |
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| CDS CCA 90 bp | AAATCTTTCTCTGTGAAGGGAACGTCCTCAATTAACACAGCAGAATaGACATTGAAAAATATCCCGAGCATTATCAACATGATCACTCCC | + |
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Preference number: 5 (lower is better) Translates to: KSFSVKGTSSINTAE*TLKNIPSIINMITP Trigger: GGGAGTGATCATGTTGATAATGCTCGGGATATTTTTCAATGTCCATTCTGCTGTGTTAATTGAGGACGTTCCCTTCACAGAGAAAGATTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040428.4 |
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| CDS CAA 90 bp | TTCTCTGTGAAGGGAACGTCCTCAATTAACACAGCAGAATGGACATaGAAAAATATCCCGAGCATTATCAACATGATCACTCCCCAGGCG | + |
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Preference number: 6 (lower is better) Translates to: FSVKGTSSINTAEWT*KNIPSIINMITPQA Trigger: CGCCTGGGGAGTGATCATGTTGATAATGCTCGGGATATTTTTCAATGTCCATTCTGCTGTGTTAATTGAGGACGTTCCCTTCACAGAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040428.4 |
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