Pregenerated sensors for RNASE9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000052382Ensembl transcript IDs: ENSMUST00000064214.4
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGTGCATGATCAGAGGGAATAGACCCAAACTACCATTCTCAGGGTaGGCTACTCCCATATGTAACTGCTCAGAGAAACCTAGAATGTTG | + |
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Preference number: 1 (lower is better) Translates to: RCMIRGNRPKLPFSG*ATPICNCSEKPRML Trigger: CAACATTCTAGGTTTCTCTGAGCAGTTACATATGGGAGTAGCTCACCCTGAGAATGGTAGTTTGGGTCTATTCCCTCTGATCATGCACCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| 3UTR GCA 90 bp | CTCGCACACCCAGCCTCCTGCTTCTCTTCATGCTTGTCATCTGTTTaGTGGAGACTTATTGTCATGACCCATTCTGTAACCTTTATGAAA | + |
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Preference number: 1 (lower is better) Translates to: LAHPASCFSSCLSSV*WRLIVMTHSVTFMK Trigger: TTTCATAAAGGTTACAGAATGGGTCATGACAATAAGTCTCCAGCAAACAGATGACAAGCATGAAGAGAAGCAGGAGGCTGGGTGTGCGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| 3UTR CCA 90 bp | GCACACCCAGCCTCCTGCTTCTCTTCATGCTTGTCATCTGTTTGCTaGAGACTTATTGTCATGACCCATTCTGTAACCTTTATGAAAACA | + |
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Preference number: 1 (lower is better) Translates to: AHPASCFSSCLSSVC*RLIVMTHSVTFMKT Trigger: TGTTTTCATAAAGGTTACAGAATGGGTCATGACAATAAGTCTCCAGCAAACAGATGACAAGCATGAAGAGAAGCAGGAGGCTGGGTGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| 3UTR CAA 90 bp | AAACACCTGTTAGAGTTATGTGATCATAGCCCATGCCGACATTCATaGCTTTGGGGACGGAAAAGGAAAGAGGTGCATGATCAGAGGGAA | + |
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Preference number: 2 (lower is better) Translates to: KHLLELCDHSPCRHS*LWGRKRKEVHDQRE Trigger: TTCCCTCTGATCATGCACCTCTTTCCTTTTCCGTCCCCAAAGCAATGAATGTCGGCATGGGCTATGATCACATAACTCTAACAGGTGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| 3UTR CAA 90 bp | ACTCGCACACCCAGCCTCCTGCTTCTCTTCATGCTTGTCATCTGTTaGCTGGAGACTTATTGTCATGACCCATTCTGTAACCTTTATGAA | + |
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Preference number: 2 (lower is better) Translates to: TRTPSLLLLFMLVIC*LETYCHDPFCNLYE Trigger: TTCATAAAGGTTACAGAATGGGTCATGACAATAAGTCTCCAGCAAACAGATGACAAGCATGAAGAGAAGCAGGAGGCTGGGTGTGCGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| 3UTR-3UTR CCA 90 bp | ATGCTGAACCAGGAAAATCACATGAAAATTTGGATGATCTTCAGAAAGCTATTCCTAGAATGTTGGGGGTaGGGAGAGACATACTTCTGG | + |
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Preference number: 2 (lower is better) Translates to: MLNQENHMKIWMIFRKLFLECWG*GETYFW Trigger: CCAGAAGTATGTCTCTCCCCACCCCCAACATTCTAG...GAATAGCTTTCTGAAGATCATCCAAATTTTCATGTGATTTTCCTGGTTCAGCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| 3UTR-3UTR TCA 90 bp | CCAGGAAAATCACATGAAAATTTGGATGATCTTCAGAAAGCTATTCCAAAGCATAAGGAAAGAGGTGCATaGTCAGAGGGAATAGACCCA | + |
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Preference number: 2 (lower is better) Translates to: PGKSHENLDDLQKAIPKHKERGA*SEGIDP Trigger: TGGGTCTATTCCCTCTGATCATGCACCTCTTTCCTT...ATGCTTTGGAATAGCTTTCTGAAGATCATCCAAATTTTCATGTGATTTTCCTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| 3UTR-3UTR GCA 90 bp | TTCATGCTGAACCAGGAAAATCACATGAAAATTTGGATGATCTTCAGAAAGCTAGGAAAAGGAAAGAGGTaGATGATCAGAGGGAATAGA | + |
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Preference number: 2 (lower is better) Translates to: FMLNQENHMKIWMIFRKLGKGKR*MIRGNR Trigger: TCTATTCCCTCTGATCATGCACCTCTTTCCTTTTCC...TAGCTTTCTGAAGATCATCCAAATTTTCATGTGATTTTCCTGGTTCAGCATGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| 3UTR-3UTR GCA 90 bp | CCAGGAAAATCACATGAAAATTTGGATGATCTTCAGAAAGCTATTCCAAAGCATACTCCCATATGTAACTaGTCAGAGAAACCTAGAATG | + |
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Preference number: 2 (lower is better) Translates to: PGKSHENLDDLQKAIPKHTPICN*SEKPRM Trigger: CATTCTAGGTTTCTCTGAGCAGTTACATATGGGAGT...ATGCTTTGGAATAGCTTTCTGAAGATCATCCAAATTTTCATGTGATTTTCCTGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| 3UTR-3UTR CCA 90 bp | TTCATGCTGAACCAGGAAAATCACATGAAAATTTGGATGATCTTCAGAAAGCTATTGTCATCTGTTTGCTaGAGACTTATTGTCATGACC | + |
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Preference number: 2 (lower is better) Translates to: FMLNQENHMKIWMIFRKLLSSVC*RLIVMT Trigger: GGTCATGACAATAAGTCTCCAGCAAACAGATGACAA...TAGCTTTCTGAAGATCATCCAAATTTTCATGTGATTTTCCTGGTTCAGCATGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| 3UTR-3UTR CAA 90 bp | AGTGCTGAAGGCATTAACCTGAACTCGCACACCCAGCCTCCTGCTTCTCTTCATGAGAAACCTAGAATGTaGGGGGTGGGGAGAGACATA | + |
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Preference number: 3 (lower is better) Translates to: SAEGINLNSHTQPPASLHEKPRM*GVGRDI Trigger: TATGTCTCTCCCCACCCCCAACATTCTAGGTTTCTC...ATGAAGAGAAGCAGGAGGCTGGGTGTGCGAGTTCAGGTTAATGCCTTCAGCACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| 3UTR GCA 72 bp | CCTGAACTCGCACACCCAGCCTCCTGCTTCTCTTCATaGTTGTCATCTGTTTGCTGGAGACTTATTGTCATG | + |
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Preference number: 3 (lower is better) Translates to: PELAHPASCFSS*LSSVCWRLIVM Trigger: CATGACAATAAGTCTCCAGCAAACAGATGACAAGCATGAAGAGAAGCAGGAGGCTGGGTGTGCGAGTTCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| 3UTR CCA 72 bp | CTCCCATATGTAACTGCTCAGAGAAACCTAGAATGTTaGGGGTGGGGAGAGACATACTTCTGGTGTCCAATG | + |
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Preference number: 3 (lower is better) Translates to: LPYVTAQRNLEC*GWGETYFWCPM Trigger: CATTGGACACCAGAAGTATGTCTCTCCCCACCCCCAACATTCTAGGTTTCTCTGAGCAGTTACATATGGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| 3UTR TCA 72 bp | TTCATTGCTTTGGGGACGGAAAAGGAAAGAGGTGCATaGTCAGAGGGAATAGACCCAAACTACCATTCTCAG | + |
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Preference number: 3 (lower is better) Translates to: FIALGTEKERGA*SEGIDPNYHSQ Trigger: CTGAGAATGGTAGTTTGGGTCTATTCCCTCTGATCATGCACCTCTTTCCTTTTCCGTCCCCAAAGCAATGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| 3UTR CCA 72 bp | GCCTCCTGCTTCTCTTCATGCTTGTCATCTGTTTGCTaGAGACTTATTGTCATGACCCATTCTGTAACCTTT | + |
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Preference number: 3 (lower is better) Translates to: ASCFSSCLSSVC*RLIVMTHSVTF Trigger: AAAGGTTACAGAATGGGTCATGACAATAAGTCTCCAGCAAACAGATGACAAGCATGAAGAGAAGCAGGAGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| CDS-3UTR CCA 90 bp | CATTGCTTTGGGGACGGAAAAGGAAAGAGGTGCATGATCAGAGGGAATAGACCCCAGCAGCAGCAGCAATaGCAAAGGCCAGGCGAACTT | + |
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Preference number: 4 (lower is better) Translates to: HCFGDGKGKRCMIRGNRPQQQQQ*QRPGEL Trigger: AAGTTCGCCTGGCCTTTGCCATTGCTGCTGCTGCTG...GGGTCTATTCCCTCTGATCATGCACCTCTTTCCTTTTCCGTCCCCAAAGCAATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| CDS-3UTR GCA 90 bp | TTTGGGGACGGAAAAGGAAAGAGGTGCATGATCAGAGGGAATAGACCCAAACTAACCATAGGGCACTCCTaGAATGTAGTGTTCTGGGTA | + |
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Preference number: 4 (lower is better) Translates to: FGDGKGKRCMIRGNRPKLTIGHS*NVVFWV Trigger: TACCCAGAACACTACATTGCAGGAGTGCCCTATGGT...TAGTTTGGGTCTATTCCCTCTGATCATGCACCTCTTTCCTTTTCCGTCCCCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| CDS-3UTR CCA 90 bp | TTTGGGGACGGAAAAGGAAAGAGGTGCATGATCAGAGGGAATAGACCCAAACTATCTTTTTACGGTAGGTaGTTTGGTGGGCCCTGTACT | + |
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Preference number: 4 (lower is better) Translates to: FGDGKGKRCMIRGNRPKLSFYGR*FGGPCT Trigger: AGTACAGGGCCCACCAAACCACCTACCGTAAAAAGA...TAGTTTGGGTCTATTCCCTCTGATCATGCACCTCTTTCCTTTTCCGTCCCCAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| 3UTR CAA 72 bp | ACTCCCATATGTAACTGCTCAGAGAAACCTAGAATGTaGGGGGTGGGGAGAGACATACTTCTGGTGTCCAAT | + |
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Preference number: 4 (lower is better) Translates to: TPICNCSEKPRM*GVGRDILLVSN Trigger: ATTGGACACCAGAAGTATGTCTCTCCCCACCCCCAACATTCTAGGTTTCTCTGAGCAGTTACATATGGGAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| 3UTR CAA 72 bp | CCCAGCCTCCTGCTTCTCTTCATGCTTGTCATCTGTTaGCTGGAGACTTATTGTCATGACCCATTCTGTAAC | + |
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Preference number: 4 (lower is better) Translates to: PSLLLLFMLVIC*LETYCHDPFCN Trigger: GTTACAGAATGGGTCATGACAATAAGTCTCCAGCAAACAGATGACAAGCATGAAGAGAAGCAGGAGGCTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| 3UTR CAA 72 bp | TTAGAGTTATGTGATCATAGCCCATGCCGACATTCATaGCTTTGGGGACGGAAAAGGAAAGAGGTGCATGAT | + |
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Preference number: 4 (lower is better) Translates to: LELCDHSPCRHS*LWGRKRKEVHD Trigger: ATCATGCACCTCTTTCCTTTTCCGTCCCCAAAGCAATGAATGTCGGCATGGGCTATGATCACATAACTCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| CDS-3UTR GCA 90 bp | TTTGGGGACGGAAAAGGAAAGAGGTGCATGATCAGAGGGAATAGACCCAAACTAGTGCAGTTTGTCATTTaGTGTCCTGTTTCTAAAACA | + |
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Preference number: 4 (lower is better) Translates to: FGDGKGKRCMIRGNRPKLVQFVI*CPVSKT Trigger: TGTTTTAGAAACAGGACAGCAAATGACAAACTGCAC...TAGTTTGGGTCTATTCCCTCTGATCATGCACCTCTTTCCTTTTCCGTCCCCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| CDS-3UTR GCA 90 bp | ATGCTGAACCAGGAAAATCACATGAAAATTTGGATGATCTTCAGAAAGCTATTCGGATGGTTTTATATGTaGAGTTTGTCATTTGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: MLNQENHMKIWMIFRKLFGWFYM*SLSFAV Trigger: GACAGCAAATGACAAACTGCACATATAAAACCATCC...GAATAGCTTTCTGAAGATCATCCAAATTTTCATGTGATTTTCCTGGTTCAGCAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| CDS-3UTR CAA 90 bp | TGTGATCATAGCCCATGCCGACATTCATTGCTTTGGGGACGGAAAAGGAAAGAGTTTACGGTAGGTGGTTaGGTGGGCCCTGTACTCTCA | + |
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Preference number: 5 (lower is better) Translates to: CDHSPCRHSLLWGRKRKEFTVGG*VGPVLS Trigger: TGAGAGTACAGGGCCCACCAAACCACCTACCGTAAA...CTCTTTCCTTTTCCGTCCCCAAAGCAATGAATGTCGGCATGGGCTATGATCACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| CDS TCA 90 bp | TGGTTTCTTCATCCCATTGACAGGAGACAACTGGATAACCAATCATaGGGATGGTTTTATATGTGCAGTTTGTCATTTGCTGTCCTGTTT | + |
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Preference number: 5 (lower is better) Translates to: WFLHPIDRRQLDNQS*GWFYMCSLSFAVLF Trigger: AAACAGGACAGCAAATGACAAACTGCACATATAAAACCATCCTCATGATTGGTTATCCAGTTGTCTCCTGTCAATGGGATGAAGAAACCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| CDS-3UTR CAA 90 bp | CCAGGAAAATCACATGAAAATTTGGATGATCTTCAGAAAGCTATTCCAAAGCATGTAGTCATTGAAAGGTaGGTCACCAATGGTGATCAT | + |
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Preference number: 5 (lower is better) Translates to: PGKSHENLDDLQKAIPKHVVIER*VTNGDH Trigger: ATGATCACCATTGGTGACCAACCTTTCAATGACTAC...ATGCTTTGGAATAGCTTTCTGAAGATCATCCAAATTTTCATGTGATTTTCCTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| CDS-3UTR CAA 90 bp | TTCATGCTGAACCAGGAAAATCACATGAAAATTTGGATGATCTTCAGAAAGCTAAACGCCATTCTTACATaGCACTTCTTCACCATCACA | + |
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Preference number: 5 (lower is better) Translates to: FMLNQENHMKIWMIFRKLNAILT*HFFTIT Trigger: TGTGATGGTGAAGAAGTGCAATGTAAGAATGGCGTT...TAGCTTTCTGAAGATCATCCAAATTTTCATGTGATTTTCCTGGTTCAGCATGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| CDS TCA 72 bp | CATCCCATTGACAGGAGACAACTGGATAACCAATCATaGGGATGGTTTTATATGTGCAGTTTGTCATTTGCT | + |
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Preference number: 6 (lower is better) Translates to: HPIDRRQLDNQS*GWFYMCSLSFA Trigger: AGCAAATGACAAACTGCACATATAAAACCATCCTCATGATTGGTTATCCAGTTGTCTCCTGTCAATGGGATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| CDS GCA 72 bp | ATGCTTCTTCTGCAAGATTTAACGCCATTCTTACATTaGACTTCTTCACCATCACAGGCTTTTACTAGCTCA | + |
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Preference number: 6 (lower is better) Translates to: MLLLQDLTPFLH*TSSPSQAFTSS Trigger: TGAGCTAGTAAAAGCCTGTGATGGTGAAGAAGTGCAATGTAAGAATGGCGTTAAATCTTGCAGAAGAAGCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| CDS CCA 72 bp | AATGGTGATCATTTCTATGATTCTTTTTACGGTAGGTaGTTTGGTGGGCCCTGTACTCTCATATTCCCTAAT | + |
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Preference number: 6 (lower is better) Translates to: NGDHFYDSFYGR*FGGPCTLIFPN Trigger: ATTAGGGAATATGAGAGTACAGGGCCCACCAAACCACCTACCGTAAAAAGAATCATAGAAATGATCACCATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| CDS CAA 72 bp | GTGATCATTTCTATGATTCTTTTTACGGTAGGTGGTTaGGTGGGCCCTGTACTCTCATATTCCCTAATAAAG | + |
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Preference number: 6 (lower is better) Translates to: VIISMILFTVGG*VGPVLSYSLIK Trigger: CTTTATTAGGGAATATGAGAGTACAGGGCCCACCAAACCACCTACCGTAAAAAGAATCATAGAAATGATCAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| CDS CAA 90 bp | TTTAGTCCTGAGTTCAGTGTTGCAGTAATCGTAGTCATTGAAAGGTaGGTCACCAATGGTGATCATTTCTATGATTCTTTTTACGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: FSPEFSVAVIVVIER*VTNGDHFYDSFYGR Trigger: CCTACCGTAAAAAGAATCATAGAAATGATCACCATTGGTGACCAACCTTTCAATGACTACGATTACTGCAACACTGAACTCAGGACTAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| CDS CCA 72 bp | AATTTTGGTTTCTTCATCCCATTGACAGGAGACAACTaGATAACCAATCATGAGGATGGTTTTATATGTGCA | + |
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Preference number: 6 (lower is better) Translates to: NFGFFIPLTGDN*ITNHEDGFICA Trigger: TGCACATATAAAACCATCCTCATGATTGGTTATCCAGTTGTCTCCTGTCAATGGGATGAAGAAACCAAAATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| CDS CAA 72 bp | GAGTTCAGTGTTGCAGTAATCGTAGTCATTGAAAGGTaGGTCACCAATGGTGATCATTTCTATGATTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: EFSVAVIVVIER*VTNGDHFYDSF Trigger: AAAAGAATCATAGAAATGATCACCATTGGTGACCAACCTTTCAATGACTACGATTACTGCAACACTGAACTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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| CDS CAA 72 bp | ATGGTCAGGAATAAAAATTTTGGTTTCTTCATCCCATaGACAGGAGACAACTGGATAACCAATCATGAGGAT | + |
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Preference number: 6 (lower is better) Translates to: MVRNKNFGFFIP*TGDNWITNHED Trigger: ATCCTCATGATTGGTTATCCAGTTGTCTCCTGTCAATGGGATGAAGAAACCAAAATTTTTATTCCTGACCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000064214.4 |
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