Pregenerated sensors for RNASEH2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021932Ensembl transcript IDs: ENSMUST00000022499.13, ENSMUST00000169728.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGCTCATTTCAGCTGAAGCCATGCAGGACAGAGCAGGGAACACCTaGGCAATGCTCACACCTCCCTGGGGAAGCTGTGACTCGGTGACC | + |
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Preference number: 1 (lower is better) Translates to: QLISAEAMQDRAGNT*AMLTPPWGSCDSVT Trigger: GGTCACCGAGTCACAGCTTCCCCAGGGAGGTGTGAGCATTGCCCAGGTGTTCCCTGCTCTGTCCTGCATGGCTTCAGCTGAAATGAGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| 3UTR CCA 90 bp | ATGCAGGACAGAGCAGGGAACACCTGGGCAATGCTCACACCTCCCTaGGGAAGCTGTGACTCGGTGACCCATGCACTTGATGGCTTTTCA | + |
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Preference number: 1 (lower is better) Translates to: MQDRAGNTWAMLTPP*GSCDSVTHALDGFS Trigger: TGAAAAGCCATCAAGTGCATGGGTCACCGAGTCACAGCTTCCCCAGGGAGGTGTGAGCATTGCCCAGGTGTTCCCTGCTCTGTCCTGCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| 3UTR GCA 90 bp | TGTCATCGACCACGACTTGGTCCAAGGGCTGATACTTCCCCTCTTTaGCAGCCTTTAGGAGATAGTGAAGGAGCAGGAACAATGGATCCA | + |
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Preference number: 1 (lower is better) Translates to: CHRPRLGPRADTSPL*QPLGDSEGAGTMDP Trigger: TGGATCCATTGTTCCTGCTCCTTCACTATCTCCTAAAGGCTGGCAAAGAGGGGAAGTATCAGCCCTTGGACCAAGTCGTGGTCGATGACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169728.2 |
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| 3UTR CCA 90 bp | TGCCAGCCTTTAGGAGATAGTGAAGGAGCAGGAACAATGGATCCATaGGTGTGGCAAAGTGGAGAAGGCCCCCTGATTGAACTGATTGAT | + |
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Preference number: 1 (lower is better) Translates to: CQPLGDSEGAGTMDP*VWQSGEGPLIELID Trigger: ATCAATCAGTTCAATCAGGGGGCCTTCTCCACTTTGCCACACCCATGGATCCATTGTTCCTGCTCCTTCACTATCTCCTAAAGGCTGGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169728.2 |
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| 3UTR CCA 90 bp | CGGGCTCCAACATTGACATTATTAGCTTTTAGTGCCACCACAGTTTaGTTGACCTTCTTCTCCAGCCACTTCAATGTCTTCTCTGAGCTG | + |
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Preference number: 1 (lower is better) Translates to: RAPTLTLLAFSATTV*LTFFSSHFNVFSEL Trigger: CAGCTCAGAGAAGACATTGAAGTGGCTGGAGAAGAAGGTCAACCAAACTGTGGTGGCACTAAAAGCTAATAATGTCAATGTTGGAGCCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169728.2 |
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| 3UTR-3UTR GCA 90 bp | CATGCAGGACAGAGCAGGGAACACCTGGGCAATGCTCACACCTCCCTGGGGAAGCAAGTGTCTGCAGGATaGGAAAGTACCTTGATTCTC | + |
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Preference number: 2 (lower is better) Translates to: HAGQSREHLGNAHTSLGKQVSAG*ESTLIL Trigger: GAGAATCAAGGTACTTTCGCATCCTGCAGACACTTG...CTTCCCCAGGGAGGTGTGAGCATTGCCCAGGTGTTCCCTGCTCTGTCCTGCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| 3UTR-3UTR CCA 90 bp | ATCACTCAGTTCTTTAGGGATGTAATCAGAGATCAGACCATGGGCATAGCGAACATGGATCCATGGGTGTaGCAAAGTGGAGAAGGCCCC | + |
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Preference number: 2 (lower is better) Translates to: ITQFFRDVIRDQTMGIANMDPWV*QSGEGP Trigger: GGGGCCTTCTCCACTTTGCCACACCCATGGATCCAT...GTTCGCTATGCCCATGGTCTGATCTCTGATTACATCCCTAAAGAACTGAGTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169728.2 |
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| 3UTR-3UTR CCA 90 bp | ATCACTCAGTTCTTTAGGGATGTAATCAGAGATCAGACCATGGGCATAGCGAACGGAACAATGGATCCATaGGTGTGGCAAAGTGGAGAA | + |
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Preference number: 2 (lower is better) Translates to: ITQFFRDVIRDQTMGIANGTMDP*VWQSGE Trigger: TTCTCCACTTTGCCACACCCATGGATCCATTGTTCC...GTTCGCTATGCCCATGGTCTGATCTCTGATTACATCCCTAAAGAACTGAGTGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169728.2 |
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| 3UTR CAA 90 bp | GCTCCAACATTGACATTATTAGCTTTTAGTGCCACCACAGTTTGGTaGACCTTCTTCTCCAGCCACTTCAATGTCTTCTCTGAGCTGTAC | + |
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Preference number: 2 (lower is better) Translates to: APTLTLLAFSATTVW*TFFSSHFNVFSELY Trigger: GTACAGCTCAGAGAAGACATTGAAGTGGCTGGAGAAGAAGGTCAACCAAACTGTGGTGGCACTAAAAGCTAATAATGTCAATGTTGGAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169728.2 |
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| 3UTR-3UTR TCA 90 bp | CCTTCTTCTCCAGCCACTTCAATGTCTTCTCTGAGCTGTACTTATAGTACTTCTTGTCACATGCCGAAGTaGCTTTTCAAGCTCAGGAAA | + |
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Preference number: 2 (lower is better) Translates to: PSSPATSMSSLSCTYSTSCHMPK*LFKLRK Trigger: TTTCCTGAGCTTGAAAAGTCACTTCGGCATGTGACA...AGAAGTACTATAAGTACAGCTCAGAGAAGACATTGAAGTGGCTGGAGAAGAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169728.2 |
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| 3UTR CCA 72 bp | AGAGCAGGGAACACCTGGGCAATGCTCACACCTCCCTaGGGAAGCTGTGACTCGGTGACCCATGCACTTGAT | + |
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Preference number: 3 (lower is better) Translates to: RAGNTWAMLTPP*GSCDSVTHALD Trigger: ATCAAGTGCATGGGTCACCGAGTCACAGCTTCCCCAGGGAGGTGTGAGCATTGCCCAGGTGTTCCCTGCTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| 3UTR GCA 72 bp | GTGGTTTTGTTGTCCAGCTCATTTCAGCTGAAGCCATaGAGGACAGAGCAGGGAACACCTGGGCAATGCTCA | + |
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Preference number: 3 (lower is better) Translates to: VVLLSSSFQLKP*RTEQGTPGQCS Trigger: TGAGCATTGCCCAGGTGTTCCCTGCTCTGTCCTGCATGGCTTCAGCTGAAATGAGCTGGACAACAAAACCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| 3UTR GCA 72 bp | CCACGACTTGGTCCAAGGGCTGATACTTCCCCTCTTTaGCAGCCTTTAGGAGATAGTGAAGGAGCAGGAACA | + |
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Preference number: 3 (lower is better) Translates to: PRLGPRADTSPL*QPLGDSEGAGT Trigger: TGTTCCTGCTCCTTCACTATCTCCTAAAGGCTGGCAAAGAGGGGAAGTATCAGCCCTTGGACCAAGTCGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169728.2 |
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| 3UTR TCA 72 bp | CAATGCTCACACCTCCCTGGGGAAGCTGTGACTCGGTaGCCCATGCACTTGATGGCTTTTCATTATGGCAAA | + |
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Preference number: 3 (lower is better) Translates to: QCSHLPGEAVTR*PMHLMAFHYGK Trigger: TTTGCCATAATGAAAAGCCATCAAGTGCATGGGTCACCGAGTCACAGCTTCCCCAGGGAGGTGTGAGCATTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| 3UTR TCA 72 bp | CAAAATGTGTGGTTTTGTTGTCCAGCTCATTTCAGCTaGAGCCATGCAGGACAGAGCAGGGAACACCTGGGC | + |
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Preference number: 3 (lower is better) Translates to: QNVWFCCPAHFS*SHAGQSREHLG Trigger: GCCCAGGTGTTCCCTGCTCTGTCCTGCATGGCTTCAGCTGAAATGAGCTGGACAACAAAACCACACATTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| 3UTR CCA 72 bp | TTCAAGCTCAGGAAATCTCAGCAGCAAGGTGCAATCTaGAAACGTGTCATCGACCACGACTTGGTCCAAGGG | + |
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Preference number: 3 (lower is better) Translates to: FKLRKSQQQGAI*KRVIDHDLVQG Trigger: CCCTTGGACCAAGTCGTGGTCGATGACACGTTTCCAGATTGCACCTTGCTGCTGAGATTTCCTGAGCTTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169728.2 |
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| 3UTR CCA 72 bp | GATAGTGAAGGAGCAGGAACAATGGATCCATGGGTGTaGCAAAGTGGAGAAGGCCCCCTGATTGAACTGATT | + |
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Preference number: 3 (lower is better) Translates to: DSEGAGTMDPWV*QSGEGPLIELI Trigger: AATCAGTTCAATCAGGGGGCCTTCTCCACTTTGCCACACCCATGGATCCATTGTTCCTGCTCCTTCACTATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169728.2 |
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| 3UTR CCA 72 bp | TTAGGAGATAGTGAAGGAGCAGGAACAATGGATCCATaGGTGTGGCAAAGTGGAGAAGGCCCCCTGATTGAA | + |
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Preference number: 3 (lower is better) Translates to: LGDSEGAGTMDP*VWQSGEGPLIE Trigger: TTCAATCAGGGGGCCTTCTCCACTTTGCCACACCCATGGATCCATTGTTCCTGCTCCTTCACTATCTCCTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169728.2 |
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| 3UTR TCA 72 bp | GTCCCTGGAAACCTGACCACCAGAGAAATATGCAGATaGCTGAACCCGGGCTCCAACATTGACATTATTAGC | + |
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Preference number: 3 (lower is better) Translates to: VPGNLTTREICR*LNPGSNIDIIS Trigger: GCTAATAATGTCAATGTTGGAGCCCGGGTTCAGTCATCTGCATATTTCTCTGGTGGTCAGGTTTCCAGGGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169728.2 |
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| 3UTR GCA 72 bp | GTGACTTTTCAAGCTCAGGAAATCTCAGCAGCAAGGTaGAATCTGGAAACGTGTCATCGACCACGACTTGGT | + |
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Preference number: 3 (lower is better) Translates to: VTFQAQEISAAR*NLETCHRPRLG Trigger: ACCAAGTCGTGGTCGATGACACGTTTCCAGATTGCACCTTGCTGCTGAGATTTCCTGAGCTTGAAAAGTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169728.2 |
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| CDS-3UTR CCA 90 bp | GCAGGACAGAGCAGGGAACACCTGGGCAATGCTCACACCTCCCTGGGGAAGCTGGGAACAATGGATCCATaGGTGTGGCAAAGTGGAGAA | + |
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Preference number: 4 (lower is better) Translates to: AGQSREHLGNAHTSLGKLGTMDP*VWQSGE Trigger: TTCTCCACTTTGCCACACCCATGGATCCATTGTTCC...CAGCTTCCCCAGGGAGGTGTGAGCATTGCCCAGGTGTTCCCTGCTCTGTCCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS-3UTR GCA 90 bp | GGGCATAGCGAACATAATCCTCTTCCTTGTCCCTGGAAACCTGACCACCAGAGAAGTAGGAACACTAGCTaGCTGGCCGCCAAGTCCCCG | + |
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Preference number: 4 (lower is better) Translates to: GHSEHNPLPCPWKPDHQRSRNTS*LAAKSP Trigger: CGGGGACTTGGCGGCCAGGCAGCTAGTGTTCCTACT...TCTCTGGTGGTCAGGTTTCCAGGGACAAGGAAGAGGATTATGTTCGCTATGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169728.2 |
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| CDS-3UTR CCA 90 bp | AGCTCATTTCAGCTGAAGCCATGCAGGACAGAGCAGGGAACACCTGGGCAATGCATGGATCCATGGGTGTaGCAAAGTGGAGAAGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: SSFQLKPCRTEQGTPGQCMDPWV*QSGEGP Trigger: GGGGCCTTCTCCACTTTGCCACACCCATGGATCCAT...GCATTGCCCAGGTGTTCCCTGCTCTGTCCTGCATGGCTTCAGCTGAAATGAGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS-3UTR TCA 90 bp | AGTGACTTAGGGTCTGGGAGGTCGGGGCAGCGGCAAGAAGAGACAAGACAGAATCCACCACAGTTTGGTTaGCCTTCTTCTCCAGCCACT | + |
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Preference number: 4 (lower is better) Translates to: SDLGSGRSGQRQEETRQNPPQFG*PSSPAT Trigger: AGTGGCTGGAGAAGAAGGTCAACCAAACTGTGGTGG...ATTCTGTCTTGTCTCTTCTTGCCGCTGCCCCGACCTCCCAGACCCTAAGTCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS-3UTR TCA 90 bp | AGTGACTTAGGGTCTGGGAGGTCGGGGCAGCGGCAAGAAGAGACAAGACAGAATTGTCACATGCCGAAGTaGCTTTTCAAGCTCAGGAAA | + |
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Preference number: 4 (lower is better) Translates to: SDLGSGRSGQRQEETRQNCHMPK*LFKLRK Trigger: TTTCCTGAGCTTGAAAAGTCACTTCGGCATGTGACA...ATTCTGTCTTGTCTCTTCTTGCCGCTGCCCCGACCTCCCAGACCCTAAGTCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS-3UTR TCA 90 bp | AGGTCGGGGCAGCGGCAAGAAGAGACAAGACAGAATAGGCAAGAGGCAAGTTTCTTGTCCCTGGAAACCTaGCCACCAGAGAAATATGCA | + |
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Preference number: 4 (lower is better) Translates to: RSGQRQEETRQNRQEASFLSLET*PPEKYA Trigger: TGCATATTTCTCTGGTGGTCAGGTTTCCAGGGACAA...GAAACTTGCCTCTTGCCTATTCTGTCTTGTCTCTTCTTGCCGCTGCCCCGACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS-3UTR TCA 90 bp | CCACAATGGTTGTGTTTGTCAGACACAAAGTCACAGCGCAGCAAGTGTCTGCAGTGGAGGGTTGGTCAATaGAGCTGGAGGTTCTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: PQWLCLSDTKSQRSKCLQWRVGQ*SWRFWK Trigger: CTTCCAGAACCTCCAGCTTCATTGACCAACCCTCCA...CTGCAGACACTTGCTGCGCTGTGACTTTGTGTCTGACAAACACAACCATTGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS-3UTR GCA 90 bp | GGCAAGAAGAGACAAGACAGAATAGGCAAGAGGCAAGTTTCTGTTTCTGCTTCAAGTAGGAACACTAGCTaGCTGGCCGCCAAGTCCCCG | + |
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Preference number: 4 (lower is better) Translates to: GKKRQDRIGKRQVSVSASSRNTS*LAAKSP Trigger: CGGGGACTTGGCGGCCAGGCAGCTAGTGTTCCTACT...TGAAGCAGAAACAGAAACTTGCCTCTTGCCTATTCTGTCTTGTCTCTTCTTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS-3UTR CCA 90 bp | TGGGGAAGCTGTGACTCGGTGACCCATGCACTTGATGGCTTTTCATTATGGCAACCTCTTCCTTGTCCCTaGAAACCTGACCACCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: WGSCDSVTHALDGFSLWQPLPCP*KPDHQR Trigger: TCTCTGGTGGTCAGGTTTCCAGGGACAAGGAAGAGG...TTGCCATAATGAAAAGCCATCAAGTGCATGGGTCACCGAGTCACAGCTTCCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS-3UTR GCA 90 bp | AGTGACTTAGGGTCTGGGAGGTCGGGGCAGCGGCAAGAAGAGACAAGACAGAATTTTTCCTCTGTCACATaGCGAAGTGACTTTTCAAGC | + |
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Preference number: 4 (lower is better) Translates to: SDLGSGRSGQRQEETRQNFSSVT*RSDFSS Trigger: GCTTGAAAAGTCACTTCGGCATGTGACAGAGGAAAA...ATTCTGTCTTGTCTCTTCTTGCCGCTGCCCCGACCTCCCAGACCCTAAGTCACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS-3UTR CCA 90 bp | GGCAGCGGCAAGAAGAGACAAGACAGAATAGGCAAGAGGCAAGTTTCTGTTTCTTATCAATTAAGTATGTaGCTCCTTCCCCTGAGTGCG | + |
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Preference number: 4 (lower is better) Translates to: GSGKKRQDRIGKRQVSVSYQLSM*LLPLSA Trigger: CGCACTCAGGGGAAGGAGCCACATACTTAATTGATA...AGAAACAGAAACTTGCCTCTTGCCTATTCTGTCTTGTCTCTTCTTGCCGCTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| 3UTR CAA 72 bp | GCAGTTCACACAATCACTTTCCCACAATGGTTGTGTTaGTCAGACACAAAGTCACAGCGCAGCAAGTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: AVHTITFPQWLC*SDTKSQRSKCL Trigger: CAGACACTTGCTGCGCTGTGACTTTGTGTCTGACAAACACAACCATTGTGGGAAAGTGATTGTGTGAACTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS-3UTR GCA 90 bp | AATGGTTGTGTTTGTCAGACACAAAGTCACAGCGCAGCAAGTGTCTGCAGGATGGAGCTGCAGTCATTTTaGTATTTTTCTTGCCGGTCT | + |
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Preference number: 4 (lower is better) Translates to: NGCVCQTQSHSAASVCRMELQSF*YFSCRS Trigger: AGACCGGCAAGAAAAATAGCAAAATGACTGCAGCTC...CATCCTGCAGACACTTGCTGCGCTGTGACTTTGTGTCTGACAAACACAACCATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS-3UTR CCA 90 bp | ACAGCGCAGCAAGTGTCTGCAGGATGCGAAAGTACCTTGATTCTCAGCGTAGTGGAAGCTTCAAGAACTTaGATAAATCATCACTCAGTT | + |
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Preference number: 4 (lower is better) Translates to: TAQQVSAGCESTLILSVVEASRT*INHHSV Trigger: AACTGAGTGATGATTTATCCAAGTTCTTGAAGCTTC...CACTACGCTGAGAATCAAGGTACTTTCGCATCCTGCAGACACTTGCTGCGCTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS-3UTR GCA 90 bp | AGCAGTTCACACAATCACTTTCCCACAATGGTTGTGTTTGTCAGACACAAAGTCCAAAGCCTTCTGAGCTaGAGTCATTTTGCTATTTTT | + |
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Preference number: 4 (lower is better) Translates to: SSSHNHFPTMVVFVRHKVQSLLS*SHFAIF Trigger: AAAAATAGCAAAATGACTGCAGCTCAGAAGGCTTTG...GACTTTGTGTCTGACAAACACAACCATTGTGGGAAAGTGATTGTGTGAACTGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS-3UTR CAA 90 bp | AATGGTTGTGTTTGTCAGACACAAAGTCACAGCGCAGCAAGTGTCTGCAGGATGGCCACCACAGTTTGGTaGACCTTCTTCTCCAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: NGCVCQTQSHSAASVCRMATTVW*TFFSSH Trigger: GTGGCTGGAGAAGAAGGTCAACCAAACTGTGGTGGC...CATCCTGCAGACACTTGCTGCGCTGTGACTTTGTGTCTGACAAACACAACCATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS GCA 90 bp | CTCCTTCCCCTGAGTGCGGGTTGGCCAGCTTTACGAACAGGAGGCTaGTCTTCTTCTTCTTCTTCGAGGCATCTTTTAAATGTTCTGGAA | + |
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Preference number: 5 (lower is better) Translates to: LLPLSAGWPALRTGG*SSSSSSRHLLNVLE Trigger: TTCCAGAACATTTAAAAGATGCCTCGAAGAAGAAGAAGAAGAGCAGCCTCCTGTTCGTAAAGCTGGCCAACCCGCACTCAGGGGAAGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS-3UTR CAA 90 bp | CCACAATGGTTGTGTTTGTCAGACACAAAGTCACAGCGCAGCAAGTGTCTGCAGTTCTTTGATGGAGGGTaGGTCAATGAAGCTGGAGGT | + |
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Preference number: 5 (lower is better) Translates to: PQWLCLSDTKSQRSKCLQFFDGG*VNEAGG Trigger: ACCTCCAGCTTCATTGACCAACCCTCCATCAAAGAA...CTGCAGACACTTGCTGCGCTGTGACTTTGTGTCTGACAAACACAACCATTGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS-3UTR CAA 90 bp | AATGGTTGTGTTTGTCAGACACAAAGTCACAGCGCAGCAAGTGTCTGCAGGATGACCCGGGCTCCAACATaGACATTATTAGCTTTTAGT | + |
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Preference number: 5 (lower is better) Translates to: NGCVCQTQSHSAASVCRMTRAPT*TLLAFS Trigger: ACTAAAAGCTAATAATGTCAATGTTGGAGCCCGGGT...CATCCTGCAGACACTTGCTGCGCTGTGACTTTGTGTCTGACAAACACAACCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS CCA 72 bp | CTTTTAAATGTTCTGGAAGTAGGAACACTAGCTGCCTaGCCGCCAAGTCCCCGCGGTCCCGACCTCCGGCCA | + |
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Preference number: 6 (lower is better) Translates to: LLNVLEVGTLAA*PPSPRGPDLRP Trigger: TGGCCGGAGGTCGGGACCGCGGGGACTTGGCGGCCAGGCAGCTAGTGTTCCTACTTCCAGAACATTTAAAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS GCA 72 bp | GCATCTTTTAAATGTTCTGGAAGTAGGAACACTAGCTaGCTGGCCGCCAAGTCCCCGCGGTCCCGACCTCCG | + |
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Preference number: 6 (lower is better) Translates to: ASFKCSGSRNTS*LAAKSPRSRPP Trigger: CGGAGGTCGGGACCGCGGGGACTTGGCGGCCAGGCAGCTAGTGTTCCTACTTCCAGAACATTTAAAAGATGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS GCA 72 bp | CACATATCAATTAAGTATGTGGCTCCTTCCCCTGAGTaGGGGTTGGCCAGCTTTACGAACAGGAGGCTGCTC | + |
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Preference number: 6 (lower is better) Translates to: HISIKYVAPSPE*GLASFTNRRLL Trigger: GAGCAGCCTCCTGTTCGTAAAGCTGGCCAACCCGCACTCAGGGGAAGGAGCCACATACTTAATTGATATGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS CCA 72 bp | CAATTAAGTATGTGGCTCCTTCCCCTGAGTGCGGGTTaGCCAGCTTTACGAACAGGAGGCTGCTCTTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: QLSMWLLPLSAG*PALRTGGCSSS Trigger: AGAAGAAGAGCAGCCTCCTGTTCGTAAAGCTGGCCAACCCGCACTCAGGGGAAGGAGCCACATACTTAATTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS CAA 72 bp | TCAATTAAGTATGTGGCTCCTTCCCCTGAGTGCGGGTaGGCCAGCTTTACGAACAGGAGGCTGCTCTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: SIKYVAPSPECG*ASFTNRRLLFF Trigger: GAAGAAGAGCAGCCTCCTGTTCGTAAAGCTGGCCAACCCGCACTCAGGGGAAGGAGCCACATACTTAATTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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| CDS CAA 90 bp | AGACACATATCAATTAAGTATGTGGCTCCTTCCCCTGAGTGCGGGTaGGCCAGCTTTACGAACAGGAGGCTGCTCTTCTTCTTCTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: RHISIKYVAPSPECG*ASFTNRRLLFFFFF Trigger: GAAGAAGAAGAAGAAGAGCAGCCTCCTGTTCGTAAAGCTGGCCAACCCGCACTCAGGGGAAGGAGCCACATACTTAATTGATATGTGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022499.13 |
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