Pregenerated sensors for RNASEH1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020630Ensembl transcript IDs: ENSMUST00000020959.9, ENSMUST00000223322.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAAGAAACAGCCTCTGCCTTGGGTCTGAGTCGGCAGCAGCTCCTCTaGTCAGTCCTCAGACTGCTTCGCTCCTTCCCGTGCCAGTCTGTC | + |
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Preference number: 1 (lower is better) Translates to: KETASALGLSRQQLL*SVLRLLRSFPCQSV Trigger: GACAGACTGGCACGGGAAGGAGCGAAGCAGTCTGAGGACTGAGCAGAGGAGCTGCTGCCGACTCAGACCCAAGGCAGAGGCTGTTTCTTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223322.2 |
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| 3UTR CCA 90 bp | GTGATCCAGGAGTCAAGGCCACCTGAGTGTAGGCTGTGTCCCACGTaGCCACATTATCTCAGATGCACAGAGATAGAGGGCAGCTGCAGG | + |
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Preference number: 1 (lower is better) Translates to: VIQESRPPECRLCPT*PHYLRCTEIEGSCR Trigger: CCTGCAGCTGCCCTCTATCTCTGTGCATCTGAGATAATGTGGCCACGTGGGACACAGCCTACACTCAGGTGGCCTTGACTCCTGGATCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| 3UTR GCA 90 bp | CCCACGTGGCCACATTATCTCAGATGCACAGAGATAGAGGGCAGCTaGAGGGGCAGGAGTCTTGCACTTGTGCCTTCTGGAACTTTTAGG | + |
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Preference number: 1 (lower is better) Translates to: PTWPHYLRCTEIEGS*RGRSLALVPSGTFR Trigger: CCTAAAAGTTCCAGAAGGCACAAGTGCAAGACTCCTGCCCCTGCAGCTGCCCTCTATCTCTGTGCATCTGAGATAATGTGGCCACGTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| 3UTR-3UTR GCA 90 bp | CCACCTGAGTGTAGGCTGTGTCCCACGTGGCCACATTATCTCAGATGCACAGAGACACTGTGTCCTCCATaGACAGCTCAGTGCACGGCA | + |
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Preference number: 2 (lower is better) Translates to: PPECRLCPTWPHYLRCTETLCPP*TAQCTA Trigger: TGCCGTGCACTGAGCTGTGCATGGAGGACACAGTGT...CTCTGTGCATCTGAGATAATGTGGCCACGTGGGACACAGCCTACACTCAGGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| 3UTR-3UTR GCA 90 bp | AGTCTTGCACTTGTGCCTTCTGGAACTTTTAGGCCACACGTACTGACCAGGGTCCCACATTATCTCAGATaGACAGAGATAGAGGGCAGC | + |
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Preference number: 2 (lower is better) Translates to: SLALVPSGTFRPHVLTRVPHYLR*TEIEGS Trigger: GCTGCCCTCTATCTCTGTGCATCTGAGATAATGTGG...GACCCTGGTCAGTACGTGTGGCCTAAAAGTTCCAGAAGGCACAAGTGCAAGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| 3UTR-3UTR GCA 90 bp | ATATTGATTTTTAAAGGTCTCAGCTGTTCCTTCAAGGTGATCCAGGAGTCAAGGCTTCGCTCCTTCCCGTaGCAGTCTGTCGGCCTCTTC | + |
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Preference number: 2 (lower is better) Translates to: ILIFKGLSCSFKVIQESRLRSFP*QSVGLF Trigger: GAAGAGGCCGACAGACTGGCACGGGAAGGAGCGAAG...CCTTGACTCCTGGATCACCTTGAAGGAACAGCTGAGACCTTTAAAAATCAATAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223322.2 |
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| 3UTR-3UTR TCA 90 bp | ATATTGATTTTTAAAGGTCTCAGCTGTTCCTTCAAGGTGATCCAGGAGTCAAGGCCCACAAATCCTGAGTaGCCAGGAATGTGCATCCAC | + |
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Preference number: 2 (lower is better) Translates to: ILIFKGLSCSFKVIQESRPTNPE*PGMCIH Trigger: GTGGATGCACATTCCTGGTCACTCAGGATTTGTGGG...CCTTGACTCCTGGATCACCTTGAAGGAACAGCTGAGACCTTTAAAAATCAATAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223322.2 |
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| 3UTR GCA 72 bp | TGTAGGCTGTGTCCCACGTGGCCACATTATCTCAGATaGACAGAGATAGAGGGCAGCTGCAGGGGCAGGAGT | + |
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Preference number: 3 (lower is better) Translates to: CRLCPTWPHYLR*TEIEGSCRGRS Trigger: ACTCCTGCCCCTGCAGCTGCCCTCTATCTCTGTGCATCTGAGATAATGTGGCCACGTGGGACACAGCCTACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| 3UTR GCA 72 bp | TCGCTCCTTCCCGTGCCAGTCTGTCGGCCTCTTCATTaGCCACAAATCCTGAGTGACCAGGAATGTGCATCC | + |
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Preference number: 3 (lower is better) Translates to: SLLPVPVCRPLH*PQILSDQECAS Trigger: GGATGCACATTCCTGGTCACTCAGGATTTGTGGGCAATGAAGAGGCCGACAGACTGGCACGGGAAGGAGCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223322.2 |
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| 3UTR CCA 72 bp | GAGTCAAGGCCACCTGAGTGTAGGCTGTGTCCCACGTaGCCACATTATCTCAGATGCACAGAGATAGAGGGC | + |
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Preference number: 3 (lower is better) Translates to: ESRPPECRLCPT*PHYLRCTEIEG Trigger: GCCCTCTATCTCTGTGCATCTGAGATAATGTGGCCACGTGGGACACAGCCTACACTCAGGTGGCCTTGACTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| 3UTR-3UTR CAA 90 bp | CAGCTCCTCTGCTCAGTCCTCAGACTGCTTCGCTCCTTCCCGTGCCAGTCTGTCCATCTTTCCCTGTACTaGTTCTCCAGCCATTCTTCT | + |
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Preference number: 3 (lower is better) Translates to: QLLCSVLRLLRSFPCQSVHLSLY*FSSHSS Trigger: AGAAGAATGGCTGGAGAACAAGTACAGGGAAAGATG...GACAGACTGGCACGGGAAGGAGCGAAGCAGTCTGAGGACTGAGCAGAGGAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223322.2 |
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| CDS-3UTR GCA 90 bp | CATGCACAGCTCAGTGCACGGCAGGGTAAAGAAACAGCCTCTGCCTTGGGTCTGCGGCCAGTGTCACTGTaGGGGACAGCGGCAGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: HAQLSARQGKETASALGLRPVSL*GTAAAA Trigger: GGCTGCTGCCGCTGTCCCGCACAGTGACACTGGCCG...CAGACCCAAGGCAGAGGCTGTTTCTTTACCCTGCCGTGCACTGAGCTGTGCATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| CDS-3UTR GCA 90 bp | CTGTGCCACAGGTTACACTGTGTCCTCCATGCACAGCTCAGTGCACGGCAGGGTGGAAGACTCCGGTCCTaGGGCCTCTCCTCACCGCAT | + |
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Preference number: 4 (lower is better) Translates to: LCHRLHCVLHAQLSARQGGRLRS*GLSSPH Trigger: ATGCGGTGAGGAGAGGCCGCAGGACCGGAGTCTTCC...ACCCTGCCGTGCACTGAGCTGTGCATGGAGGACACAGTGTAACCTGTGGCACAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| CDS-3UTR CCA 90 bp | GCTGTGCCACAGGTTACACTGTGTCCTCCATGCACAGCTCAGTGCACGGCAGGGCTTCGGCCCTGGCTCTaGAAGTTCTTCCCCTTCACC | + |
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Preference number: 4 (lower is better) Translates to: AVPQVTLCPPCTAQCTAGLRPWL*KFFPFT Trigger: GGTGAAGGGGAAGAACTTCCAGAGCCAGGGCCGAAG...CCCTGCCGTGCACTGAGCTGTGCATGGAGGACACAGTGTAACCTGTGGCACAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| 3UTR CAA 72 bp | CTCAGTGCACGGCAGGGTAAAGAAACAGCCTCTGCCTaGGGTCTGAGTCGGCAGCAGCTCCTCTGCTCAGTC | + |
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Preference number: 4 (lower is better) Translates to: LSARQGKETASA*GLSRQQLLCSV Trigger: GACTGAGCAGAGGAGCTGCTGCCGACTCAGACCCAAGGCAGAGGCTGTTTCTTTACCCTGCCGTGCACTGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223322.2 |
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| CDS-3UTR GCA 90 bp | AGTCTTGCACTTGTGCCTTCTGGAACTTTTAGGCCACACGTACTGACCAGGGTCCGGCCAGTGTCACTGTaGGGGACAGCGGCAGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: SLALVPSGTFRPHVLTRVRPVSL*GTAAAA Trigger: GGCTGCTGCCGCTGTCCCGCACAGTGACACTGGCCG...GACCCTGGTCAGTACGTGTGGCCTAAAAGTTCCAGAAGGCACAAGTGCAAGACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| CDS-3UTR GCA 90 bp | CCACCTGAGTGTAGGCTGTGTCCCACGTGGCCACATTATCTCAGATGCACAGAGGGAAGACTCCGGTCCTaGGGCCTCTCCTCACCGCAT | + |
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Preference number: 4 (lower is better) Translates to: PPECRLCPTWPHYLRCTEGRLRS*GLSSPH Trigger: ATGCGGTGAGGAGAGGCCGCAGGACCGGAGTCTTCC...CTCTGTGCATCTGAGATAATGTGGCCACGTGGGACACAGCCTACACTCAGGTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| CDS-3UTR CCA 90 bp | AGCTGTGCCACAGGTTACACTGTGTCCTCCATGCACAGCTCAGTGCACGGCAGGGCCTTGCAGGCTGCATaGATCTCGGCCCTCTGGTTT | + |
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Preference number: 4 (lower is better) Translates to: SCATGYTVSSMHSSVHGRALQAA*ISALWF Trigger: AAACCAGAGGGCCGAGATCCATGCAGCCTGCAAGGC...CCTGCCGTGCACTGAGCTGTGCATGGAGGACACAGTGTAACCTGTGGCACAGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020959.9 |
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| CDS-3UTR TCA 90 bp | AACAGCCTCTGCCTTGGGTCTGAGTCGGCAGCAGCTCCTCTGCTCAGTCCTCAGACAGAACCAGCTTGCTaGTGTTCTGAGCCTTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: NSLCLGSESAAAPLLSPQTEPAC*CSEPWL Trigger: AAGCCAAGGCTCAGAACATCAGCAAGCTGGTTCTGT...CTGAGGACTGAGCAGAGGAGCTGCTGCCGACTCAGACCCAAGGCAGAGGCTGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223322.2 |
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| CDS-3UTR TCA 90 bp | CCAAGCTGTGCCACAGGTTACACTGTGTCCTCCATGCACAGCTCAGTGCACGGCCCCACAAATCCTGAGTaGCCAGGAATGTGCATCCAC | + |
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Preference number: 4 (lower is better) Translates to: PSCATGYTVSSMHSSVHGPTNPE*PGMCIH Trigger: GTGGATGCACATTCCTGGTCACTCAGGATTTGTGGG...GCCGTGCACTGAGCTGTGCATGGAGGACACAGTGTAACCTGTGGCACAGCTTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020959.9 |
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| CDS-3UTR GCA 90 bp | GTGCCTTCTGGAACTTTTAGGCCACACGTACTGACCAGGGTCTCACTGACTCCTGATGGCCTTGCAGGCTaGATGGATCTCGGCCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: VPSGTFRPHVLTRVSLTPDGLAG*MDLGPL Trigger: CAGAGGGCCGAGATCCATGCAGCCTGCAAGGCCATC...AGGAGTCAGTGAGACCCTGGTCAGTACGTGTGGCCTAAAAGTTCCAGAAGGCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020959.9 |
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| CDS-3UTR GCA 90 bp | GCTGTGCCACAGGTTACACTGTGTCCTCCATGCACAGCTCAGTGCACGGCAGGGTGTCGGCCTCTTCATTaGCCACAAATCCTGAGTGAC | + |
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Preference number: 4 (lower is better) Translates to: AVPQVTLCPPCTAQCTAGCRPLH*PQILSD Trigger: GTCACTCAGGATTTGTGGGCAATGAAGAGGCCGACA...CCCTGCCGTGCACTGAGCTGTGCATGGAGGACACAGTGTAACCTGTGGCACAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020959.9 |
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| CDS-3UTR CCA 90 bp | GCACTTGTGCCTTCTGGAACTTTTAGGCCACACGTACTGACCAGGGTCTCACTGCTTCGGCCCTGGCTCTaGAAGTTCTTCCCCTTCACC | + |
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Preference number: 4 (lower is better) Translates to: ALVPSGTFRPHVLTRVSLLRPWL*KFFPFT Trigger: GGTGAAGGGGAAGAACTTCCAGAGCCAGGGCCGAAG...CAGTGAGACCCTGGTCAGTACGTGTGGCCTAAAAGTTCCAGAAGGCACAAGTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| CDS-3UTR CCA 90 bp | ACAGGTTACACTGTGTCCTCCATGCACAGCTCAGTGCACGGCAGGGTAAAGAAACAGGAAGGGGTGGCCTaGGCCCCAGTAAACGCCAAT | + |
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Preference number: 4 (lower is better) Translates to: TGYTVSSMHSSVHGRVKKQEGVA*APVNAN Trigger: ATTGGCGTTTACTGGGGCCCAGGCCACCCCTTCCTG...TTTCTTTACCCTGCCGTGCACTGAGCTGTGCATGGAGGACACAGTGTAACCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223322.2 |
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| CDS-3UTR TCA 90 bp | CTCCTTCCCGTGCCAGTCTGTCGGCCTCTTCATTGCCCACAAATCCTGAGTGACAGCTTGCTGATGTTCTaGGCCTTGGCTTGCATGATG | + |
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Preference number: 4 (lower is better) Translates to: LLPVPVCRPLHCPQILSDSLLMF*ALACMM Trigger: CATCATGCAAGCCAAGGCTCAGAACATCAGCAAGCT...GTCACTCAGGATTTGTGGGCAATGAAGAGGCCGACAGACTGGCACGGGAAGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223322.2 |
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| CDS-3UTR GCA 90 bp | CCAAGCTGTGCCACAGGTTACACTGTGTCCTCCATGCACAGCTCAGTGCACGGCTCCCATATAAGAAAATaGGTCCTTGCTCACTACAGC | + |
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Preference number: 4 (lower is better) Translates to: PSCATGYTVSSMHSSVHGSHIRK*VLAHYS Trigger: GCTGTAGTGAGCAAGGACGCATTTTCTTATATGGGA...GCCGTGCACTGAGCTGTGCATGGAGGACACAGTGTAACCTGTGGCACAGCTTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| CDS-3UTR GCA 90 bp | GATTTAACACTTCCTTTCCATTATGTAAGCACGTCTCACCAAGCTGTGCCACAGCTTCGCTCCTTCCCGTaGCAGTCTGTCGGCCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: DLTLPFHYVSTSHQAVPQLRSFP*QSVGLF Trigger: GAAGAGGCCGACAGACTGGCACGGGAAGGAGCGAAG...CTGTGGCACAGCTTGGTGAGACGTGCTTACATAATGGAAAGGAAGTGTTAAATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020959.9 |
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| CDS-3UTR TCA 90 bp | ACTTTTAGGCCACACGTACTGACCAGGGTCTCACTGACTCCTACTAAAATCCAGACAGAACCAGCTTGCTaGTGTTCTGAGCCTTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: TFRPHVLTRVSLTPTKIQTEPAC*CSEPWL Trigger: AAGCCAAGGCTCAGAACATCAGCAAGCTGGTTCTGT...CTGGATTTTAGTAGGAGTCAGTGAGACCCTGGTCAGTACGTGTGGCCTAAAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| CDS-3UTR GCA 90 bp | GATTTAACACTTCCTTTCCATTATGTAAGCACGTCTCACCAAGCTGTGCCACAGGGTCCACCTGGGCTTTaGACTCACTCCAACTCAGGA | + |
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Preference number: 4 (lower is better) Translates to: DLTLPFHYVSTSHQAVPQGPPGL*THSNSG Trigger: TCCTGAGTTGGAGTGAGTGCAAAGCCCAGGTGGACC...CTGTGGCACAGCTTGGTGAGACGTGCTTACATAATGGAAAGGAAGTGTTAAATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| CDS-3UTR GCA 90 bp | GTGCCTTCTGGAACTTTTAGGCCACACGTACTGACCAGGGTCTCACTGACTCCTTCCCATATAAGAAAATaGGTCCTTGCTCACTACAGC | + |
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Preference number: 4 (lower is better) Translates to: VPSGTFRPHVLTRVSLTPSHIRK*VLAHYS Trigger: GCTGTAGTGAGCAAGGACGCATTTTCTTATATGGGA...AGGAGTCAGTGAGACCCTGGTCAGTACGTGTGGCCTAAAAGTTCCAGAAGGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| CDS-3UTR TCA 90 bp | GGAACTTTTAGGCCACACGTACTGACCAGGGTCTCACTGACTCCTACTAAAATCATTGCCCACAAATCCTaGGTGACCAGGAATGTGCAT | + |
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Preference number: 4 (lower is better) Translates to: GTFRPHVLTRVSLTPTKIIAHKS*VTRNVH Trigger: ATGCACATTCCTGGTCACTCAGGATTTGTGGGCAAT...GATTTTAGTAGGAGTCAGTGAGACCCTGGTCAGTACGTGTGGCCTAAAAGTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020959.9 |
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| CDS-3UTR TCA 90 bp | GATTTAACACTTCCTTTCCATTATGTAAGCACGTCTCACCAAGCTGTGCCACAGAGCTTGCTGATGTTCTaGGCCTTGGCTTGCATGATG | + |
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Preference number: 4 (lower is better) Translates to: DLTLPFHYVSTSHQAVPQSLLMF*ALACMM Trigger: CATCATGCAAGCCAAGGCTCAGAACATCAGCAAGCT...CTGTGGCACAGCTTGGTGAGACGTGCTTACATAATGGAAAGGAAGTGTTAAATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| CDS CCA 90 bp | AGCCGAGGGCTCGGTGTCCTGTCGTGTGTGCTTCGGCCCTGGCTCTaGAAGTTCTTCCCCTTCACCCAGGGGCTCCCGAGGCCGCTTGCT | + |
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Preference number: 5 (lower is better) Translates to: SRGLGVLSCVLRPWL*KFFPFTQGLPRPLA Trigger: AGCAAGCGGCCTCGGGAGCCCCTGGGTGAAGGGGAAGAACTTCCAGAGCCAGGGCCGAAGCACACACGACAGGACACCGAGCCCTCGGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| CDS CCA 90 bp | CACTACAGCCGAGGGCTCGGTGTCCTGTCGTGTGTGCTTCGGCCCTaGCTCTGGAAGTTCTTCCCCTTCACCCAGGGGCTCCCGAGGCCG | + |
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Preference number: 5 (lower is better) Translates to: HYSRGLGVLSCVLRP*LWKFFPFTQGLPRP Trigger: CGGCCTCGGGAGCCCCTGGGTGAAGGGGAAGAACTTCCAGAGCCAGGGCCGAAGCACACACGACAGGACACCGAGCCCTCGGCTGTAGTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| CDS GCA 90 bp | GCGTCCTTGCTCACTACAGCCGAGGGCTCGGTGTCCTGTCGTGTGTaGTTCGGCCCTGGCTCTGGAAGTTCTTCCCCTTCACCCAGGGGC | + |
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Preference number: 5 (lower is better) Translates to: ASLLTTAEGSVSCRV*FGPGSGSSSPSPRG Trigger: GCCCCTGGGTGAAGGGGAAGAACTTCCAGAGCCAGGGCCGAAGCACACACGACAGGACACCGAGCCCTCGGCTGTAGTGAGCAAGGACGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| CDS GCA 90 bp | GCTCTGGAAGTTCTTCCCCTTCACCCAGGGGCTCCCGAGGCCGCTTaGTGGTCTTCGCCTGTGACTTCTGCTCATGTGCACTTTCCTGCC | + |
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Preference number: 5 (lower is better) Translates to: ALEVLPLHPGAPEAA*WSSPVTSAHVHFPA Trigger: GGCAGGAAAGTGCACATGAGCAGAAGTCACAGGCGAAGACCAGCAAGCGGCCTCGGGAGCCCCTGGGTGAAGGGGAAGAACTTCCAGAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| CDS-3UTR CAA 90 bp | TCCTCTGCTCAGTCCTCAGACTGCTTCGCTCCTTCCCGTGCCAGTCTGTCGGCCGTTCTGAGCCTTGGCTaGCATGATGGCCTTGCAGGA | + |
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Preference number: 5 (lower is better) Translates to: SSAQSSDCFAPSRASLSAVLSLG*HDGLAG Trigger: TCCTGCAAGGCCATCATGCAAGCCAAGGCTCAGAAC...GGCCGACAGACTGGCACGGGAAGGAGCGAAGCAGTCTGAGGACTGAGCAGAGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223322.2 |
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| CDS-3UTR CAA 90 bp | GTGCCTTCTGGAACTTTTAGGCCACACGTACTGACCAGGGTCTCACTGACTCCTGTTCTGAGCCTTGGCTaGCATGATGGCCTTGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: VPSGTFRPHVLTRVSLTPVLSLG*HDGLAG Trigger: GCCTGCAAGGCCATCATGCAAGCCAAGGCTCAGAAC...AGGAGTCAGTGAGACCCTGGTCAGTACGTGTGGCCTAAAAGTTCCAGAAGGCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020959.9 |
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| CDS-3UTR CAA 90 bp | GGAACTTTTAGGCCACACGTACTGACCAGGGTCTCACTGACTCCTACTAAAATCTCTCGGCCCTCTGGTTaGTCTGTCGCCCAGGAAGCC | + |
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Preference number: 5 (lower is better) Translates to: GTFRPHVLTRVSLTPTKISRPSG*SVAQEA Trigger: GGCTTCCTGGGCGACAGACAAACCAGAGGGCCGAGA...GATTTTAGTAGGAGTCAGTGAGACCCTGGTCAGTACGTGTGGCCTAAAAGTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020959.9 |
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| CDS-3UTR CAA 90 bp | CTGTGCCACAGGTTACACTGTGTCCTCCATGCACAGCTCAGTGCACGGCAGGGTCATCTTTCCCTGTACTaGTTCTCCAGCCATTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: LCHRLHCVLHAQLSARQGHLSLY*FSSHSS Trigger: AGAAGAATGGCTGGAGAACAAGTACAGGGAAAGATG...ACCCTGCCGTGCACTGAGCTGTGCATGGAGGACACAGTGTAACCTGTGGCACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020959.9 |
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| CDS-3UTR CAA 90 bp | CCAAGCTGTGCCACAGGTTACACTGTGTCCTCCATGCACAGCTCAGTGCACGGCCAGTTAGTTATCCCATaGATGGTGAACATGCTGTCT | + |
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Preference number: 5 (lower is better) Translates to: PSCATGYTVSSMHSSVHGQLVIP*MVNMLS Trigger: AGACAGCATGTTCACCATCAATGGGATAACTAACTG...GCCGTGCACTGAGCTGTGCATGGAGGACACAGTGTAACCTGTGGCACAGCTTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020959.9 |
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| CDS CCA 72 bp | CGAGGGCTCGGTGTCCTGTCGTGTGTGCTTCGGCCCTaGCTCTGGAAGTTCTTCCCCTTCACCCAGGGGCTC | + |
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Preference number: 6 (lower is better) Translates to: RGLGVLSCVLRP*LWKFFPFTQGL Trigger: GAGCCCCTGGGTGAAGGGGAAGAACTTCCAGAGCCAGGGCCGAAGCACACACGACAGGACACCGAGCCCTCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| CDS GCA 72 bp | GTTCTTCCCCTTCACCCAGGGGCTCCCGAGGCCGCTTaGTGGTCTTCGCCTGTGACTTCTGCTCATGTGCAC | + |
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Preference number: 6 (lower is better) Translates to: VLPLHPGAPEAA*WSSPVTSAHVH Trigger: GTGCACATGAGCAGAAGTCACAGGCGAAGACCAGCAAGCGGCCTCGGGAGCCCCTGGGTGAAGGGGAAGAAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| CDS GCA 72 bp | CTCACTACAGCCGAGGGCTCGGTGTCCTGTCGTGTGTaGTTCGGCCCTGGCTCTGGAAGTTCTTCCCCTTCA | + |
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Preference number: 6 (lower is better) Translates to: LTTAEGSVSCRV*FGPGSGSSSPS Trigger: TGAAGGGGAAGAACTTCCAGAGCCAGGGCCGAAGCACACACGACAGGACACCGAGCCCTCGGCTGTAGTGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| CDS CCA 72 bp | CTTCCCCTTCACCCAGGGGCTCCCGAGGCCGCTTGCTaGTCTTCGCCTGTGACTTCTGCTCATGTGCACTTT | + |
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Preference number: 6 (lower is better) Translates to: LPLHPGAPEAAC*SSPVTSAHVHF Trigger: AAAGTGCACATGAGCAGAAGTCACAGGCGAAGACCAGCAAGCGGCCTCGGGAGCCCCTGGGTGAAGGGGAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| CDS GCA 72 bp | GTCTTCGCCTGTGACTTCTGCTCATGTGCACTTTCCTaGCCTTTTGAACCATCCGGGCTTGAAGAGCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: VFACDFCSCALS*PFEPSGLEELL Trigger: CAGGAGCTCTTCAAGCCCGGATGGTTCAAAAGGGCAGGAAAGTGCACATGAGCAGAAGTCACAGGCGAAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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| CDS GCA 72 bp | CAACGACTGACTCTCCCATATAAGAAAATGCGTCCTTaGTCACTACAGCCGAGGGCTCGGTGTCCTGTCGTG | + |
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Preference number: 6 (lower is better) Translates to: QRLTLPYKKMRP*SLQPRARCPVV Trigger: CACGACAGGACACCGAGCCCTCGGCTGTAGTGAGCAAGGACGCATTTTCTTATATGGGAGAGTCAGTCGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020959.9 ENSMUST00000223322.2 |
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