Pregenerated sensors for RNASE13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068392Ensembl transcript IDs: ENSMUST00000089771.4
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGAAGGGAACTTGAGGTTGCGGGAGGTGTGGTGGGGGTGGAGGACTaGCTGACACTAAAAACAGGCCTAGGGAGAGATACTGGAGCTGGG | + |
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Preference number: 1 (lower is better) Translates to: GRELEVAGGVVGVED*LTLKTGLGRDTGAG Trigger: CCCAGCTCCAGTATCTCTCCCTAGGCCTGTTTTTAGTGTCAGCCAGTCCTCCACCCCCACCACACCTCCCGCAACCTCAAGTTCCCTTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR GCA 90 bp | CCTCCCTCCAGGAGTCGGGATCTGACCCAGCAGATACACAAGCACTaGCAGCTGGACACAGTCTGCTTCTTGGGTGGGTTTCACTGTCAC | + |
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Preference number: 1 (lower is better) Translates to: PPSRSRDLTQQIHKH*QLDTVCFLGGFHCH Trigger: GTGACAGTGAAACCCACCCAAGAAGCAGACTGTGTCCAGCTGGCAGTGCTTGTGTATCTGCTGGGTCAGATCCCGACTCCTGGAGGGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR CCA 90 bp | GCAGATACACAAGCACTGCCAGCTGGACACAGTCTGCTTCTTGGGTaGGTTTCACTGTCACTGGGAGAGGAAGGCTCATGGTGGGGGCCA | + |
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Preference number: 1 (lower is better) Translates to: ADTQALPAGHSLLLG*VSLSLGEEGSWWGP Trigger: TGGCCCCCACCATGAGCCTTCCTCTCCCAGTGACAGTGAAACCCACCCAAGAAGCAGACTGTGTCCAGCTGGCAGTGCTTGTGTATCTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR CCA 90 bp | CCCAGCAGATACACAAGCACTGCCAGCTGGACACAGTCTGCTTCTTaGGTGGGTTTCACTGTCACTGGGAGAGGAAGGCTCATGGTGGGG | + |
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Preference number: 1 (lower is better) Translates to: PSRYTSTASWTQSAS*VGFTVTGRGRLMVG Trigger: CCCCACCATGAGCCTTCCTCTCCCAGTGACAGTGAAACCCACCCAAGAAGCAGACTGTGTCCAGCTGGCAGTGCTTGTGTATCTGCTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR GCA 90 bp | CCTGAAGGAGGGCGGGGTTCTGCTTCAGATGTCAGGAGGAAGACTTaGAGACAGACTCAGAGTTTGGGAACGGGCCTTCGTGTGGCATGT | + |
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Preference number: 1 (lower is better) Translates to: PEGGRGSASDVRRKT*RQTQSLGTGLRVAC Trigger: ACATGCCACACGAAGGCCCGTTCCCAAACTCTGAGTCTGTCTGCAAGTCTTCCTCCTGACATCTGAAGCAGAACCCCGCCCTCCTTCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR CCA 90 bp | CTGCTTCAGATGTCAGGAGGAAGACTTGCAGACAGACTCAGAGTTTaGGAACGGGCCTTCGTGTGGCATGTAGAGGCCTGTAGTAGGTGG | + |
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Preference number: 1 (lower is better) Translates to: LLQMSGGRLADRLRV*ERAFVWHVEACSRW Trigger: CCACCTACTACAGGCCTCTACATGCCACACGAAGGCCCGTTCCCAAACTCTGAGTCTGTCTGCAAGTCTTCCTCCTGACATCTGAAGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR CCA 90 bp | GGACCGAGGGACCTTGGAAAGGACAAGAACGATCATTTGAAATTGTaGGGGGCCAAGGTGAGAGAGATGGAGGACAGTGGTTGGAAACAG | + |
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Preference number: 1 (lower is better) Translates to: GPRDLGKDKNDHLKL*GAKVREMEDSGWKQ Trigger: CTGTTTCCAACCACTGTCCTCCATCTCTCTCACCTTGGCCCCCCACAATTTCAAATGATCGTTCTTGTCCTTTCCAAGGTCCCTCGGTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR CAA 90 bp | GAGGCAAACGGGCCTGAGGTTCTTATTGCCGGAGCGTGGCAGGAATaGGAAGGGAACTTGAGGTTGCGGGAGGTGTGGTGGGGGTGGAGG | + |
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Preference number: 2 (lower is better) Translates to: EANGPEVLIAGAWQE*EGNLRLREVWWGWR Trigger: CCTCCACCCCCACCACACCTCCCGCAACCTCAAGTTCCCTTCCAATTCCTGCCACGCTCCGGCAATAAGAACCTCAGGCCCGTTTGCCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR CAA 90 bp | ACCCAGCAGATACACAAGCACTGCCAGCTGGACACAGTCTGCTTCTaGGGTGGGTTTCACTGTCACTGGGAGAGGAAGGCTCATGGTGGG | + |
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Preference number: 2 (lower is better) Translates to: TQQIHKHCQLDTVCF*GGFHCHWERKAHGG Trigger: CCCACCATGAGCCTTCCTCTCCCAGTGACAGTGAAACCCACCCAAGAAGCAGACTGTGTCCAGCTGGCAGTGCTTGTGTATCTGCTGGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR-3UTR GCA 90 bp | TTCCCCTGTCACCTGAGTGAAAGAGATAAGGGGGTTCAGAGGGACCGAGGGACCCAGCTGGACACAGTCTaGTTCTTGGGTGGGTTTCAC | + |
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Preference number: 2 (lower is better) Translates to: FPCHLSERDKGVQRDRGTQLDTV*FLGGFH Trigger: GTGAAACCCACCCAAGAAGCAGACTGTGTCCAGCTG...GGTCCCTCGGTCCCTCTGAACCCCCTTATCTCTTTCACTCAGGTGACAGGGGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR-3UTR CCA 90 bp | CATGCGCCCCCTGCCCAGTTTCCCACAGTGGTTTTTACACAGAACATGACTGGGGTGGGGGTGGAGGACTaGCTGACACTAAAAACAGGC | + |
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Preference number: 2 (lower is better) Translates to: HAPPAQFPTVVFTQNMTGVGVED*LTLKTG Trigger: GCCTGTTTTTAGTGTCAGCCAGTCCTCCACCCCCAC...CCCAGTCATGTTCTGTGTAAAAACCACTGTGGGAAACTGGGCAGGGGGCGCATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 24 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR-3UTR GCA 90 bp | CATGCGCCCCCTGCCCAGTTTCCCACAGTGGTTTTTACACAGAACATGACTGGGGATACTGGAGCTGGGTaGCTGTTGCCATGGTGTGAT | + |
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Preference number: 2 (lower is better) Translates to: HAPPAQFPTVVFTQNMTGDTGAG*LLPWCD Trigger: ATCACACCATGGCAACAGGCACCCAGCTCCAGTATC...CCCAGTCATGTTCTGTGTAAAAACCACTGTGGGAAACTGGGCAGGGGGCGCATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR CAA 90 bp | AGATGGAGGACAGTGGTTGGAAACAGGCAGGCAGCATGGCTAACGTaGGTTGGGAAAGTCAGGGAAAACAGTACTAGGCTCCATGGTGGG | + |
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Preference number: 2 (lower is better) Translates to: RWRTVVGNRQAAWLT*VGKVRENSTRLHGG Trigger: CCCACCATGGAGCCTAGTACTGTTTTCCCTGACTTTCCCAACCAACGTTAGCCATGCTGCCTGCCTGTTTCCAACCACTGTCCTCCATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR-3UTR CCA 90 bp | AGAAGGATGGGTTATATGAAGGGAAAGGGGAAATCACAGATTAGTACAGGCTGGTGCCATGGTGTGATCTaGGGCCTGGGCCTCCCTCCA | + |
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Preference number: 2 (lower is better) Translates to: RRMGYMKGKGKSQISTGWCHGVI*GLGLPP Trigger: TGGAGGGAGGCCCAGGCCCCAGATCACACCATGGCA...CCAGCCTGTACTAATCTGTGATTTCCCCTTTCCCTTCATATAACCCATCCTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR-3UTR CCA 90 bp | AGGATGGGTTATATGAAGGGAAAGGGGAAATCACAGATTAGTACAGGCTGGAGAGGGTGCCTGTTGCCATaGTGTGATCTGGGGCCTGGG | + |
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Preference number: 2 (lower is better) Translates to: RMGYMKGKGKSQISTGWRGCLLP*CDLGPG Trigger: CCCAGGCCCCAGATCACACCATGGCAACAGGCACCC...TCTCCAGCCTGTACTAATCTGTGATTTCCCCTTTCCCTTCATATAACCCATCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR-3UTR TCA 90 bp | AGGATGGGTTATATGAAGGGAAAGGGGAAATCACAGATTAGTACAGGCTGGAGAGGAGGCAAACGGGCCTaGGGTTCTTATTGCCGGAGC | + |
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Preference number: 2 (lower is better) Translates to: RMGYMKGKGKSQISTGWRGGKRA*GSYCRS Trigger: GCTCCGGCAATAAGAACCTCAGGCCCGTTTGCCTCC...TCTCCAGCCTGTACTAATCTGTGATTTCCCCTTTCCCTTCATATAACCCATCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR-3UTR CCA 90 bp | AGGATGGGTTATATGAAGGGAAAGGGGAAATCACAGATTAGTACAGGCTGGAGAGAGAGATACTGGAGCTaGGTGCCTGTTGCCATGGTG | + |
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Preference number: 2 (lower is better) Translates to: RMGYMKGKGKSQISTGWRERYWS*VPVAMV Trigger: CACCATGGCAACAGGCACCCAGCTCCAGTATCTCTC...TCTCCAGCCTGTACTAATCTGTGATTTCCCCTTTCCCTTCATATAACCCATCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR-3UTR TCA 90 bp | TTAAGAAATGAGTACAGATTCACAAGAAGTCAGTCTAAAAAGGGGCTCATGCGCTCTTCCCCTGTCACCTaGGTGAAAGAGATAAGGGGG | + |
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Preference number: 2 (lower is better) Translates to: LRNEYRFTRSQSKKGLMRSSPVT*VKEIRG Trigger: CCCCCTTATCTCTTTCACTCAGGTGACAGGGGAAGA...GCGCATGAGCCCCTTTTTAGACTGACTTCTTGTGAATCTGTACTCATTTCTTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR-3UTR CCA 90 bp | TTAAGAAATGAGTACAGATTCACAAGAAGTCAGTCTAAAAAGGGGCTCATGCGCATGGAGGACAGTGGTTaGAAACAGGCAGGCAGCATG | + |
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Preference number: 2 (lower is better) Translates to: LRNEYRFTRSQSKKGLMRMEDSG*KQAGSM Trigger: CATGCTGCCTGCCTGTTTCCAACCACTGTCCTCCAT...GCGCATGAGCCCCTTTTTAGACTGACTTCTTGTGAATCTGTACTCATTTCTTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR TCA 72 bp | AGACTGGGGGCTGTGGGAAAGGGAGGCAAACGGGCCTaGGGTTCTTATTGCCGGAGCGTGGCAGGAATTGGA | + |
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Preference number: 3 (lower is better) Translates to: RLGAVGKGGKRA*GSYCRSVAGIG Trigger: TCCAATTCCTGCCACGCTCCGGCAATAAGAACCTCAGGCCCGTTTGCCTCCCTTTCCCACAGCCCCCAGTCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR-3UTR CAA 90 bp | TTCCCCTGTCACCTGAGTGAAAGAGATAAGGGGGTTCAGAGGGACCGAGGGACCGAATTGGAAGGGAACTaGAGGTTGCGGGAGGTGTGG | + |
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Preference number: 3 (lower is better) Translates to: FPCHLSERDKGVQRDRGTELEGN*RLREVW Trigger: CCACACCTCCCGCAACCTCAAGTTCCCTTCCAATTC...GGTCCCTCGGTCCCTCTGAACCCCCTTATCTCTTTCACTCAGGTGACAGGGGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR GCA 72 bp | GGGCGGGGTTCTGCTTCAGATGTCAGGAGGAAGACTTaGAGACAGACTCAGAGTTTGGGAACGGGCCTTCGT | + |
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Preference number: 3 (lower is better) Translates to: GRGSASDVRRKT*RQTQSLGTGLR Trigger: ACGAAGGCCCGTTCCCAAACTCTGAGTCTGTCTGCAAGTCTTCCTCCTGACATCTGAAGCAGAACCCCGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR CCA 72 bp | CAAGCACTGCCAGCTGGACACAGTCTGCTTCTTGGGTaGGTTTCACTGTCACTGGGAGAGGAAGGCTCATGG | + |
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Preference number: 3 (lower is better) Translates to: QALPAGHSLLLG*VSLSLGEEGSW Trigger: CCATGAGCCTTCCTCTCCCAGTGACAGTGAAACCCACCCAAGAAGCAGACTGTGTCCAGCTGGCAGTGCTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR CCA 72 bp | CCAGTTTCCCACAGTGGTTTTTACACAGAACATGACTaGGGCTGGGACTGCCTCTTCCCCTGTCACCTGAGT | + |
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Preference number: 3 (lower is better) Translates to: PVSHSGFYTEHD*GWDCLFPCHLS Trigger: ACTCAGGTGACAGGGGAAGAGGCAGTCCCAGCCCCAGTCATGTTCTGTGTAAAAACCACTGTGGGAAACTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR CCA 72 bp | AGATGGAGGACAGTGGTTGGAAACAGGCAGGCAGCATaGCTAACGTTGGTTGGGAAAGTCAGGGAAAACAGT | + |
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Preference number: 3 (lower is better) Translates to: RWRTVVGNRQAA*LTLVGKVRENS Trigger: ACTGTTTTCCCTGACTTTCCCAACCAACGTTAGCCATGCTGCCTGCCTGTTTCCAACCACTGTCCTCCATCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR-3UTR CAA 90 bp | TTAAGAAATGAGTACAGATTCACAAGAAGTCAGTCTAAAAAGGGGCTCATGCGCGGAGCTGGGTGCCTGTaGCCATGGTGTGATCTGGGG | + |
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Preference number: 3 (lower is better) Translates to: LRNEYRFTRSQSKKGLMRGAGCL*PWCDLG Trigger: CCCCAGATCACACCATGGCAACAGGCACCCAGCTCC...GCGCATGAGCCCCTTTTTAGACTGACTTCTTGTGAATCTGTACTCATTTCTTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR CCA 72 bp | GACCTTGGAAAGGACAAGAACGATCATTTGAAATTGTaGGGGGCCAAGGTGAGAGAGATGGAGGACAGTGGT | + |
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Preference number: 3 (lower is better) Translates to: DLGKDKNDHLKL*GAKVREMEDSG Trigger: ACCACTGTCCTCCATCTCTCTCACCTTGGCCCCCCACAATTTCAAATGATCGTTCTTGTCCTTTCCAAGGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR CCA 72 bp | AAAGAGATAAGGGGGTTCAGAGGGACCGAGGGACCTTaGAAAGGACAAGAACGATCATTTGAAATTGTGGGG | + |
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Preference number: 3 (lower is better) Translates to: KEIRGFRGTEGP*KGQERSFEIVG Trigger: CCCCACAATTTCAAATGATCGTTCTTGTCCTTTCCAAGGTCCCTCGGTCCCTCTGAACCCCCTTATCTCTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR CAA 72 bp | CTTATTGCCGGAGCGTGGCAGGAATTGGAAGGGAACTaGAGGTTGCGGGAGGTGTGGTGGGGGTGGAGGACT | + |
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Preference number: 4 (lower is better) Translates to: LIAGAWQELEGN*RLREVWWGWRT Trigger: AGTCCTCCACCCCCACCACACCTCCCGCAACCTCAAGTTCCCTTCCAATTCCTGCCACGCTCCGGCAATAAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS-3UTR CCA 90 bp | CATGCGCCCCCTGCCCAGTTTCCCACAGTGGTTTTTACACAGAACATGACTGGGGCCTGTCACCAGAGTTaGCCGGAAGACAAGCGGGAG | + |
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Preference number: 4 (lower is better) Translates to: HAPPAQFPTVVFTQNMTGACHQS*PEDKRE Trigger: CTCCCGCTTGTCTTCCGGCCAACTCTGGTGACAGGC...CCCAGTCATGTTCTGTGTAAAAACCACTGTGGGAAACTGGGCAGGGGGCGCATG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS-3UTR GCA 90 bp | CTTGCAGACAGACTCAGAGTTTGGGAACGGGCCTTCGTGTGGCATGTAGAGGCCGCTACAGCTGGTTGGTaGCTGTTGATGAACCAGGGT | + |
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Preference number: 4 (lower is better) Translates to: LADRLRVWERAFVWHVEAATAGW*LLMNQG Trigger: ACCCTGGTTCATCAACAGGCACCAACCAGCTGTAGC...GGCCTCTACATGCCACACGAAGGCCCGTTCCCAAACTCTGAGTCTGTCTGCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS-3UTR GCA 90 bp | CTTGCAGACAGACTCAGAGTTTGGGAACGGGCCTTCGTGTGGCATGTAGAGGCCATAGGCTCAGCATCATaGTTGCGGGAGCAGAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: LADRLRVWERAFVWHVEAIGSAS*LREQSK Trigger: CTTGCTCTGCTCCCGCAAGCATGATGCTGAGCCTAT...GGCCTCTACATGCCACACGAAGGCCCGTTCCCAAACTCTGAGTCTGTCTGCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS-3UTR TCA 90 bp | AGAGAGATGGAGGACAGTGGTTGGAAACAGGCAGGCAGCATGGCTAACGTTGGTGGAAGGAGTTCTGAGTaGGGGTGCAGTACTCGTTGT | + |
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Preference number: 4 (lower is better) Translates to: REMEDSGWKQAGSMANVGGRSSE*GCSTRC Trigger: ACAACGAGTACTGCACCCTCACTCAGAACTCCTTCC...ACCAACGTTAGCCATGCTGCCTGCCTGTTTCCAACCACTGTCCTCCATCTCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS-3UTR GCA 90 bp | AAGGTGAGAGAGATGGAGGACAGTGGTTGGAAACAGGCAGGCAGCATGGCTAACGCTCAGCATCATGCTTaGGGGAGCAGAGCAAGTACA | + |
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Preference number: 4 (lower is better) Translates to: KVREMEDSGWKQAGSMANAQHHA*GSRAST Trigger: TGTACTTGCTCTGCTCCCGCAAGCATGATGCTGAGC...GTTAGCCATGCTGCCTGCCTGTTTCCAACCACTGTCCTCCATCTCTCTCACCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS-3UTR CCA 90 bp | AAGGTGAGAGAGATGGAGGACAGTGGTTGGAAACAGGCAGGCAGCATGGCTAACTCCGTGGAATCCCTTTaGGTAGTTAACCATGGGGTA | + |
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Preference number: 4 (lower is better) Translates to: KVREMEDSGWKQAGSMANSVESL*VVNHGV Trigger: TACCCCATGGTTAACTACCCAAAGGGATTCCACGGA...GTTAGCCATGCTGCCTGCCTGTTTCCAACCACTGTCCTCCATCTCTCTCACCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS-3UTR CCA 90 bp | CTTGCAGACAGACTCAGAGTTTGGGAACGGGCCTTCGTGTGGCATGTAGAGGCCTGTTATAGCTACAGCTaGTTGGTGCCTGTTGATGAA | + |
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Preference number: 4 (lower is better) Translates to: LADRLRVWERAFVWHVEACYSYS*LVPVDE Trigger: TTCATCAACAGGCACCAACCAGCTGTAGCTATAACA...GGCCTCTACATGCCACACGAAGGCCCGTTCCCAAACTCTGAGTCTGTCTGCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| 3UTR CAA 72 bp | ACAGTGGTTGGAAACAGGCAGGCAGCATGGCTAACGTaGGTTGGGAAAGTCAGGGAAAACAGTACTAGGCTC | + |
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Preference number: 4 (lower is better) Translates to: TVVGNRQAAWLT*VGKVRENSTRL Trigger: GAGCCTAGTACTGTTTTCCCTGACTTTCCCAACCAACGTTAGCCATGCTGCCTGCCTGTTTCCAACCACTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS-3UTR CCA 90 bp | AGGATGGGTTATATGAAGGGAAAGGGGAAATCACAGATTAGTACAGGCTGGAGAAGTACAGCCTTTGGTTaGTCAGGGTGCTGTTATAGC | + |
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Preference number: 4 (lower is better) Translates to: RMGYMKGKGKSQISTGWRSTAFG*SGCCYS Trigger: GCTATAACAGCACCCTGACCAACCAAAGGCTGTACT...TCTCCAGCCTGTACTAATCTGTGATTTCCCCTTTCCCTTCATATAACCCATCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS-3UTR CCA 90 bp | TTAAGAAATGAGTACAGATTCACAAGAAGTCAGTCTAAAAAGGGGCTCATGCGCTATTTACAGAACTTCTaGATGTCTTCCAAGGGGGCG | + |
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Preference number: 4 (lower is better) Translates to: LRNEYRFTRSQSKKGLMRYLQNF*MSSKGA Trigger: CGCCCCCTTGGAAGACATCCAGAAGTTCTGTAAATA...GCGCATGAGCCCCTTTTTAGACTGACTTCTTGTGAATCTGTACTCATTTCTTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS-3UTR CAA 90 bp | GGGAGAGGAAGGCTCATGGTGGGGGCCATGAGAAGGCGAAAGAGCCTGAAGGAGGGCTCAGCATCATGCTaGCGGGAGCAGAGCAAGTAC | + |
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Preference number: 5 (lower is better) Translates to: GRGRLMVGAMRRRKSLKEGSASC*REQSKY Trigger: GTACTTGCTCTGCTCCCGCAAGCATGATGCTGAGCC...CTCCTTCAGGCTCTTTCGCCTTCTCATGGCCCCCACCATGAGCCTTCCTCTCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS CCA 90 bp | GAAGTTCTTGATGGCCGTCTGAATTGTGATGCCTGTCACCAGAGTTaGCCGGAAGACAAGCGGGAGGACAAGGAGCCAGGCCACATCTGG | + |
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Preference number: 5 (lower is better) Translates to: EVLDGRLNCDACHQS*PEDKREDKEPGHIW Trigger: CCAGATGTGGCCTGGCTCCTTGTCCTCCCGCTTGTCTTCCGGCCAACTCTGGTGACAGGCATCACAATTCAGACGGCCATCAAGAACTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS-3UTR CAA 90 bp | GGAGGGCGGGGTTCTGCTTCAGATGTCAGGAGGAAGACTTGCAGACAGACTCAGGAGCAAGTACAGCCTTaGGTTGGTCAGGGTGCTGTT | + |
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Preference number: 5 (lower is better) Translates to: GGRGSASDVRRKTCRQTQEQVQP*VGQGAV Trigger: AACAGCACCCTGACCAACCAAAGGCTGTACTTGCTC...CTGAGTCTGTCTGCAAGTCTTCCTCCTGACATCTGAAGCAGAACCCCGCCCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS GCA 90 bp | CATGCTTGCGGGAGCAGAGCAAGTACAGCCTTTGGTTGGTCAGGGTaGTGTTATAGCTACAGCTGGTTGGTGCCTGTTGATGAACCAGGG | + |
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Preference number: 5 (lower is better) Translates to: HACGSRASTAFGWSG*CYSYSWLVPVDEPG Trigger: CCCTGGTTCATCAACAGGCACCAACCAGCTGTAGCTATAACAGCACCCTGACCAACCAAAGGCTGTACTTGCTCTGCTCCCGCAAGCATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS-3UTR CAA 90 bp | AAGGTGAGAGAGATGGAGGACAGTGGTTGGAAACAGGCAGGCAGCATGGCTAACGCTGGTTGGTGCCTGTaGATGAACCAGGGTGCAGAT | + |
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Preference number: 5 (lower is better) Translates to: KVREMEDSGWKQAGSMANAGWCL*MNQGAD Trigger: ATCTGCACCCTGGTTCATCAACAGGCACCAACCAGC...GTTAGCCATGCTGCCTGCCTGTTTCCAACCACTGTCCTCCATCTCTCTCACCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS CCA 90 bp | GCTCAGCATCATGCTTGCGGGAGCAGAGCAAGTACAGCCTTTGGTTaGTCAGGGTGCTGTTATAGCTACAGCTGGTTGGTGCCTGTTGAT | + |
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Preference number: 5 (lower is better) Translates to: AQHHACGSRASTAFG*SGCCYSYSWLVPVD Trigger: ATCAACAGGCACCAACCAGCTGTAGCTATAACAGCACCCTGACCAACCAAAGGCTGTACTTGCTCTGCTCCCGCAAGCATGATGCTGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS CCA 72 bp | CATGCTTGCGGGAGCAGAGCAAGTACAGCCTTTGGTTaGTCAGGGTGCTGTTATAGCTACAGCTGGTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: HACGSRASTAFG*SGCCYSYSWLV Trigger: CACCAACCAGCTGTAGCTATAACAGCACCCTGACCAACCAAAGGCTGTACTTGCTCTGCTCCCGCAAGCATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS CAA 72 bp | CAGGGTGCTGTTATAGCTACAGCTGGTTGGTGCCTGTaGATGAACCAGGGTGCAGATTGTGACGGGGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: QGAVIATAGWCL*MNQGADCDGEG Trigger: TCCTTCCCCGTCACAATCTGCACCCTGGTTCATCAACAGGCACCAACCAGCTGTAGCTATAACAGCACCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS CAA 90 bp | TATAGGCTCAGCATCATGCTTGCGGGAGCAGAGCAAGTACAGCCTTaGGTTGGTCAGGGTGCTGTTATAGCTACAGCTGGTTGGTGCCTG | + |
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Preference number: 6 (lower is better) Translates to: YRLSIMLAGAEQVQP*VGQGAVIATAGWCL Trigger: CAGGCACCAACCAGCTGTAGCTATAACAGCACCCTGACCAACCAAAGGCTGTACTTGCTCTGCTCCCGCAAGCATGATGCTGAGCCTATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS CAA 72 bp | AGCATCATGCTTGCGGGAGCAGAGCAAGTACAGCCTTaGGTTGGTCAGGGTGCTGTTATAGCTACAGCTGGT | + |
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Preference number: 6 (lower is better) Translates to: SIMLAGAEQVQP*VGQGAVIATAG Trigger: ACCAGCTGTAGCTATAACAGCACCCTGACCAACCAAAGGCTGTACTTGCTCTGCTCCCGCAAGCATGATGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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| CDS CCA 72 bp | TTGGTTGGTCAGGGTGCTGTTATAGCTACAGCTGGTTaGTGCCTGTTGATGAACCAGGGTGCAGATTGTGAC | + |
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Preference number: 6 (lower is better) Translates to: LVGQGAVIATAG*CLLMNQGADCD Trigger: GTCACAATCTGCACCCTGGTTCATCAACAGGCACCAACCAGCTGTAGCTATAACAGCACCCTGACCAACCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089771.4 |
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