Pregenerated sensors for RNASEH2C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024925Ensembl transcript IDs: ENSMUST00000025864.11, ENSMUST00000136226.2, ENSMUST00000155639.2, ENSMUST00000236461.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CATCCTTTATTCCCAGCATTCAGGAAGCGGAAGCAGGTGGGTCTCTaGTGGTTTATAGGGAGTTCCAGGCCAGCCAGGGCTAATACAGTC | + |
|
Preference number: 1 (lower is better) Translates to: HPLFPAFRKRKQVGL*WFIGSSRPARANTV Trigger: GACTGTATTAGCCCTGGCTGGCCTGGAACTCCCTATAAACCAGCAGAGACCCACCTGCTTCCGCTTCCTGAATGCTGGGAATAAAGGATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236461.2 |
||
| 3UTR CCA 90 bp | GCTCCAAGTGGTGAGAAGGGATCTGTGACTGTCATTCTCATGATCTaGTTCTCAGTCCTCAGGGACCTGGGCGTGAATCTGCAACAGGAG | + |
|
Preference number: 1 (lower is better) Translates to: APSGEKGSVTVILMI*FSVLRDLGVNLQQE Trigger: CTCCTGTTGCAGATTCACGCCCAGGTCCCTGAGGACTGAGAACCAGATCATGAGAATGACAGTCACAGATCCCTTCTCACCACTTGGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000136226.2 ENSMUST00000155639.2 |
||
| 3UTR CCA 90 bp | CCTTTATTCCCAGCATTCAGGAAGCGGAAGCAGGTGGGTCTCTGCTaGTTTATAGGGAGTTCCAGGCCAGCCAGGGCTAATACAGTCAGA | + |
|
Preference number: 1 (lower is better) Translates to: PLFPAFRKRKQVGLC*FIGSSRPARANTVR Trigger: TCTGACTGTATTAGCCCTGGCTGGCCTGGAACTCCCTATAAACCAGCAGAGACCCACCTGCTTCCGCTTCCTGAATGCTGGGAATAAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236461.2 |
||
| 3UTR TCA 90 bp | TGTGAAGATCTCATTTATTGGGATAGAAACAGTCGCTCCAAGTGGTaGGAAGGGATCTGTGACTGTCATTCTCATGATCTGGTTCTCAGT | + |
|
Preference number: 1 (lower is better) Translates to: CEDLIYWDRNSRSKW*EGICDCHSHDLVLS Trigger: ACTGAGAACCAGATCATGAGAATGACAGTCACAGATCCCTTCTCACCACTTGGAGCGACTGTTTCTATCCCAATAAATGAGATCTTCACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136226.2 |
||
| 3UTR-3UTR CCA 90 bp | ACCCAAGAGGAGAAGAGGCCTAGGAGGGGCCCACTAGTGGCCAGTGCCAAGGCAGGAGGAGCTGGAGGGTaGGGTGGGCGCTGGTTGCAA | + |
|
Preference number: 2 (lower is better) Translates to: TQEEKRPRRGPLVASAKAGGAGG*GGRWLQ Trigger: TTGCAACCAGCGCCCACCCCACCCTCCAGCTCCTCC...TGCCTTGGCACTGGCCACTAGTGGGCCCCTCCTAGGCCTCTTCTCCTCTTGGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025864.11 |
||
| 3UTR-3UTR CCA 90 bp | AGTGGCCAGTGCCAAGGCAAGCTCAGGTCTAGGCCAACTCCGAGGATAACTGGCGGGTGGGGTGGGCGCTaGTTGCAAAGTTCTGGCCCC | + |
|
Preference number: 2 (lower is better) Translates to: SGQCQGKLRSRPTPRITGGWGGR*LQSSGP Trigger: GGGGCCAGAACTTTGCAACCAGCGCCCACCCCACCC...GCCAGTTATCCTCGGAGTTGGCCTAGACCTGAGCTTGCCTTGGCACTGGCCACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025864.11 |
||
| 3UTR-3UTR TCA 90 bp | GAGGGGCCCACTAGTGGCCAGTGCCAAGGCAAGCTCAGGTCTAGGCCAACTCCGAGTCGCTCCAAGTGGTaGGAAGGGATCTGTGACTGT | + |
|
Preference number: 2 (lower is better) Translates to: EGPTSGQCQGKLRSRPTPSRSKW*EGICDC Trigger: ACAGTCACAGATCCCTTCTCACCACTTGGAGCGACT...CGGAGTTGGCCTAGACCTGAGCTTGCCTTGGCACTGGCCACTAGTGGGCCCCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025864.11 |
||
| 3UTR-3UTR GCA 90 bp | AAGAGGCCTAGGAGGGGCCCACTAGTGGCCAGTGCCAAGGCAAGCTCAGGTCTATTCAGGGTGCTAAGGTaGCCACAGACTCAGGCATTG | + |
|
Preference number: 2 (lower is better) Translates to: KRPRRGPLVASAKASSGLFRVLR*PQTQAL Trigger: CAATGCCTGAGTCTGTGGGCACCTTAGCACCCTGAA...TAGACCTGAGCTTGCCTTGGCACTGGCCACTAGTGGGCCCCTCCTAGGCCTCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025864.11 |
||
| 3UTR-3UTR CCA 90 bp | TGGTTCTCAGTCCTCAGGGACCTGGGCGTGAATCTGCAACAGGAGTCACTTCTACCACCACTGGGAGTTTaGGCCTCCGGAGCCATGATC | + |
|
Preference number: 2 (lower is better) Translates to: WFSVLRDLGVNLQQESLLPPLGV*ASGAMI Trigger: GATCATGGCTCCGGAGGCCCAAACTCCCAGTGGTGG...TAGAAGTGACTCCTGTTGCAGATTCACGCCCAGGTCCCTGAGGACTGAGAACCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155639.2 |
||
| 3UTR-3UTR CCA 90 bp | AGTGGCCAGTGCCAAGGCAAGCTCAGGTCTAGGCCAACTCCGAGGATAACTGGCCTGTGTACATTAAGATaGGTGGGGAGCATTCTGTAC | + |
|
Preference number: 2 (lower is better) Translates to: SGQCQGKLRSRPTPRITGLCTLR*VGSILY Trigger: GTACAGAATGCTCCCCACCCATCTTAATGTACACAG...GCCAGTTATCCTCGGAGTTGGCCTAGACCTGAGCTTGCCTTGGCACTGGCCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025864.11 |
||
| 3UTR-3UTR TCA 90 bp | TCAGTCCTCAGGGACCTGGGCGTGAATCTGCAACAGGAGTCACTTCTACTTTGTAGTCGCTCCAAGTGGTaGGAAGGGATCTGTGACTGT | + |
|
Preference number: 2 (lower is better) Translates to: SVLRDLGVNLQQESLLLCSRSKW*EGICDC Trigger: ACAGTCACAGATCCCTTCTCACCACTTGGAGCGACT...ACAAAGTAGAAGTGACTCCTGTTGCAGATTCACGCCCAGGTCCCTGAGGACTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155639.2 |
||
| 3UTR-3UTR TCA 90 bp | GAAACAGTCGCTCCAAGTGGTGAGAAGGGATCTGTGACTGTCATTCTCATGATCAGTCGCTCCAAGTGGTaGGAAGGGATCTGTGACTGT | + |
|
Preference number: 2 (lower is better) Translates to: ETVAPSGEKGSVTVILMISRSKW*EGICDC Trigger: ACAGTCACAGATCCCTTCTCACCACTTGGAGCGACT...GATCATGAGAATGACAGTCACAGATCCCTTCTCACCACTTGGAGCGACTGTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025864.11 ENSMUST00000136226.2 ENSMUST00000155639.2 |
||
| 3UTR-3UTR CCA 90 bp | AGAGGCACGCAAAGTGAGACAGGCCGAAGAACAGACCCAAGAGGAGAAGAGGCCGAAGATCTCATTTATTaGGATAGAAACAGTCGCTCC | + |
|
Preference number: 2 (lower is better) Translates to: RGTQSETGRRTDPRGEEAEDLIY*DRNSRS Trigger: GGAGCGACTGTTTCTATCCCAATAAATGAGATCTTC...GGCCTCTTCTCCTCTTGGGTCTGTTCTTCGGCCTGTCTCACTTTGCGTGCCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025864.11 |
||
| 3UTR-3UTR CCA 90 bp | GAAACAGTCGCTCCAAGTGGTGAGAAGGGATCTGTGACTGTCATTCTCATGATCATAATACACAGCAGTTaGGTGGGGACCCAGCTGCTC | + |
|
Preference number: 2 (lower is better) Translates to: ETVAPSGEKGSVTVILMIIIHSS*VGTQLL Trigger: GAGCAGCTGGGTCCCCACCCAACTGCTGTGTATTAT...GATCATGAGAATGACAGTCACAGATCCCTTCTCACCACTTGGAGCGACTGTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155639.2 |
||
| 3UTR-3UTR TCA 90 bp | TCCTTTATTCCCAGCATTCAGGAAGCGGAAGCAGGTGGGTCTCTGCTGGTTTATCAGTCAGATCTGCTTTaGAATAGTTTGCAGGTTAAC | + |
|
Preference number: 2 (lower is better) Translates to: SFIPSIQEAEAGGSLLVYQSDLL*NSLQVN Trigger: GTTAACCTGCAAACTATTTCAAAGCAGATCTGACTG...ATAAACCAGCAGAGACCCACCTGCTTCCGCTTCCTGAATGCTGGGAATAAAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236461.2 |
||
| 3UTR-3UTR CCA 90 bp | TGCAACAGGAGTCACTTCTACTTTGTGACTTATAATACACAGCAGTTGGGTGGGGTCATTCTCATGATCTaGTTCTCAGTCCTCAGGGAC | + |
|
Preference number: 2 (lower is better) Translates to: CNRSHFYFVTYNTQQLGGVILMI*FSVLRD Trigger: GTCCCTGAGGACTGAGAACCAGATCATGAGAATGAC...CCCACCCAACTGCTGTGTATTATAAGTCACAAAGTAGAAGTGACTCCTGTTGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155639.2 |
||
| 3UTR TCA 72 bp | TCCGAGGATAACTGGCTTACTGGCCCAGGTCCGCTCTaGACACGTGGACCAAAGGGATCCAGGCAGCTGTGT | + |
|
Preference number: 3 (lower is better) Translates to: SEDNWLTGPGPL*TRGPKGSRQLC Trigger: ACACAGCTGCCTGGATCCCTTTGGTCCACGTGTTCAGAGCGGACCTGGGCCAGTAAGCCAGTTATCCTCGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025864.11 |
||
| 3UTR GCA 72 bp | TTCCCAGCATTCAGGAAGCGGAAGCAGGTGGGTCTCTaGTGGTTTATAGGGAGTTCCAGGCCAGCCAGGGCT | + |
|
Preference number: 3 (lower is better) Translates to: FPAFRKRKQVGL*WFIGSSRPARA Trigger: AGCCCTGGCTGGCCTGGAACTCCCTATAAACCAGCAGAGACCCACCTGCTTCCGCTTCCTGAATGCTGGGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236461.2 |
||
| 3UTR CCA 72 bp | CCAGCATTCAGGAAGCGGAAGCAGGTGGGTCTCTGCTaGTTTATAGGGAGTTCCAGGCCAGCCAGGGCTAAT | + |
|
Preference number: 3 (lower is better) Translates to: PAFRKRKQVGLC*FIGSSRPARAN Trigger: ATTAGCCCTGGCTGGCCTGGAACTCCCTATAAACCAGCAGAGACCCACCTGCTTCCGCTTCCTGAATGCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236461.2 |
||
| 3UTR GCA 72 bp | GAGCAAGAGAGGAAAGTGGTGACACACACTACCCATTaGCATACCACGAGAGCTGGCCGAACCATGGCTAGC | + |
|
Preference number: 3 (lower is better) Translates to: EQERKVVTHTTH*HTTRAGRTMAS Trigger: GCTAGCCATGGTTCGGCCAGCTCTCGTGGTATGGCAATGGGTAGTGTGTGTCACCACTTTCCTCTCTTGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025864.11 |
||
| 3UTR-3UTR CAA 90 bp | ATAGAAACAGTCGCTCCAAGTGGTGAGAAGGGATCTGTGACTGTCATTCTCATGCCCACCACTGGGAGTTaGGGCCTCCGGAGCCATGAT | + |
|
Preference number: 3 (lower is better) Translates to: IETVAPSGEKGSVTVILMPTTGS*GLRSHD Trigger: ATCATGGCTCCGGAGGCCCAAACTCCCAGTGGTGGG...CATGAGAATGACAGTCACAGATCCCTTCTCACCACTTGGAGCGACTGTTTCTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155639.2 |
||
| CDS-3UTR TCA 90 bp | TGGCCCAGGTCCGCTCTGAACACGTGGACCAAAGGGATCCAGGCAGCTGTGTACTCAGGGACCTGGGCGTaGATCGCTGCTGCGAGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: WPRSALNTWTKGIQAAVYSGTWA*IAAARL Trigger: CAGCCTCGCAGCAGCGATTCACGCCCAGGTCCCTGA...GTACACAGCTGCCTGGATCCCTTTGGTCCACGTGTTCAGAGCGGACCTGGGCCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025864.11 |
||
| CDS-3UTR GCA 90 bp | AGAGGCACGCAAAGTGAGACAGGCCGAAGAACAGACCCAAGAGGAGAAGAGGCCCTGGGCGTGAATCGCTaGTGCGAGGCTGGGCCAACC | + |
|
Preference number: 4 (lower is better) Translates to: RGTQSETGRRTDPRGEEALGVNR*CEAGPT Trigger: GGTTGGCCCAGCCTCGCAGCAGCGATTCACGCCCAG...GGCCTCTTCTCCTCTTGGGTCTGTTCTTCGGCCTGTCTCACTTTGCGTGCCTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025864.11 |
||
| CDS-3UTR CCA 90 bp | CCCACTAGTGGCCAGTGCCAAGGCAAGCTCAGGTCTAGGCCAACTCCGAGGATATCGCTGCTGCGAGGCTaGGCCAACCTAGGGCCCTAT | + |
|
Preference number: 4 (lower is better) Translates to: PTSGQCQGKLRSRPTPRISLLRG*ANLGPY Trigger: ATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGA...TATCCTCGGAGTTGGCCTAGACCTGAGCTTGCCTTGGCACTGGCCACTAGTGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025864.11 |
||
| CDS-3UTR CCA 90 bp | CTGGTACATCCTTTATTCCCAGCATTCAGGAAGCGGAAGCAGGTGGGTCTCTGCACGCTGCTGCGAGGCTaGGCCAACCTAGGGCCCTAT | + |
|
Preference number: 4 (lower is better) Translates to: LVHPLFPAFRKRKQVGLCTLLRG*ANLGPY Trigger: ATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGT...GCAGAGACCCACCTGCTTCCGCTTCCTGAATGCTGGGAATAAAGGATGTACCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236461.2 |
||
| CDS-3UTR CCA 90 bp | GGGATAGAAACAGTCGCTCCAAGTGGTGAGAAGGGATCTGTGACTGTCATTCTCCCCCACAAGGTGAAATaGCTGAAGCTGCCGGTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: GIETVAPSGEKGSVTVILPHKVK*LKLPVA Trigger: GGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGG...GAGAATGACAGTCACAGATCCCTTCTCACCACTTGGAGCGACTGTTTCTATCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025864.11 ENSMUST00000136226.2 ENSMUST00000155639.2 |
||
| CDS-3UTR CCA 90 bp | TCCTTTATTCCCAGCATTCAGGAAGCGGAAGCAGGTGGGTCTCTGCTGGTTTATCCCCACAAGGTGAAATaGCTGAAGCTGCCGGTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: SFIPSIQEAEAGGSLLVYPHKVK*LKLPVA Trigger: GGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGG...ATAAACCAGCAGAGACCCACCTGCTTCCGCTTCCTGAATGCTGGGAATAAAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236461.2 |
||
| CDS-3UTR CCA 90 bp | ATTGGGATAGAAACAGTCGCTCCAAGTGGTGAGAAGGGATCTGTGACTGTCATTCCGCTGCTGCGAGGCTaGGCCAACCTAGGGCCCTAT | + |
|
Preference number: 4 (lower is better) Translates to: IGIETVAPSGEKGSVTVIPLLRG*ANLGPY Trigger: ATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGG...AATGACAGTCACAGATCCCTTCTCACCACTTGGAGCGACTGTTTCTATCCCAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155639.2 |
||
| CDS-3UTR TCA 90 bp | TCAGTCCTCAGGGACCTGGGCGTGAATCTGCAACAGGAGTCACTTCTACTTTGTGAGGAAAAGGGCTCCTaGGTATACGTACCGCTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: SVLRDLGVNLQQESLLLCEEKGS*VYVPLL Trigger: CAGCAGCGGTACGTATACTCAGGAGCCCTTTTCCTC...ACAAAGTAGAAGTGACTCCTGTTGCAGATTCACGCCCAGGTCCCTGAGGACTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155639.2 |
||
| CDS-3UTR CCA 90 bp | ATAGAAACAGTCGCTCCAAGTGGTGAGAAGGGATCTGTGACTGTCATTCTCATGCCCCACAAGGTGAAATaGCTGAAGCTGCCGGTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: IETVAPSGEKGSVTVILMPHKVK*LKLPVA Trigger: GGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGG...CATGAGAATGACAGTCACAGATCCCTTCTCACCACTTGGAGCGACTGTTTCTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025864.11 ENSMUST00000136226.2 ENSMUST00000155639.2 |
||
| CDS-3UTR CCA 90 bp | TTTATTGGGATAGAAACAGTCGCTCCAAGTGGTGAGAAGGGATCTGTGACTGTCCCCCACAAGGTGAAATaGCTGAAGCTGCCGGTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: FIGIETVAPSGEKGSVTVPHKVK*LKLPVA Trigger: GGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGG...GACAGTCACAGATCCCTTCTCACCACTTGGAGCGACTGTTTCTATCCCAATAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025864.11 ENSMUST00000136226.2 ENSMUST00000155639.2 |
||
| CDS-3UTR TCA 90 bp | TCATTTATTGGGATAGAAACAGTCGCTCCAAGTGGTGAGAAGGGATCTGTGACTGAGCCAGGGCGCAGGTaGATACGCTGTTTCCCGTCT | + |
|
Preference number: 4 (lower is better) Translates to: SFIGIETVAPSGEKGSVTEPGRR*IRCFPS Trigger: AGACGGGAAACAGCGTATTCACCTGCGCCCTGGCTC...AGTCACAGATCCCTTCTCACCACTTGGAGCGACTGTTTCTATCCCAATAAATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025864.11 |
||
| CDS-3UTR GCA 90 bp | ATTGTGAAGATCTCATTTATTGGGATAGAAACAGTCGCTCCAAGTGGTGAGAAGACGCTGTTTCCCGTCTaGCGCTTCCTCCGGGTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: IVKISFIGIETVAPSGEKTLFPV*RFLRVL Trigger: AAGAACCCGGAGGAAGCGGCAGACGGGAAACAGCGT...CTTCTCACCACTTGGAGCGACTGTTTCTATCCCAATAAATGAGATCTTCACAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025864.11 |
||
| CDS CCA 90 bp | CGCAGGCCGCGACCGCGAAACGACGCCTGTAGCCCGTCTGCATCGTaGCGGACGGCGGGCGTGAAGAAGCGATCTACCGGGGCCGGCCGG | + |
|
Preference number: 5 (lower is better) Translates to: RRPRPRNDACSPSAS*RTAGVKKRSTGAGR Trigger: CCGGCCGGCCCCGGTAGATCGCTTCTTCACGCCCGCCGTCCGCCACGATGCAGACGGGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025864.11 ENSMUST00000155639.2 ENSMUST00000236461.2 |
||
| CDS CCA 90 bp | TTGGCATCTGGACCCGGGACCGTTTCCAGACCCCACAAGGTGAAATaGCTGAAGCTGCCGGTGGCCCCGATAAGGCGGTCGAAGTCCCGC | + |
|
Preference number: 5 (lower is better) Translates to: LASGPGTVSRPHKVK*LKLPVAPIRRSKSR Trigger: GCGGGACTTCGACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000025864.11 ENSMUST00000136226.2 ENSMUST00000155639.2 ENSMUST00000236461.2 |
||
| CDS TCA 90 bp | AATCGGATAGAAGGACTGACCAAGTCTGAGGAGGAAAAGGGCTCCTaGGTATACGTACCGCTGCTGCGAGGCTGGGCCAACCTAGGGCCC | + |
|
Preference number: 5 (lower is better) Translates to: NRIEGLTKSEEEKGS*VYVPLLRGWANLGP Trigger: GGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGGTACGTATACTCAGGAGCCCTTTTCCTCCTCAGACTTGGTCAGTCCTTCTATCCGATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155639.2 |
||
| CDS GCA 72 bp | GCCGGCCGGCTGACTAGAACGTCGCAGGGCAGGAGGTaGAGCTTAGCCGGTGCGGCACCACGCAGCGAGCCA | + |
|
Preference number: 6 (lower is better) Translates to: AGRLTRTSQGRR*SLAGAAPRSEP Trigger: TGGCTCGCTGCGTGGTGCCGCACCGGCTAAGCTGCACCTCCTGCCCTGCGACGTTCTAGTCAGCCGGCCGGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025864.11 ENSMUST00000236461.2 |
||
| CDS CCA 72 bp | CGACCGCGAAACGACGCCTGTAGCCCGTCTGCATCGTaGCGGACGGCGGGCGTGAAGAAGCGATCTACCGGG | + |
|
Preference number: 6 (lower is better) Translates to: RPRNDACSPSAS*RTAGVKKRSTG Trigger: CCCGGTAGATCGCTTCTTCACGCCCGCCGTCCGCCACGATGCAGACGGGCTACAGGCGTCGTTTCGCGGTCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025864.11 ENSMUST00000155639.2 ENSMUST00000236461.2 |
||
| CDS CAA 90 bp | AGGCGGTCGAAGTCCCGCTCCAGCGGCTCCTGCGCCTCGTCCGCTTaGTCCTCCGCGTCCCCGGAGAAGTTCAGTTTCCCTATCAACCCC | + |
|
Preference number: 6 (lower is better) Translates to: RRSKSRSSGSCASSA*SSASPEKFSFPINP Trigger: GGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTCGACCGCCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000025864.11 ENSMUST00000136226.2 ENSMUST00000155639.2 ENSMUST00000236461.2 |
||
| CDS CCA 72 bp | GGACCCGGGACCGTTTCCAGACCCCACAAGGTGAAATaGCTGAAGCTGCCGGTGGCCCCGATAAGGCGGTCG | + |
|
Preference number: 6 (lower is better) Translates to: GPGTVSRPHKVK*LKLPVAPIRRS Trigger: CGACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000025864.11 ENSMUST00000136226.2 ENSMUST00000155639.2 ENSMUST00000236461.2 |
||
| CDS CAA 72 bp | AAGTCCCGCTCCAGCGGCTCCTGCGCCTCGTCCGCTTaGTCCTCCGCGTCCCCGGAGAAGTTCAGTTTCCCT | + |
|
Preference number: 6 (lower is better) Translates to: KSRSSGSCASSA*SSASPEKFSFP Trigger: AGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000025864.11 ENSMUST00000136226.2 ENSMUST00000155639.2 ENSMUST00000236461.2 |
||
| CDS CCA 72 bp | CCTCAGGGACCTGGGCGTGAATCGCTGCTGCGAGGCTaGGCCAACCTAGGGCCCTATGCACTTTGGCATCTG | + |
|
Preference number: 6 (lower is better) Translates to: PQGPGRESLLRG*ANLGPYALWHL Trigger: CAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATTCACGCCCAGGTCCCTGAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025864.11 |
||
| CDS TCA 72 bp | GAAGGACTGACCAAGTCTGAGGAGGAAAAGGGCTCCTaGGTATACGTACCGCTGCTGCGAGGCTGGGCCAAC | + |
|
Preference number: 6 (lower is better) Translates to: EGLTKSEEEKGS*VYVPLLRGWAN Trigger: GTTGGCCCAGCCTCGCAGCAGCGGTACGTATACTCAGGAGCCCTTTTCCTCCTCAGACTTGGTCAGTCCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155639.2 |
||