Pregenerated sensors for RNASE4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021876Ensembl transcript IDs: ENSMUST00000022428.13, ENSMUST00000169895.3
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TGGCAGAATTGGTCTCAAGGGGTGTTAGAGGACTGGAATGAGACAGCTTGGACAAAGCCATCAGTGCTGTaGGCAGTGGGTTCTTTCTTC | + |
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Preference number: 2 (lower is better) Translates to: WQNWSQGVLEDWNETAWTKPSVL*AVGSFF Trigger: GAAGAAAGAACCCACTGCTCACAGCACTGATGGCTT...TGTCCAAGCTGTCTCATTCCAGTCCTCTAACACCCCTTGAGACCAATTCTGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| 3UTR-3UTR GCA 90 bp | TGGCAGAATTGGTCTCAAGGGGTGTTAGAGGACTGGAATGAGACAGCTTGGACAGAACCAAGCCATCAGTaGTGTGAGCAGTGGGTTCTT | + |
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Preference number: 2 (lower is better) Translates to: WQNWSQGVLEDWNETAWTEPSHQ*CEQWVL Trigger: AAGAACCCACTGCTCACAGCACTGATGGCTTGGTTC...TGTCCAAGCTGTCTCATTCCAGTCCTCTAACACCCCTTGAGACCAATTCTGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| 3UTR-3UTR CCA 90 bp | AGAGGCATCTCTCCAGCCCCTATTTCCAAACTCTTAGTGGCTTCCCTAATGATGAAAGGAAACAAAGCCTaGGGCCACCACTCATTGTTG | + |
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Preference number: 2 (lower is better) Translates to: RGISPAPISKLLVASLMMKGNKA*GHHSLL Trigger: CAACAATGAGTGGTGGCCCCAGGCTTTGTTTCCTTT...CATCATTAGGGAAGCCACTAAGAGTTTGGAAATAGGGGCTGGAGAGATGCCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| 3UTR-3UTR CCA 90 bp | TTTCTTCCCTTGGATGGGATGCGCTTAACACCATGGGTTATATTGGATATATGTAAAGGAAACAAAGCCTaGGGCCACCACTCATTGTTG | + |
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Preference number: 2 (lower is better) Translates to: FLPLDGMRLTPWVILDICKGNKA*GHHSLL Trigger: CAACAATGAGTGGTGGCCCCAGGCTTTGTTTCCTTT...ACATATATCCAATATAACCCATGGTGTTAAGCGCATCCCATCCAAGGGAAGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| 3UTR-3UTR TCA 90 bp | TTTCTTCCCTTGGATGGGATGCGCTTAACACCATGGGTTATATTGGATATATGTCATTGTTGGTCTCACTaGCTCAGAGGTCAACTATCA | + |
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Preference number: 2 (lower is better) Translates to: FLPLDGMRLTPWVILDICHCWSH*LRGQLS Trigger: TGATAGTTGACCTCTGAGTCAGTGAGACCAACAATG...ACATATATCCAATATAACCCATGGTGTTAAGCGCATCCCATCCAAGGGAAGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| 3UTR-3UTR TCA 90 bp | GGGTTATATTGGATATATGTGAGTATAAGGCACGAGCAAAGGAAACAAAGCCTGCATTGTTGGTCTCACTaGCTCAGAGGTCAACTATCA | + |
|
Preference number: 2 (lower is better) Translates to: GLYWIYVSIRHEQRKQSLHCWSH*LRGQLS Trigger: TGATAGTTGACCTCTGAGTCAGTGAGACCAACAATG...CAGGCTTTGTTTCCTTTGCTCGTGCCTTATACTCACATATATCCAATATAACCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| 3UTR CCA 72 bp | TGGGTTACAGACAGTTGTGAGCTGATGTGTGGGCGCTaGGAATTGAACCTGGGTCCTCTAGAGGAGCAGCCA | + |
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Preference number: 3 (lower is better) Translates to: WVTDSCELMCGR*ELNLGPLEEQP Trigger: TGGCTGCTCCTCTAGAGGACCCAGGTTCAATTCCCAGCGCCCACACATCAGCTCACAACTGTCTGTAACCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| 3UTR-3UTR CAA 90 bp | TGTGAGCAGTGGGTTCTTTCTTCCCTTGGATGGGATGCGCTTAACACCATGGGTGGCCACCACTCATTGTaGGTCTCACTGACTCAGAGG | + |
|
Preference number: 3 (lower is better) Translates to: CEQWVLSSLGWDALNTMGGHHSL*VSLTQR Trigger: CCTCTGAGTCAGTGAGACCAACAATGAGTGGTGGCC...ACCCATGGTGTTAAGCGCATCCCATCCAAGGGAAGAAAGAACCCACTGCTCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| 3UTR TCA 72 bp | GGGATAGAATCTGGGAGAACCAAGCCATCAGTGCTGTaGGCAGTGGGTTCTTTCTTCCCTTGGATGGGATGC | + |
|
Preference number: 3 (lower is better) Translates to: GIESGRTKPSVL*AVGSFFPWMGC Trigger: GCATCCCATCCAAGGGAAGAAAGAACCCACTGCTCACAGCACTGATGGCTTGGTTCTCCCAGATTCTATCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| 3UTR CCA 72 bp | AATCTGGGAGAACCAAGCCATCAGTGCTGTGAGCAGTaGGTTCTTTCTTCCCTTGGATGGGATGCGCTTAAC | + |
|
Preference number: 3 (lower is better) Translates to: NLGEPSHQCCEQ*VLSSLGWDALN Trigger: GTTAAGCGCATCCCATCCAAGGGAAGAAAGAACCCACTGCTCACAGCACTGATGGCTTGGTTCTCCCAGATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| 3UTR-3UTR CAA 90 bp | AGAGGCATCTCTCCAGCCCCTATTTCCAAACTCTTAGTGGCTTCCCTAATGATGGGGTTCTTTCTTCCCTaGGATGGGATGCGCTTAACA | + |
|
Preference number: 3 (lower is better) Translates to: RGISPAPISKLLVASLMMGFFLP*DGMRLT Trigger: TGTTAAGCGCATCCCATCCAAGGGAAGAAAGAACCC...CATCATTAGGGAAGCCACTAAGAGTTTGGAAATAGGGGCTGGAGAGATGCCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| 3UTR CCA 72 bp | CAGTGGCAGAATTGGTCTCAAGGGGTGTTAGAGGACTaGAATGAGACAGCTTGGACAGAAAAGGCTCTCTAT | + |
|
Preference number: 3 (lower is better) Translates to: QWQNWSQGVLED*NETAWTEKALY Trigger: ATAGAGAGCCTTTTCTGTCCAAGCTGTCTCATTCCAGTCCTCTAACACCCCTTGAGACCAATTCTGCCACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| 3UTR-3UTR CAA 90 bp | ATGCGCTTAACACCATGGGTTATATTGGATATATGTGAGTATAAGGCACGAGCAGGCCACCACTCATTGTaGGTCTCACTGACTCAGAGG | + |
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Preference number: 3 (lower is better) Translates to: MRLTPWVILDICEYKARAGHHSL*VSLTQR Trigger: CCTCTGAGTCAGTGAGACCAACAATGAGTGGTGGCC...TGCTCGTGCCTTATACTCACATATATCCAATATAACCCATGGTGTTAAGCGCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| 3UTR CCA 72 bp | CAGTGCTGTGAGCAGTGGGTTCTTTCTTCCCTTGGATaGGATGCGCTTAACACCATGGGTTATATTGGATAT | + |
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Preference number: 3 (lower is better) Translates to: QCCEQWVLSSLG*DALNTMGYIGY Trigger: ATATCCAATATAACCCATGGTGTTAAGCGCATCCCATCCAAGGGAAGAAAGAACCCACTGCTCACAGCACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| 3UTR CCA 72 bp | TTCTTTCTTCCCTTGGATGGGATGCGCTTAACACCATaGGTTATATTGGATATATGTGAGTATAAGGCACGA | + |
|
Preference number: 3 (lower is better) Translates to: FFLPLDGMRLTP*VILDICEYKAR Trigger: TCGTGCCTTATACTCACATATATCCAATATAACCCATGGTGTTAAGCGCATCCCATCCAAGGGAAGAAAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR TCA 90 bp | TGTGAGCAGTGGGTTCTTTCTTCCCTTGGATGGGATGCGCTTAACACCATGGGTTTGCCACCTGTCACCTaGGGGTCCACATGCTGTCGA | + |
|
Preference number: 4 (lower is better) Translates to: CEQWVLSSLGWDALNTMGLPPVT*GSTCCR Trigger: TCGACAGCATGTGGACCCTCAGGTGACAGGTGGCAA...ACCCATGGTGTTAAGCGCATCCCATCCAAGGGAAGAAAGAACCCACTGCTCACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR TCA 90 bp | TGGCAGAATTGGTCTCAAGGGGTGTTAGAGGACTGGAATGAGACAGCTTGGACATTGCCACCTGTCACCTaGGGGTCCACATGCTGTCGA | + |
|
Preference number: 4 (lower is better) Translates to: WQNWSQGVLEDWNETAWTLPPVT*GSTCCR Trigger: TCGACAGCATGTGGACCCTCAGGTGACAGGTGGCAA...TGTCCAAGCTGTCTCATTCCAGTCCTCTAACACCCCTTGAGACCAATTCTGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR CCA 90 bp | TGGCAGAATTGGTCTCAAGGGGTGTTAGAGGACTGGAATGAGACAGCTTGGACAGTGCACTGGGACCTCTaGGTCACCCTCACAGGCAAT | + |
|
Preference number: 4 (lower is better) Translates to: WQNWSQGVLEDWNETAWTVHWDL*VTLTGN Trigger: ATTGCCTGTGAGGGTGACCCAGAGGTCCCAGTGCAC...TGTCCAAGCTGTCTCATTCCAGTCCTCTAACACCCCTTGAGACCAATTCTGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR CCA 90 bp | AGAGGCATCTCTCCAGCCCCTATTTCCAAACTCTTAGTGGCTTCCCTAATGATGTCTGTCAAAGTGCACTaGGACCTCTGGGTCACCCTC | + |
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Preference number: 4 (lower is better) Translates to: RGISPAPISKLLVASLMMSVKVH*DLWVTL Trigger: GAGGGTGACCCAGAGGTCCCAGTGCACTTTGACAGA...CATCATTAGGGAAGCCACTAAGAGTTTGGAAATAGGGGCTGGAGAGATGCCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR GCA 90 bp | TGTGAGCAGTGGGTTCTTTCTTCCCTTGGATGGGATGCGCTTAACACCATGGGTGGATATTGGTGGTACTaGAGATGCCACGAATGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: CEQWVLSSLGWDALNTMGGYWWY*RCHECS Trigger: GGAACATTCGTGGCATCTGCAGTACCACCAATATCC...ACCCATGGTGTTAAGCGCATCCCATCCAAGGGAAGAAAGAACCCACTGCTCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR CCA 90 bp | TGTGAGCAGTGGGTTCTTTCTTCCCTTGGATGGGATGCGCTTAACACCATGGGTTTCCAGATGTCTTCGTaGATGAAGGTGTTGAAGCGT | + |
|
Preference number: 4 (lower is better) Translates to: CEQWVLSSLGWDALNTMGFQMSS*MKVLKR Trigger: ACGCTTCAACACCTTCATCCACGAAGACATCTGGAA...ACCCATGGTGTTAAGCGCATCCCATCCAAGGGAAGAAAGAACCCACTGCTCACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR CCA 90 bp | CTTTCTTCCCTTGGATGGGATGCGCTTAACACCATGGGTTATATTGGATATATGGTGCACTGGGACCTCTaGGTCACCCTCACAGGCAAT | + |
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Preference number: 4 (lower is better) Translates to: LSSLGWDALNTMGYIGYMVHWDL*VTLTGN Trigger: ATTGCCTGTGAGGGTGACCCAGAGGTCCCAGTGCAC...CATATATCCAATATAACCCATGGTGTTAAGCGCATCCCATCCAAGGGAAGAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR CCA 90 bp | TTTCTTCCCTTGGATGGGATGCGCTTAACACCATGGGTTATATTGGATATATGTTACAGTTGGGGGCCTTaGAGTTCCCTGTCTCTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: FLPLDGMRLTPWVILDICYSWGP*SSLSLC Trigger: GCAGAGAGACAGGGAACTCCAAGGCCCCCAACTGTA...ACATATATCCAATATAACCCATGGTGTTAAGCGCATCCCATCCAAGGGAAGAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR CCA 90 bp | GGGTTATATTGGATATATGTGAGTATAAGGCACGAGCAAAGGAAACAAAGCCTGTCTGTCAAAGTGCACTaGGACCTCTGGGTCACCCTC | + |
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Preference number: 4 (lower is better) Translates to: GLYWIYVSIRHEQRKQSLSVKVH*DLWVTL Trigger: GAGGGTGACCCAGAGGTCCCAGTGCACTTTGACAGA...CAGGCTTTGTTTCCTTTGCTCGTGCCTTATACTCACATATATCCAATATAACCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR TCA 90 bp | CTTTCTTCCCTTGGATGGGATGCGCTTAACACCATGGGTTATATTGGATATATGTTCACTACACCTTCGTaGCAGTTCATCTGGCCGTTC | + |
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Preference number: 4 (lower is better) Translates to: LSSLGWDALNTMGYIGYMFTTPS*QFIWPF Trigger: GAACGGCCAGATGAACTGTCACGAAGGTGTAGTGAA...CATATATCCAATATAACCCATGGTGTTAAGCGCATCCCATCCAAGGGAAGAAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR GCA 90 bp | AGGACTGGAATGAGACAGCTTGGACAGAAAAGGCTCTCTATAATCGTTGAGATATGCAGTAGTTGTCATTaGCACCTGTCACCTGAGGGT | + |
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Preference number: 4 (lower is better) Translates to: RTGMRQLGQKRLSIIVEICSSCH*HLSPEG Trigger: ACCCTCAGGTGACAGGTGGCAATGACAACTACTGCA...TATCTCAACGATTATAGAGAGCCTTTTCTGTCCAAGCTGTCTCATTCCAGTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR TCA 90 bp | TTTCTTCCCTTGGATGGGATGCGCTTAACACCATGGGTTATATTGGATATATGTTTCACTACACCTTCGTaGCAGTTCATCTGGCCGTTC | + |
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Preference number: 4 (lower is better) Translates to: FLPLDGMRLTPWVILDICFTTPS*QFIWPF Trigger: GAACGGCCAGATGAACTGTCACGAAGGTGTAGTGAA...ACATATATCCAATATAACCCATGGTGTTAAGCGCATCCCATCCAAGGGAAGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR GCA 90 bp | ATGCGCTTAACACCATGGGTTATATTGGATATATGTGAGTATAAGGCACGAGCATGCAGTAGTTGTCATTaGCACCTGTCACCTGAGGGT | + |
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Preference number: 4 (lower is better) Translates to: MRLTPWVILDICEYKARACSSCH*HLSPEG Trigger: ACCCTCAGGTGACAGGTGGCAATGACAACTACTGCA...TGCTCGTGCCTTATACTCACATATATCCAATATAACCCATGGTGTTAAGCGCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR GCA 90 bp | ATGTATGTCTGTGTGAGGGTATCAAATCACCTAGAACTGGGTTACAGACAGTTGGGATATTGGTGGTACTaGAGATGCCACGAATGTTCC | + |
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Preference number: 4 (lower is better) Translates to: MYVCVRVSNHLELGYRQLGYWWY*RCHECS Trigger: GGAACATTCGTGGCATCTGCAGTACCACCAATATCC...CAACTGTCTGTAACCCAGTTCTAGGTGATTTGATACCCTCACACAGACATACAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR GCA 90 bp | ATGTATGTCTGTGTGAGGGTATCAAATCACCTAGAACTGGGTTACAGACAGTTGTCATCTGGCCGTTCTTaGACAGGATATTGGTGGTAC | + |
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Preference number: 4 (lower is better) Translates to: MYVCVRVSNHLELGYRQLSSGRS*TGYWWY Trigger: GTACCACCAATATCCTGTGCAAGAACGGCCAGATGA...CAACTGTCTGTAACCCAGTTCTAGGTGATTTGATACCCTCACACAGACATACAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| 3UTR CAA 72 bp | CCCTTGGATGGGATGCGCTTAACACCATGGGTTATATaGGATATATGTGAGTATAAGGCACGAGCAAAGGAA | + |
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Preference number: 4 (lower is better) Translates to: PLDGMRLTPWVI*DICEYKARAKE Trigger: TTCCTTTGCTCGTGCCTTATACTCACATATATCCAATATAACCCATGGTGTTAAGCGCATCCCATCCAAGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR GCA 90 bp | GGGTTATATTGGATATATGTGAGTATAAGGCACGAGCAAAGGAAACAAAGCCTGTGGTGGTACTGCAGATaGCACGAATGTTCCAGATGT | + |
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Preference number: 4 (lower is better) Translates to: GLYWIYVSIRHEQRKQSLWWYCR*HECSRC Trigger: ACATCTGGAACATTCGTGGCATCTGCAGTACCACCA...CAGGCTTTGTTTCCTTTGCTCGTGCCTTATACTCACATATATCCAATATAACCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR GCA 90 bp | TTTCTTCCCTTGGATGGGATGCGCTTAACACCATGGGTTATATTGGATATATGTTCATCTGGCCGTTCTTaGACAGGATATTGGTGGTAC | + |
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Preference number: 4 (lower is better) Translates to: FLPLDGMRLTPWVILDICSSGRS*TGYWWY Trigger: GTACCACCAATATCCTGTGCAAGAACGGCCAGATGA...ACATATATCCAATATAACCCATGGTGTTAAGCGCATCCCATCCAAGGGAAGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR CCA 90 bp | ATGTATGTCTGTGTGAGGGTATCAAATCACCTAGAACTGGGTTACAGACAGTTGTTGAAGCGTTTGCACTaGACAGAAGTCATCTTCCGT | + |
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Preference number: 4 (lower is better) Translates to: MYVCVRVSNHLELGYRQLLKRLH*TEVIFR Trigger: ACGGAAGATGACTTCTGTCCAGTGCAAACGCTTCAA...CAACTGTCTGTAACCCAGTTCTAGGTGATTTGATACCCTCACACAGACATACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR CCA 90 bp | GGGTTATATTGGATATATGTGAGTATAAGGCACGAGCAAAGGAAACAAAGCCTGTTGAAGCGTTTGCACTaGACAGAAGTCATCTTCCGT | + |
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Preference number: 4 (lower is better) Translates to: GLYWIYVSIRHEQRKQSLLKRLH*TEVIFR Trigger: ACGGAAGATGACTTCTGTCCAGTGCAAACGCTTCAA...CAGGCTTTGTTTCCTTTGCTCGTGCCTTATACTCACATATATCCAATATAACCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR CCA 90 bp | TTTCTTCCCTTGGATGGGATGCGCTTAACACCATGGGTTATATTGGATATATGTTTCCAGATGTCTTCGTaGATGAAGGTGTTGAAGCGT | + |
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Preference number: 4 (lower is better) Translates to: FLPLDGMRLTPWVILDICFQMSS*MKVLKR Trigger: ACGCTTCAACACCTTCATCCACGAAGACATCTGGAA...ACATATATCCAATATAACCCATGGTGTTAAGCGCATCCCATCCAAGGGAAGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS GCA 90 bp | TGGGTCACCCTCACAGGCAATGACAACTCGCCTAGTGCTGGTTCTTaGCCTGTATCTACAGTTGGGGGCCTTGGAGTTCCCTGTCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: WVTLTGNDNSPSAGS*PVSTVGGLGVPCLS Trigger: AGAGAGACAGGGAACTCCAAGGCCCCCAACTGTAGATACAGGGCAAGAACCAGCACTAGGCGAGTTGTCATTGCCTGTGAGGGTGACCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS GCA 90 bp | AAGTCATCTTCCGTCTCTGCATCATCACGTTGCAGTAGTTGTCATTaGCACCTGTCACCTGAGGGTCCACATGCTGTCGAAGGAACCGTT | + |
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Preference number: 5 (lower is better) Translates to: KSSSVSASSRCSSCH*HLSPEGPHAVEGTV Trigger: AACGGTTCCTTCGACAGCATGTGGACCCTCAGGTGACAGGTGGCAATGACAACTACTGCAACGTGATGATGCAGAGACGGAAGATGACTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS GCA 90 bp | GTTTGCACTGGACAGAAGTCATCTTCCGTCTCTGCATCATCACGTTaGAGTAGTTGTCATTGCCACCTGTCACCTGAGGGTCCACATGCT | + |
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Preference number: 5 (lower is better) Translates to: VCTGQKSSSVSASSR*SSCHCHLSPEGPHA Trigger: AGCATGTGGACCCTCAGGTGACAGGTGGCAATGACAACTACTGCAACGTGATGATGCAGAGACGGAAGATGACTTCTGTCCAGTGCAAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR CAA 90 bp | TGGCAGAATTGGTCTCAAGGGGTGTTAGAGGACTGGAATGAGACAGCTTGGACATTCATCTGGCCGTTCTaGCACAGGATATTGGTGGTA | + |
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Preference number: 5 (lower is better) Translates to: WQNWSQGVLEDWNETAWTFIWPF*HRILVV Trigger: TACCACCAATATCCTGTGCAAGAACGGCCAGATGAA...TGTCCAAGCTGTCTCATTCCAGTCCTCTAACACCCCTTGAGACCAATTCTGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS CCA 90 bp | ATATTGGTGGTACTGCAGATGCCACGAATGTTCCAGATGTCTTCGTaGATGAAGGTGTTGAAGCGTTTGCACTGGACAGAAGTCATCTTC | + |
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Preference number: 5 (lower is better) Translates to: ILVVLQMPRMFQMSS*MKVLKRLHWTEVIF Trigger: GAAGATGACTTCTGTCCAGTGCAAACGCTTCAACACCTTCATCCACGAAGACATCTGGAACATTCGTGGCATCTGCAGTACCACCAATAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR CAA 90 bp | AGGACTGGAATGAGACAGCTTGGACAGAAAAGGCTCTCTATAATCGTTGAGATATCGTGGATGAAGGTGTaGAAGCGTTTGCACTGGACA | + |
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Preference number: 5 (lower is better) Translates to: RTGMRQLGQKRLSIIVEISWMKV*KRLHWT Trigger: TGTCCAGTGCAAACGCTTCAACACCTTCATCCACGA...TATCTCAACGATTATAGAGAGCCTTTTCTGTCCAAGCTGTCTCATTCCAGTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR CAA 90 bp | GGGTTATATTGGATATATGTGAGTATAAGGCACGAGCAAAGGAAACAAAGCCTGTCGTGGATGAAGGTGTaGAAGCGTTTGCACTGGACA | + |
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Preference number: 5 (lower is better) Translates to: GLYWIYVSIRHEQRKQSLSWMKV*KRLHWT Trigger: TGTCCAGTGCAAACGCTTCAACACCTTCATCCACGA...CAGGCTTTGTTTCCTTTGCTCGTGCCTTATACTCACATATATCCAATATAACCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS-3UTR CAA 90 bp | ATGCGCTTAACACCATGGGTTATATTGGATATATGTGAGTATAAGGCACGAGCATTCATCTGGCCGTTCTaGCACAGGATATTGGTGGTA | + |
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Preference number: 5 (lower is better) Translates to: MRLTPWVILDICEYKARAFIWPF*HRILVV Trigger: TACCACCAATATCCTGTGCAAGAACGGCCAGATGAA...TGCTCGTGCCTTATACTCACATATATCCAATATAACCCATGGTGTTAAGCGCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS CAA 72 bp | GTGCTGGTTCTTGCCCTGTATCTACAGTTGGGGGCCTaGGAGTTCCCTGTCTCTCTGCAGTCCGTGACCTTC | + |
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Preference number: 6 (lower is better) Translates to: VLVLALYLQLGA*EFPVSLQSVTF Trigger: GAAGGTCACGGACTGCAGAGAGACAGGGAACTCCAAGGCCCCCAACTGTAGATACAGGGCAAGAACCAGCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS GCA 72 bp | CTCACAGGCAATGACAACTCGCCTAGTGCTGGTTCTTaGCCTGTATCTACAGTTGGGGGCCTTGGAGTTCCC | + |
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Preference number: 6 (lower is better) Translates to: LTGNDNSPSAGS*PVSTVGGLGVP Trigger: GGGAACTCCAAGGCCCCCAACTGTAGATACAGGGCAAGAACCAGCACTAGGCGAGTTGTCATTGCCTGTGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS CAA 72 bp | TGTCACCTGAGGGTCCACATGCTGTCGAAGGAACCGTaGGTACATTCGATCCTGGCCATAGGAGGGCTGTAC | + |
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Preference number: 6 (lower is better) Translates to: CHLRVHMLSKEP*VHSILAIGGLY Trigger: GTACAGCCCTCCTATGGCCAGGATCGAATGTACCAACGGTTCCTTCGACAGCATGTGGACCCTCAGGTGACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS GCA 72 bp | TCCGTCTCTGCATCATCACGTTGCAGTAGTTGTCATTaGCACCTGTCACCTGAGGGTCCACATGCTGTCGAA | + |
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Preference number: 6 (lower is better) Translates to: SVSASSRCSSCH*HLSPEGPHAVE Trigger: TTCGACAGCATGTGGACCCTCAGGTGACAGGTGGCAATGACAACTACTGCAACGTGATGATGCAGAGACGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS TCA 72 bp | GTCTCTCTGCAGTCCGTGACCTTCACTACACCTTCGTaGCAGTTCATCTGGCCGTTCTTGCACAGGATATTG | + |
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Preference number: 6 (lower is better) Translates to: VSLQSVTFTTPS*QFIWPFLHRIL Trigger: CAATATCCTGTGCAAGAACGGCCAGATGAACTGTCACGAAGGTGTAGTGAAGGTCACGGACTGCAGAGAGAC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS GCA 72 bp | GGACAGAAGTCATCTTCCGTCTCTGCATCATCACGTTaGAGTAGTTGTCATTGCCACCTGTCACCTGAGGGT | + |
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Preference number: 6 (lower is better) Translates to: GQKSSSVSASSR*SSCHCHLSPEG Trigger: ACCCTCAGGTGACAGGTGGCAATGACAACTACTGCAACGTGATGATGCAGAGACGGAAGATGACTTCTGTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS CAA 90 bp | CTGCAGATGCCACGAATGTTCCAGATGTCTTCGTGGATGAAGGTGTaGAAGCGTTTGCACTGGACAGAAGTCATCTTCCGTCTCTGCATC | + |
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Preference number: 6 (lower is better) Translates to: LQMPRMFQMSSWMKV*KRLHWTEVIFRLCI Trigger: GATGCAGAGACGGAAGATGACTTCTGTCCAGTGCAAACGCTTCAACACCTTCATCCACGAAGACATCTGGAACATTCGTGGCATCTGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS GCA 72 bp | TCATCTGGCCGTTCTTGCACAGGATATTGGTGGTACTaGAGATGCCACGAATGTTCCAGATGTCTTCGTGGA | + |
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Preference number: 6 (lower is better) Translates to: SSGRSCTGYWWY*RCHECSRCLRG Trigger: TCCACGAAGACATCTGGAACATTCGTGGCATCTGCAGTACCACCAATATCCTGTGCAAGAACGGCCAGATGA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS CAA 90 bp | CCACGAATGTTCCAGATGTCTTCGTGGATGAAGGTGTTGAAGCGTTaGCACTGGACAGAAGTCATCTTCCGTCTCTGCATCATCACGTTG | + |
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Preference number: 6 (lower is better) Translates to: PRMFQMSSWMKVLKR*HWTEVIFRLCIITL Trigger: CAACGTGATGATGCAGAGACGGAAGATGACTTCTGTCCAGTGCAAACGCTTCAACACCTTCATCCACGAAGACATCTGGAACATTCGTGG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS CCA 72 bp | ATGTCTTCGTGGATGAAGGTGTTGAAGCGTTTGCACTaGACAGAAGTCATCTTCCGTCTCTGCATCATCACG | + |
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Preference number: 6 (lower is better) Translates to: MSSWMKVLKRLH*TEVIFRLCIIT Trigger: CGTGATGATGCAGAGACGGAAGATGACTTCTGTCCAGTGCAAACGCTTCAACACCTTCATCCACGAAGACAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS CCA 72 bp | GACAGTTCATCTGGCCGTTCTTGCACAGGATATTGGTaGTACTGCAGATGCCACGAATGTTCCAGATGTCTT | + |
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Preference number: 6 (lower is better) Translates to: DSSSGRSCTGYW*YCRCHECSRCL Trigger: AAGACATCTGGAACATTCGTGGCATCTGCAGTACCACCAATATCCTGTGCAAGAACGGCCAGATGAACTGTC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS CAA 72 bp | TTCCAGATGTCTTCGTGGATGAAGGTGTTGAAGCGTTaGCACTGGACAGAAGTCATCTTCCGTCTCTGCATC | + |
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Preference number: 6 (lower is better) Translates to: FQMSSWMKVLKR*HWTEVIFRLCI Trigger: GATGCAGAGACGGAAGATGACTTCTGTCCAGTGCAAACGCTTCAACACCTTCATCCACGAAGACATCTGGAA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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| CDS CAA 72 bp | CCACGAATGTTCCAGATGTCTTCGTGGATGAAGGTGTaGAAGCGTTTGCACTGGACAGAAGTCATCTTCCGT | + |
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Preference number: 6 (lower is better) Translates to: PRMFQMSSWMKV*KRLHWTEVIFR Trigger: ACGGAAGATGACTTCTGTCCAGTGCAAACGCTTCAACACCTTCATCCACGAAGACATCTGGAACATTCGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022428.13 ENSMUST00000169895.3 |
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