Pregenerated sensors for RNASE1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035896Ensembl transcript IDs: ENSMUST00000080126.4
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CATCTTGCTTCATTTGTCTACAGCAAGAGAGGGATCTGGGAGCATGACACAGGAATGGAAGTCCTAACATaGCTTACTTCTTTCAGAGAA | + |
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Preference number: 2 (lower is better) Translates to: HLASFVYSKRGIWEHDTGMEVLT*LTSFRE Trigger: TTCTCTGAAAGAAGTAAGTCATGTTAGGACTTCCAT...TCCTGTGTCATGCTCCCAGATCCCTCTCTTGCTGTAGACAAATGAAGCAAGATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| 3UTR-3UTR GCA 90 bp | AAGTCTAGTTTCAATAGTGTAGTTAAAGTAGTCAGGAGTGAGGAAATTCTGGACTCGAACTGCCCTAAATaGACAATTTATGATGAACAG | + |
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Preference number: 2 (lower is better) Translates to: KSSFNSVVKVVRSEEILDSNCPK*TIYDEQ Trigger: CTGTTCATCATAAATTGTGCATTTAGGGCAGTTCGA...GTCCAGAATTTCCTCACTCCTGACTACTTTAACTACACTATTGAAACTAGACTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| 3UTR-3UTR CAA 90 bp | TTGTCTACAGCAAGAGAGGGATCTGGGAGCATGACACAGGACAGGAACGCATGTAGACAGGTGATGAGGTaGGGAGACATAGACATCTCA | + |
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Preference number: 3 (lower is better) Translates to: LSTAREGSGSMTQDRNACRQVMR*GDIDIS Trigger: TGAGATGTCTATGTCTCCCAACCTCATCACCTGTCT...ACATGCGTTCCTGTCCTGTGTCATGCTCCCAGATCCCTCTCTTGCTGTAGACAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| 3UTR CCA 72 bp | CATCTTGCTTCATTTGTCTACAGCAAGAGAGGGATCTaGGAGCATGACACAGGACAGGAACGCATGTTTTGT | + |
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Preference number: 3 (lower is better) Translates to: HLASFVYSKRGI*EHDTGQERMFC Trigger: ACAAAACATGCGTTCCTGTCCTGTGTCATGCTCCCAGATCCCTCTCTTGCTGTAGACAAATGAAGCAAGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS-3UTR CCA 90 bp | TTGTCTACAGCAAGAGAGGGATCTGGGAGCATGACACAGGACAGGAACGCATGTTGGGAGCAGACAGCCTaGACATCTGCCAAGGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: LSTAREGSGSMTQDRNACWEQTA*TSAKGS Trigger: TGAGCCCTTGGCAGATGTCCAGGCTGTCTGCTCCCA...ACATGCGTTCCTGTCCTGTGTCATGCTCCCAGATCCCTCTCTTGCTGTAGACAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS-3UTR CCA 90 bp | GAGGGATCTGGGAGCATGACACAGGACAGGAACGCATGTTTTGTCATATGGAAGAGCATCAAAGTGGACTaGTACGTAGGGGTTCCCTTC | + |
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Preference number: 4 (lower is better) Translates to: EGSGSMTQDRNACFVIWKSIKVD*YVGVPF Trigger: GAAGGGAACCCCTACGTACCAGTCCACTTTGATGCT...CTTCCATATGACAAAACATGCGTTCCTGTCCTGTGTCATGCTCCCAGATCCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| 3UTR CAA 72 bp | AAGGGACATGTTCTGGTGAGGGCCATCTTGCTTCATTaGTCTACAGCAAGAGAGGGATCTGGGAGCATGACA | + |
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Preference number: 4 (lower is better) Translates to: KGHVLVRAILLH*STAREGSGSMT Trigger: TGTCATGCTCCCAGATCCCTCTCTTGCTGTAGACAAATGAAGCAAGATGGCCCTCACCAGAACATGTCCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS-3UTR TCA 90 bp | CATCTTGCTTCATTTGTCTACAGCAAGAGAGGGATCTGGGAGCATGACACAGGATCCTGTTCTTGCAGGTaGCATTTTCCTGGGAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: HLASFVYSKRGIWEHDTGSCSCR*HFPGSR Trigger: TCTGCTCCCAGGAAAATGTCACCTGCAAGAACAGGA...TCCTGTGTCATGCTCCCAGATCCCTCTCTTGCTGTAGACAAATGAAGCAAGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS-3UTR TCA 90 bp | TTGCTTCATTTGTCTACAGCAAGAGAGGGATCTGGGAGCATGACACAGGACAGGCTTCACAGGCCACAATaGTGTGCTTCTGGTATTGAG | + |
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Preference number: 4 (lower is better) Translates to: LLHLSTAREGSGSMTQDRLHRPQ*CASGIE Trigger: CTCAATACCAGAAGCACATCATTGTGGCCTGTGAAG...CCTGTCCTGTGTCATGCTCCCAGATCCCTCTCTTGCTGTAGACAAATGAAGCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS-3UTR TCA 90 bp | AAGTCTAGTTTCAATAGTGTAGTTAAAGTAGTCAGGAGTGAGGAAATTCTGGACTCAGGTGGCAGTCAGTaGTGTGCAGGGCAGAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: KSSFNSVVKVVRSEEILDSGGSQ*CAGQSC Trigger: GCAGCTCTGCCCTGCACATCACTGACTGCCACCTGA...GTCCAGAATTTCCTCACTCCTGACTACTTTAACTACACTATTGAAACTAGACTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS-3UTR TCA 90 bp | GGTTGTTTTCTAAAGTCAAGAAAGTCTAAGGTTGAAGGGACATGTTCTGGTGAGTCCATGTGCTGCCGCTaGAACTTCTGTGCTGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: GCFLKSRKSKVEGTCSGESMCCR*NFCAAD Trigger: ATCTGCAGCACAGAAGTTTCAGCGGCAGCACATGGA...CTCACCAGAACATGTCCCTTCAACCTTAGACTTTCTTGACTTTAGAAAACAACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS-3UTR CCA 90 bp | GAGGCAGAAAAGTCTAGTTTCAATAGTGTAGTTAAAGTAGTCAGGAGTGAGGAACAGGTGACATTTTCCTaGGAGCAGACAGCCTGGACA | + |
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Preference number: 4 (lower is better) Translates to: EAEKSSFNSVVKVVRSEEQVTFS*EQTAWT Trigger: TGTCCAGGCTGTCTGCTCCCAGGAAAATGTCACCTG...TTCCTCACTCCTGACTACTTTAACTACACTATTGAAACTAGACTTTTCTGCCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS-3UTR CCA 90 bp | AAGTCTAGTTTCAATAGTGTAGTTAAAGTAGTCAGGAGTGAGGAAATTCTGGACGAGTTGCCCTTCAGGTaGCAGTCAGTGATGTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: KSSFNSVVKVVRSEEILDELPFR*QSVMCR Trigger: CCTGCACATCACTGACTGCCACCTGAAGGGCAACTC...GTCCAGAATTTCCTCACTCCTGACTACTTTAACTACACTATTGAAACTAGACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS-3UTR TCA 90 bp | GAGGCAGAAAAGTCTAGTTTCAATAGTGTAGTTAAAGTAGTCAGGAGTGAGGAAACAATGGAAACAGAATaGGGGACTTCTCCAGACCCA | + |
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Preference number: 4 (lower is better) Translates to: EAEKSSFNSVVKVVRSEETMETE*GTSPDP Trigger: TGGGTCTGGAGAAGTCCCTCATTCTGTTTCCATTGT...TTCCTCACTCCTGACTACTTTAACTACACTATTGAAACTAGACTTTTCTGCCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS-3UTR CCA 90 bp | TGTTTTCTAAAGTCAAGAAAGTCTAAGGTTGAAGGGACATGTTCTGGTGAGGGCCAGCAGGACAAACAATaGAAACAGAATGAGGGACTT | + |
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Preference number: 4 (lower is better) Translates to: CFLKSRKSKVEGTCSGEGQQDKQ*KQNEGL Trigger: AAGTCCCTCATTCTGTTTCCATTGTTTGTCCTGCTG...GCCCTCACCAGAACATGTCCCTTCAACCTTAGACTTTCTTGACTTTAGAAAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS-3UTR GCA 90 bp | TCCACTTCGAACTGCCCTAAATGCACAATTTATGATGAACAGAATTTTATTTGGTGCTCTTGTAGCAGTTaGTCTTCCTGTTCTTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: STSNCPKCTIYDEQNFIWCSCSS*SSCSCR Trigger: CCTGCAAGAACAGGAAGAGCAACTGCTACAAGAGCA...CCAAATAAAATTCTGTTCATCATAAATTGTGCATTTAGGGCAGTTCGAAGTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS TCA 90 bp | GTGGGGCTGTTGATGGAGGAACCATCTGGATCCATGTGCTGCCGCTaGAACTTCTGTGCTGCAGATTCCCTGCCCAGGGAAGGCTGGACC | + |
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Preference number: 5 (lower is better) Translates to: VGLLMEEPSGSMCCR*NFCAADSLPREGWT Trigger: GGTCCAGCCTTCCCTGGGCAGGGAATCTGCAGCACAGAAGTTTCAGCGGCAGCACATGGATCCAGATGGTTCCTCCATCAACAGCCCCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS GCA 90 bp | GGAGGAACCATCTGGATCCATGTGCTGCCGCTGAAACTTCTGTGCTaGAGATTCCCTGCCCAGGGAAGGCTGGACCCATCCAAGCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: GGTIWIHVLPLKLLC*RFPAQGRLDPSKQQ Trigger: CTGCTGCTTGGATGGGTCCAGCCTTCCCTGGGCAGGGAATCTGCAGCACAGAAGTTTCAGCGGCAGCACATGGATCCAGATGGTTCCTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS GCA 90 bp | CTGGATCCATGTGCTGCCGCTGAAACTTCTGTGCTGCAGATTCCCTaGCCAGGGAAGGCTGGACCCATCCAAGCAGCAGGACAAACAATG | + |
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Preference number: 5 (lower is better) Translates to: LDPCAAAETSVLQIP*PGKAGPIQAAGQTM Trigger: CATTGTTTGTCCTGCTGCTTGGATGGGTCCAGCCTTCCCTGGGCAGGGAATCTGCAGCACAGAAGTTTCAGCGGCAGCACATGGATCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS CCA 90 bp | CTCTTCCTGTTCTTGCAGGTGACATTTTCCTGGGAGCAGACAGCCTaGACATCTGCCAAGGGCTCATGCACGAAGGTGTTCACGGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: LFLFLQVTFSWEQTA*TSAKGSCTKVFTGL Trigger: CAAGCCCGTGAACACCTTCGTGCATGAGCCCTTGGCAGATGTCCAGGCTGTCTGCTCCCAGGAAAATGTCACCTGCAAGAACAGGAAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS TCA 90 bp | AGTCACAGTTGGGATACTTGGAGTTGCCCTTCAGGTGGCAGTCAGTaGTGTGCAGGGCAGAGCTGCTCTTGTAGCAGTTGCTCTTCCTGT | + |
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Preference number: 5 (lower is better) Translates to: SHSWDTWSCPSGGSQ*CAGQSCSCSSCSSC Trigger: ACAGGAAGAGCAACTGCTACAAGAGCAGCTCTGCCCTGCACATCACTGACTGCCACCTGAAGGGCAACTCCAAGTATCCCAACTGTGACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS GCA 90 bp | CCTGGACATCTGCCAAGGGCTCATGCACGAAGGTGTTCACGGGCTTaGATGACCCATTTGTCATATCCCGGCGTTTCATCATTTGGTTGC | + |
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Preference number: 5 (lower is better) Translates to: PGHLPRAHARRCSRA*MTHLSYPGVSSFGC Trigger: GCAACCAAATGATGAAACGCCGGGATATGACAAATGGGTCATGCAAGCCCGTGAACACCTTCGTGCATGAGCCCTTGGCAGATGTCCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS CCA 90 bp | CATCATTTGGTTGCAGTAGGTGGGGCTGTTGATGGAGGAACCATCTaGATCCATGTGCTGCCGCTGAAACTTCTGTGCTGCAGATTCCCT | + |
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Preference number: 5 (lower is better) Translates to: HHLVAVGGAVDGGTI*IHVLPLKLLCCRFP Trigger: AGGGAATCTGCAGCACAGAAGTTTCAGCGGCAGCACATGGATCCAGATGGTTCCTCCATCAACAGCCCCACCTACTGCAACCAAATGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS TCA 90 bp | TCATATCCCGGCGTTTCATCATTTGGTTGCAGTAGGTGGGGCTGTTaGTGGAGGAACCATCTGGATCCATGTGCTGCCGCTGAAACTTCT | + |
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Preference number: 5 (lower is better) Translates to: SYPGVSSFGCSRWGC*WRNHLDPCAAAETS Trigger: AGAAGTTTCAGCGGCAGCACATGGATCCAGATGGTTCCTCCATCAACAGCCCCACCTACTGCAACCAAATGATGAAACGCCGGGATATGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS TCA 90 bp | GACATCTGCCAAGGGCTCATGCACGAAGGTGTTCACGGGCTTGCATaGCCCATTTGTCATATCCCGGCGTTTCATCATTTGGTTGCAGTA | + |
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Preference number: 5 (lower is better) Translates to: DICQGLMHEGVHGLA*PICHIPAFHHLVAV Trigger: TACTGCAACCAAATGATGAAACGCCGGGATATGACAAATGGGTCATGCAAGCCCGTGAACACCTTCGTGCATGAGCCCTTGGCAGATGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS-3UTR CAA 90 bp | TTGTCTACAGCAAGAGAGGGATCTGGGAGCATGACACAGGACAGGAACGCATGTTTGCTCTTCCTGTTCTaGCAGGTGACATTTTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: LSTAREGSGSMTQDRNACLLFLF*QVTFSW Trigger: CCAGGAAAATGTCACCTGCAAGAACAGGAAGAGCAA...ACATGCGTTCCTGTCCTGTGTCATGCTCCCAGATCCCTCTCTTGCTGTAGACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS TCA 90 bp | CATCAAAGTGGACTGGTACGTAGGGGTTCCCTTCACAGGCCACAATaGTGTGCTTCTGGTATTGAGTGGTCTTGTAGTCACAGTTGGGAT | + |
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Preference number: 5 (lower is better) Translates to: HQSGLVRRGSLHRPQ*CASGIEWSCSHSWD Trigger: ATCCCAACTGTGACTACAAGACCACTCAATACCAGAAGCACATCATTGTGGCCTGTGAAGGGAACCCCTACGTACCAGTCCACTTTGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS-3UTR CAA 90 bp | AGTCTAAGGTTGAAGGGACATGTTCTGGTGAGGGCCATCTTGCTTCATTTGTCTGATGTGCTTCTGGTATaGAGTGGTCTTGTAGTCACA | + |
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Preference number: 5 (lower is better) Translates to: SLRLKGHVLVRAILLHLSDVLLV*SGLVVT Trigger: TGTGACTACAAGACCACTCAATACCAGAAGCACATC...AGACAAATGAAGCAAGATGGCCCTCACCAGAACATGTCCCTTCAACCTTAGACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS GCA 72 bp | GGTGACATTTTCCTGGGAGCAGACAGCCTGGACATCTaGCAAGGGCTCATGCACGAAGGTGTTCACGGGCTT | + |
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Preference number: 6 (lower is better) Translates to: GDIFLGADSLDI*QGLMHEGVHGL Trigger: AAGCCCGTGAACACCTTCGTGCATGAGCCCTTGGCAGATGTCCAGGCTGTCTGCTCCCAGGAAAATGTCACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS TCA 72 bp | TGGGATACTTGGAGTTGCCCTTCAGGTGGCAGTCAGTaGTGTGCAGGGCAGAGCTGCTCTTGTAGCAGTTGC | + |
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Preference number: 6 (lower is better) Translates to: WDTWSCPSGGSQ*CAGQSCSCSSC Trigger: GCAACTGCTACAAGAGCAGCTCTGCCCTGCACATCACTGACTGCCACCTGAAGGGCAACTCCAAGTATCCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS CCA 72 bp | GTTGCAGTAGGTGGGGCTGTTGATGGAGGAACCATCTaGATCCATGTGCTGCCGCTGAAACTTCTGTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: VAVGGAVDGGTI*IHVLPLKLLCC Trigger: GCAGCACAGAAGTTTCAGCGGCAGCACATGGATCCAGATGGTTCCTCCATCAACAGCCCCACCTACTGCAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS CAA 90 bp | CCAAGGGCTCATGCACGAAGGTGTTCACGGGCTTGCATGACCCATTaGTCATATCCCGGCGTTTCATCATTTGGTTGCAGTAGGTGGGGC | + |
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Preference number: 6 (lower is better) Translates to: PRAHARRCSRACMTH*SYPGVSSFGCSRWG Trigger: GCCCCACCTACTGCAACCAAATGATGAAACGCCGGGATATGACAAATGGGTCATGCAAGCCCGTGAACACCTTCGTGCATGAGCCCTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS TCA 72 bp | GGCGTTTCATCATTTGGTTGCAGTAGGTGGGGCTGTTaGTGGAGGAACCATCTGGATCCATGTGCTGCCGCT | + |
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Preference number: 6 (lower is better) Translates to: GVSSFGCSRWGC*WRNHLDPCAAA Trigger: AGCGGCAGCACATGGATCCAGATGGTTCCTCCATCAACAGCCCCACCTACTGCAACCAAATGATGAAACGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS GCA 72 bp | CTGCCAAGGGCTCATGCACGAAGGTGTTCACGGGCTTaGATGACCCATTTGTCATATCCCGGCGTTTCATCA | + |
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Preference number: 6 (lower is better) Translates to: LPRAHARRCSRA*MTHLSYPGVSS Trigger: TGATGAAACGCCGGGATATGACAAATGGGTCATGCAAGCCCGTGAACACCTTCGTGCATGAGCCCTTGGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS CAA 72 bp | TCTGCCAAGGGCTCATGCACGAAGGTGTTCACGGGCTaGCATGACCCATTTGTCATATCCCGGCGTTTCATC | + |
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Preference number: 6 (lower is better) Translates to: SAKGSCTKVFTG*HDPFVISRRFI Trigger: GATGAAACGCCGGGATATGACAAATGGGTCATGCAAGCCCGTGAACACCTTCGTGCATGAGCCCTTGGCAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS CAA 90 bp | GCCTGGACATCTGCCAAGGGCTCATGCACGAAGGTGTTCACGGGCTaGCATGACCCATTTGTCATATCCCGGCGTTTCATCATTTGGTTG | + |
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Preference number: 6 (lower is better) Translates to: AWTSAKGSCTKVFTG*HDPFVISRRFIIWL Trigger: CAACCAAATGATGAAACGCCGGGATATGACAAATGGGTCATGCAAGCCCGTGAACACCTTCGTGCATGAGCCCTTGGCAGATGTCCAGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS TCA 72 bp | CAAGGGCTCATGCACGAAGGTGTTCACGGGCTTGCATaGCCCATTTGTCATATCCCGGCGTTTCATCATTTG | + |
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Preference number: 6 (lower is better) Translates to: QGLMHEGVHGLA*PICHIPAFHHL Trigger: CAAATGATGAAACGCCGGGATATGACAAATGGGTCATGCAAGCCCGTGAACACCTTCGTGCATGAGCCCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS TCA 72 bp | TGCTCTTGTAGCAGTTGCTCTTCCTGTTCTTGCAGGTaGCATTTTCCTGGGAGCAGACAGCCTGGACATCTG | + |
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Preference number: 6 (lower is better) Translates to: CSCSSCSSCSCR*HFPGSRQPGHL Trigger: CAGATGTCCAGGCTGTCTGCTCCCAGGAAAATGTCACCTGCAAGAACAGGAAGAGCAACTGCTACAAGAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS TCA 72 bp | GGACTGGTACGTAGGGGTTCCCTTCACAGGCCACAATaGTGTGCTTCTGGTATTGAGTGGTCTTGTAGTCAC | + |
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Preference number: 6 (lower is better) Translates to: GLVRRGSLHRPQ*CASGIEWSCSH Trigger: GTGACTACAAGACCACTCAATACCAGAAGCACATCATTGTGGCCTGTGAAGGGAACCCCTACGTACCAGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS CAA 72 bp | CATGCACGAAGGTGTTCACGGGCTTGCATGACCCATTaGTCATATCCCGGCGTTTCATCATTTGGTTGCAGT | + |
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Preference number: 6 (lower is better) Translates to: HARRCSRACMTH*SYPGVSSFGCS Trigger: ACTGCAACCAAATGATGAAACGCCGGGATATGACAAATGGGTCATGCAAGCCCGTGAACACCTTCGTGCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS CAA 90 bp | TACGTAGGGGTTCCCTTCACAGGCCACAATGATGTGCTTCTGGTATaGAGTGGTCTTGTAGTCACAGTTGGGATACTTGGAGTTGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: YVGVPFTGHNDVLLV*SGLVVTVGILGVAL Trigger: AAGGGCAACTCCAAGTATCCCAACTGTGACTACAAGACCACTCAATACCAGAAGCACATCATTGTGGCCTGTGAAGGGAACCCCTACGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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| CDS CAA 72 bp | GTTCCCTTCACAGGCCACAATGATGTGCTTCTGGTATaGAGTGGTCTTGTAGTCACAGTTGGGATACTTGGA | + |
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Preference number: 6 (lower is better) Translates to: VPFTGHNDVLLV*SGLVVTVGILG Trigger: TCCAAGTATCCCAACTGTGACTACAAGACCACTCAATACCAGAAGCACATCATTGTGGCCTGTGAAGGGAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080126.4 |
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