Pregenerated sensors for RMND1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019763Ensembl transcript IDs: ENSMUST00000042251.11, ENSMUST00000126102.8, ENSMUST00000128434.2, ENSMUST00000155172.8
Found 112 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTCAAACTGGGCAGTCTGCCTCTGCTTTTCCAGTGCAGAGATGAGTaGGTTTCCCTGTGTAGCCAGGGCTGCTCTGGACATCAGGATCTG | + |
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Preference number: 1 (lower is better) Translates to: LKLGSLPLLFQCRDE*VSLCSQGCSGHQDL Trigger: CAGATCCTGATGTCCAGAGCAGCCCTGGCTACACAGGGAAACGCACTCATCTCTGCACTGGAAAAGCAGAGGCAGACTGCCCAGTTTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR GCA 90 bp | GTTATTGTTGGCCTCAAACTGGGCAGTCTGCCTCTGCTTTTCCAGTaGAGAGATGAGTGCGTTTCCCTGTGTAGCCAGGGCTGCTCTGGA | + |
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Preference number: 1 (lower is better) Translates to: VIVGLKLGSLPLLFQ*RDECVSLCSQGCSG Trigger: TCCAGAGCAGCCCTGGCTACACAGGGAAACGCACTCATCTCTGCACTGGAAAAGCAGAGGCAGACTGCCCAGTTTGAGGCCAACAATAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR GCA 90 bp | GCTACTACTCCTTGGGAAACTTGGGTTCCCTTGGGTTATAGGGATTaGAGTGGGGTCCCCAGCATCTCTGCAGAGAGCTGGAAAGAAAGG | + |
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Preference number: 1 (lower is better) Translates to: ATTPWETWVPLGYRD*SGVPSISAESWKER Trigger: CCTTTCTTTCCAGCTCTCTGCAGAGATGCTGGGGACCCCACTGCAATCCCTATAACCCAAGGGAACCCAAGTTTCCCAAGGAGTAGTAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR GCA 90 bp | AGTTCTGCTGTGTTATTGTTGGCCTCAAACTGGGCAGTCTGCCTCTaGTTTTCCAGTGCAGAGATGAGTGCGTTTCCCTGTGTAGCCAGG | + |
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Preference number: 1 (lower is better) Translates to: SSAVLLLASNWAVCL*FSSAEMSAFPCVAR Trigger: CCTGGCTACACAGGGAAACGCACTCATCTCTGCACTGGAAAAGCAGAGGCAGACTGCCCAGTTTGAGGCCAACAATAACACAGCAGAACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR TCA 90 bp | AAAGGCTATACTCACCAATTTAATTGTCCTTTTACTCAGCTTGTTTaGAGCCTTAAAGGCTGTTTAAATGCAGCCGACCTATGTAGGGTA | + |
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Preference number: 1 (lower is better) Translates to: KGYTHQFNCPFTQLV*SLKGCLNAADLCRV Trigger: TACCCTACATAGGTCGGCTGCATTTAAACAGCCTTTAAGGCTTCAAACAAGCTGAGTAAAAGGACAATTAAATTGGTGAGTATAGCCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR GCA 90 bp | CCCAGCATCTCTGCAGAGAGCTGGAAAGAAAGGCCACACACTCGCCTTGGCAGTCTGTGTAGCCAGGGCTaGTCTGGACATCAGGATCTG | + |
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Preference number: 2 (lower is better) Translates to: PSISAESWKERPHTRLGSLCSQG*SGHQDL Trigger: CAGATCCTGATGTCCAGAGCAGCCCTGGCTACACAG...ACTGCCAAGGCGAGTGTGTGGCCTTTCTTTCCAGCTCTCTGCAGAGATGCTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR CCA 90 bp | CCCAGCATCTCTGCAGAGAGCTGGAAAGAAAGGCCACACACTCGCCTTGGCAGTTTGTTGGCCTCAAACTaGGCAGTCTGCCTCTGCTTT | + |
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Preference number: 2 (lower is better) Translates to: PSISAESWKERPHTRLGSLLASN*AVCLCF Trigger: AAAGCAGAGGCAGACTGCCCAGTTTGAGGCCAACAA...ACTGCCAAGGCGAGTGTGTGGCCTTTCTTTCCAGCTCTCTGCAGAGATGCTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR TCA 90 bp | CCCAGCATCTCTGCAGAGAGCTGGAAAGAAAGGCCACACACTCGCCTTGGCAGTTCAGCAAGATGTCACTaGATGTGTATTCTCTGGTGT | + |
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Preference number: 2 (lower is better) Translates to: PSISAESWKERPHTRLGSSARCH*MCILWC Trigger: ACACCAGAGAATACACATTCAGTGACATCTTGCTGA...ACTGCCAAGGCGAGTGTGTGGCCTTTCTTTCCAGCTCTCTGCAGAGATGCTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR CCA 90 bp | CTTGGTCCACAAACCCCTGGTGATTCTTCACTGTGTCAGGCTGACATAAGTAACCTGCGGTTAGTGATGTaGCCCTGCCTTCTCACAAGA | + |
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Preference number: 2 (lower is better) Translates to: LGPQTPGDSSLCQADISNLRLVM*PCLLTR Trigger: TCTTGTGAGAAGGCAGGGCCACATCACTAACCGCAG...GTTACTTATGTCAGCCTGACACAGTGAAGAATCACCAGGGGTTTGTGGACCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128434.2 |
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| 3UTR-3UTR GCA 90 bp | TGTTTAAATGCAGCCGACCTATGTAGGGTAGCTGAGAGATGCTGCTGTTTTTACTTGGGTTATAGGGATTaGAGTGGGGTCCCCAGCATC | + |
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Preference number: 2 (lower is better) Translates to: CLNAADLCRVAERCCCFYLGYRD*SGVPSI Trigger: GATGCTGGGGACCCCACTGCAATCCCTATAACCCAA...GTAAAAACAGCAGCATCTCTCAGCTACCCTACATAGGTCGGCTGCATTTAAACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR GCA 90 bp | TGTTTAAATGCAGCCGACCTATGTAGGGTAGCTGAGAGATGCTGCTGTTTTTACCCTCTGCTTTTCCAGTaGAGAGATGAGTGCGTTTCC | + |
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Preference number: 2 (lower is better) Translates to: CLNAADLCRVAERCCCFYPLLFQ*RDECVS Trigger: GGAAACGCACTCATCTCTGCACTGGAAAAGCAGAGG...GTAAAAACAGCAGCATCTCTCAGCTACCCTACATAGGTCGGCTGCATTTAAACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR TCA 90 bp | TGTTTAAATGCAGCCGACCTATGTAGGGTAGCTGAGAGATGCTGCTGTTTTTACTGCTGGTTCAGAACTTaGCTTCTCTCTTGCCAGTGT | + |
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Preference number: 2 (lower is better) Translates to: CLNAADLCRVAERCCCFYCWFRT*LLSCQC Trigger: ACACTGGCAAGAGAGAAGTCAAGTTCTGAACCAGCA...GTAAAAACAGCAGCATCTCTCAGCTACCCTACATAGGTCGGCTGCATTTAAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR GCA 90 bp | ATTGTAGTGTATGCAAAGCAGTACTGGATGAATGTACACACACACACACACACATGGGCAGTCTGCCTCTaGTTTTCCAGTGCAGAGATG | + |
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Preference number: 2 (lower is better) Translates to: IVVYAKQYWMNVHTHTHTWAVCL*FSSAEM Trigger: CATCTCTGCACTGGAAAAGCAGAGGCAGACTGCCCA...TGTGTGTGTGTGTGTGTGTACATTCATCCAGTACTGCTTTGCATACACTACAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR CCA 90 bp | GCAACATTTAAAAATGTTAACTTTTGCTGGGCAGTGGTGGTGCACACCTTTAATCACACACATGAACAGTaGGATCTTGGCAGAGTGGGG | + |
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Preference number: 2 (lower is better) Translates to: ATFKNVNFCWAVVVHTFNHTHEQ*DLGRVG Trigger: CCCCACTCTGCCAAGATCCCACTGTTCATGTGTGTG...ATTAAAGGTGTGCACCACCACTGCCCAGCAAAAGTTAACATTTTTAAATGTTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR CCA 90 bp | ATTGTAGTGTATGCAAAGCAGTACTGGATGAATGTACACACACACACACACACAACCAGTAGTGAACGCTaGCTTTGCTGGTTCAGAACT | + |
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Preference number: 2 (lower is better) Translates to: IVVYAKQYWMNVHTHTHTTSSER*LCWFRT Trigger: AGTTCTGAACCAGCAAAGCCAGCGTTCACTACTGGT...TGTGTGTGTGTGTGTGTGTACATTCATCCAGTACTGCTTTGCATACACTACAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR TCA 90 bp | TGTTTAAATGCAGCCGACCTATGTAGGGTAGCTGAGAGATGCTGCTGTTTTTACTATGTGTTTGTGATATaGGTGATCCATGAGACATGC | + |
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Preference number: 2 (lower is better) Translates to: CLNAADLCRVAERCCCFYYVFVI*VIHETC Trigger: GCATGTCTCATGGATCACTCATATCACAAACACATA...GTAAAAACAGCAGCATCTCTCAGCTACCCTACATAGGTCGGCTGCATTTAAACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR CCA 90 bp | GCAACATTTAAAAATGTTAACTTTTGCTGGGCAGTGGTGGTGCACACCTTTAATACTCCTTGGGAAACTTaGGTTCCCTTGGGTTATAGG | + |
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Preference number: 2 (lower is better) Translates to: ATFKNVNFCWAVVVHTFNTPWET*VPLGYR Trigger: CCTATAACCCAAGGGAACCCAAGTTTCCCAAGGAGT...ATTAAAGGTGTGCACCACCACTGCCCAGCAAAAGTTAACATTTTTAAATGTTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR GCA 90 bp | TGTCATTTGTGTTTTATTTTGAGACAGTTCTGCTGTGTTATTGTTGGCCTCAAAACATCAGGATCTGCCTaGTTCAGCTTCCTGAGGTTC | + |
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Preference number: 2 (lower is better) Translates to: CHLCFILRQFCCVIVGLKTSGSA*FSFLRF Trigger: GAACCTCAGGAAGCTGAAGCAGGCAGATCCTGATGT...TTTGAGGCCAACAATAACACAGCAGAACTGTCTCAAAATAAAACACAAATGACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR GCA 90 bp | TGTTTAAATGCAGCCGACCTATGTAGGGTAGCTGAGAGATGCTGCTGTTTTTACAAGGCACAAAATGAATaGTCCATTGTAGTGTATGCA | + |
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Preference number: 2 (lower is better) Translates to: CLNAADLCRVAERCCCFYKAQNE*SIVVYA Trigger: TGCATACACTACAATGGAGCATTCATTTTGTGCCTT...GTAAAAACAGCAGCATCTCTCAGCTACCCTACATAGGTCGGCTGCATTTAAACA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR CCA 90 bp | GCAACATTTAAAAATGTTAACTTTTGCTGGGCAGTGGTGGTGCACACCTTTAATAGTTGTCAGACCTTCTaGCACCATAGTTTTTCTGCC | + |
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Preference number: 2 (lower is better) Translates to: ATFKNVNFCWAVVVHTFNSCQTF*HHSFSA Trigger: GGCAGAAAAACTATGGTGCCAGAAGGTCTGACAACT...ATTAAAGGTGTGCACCACCACTGCCCAGCAAAAGTTAACATTTTTAAATGTTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR GCA 90 bp | ATTGTAGTGTATGCAAAGCAGTACTGGATGAATGTACACACACACACACACACAATTTTGAGACAGTTCTaGTGTGTTATTGTTGGCCTC | + |
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Preference number: 2 (lower is better) Translates to: IVVYAKQYWMNVHTHTHTILRQF*CVIVGL Trigger: GAGGCCAACAATAACACAGCAGAACTGTCTCAAAAT...TGTGTGTGTGTGTGTGTGTACATTCATCCAGTACTGCTTTGCATACACTACAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR CCA 90 bp | GCAACATTTAAAAATGTTAACTTTTGCTGGGCAGTGGTGGTGCACACCTTTAATTATGCAAAGCAGTACTaGATGAATGTACACACACAC | + |
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Preference number: 2 (lower is better) Translates to: ATFKNVNFCWAVVVHTFNYAKQY*MNVHTH Trigger: GTGTGTGTGTACATTCATCCAGTACTGCTTTGCATA...ATTAAAGGTGTGCACCACCACTGCCCAGCAAAAGTTAACATTTTTAAATGTTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR CCA 90 bp | GCAACATTTAAAAATGTTAACTTTTGCTGGGCAGTGGTGGTGCACACCTTTAATGCACCTGTCATTTACTaGAATCTGAAGTCAACGTTT | + |
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Preference number: 2 (lower is better) Translates to: ATFKNVNFCWAVVVHTFNAPVIY*NLKSTF Trigger: AAACGTTGACTTCAGATTCCAGTAAATGACAGGTGC...ATTAAAGGTGTGCACCACCACTGCCCAGCAAAAGTTAACATTTTTAAATGTTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR GCA 72 bp | CCCTGTGTAGCCAGGGCTGCTCTGGACATCAGGATCTaGCTGCTTCAGCTTCCTGAGGTTCTAGGTGTGTCC | + |
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Preference number: 3 (lower is better) Translates to: PCVARAALDIRI*LLQLPEVLGVS Trigger: GGACACACCTAGAACCTCAGGAAGCTGAAGCAGGCAGATCCTGATGTCCAGAGCAGCCCTGGCTACACAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR GCA 72 bp | GGCCTCAAACTGGGCAGTCTGCCTCTGCTTTTCCAGTaGAGAGATGAGTGCGTTTCCCTGTGTAGCCAGGGC | + |
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Preference number: 3 (lower is better) Translates to: GLKLGSLPLLFQ*RDECVSLCSQG Trigger: GCCCTGGCTACACAGGGAAACGCACTCATCTCTGCACTGGAAAAGCAGAGGCAGACTGCCCAGTTTGAGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR GCA 72 bp | CCTTGGGAAACTTGGGTTCCCTTGGGTTATAGGGATTaGAGTGGGGTCCCCAGCATCTCTGCAGAGAGCTGG | + |
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Preference number: 3 (lower is better) Translates to: PWETWVPLGYRD*SGVPSISAESW Trigger: CCAGCTCTCTGCAGAGATGCTGGGGACCCCACTGCAATCCCTATAACCCAAGGGAACCCAAGTTTCCCAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR CCA 72 bp | CTGCTGCTACTACTCCTTGGGAAACTTGGGTTCCCTTaGGTTATAGGGATTGCAGTGGGGTCCCCAGCATCT | + |
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Preference number: 3 (lower is better) Translates to: LLLLLLGKLGFP*VIGIAVGSPAS Trigger: AGATGCTGGGGACCCCACTGCAATCCCTATAACCCAAGGGAACCCAAGTTTCCCAAGGAGTAGTAGCAGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR GCA 72 bp | TACACTCACAGCAGGCTTGTGACAGCTGGCTCATGCTaGTGCTACTACTCCTTGGGAAACTTGGGTTCCCTT | + |
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Preference number: 3 (lower is better) Translates to: YTHSRLVTAGSC*CYYSLGNLGSL Trigger: AAGGGAACCCAAGTTTCCCAAGGAGTAGTAGCAGCAGCATGAGCCAGCTGTCACAAGCCTGCTGTGAGTGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR TCA 72 bp | AGAGATGCTGCTGTTTTTACACTCACAGCAGGCTTGTaGCAGCTGGCTCATGCTGCTGCTACTACTCCTTGG | + |
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Preference number: 3 (lower is better) Translates to: RDAAVFTLTAGL*QLAHAAATTPW Trigger: CCAAGGAGTAGTAGCAGCAGCATGAGCCAGCTGTCACAAGCCTGCTGTGAGTGTAAAAACAGCAGCATCTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR GCA 72 bp | GTGTTATTGTTGGCCTCAAACTGGGCAGTCTGCCTCTaGTTTTCCAGTGCAGAGATGAGTGCGTTTCCCTGT | + |
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Preference number: 3 (lower is better) Translates to: VLLLASNWAVCL*FSSAEMSAFPC Trigger: ACAGGGAAACGCACTCATCTCTGCACTGGAAAAGCAGAGGCAGACTGCCCAGTTTGAGGCCAACAATAACAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR GCA 72 bp | TTTTACACTCACAGCAGGCTTGTGACAGCTGGCTCATaGTGCTGCTACTACTCCTTGGGAAACTTGGGTTCC | + |
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Preference number: 3 (lower is better) Translates to: FYTHSRLVTAGS*CCYYSLGNLGS Trigger: GGAACCCAAGTTTCCCAAGGAGTAGTAGCAGCAGCATGAGCCAGCTGTCACAAGCCTGCTGTGAGTGTAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR TCA 72 bp | ACCAGTAGTGAACGCTGGCTTTGCTGGTTCAGAACTTaGCTTCTCTCTTGCCAGTGTGGTGCTTTCATGATC | + |
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Preference number: 3 (lower is better) Translates to: TSSERWLCWFRT*LLSCQCGAFMI Trigger: GATCATGAAAGCACCACACTGGCAAGAGAGAAGTCAAGTTCTGAACCAGCAAAGCCAGCGTTCACTACTGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR CAA 90 bp | TGTTTAAATGCAGCCGACCTATGTAGGGTAGCTGAGAGATGCTGCTGTTTTTACGAAACTTGGGTTCCCTaGGGTTATAGGGATTGCAGT | + |
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Preference number: 3 (lower is better) Translates to: CLNAADLCRVAERCCCFYETWVP*GYRDCS Trigger: ACTGCAATCCCTATAACCCAAGGGAACCCAAGTTTC...GTAAAAACAGCAGCATCTCTCAGCTACCCTACATAGGTCGGCTGCATTTAAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR CAA 90 bp | ATTGTAGTGTATGCAAAGCAGTACTGGATGAATGTACACACACACACACACACATCTGCTGTGTTATTGTaGGCCTCAAACTGGGCAGTC | + |
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Preference number: 3 (lower is better) Translates to: IVVYAKQYWMNVHTHTHTSAVLL*ASNWAV Trigger: GACTGCCCAGTTTGAGGCCAACAATAACACAGCAGA...TGTGTGTGTGTGTGTGTGTACATTCATCCAGTACTGCTTTGCATACACTACAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR-3UTR CAA 90 bp | TGTTTAAATGCAGCCGACCTATGTAGGGTAGCTGAGAGATGCTGCTGTTTTTACGTAGGGAGACCGACTTaGTCAATGTATTACTGCCAA | + |
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Preference number: 3 (lower is better) Translates to: CLNAADLCRVAERCCCFYVGRPT*SMYYCQ Trigger: TTGGCAGTAATACATTGACAAAGTCGGTCTCCCTAC...GTAAAAACAGCAGCATCTCTCAGCTACCCTACATAGGTCGGCTGCATTTAAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR TCA 72 bp | AACACAAGTGTTTGTATGGCTTGTAAGCTAGGGCCATaGTTCCAGAGTTTTAAGAATGGTATCGAGTGGCGC | + |
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Preference number: 3 (lower is better) Translates to: NTSVCMACKLGP*FQSFKNGIEWR Trigger: GCGCCACTCGATACCATTCTTAAAACTCTGGAATCATGGCCCTAGCTTACAAGCCATACAAACACTTGTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR TCA 72 bp | ACTCACCAATTTAATTGTCCTTTTACTCAGCTTGTTTaGAGCCTTAAAGGCTGTTTAAATGCAGCCGACCTA | + |
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Preference number: 3 (lower is better) Translates to: THQFNCPFTQLV*SLKGCLNAADL Trigger: TAGGTCGGCTGCATTTAAACAGCCTTTAAGGCTTCAAACAAGCTGAGTAAAAGGACAATTAAATTGGTGAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR TCA 72 bp | TCCTTAATTGTATGTGTTTGTGATATGAGTGATCCATaGGACATGCACATAATACAGTATGTTTGTAGGGAG | + |
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Preference number: 3 (lower is better) Translates to: SLIVCVCDMSDP*DMHIIQYVCRE Trigger: CTCCCTACAAACATACTGTATTATGTGCATGTCTCATGGATCACTCATATCACAAACACATACAATTAAGGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS-3UTR GCA 90 bp | TTCCAGTGCAGAGATGAGTGCGTTTCCCTGTGTAGCCAGGGCTGCTCTGGACATCCACTCCAAGCGGAGTaGTCGCTTCTCATTGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: FQCRDECVSLCSQGCSGHPLQAE*SLLIEV Trigger: CACCTCAATGAGAAGCGAGCACTCCGCTTGGAGTGG...ATGTCCAGAGCAGCCCTGGCTACACAGGGAAACGCACTCATCTCTGCACTGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS-3UTR TCA 90 bp | TTCCAGTGCAGAGATGAGTGCGTTTCCCTGTGTAGCCAGGGCTGCTCTGGACATGACAGACTTCCCAGGTaGTACTCATCTGCGGTTGCA | + |
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Preference number: 4 (lower is better) Translates to: FQCRDECVSLCSQGCSGHDRLPR*YSSAVA Trigger: TGCAACCGCAGATGAGTATCACCTGGGAAGTCTGTC...ATGTCCAGAGCAGCCCTGGCTACACAGGGAAACGCACTCATCTCTGCACTGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS-3UTR TCA 90 bp | CCCAGCATCTCTGCAGAGAGCTGGAAAGAAAGGCCACACACTCGCCTTGGCAGTGTGCTCGCTTCTCATTaGGGTGATTCCGCATTAGGT | + |
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Preference number: 4 (lower is better) Translates to: PSISAESWKERPHTRLGSVLASH*GDSALG Trigger: ACCTAATGCGGAATCACCTCAATGAGAAGCGAGCAC...ACTGCCAAGGCGAGTGTGTGGCCTTTCTTTCCAGCTCTCTGCAGAGATGCTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| 3UTR CAA 72 bp | CTGCAGAGAGCTGGAAAGAAAGGCCACACACTCGCCTaGGCAGTACTAGCAAGCACAGCATCAGCAAGATGT | + |
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Preference number: 4 (lower is better) Translates to: LQRAGKKGHTLA*AVLASTASARC Trigger: ACATCTTGCTGATGCTGTGCTTGCTAGTACTGCCAAGGCGAGTGTGTGGCCTTTCTTTCCAGCTCTCTGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS-3UTR GCA 90 bp | CCCAGCATCTCTGCAGAGAGCTGGAAAGAAAGGCCACACACTCGCCTTGGCAGTGGGATCACCTTCTTTTaGAGAACTTTCCACACCCAT | + |
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Preference number: 4 (lower is better) Translates to: PSISAESWKERPHTRLGSGITFF*RTFHTH Trigger: ATGGGTGTGGAAAGTTCTGCAAAAGAAGGTGATCCC...ACTGCCAAGGCGAGTGTGTGGCCTTTCTTTCCAGCTCTCTGCAGAGATGCTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS-3UTR TCA 90 bp | TTCCAGTGCAGAGATGAGTGCGTTTCCCTGTGTAGCCAGGGCTGCTCTGGACATCCCTCTGTGCAGTTTTaGTTGTCCCTCTGTCTTTAT | + |
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Preference number: 4 (lower is better) Translates to: FQCRDECVSLCSQGCSGHPSVQF*LSLCLY Trigger: ATAAAGACAGAGGGACAATCAAAACTGCACAGAGGG...ATGTCCAGAGCAGCCCTGGCTACACAGGGAAACGCACTCATCTCTGCACTGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS-3UTR GCA 90 bp | CTTGGTCCACAAACCCCTGGTGATTCTTCACTGTGTCAGGCTGACATAAGTAACCCACTCCAAGCGGAGTaGTCGCTTCTCATTGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: LGPQTPGDSSLCQADISNPLQAE*SLLIEV Trigger: CACCTCAATGAGAAGCGAGCACTCCGCTTGGAGTGG...GTTACTTATGTCAGCCTGACACAGTGAAGAATCACCAGGGGTTTGTGGACCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128434.2 |
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| CDS-3UTR TCA 90 bp | GTAGTGAACGCTGGCTTTGCTGGTTCAGAACTTGACTTCTCTCTTGCCAGTGTGCAGCAGCTCCTTCCCTaGACAAGAATATTGTTCCGG | + |
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Preference number: 4 (lower is better) Translates to: VVNAGFAGSELDFSLASVQQLLP*TRILFR Trigger: CCGGAACAATATTCTTGTTCAGGGAAGGAGCTGCTG...CACACTGGCAAGAGAGAAGTCAAGTTCTGAACCAGCAAAGCCAGCGTTCACTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS-3UTR GCA 90 bp | TTCCAGTGCAGAGATGAGTGCGTTTCCCTGTGTAGCCAGGGCTGCTCTGGACATCACCAAAATATTTGCTaGATCTCTAGGCAGGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: FQCRDECVSLCSQGCSGHHQNIC*ISRQAC Trigger: ACAAGCCTGCCTAGAGATGCAGCAAATATTTTGGTG...ATGTCCAGAGCAGCCCTGGCTACACAGGGAAACGCACTCATCTCTGCACTGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS-3UTR GCA 90 bp | TTCCAGTGCAGAGATGAGTGCGTTTCCCTGTGTAGCCAGGGCTGCTCTGGACATAGTTCCATGCAGTGCTaGAGTTTTTCATTCATGACC | + |
|
Preference number: 4 (lower is better) Translates to: FQCRDECVSLCSQGCSGHSSMQC*SFSFMT Trigger: GGTCATGAATGAAAAACTGCAGCACTGCATGGAACT...ATGTCCAGAGCAGCCCTGGCTACACAGGGAAACGCACTCATCTCTGCACTGGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR TCA 90 bp | GGTGATTCTTCACTGTGTCAGGCTGACATAAGTAACAGCATAGCAGTGAAGGCCGTGCTCGCTTCTCATTaGGGTGATTCCGCATTAGGT | + |
|
Preference number: 4 (lower is better) Translates to: GDSSLCQADISNSIAVKAVLASH*GDSALG Trigger: ACCTAATGCGGAATCACCTCAATGAGAAGCGAGCAC...GGCCTTCACTGCTATGCTGTTACTTATGTCAGCCTGACACAGTGAAGAATCACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128434.2 |
||
| CDS-3UTR GCA 90 bp | GTAGTGAACGCTGGCTTTGCTGGTTCAGAACTTGACTTCTCTCTTGCCAGTGTGGCAAATGCTGTGCACTaGATCAGGTCCTCATTCACA | + |
|
Preference number: 4 (lower is better) Translates to: VVNAGFAGSELDFSLASVANAVH*IRSSFT Trigger: TGTGAATGAGGACCTGATGCAGTGCACAGCATTTGC...CACACTGGCAAGAGAGAAGTCAAGTTCTGAACCAGCAAAGCCAGCGTTCACTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR GCA 90 bp | GTAGTGAACGCTGGCTTTGCTGGTTCAGAACTTGACTTCTCTCTTGCCAGTGTGAAGCTCTTCCAGGTTTaGTCTGTCCCAGTAGAAGTC | + |
|
Preference number: 4 (lower is better) Translates to: VVNAGFAGSELDFSLASVKLFQV*SVPVEV Trigger: GACTTCTACTGGGACAGAGCAAACCTGGAAGAGCTT...CACACTGGCAAGAGAGAAGTCAAGTTCTGAACCAGCAAAGCCAGCGTTCACTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR GCA 90 bp | AAGGGGCTTTCCTTGGTCCACAAACCCCTGGTGATTCTTCACTGTGTCAGGCTGAGTTCCATGCAGTGCTaGAGTTTTTCATTCATGACC | + |
|
Preference number: 4 (lower is better) Translates to: KGLSLVHKPLVILHCVRLSSMQC*SFSFMT Trigger: GGTCATGAATGAAAAACTGCAGCACTGCATGGAACT...CAGCCTGACACAGTGAAGAATCACCAGGGGTTTGTGGACCAAGGAAAGCCCCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000128434.2 |
||
| CDS-3UTR GCA 90 bp | TTCCAGTGCAGAGATGAGTGCGTTTCCCTGTGTAGCCAGGGCTGCTCTGGACATGTTAGTTCCATGCAGTaGTGCAGTTTTTCATTCATG | + |
|
Preference number: 4 (lower is better) Translates to: FQCRDECVSLCSQGCSGHVSSMQ*CSFSFM Trigger: CATGAATGAAAAACTGCAGCACTGCATGGAACTAAC...ATGTCCAGAGCAGCCCTGGCTACACAGGGAAACGCACTCATCTCTGCACTGGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR TCA 90 bp | GGTGATTCTTCACTGTGTCAGGCTGACATAAGTAACAGCATAGCAGTGAAGGCCCGCTTCTCATTGAGGTaGTTCCGCATTAGGTCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: GDSSLCQADISNSIAVKARFSLR*FRIRSV Trigger: AACAGACCTAATGCGGAATCACCTCAATGAGAAGCG...GGCCTTCACTGCTATGCTGTTACTTATGTCAGCCTGACACAGTGAAGAATCACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128434.2 |
||
| CDS-3UTR GCA 90 bp | CTTGGTCCACAAACCCCTGGTGATTCTTCACTGTGTCAGGCTGACATAAGTAACAAGCTCTTCCAGGTTTaGTCTGTCCCAGTAGAAGTC | + |
|
Preference number: 4 (lower is better) Translates to: LGPQTPGDSSLCQADISNKLFQV*SVPVEV Trigger: GACTTCTACTGGGACAGAGCAAACCTGGAAGAGCTT...GTTACTTATGTCAGCCTGACACAGTGAAGAATCACCAGGGGTTTGTGGACCAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128434.2 |
||
| CDS-3UTR GCA 90 bp | AAGGGGCTTTCCTTGGTCCACAAACCCCTGGTGATTCTTCACTGTGTCAGGCTGGTTAGTTCCATGCAGTaGTGCAGTTTTTCATTCATG | + |
|
Preference number: 4 (lower is better) Translates to: KGLSLVHKPLVILHCVRLVSSMQ*CSFSFM Trigger: CATGAATGAAAAACTGCAGCACTGCATGGAACTAAC...CAGCCTGACACAGTGAAGAATCACCAGGGGTTTGTGGACCAAGGAAAGCCCCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000128434.2 |
||
| CDS-3UTR GCA 90 bp | GTAGTGAACGCTGGCTTTGCTGGTTCAGAACTTGACTTCTCTCTTGCCAGTGTGGGTCTGTTAGTTCCATaGAGTGCTGCAGTTTTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: VVNAGFAGSELDFSLASVGLLVP*SAAVFH Trigger: ATGAAAAACTGCAGCACTGCATGGAACTAACAGACC...CACACTGGCAAGAGAGAAGTCAAGTTCTGAACCAGCAAAGCCAGCGTTCACTAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR CCA 90 bp | GTAGTGAACGCTGGCTTTGCTGGTTCAGAACTTGACTTCTCTCTTGCCAGTGTGCATTTCCAGGATCTCTaGCTTATTCAAACTGTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: VVNAGFAGSELDFSLASVHFQDL*LIQTVS Trigger: GCTGACAGTTTGAATAAGCCAGAGATCCTGGAAATG...CACACTGGCAAGAGAGAAGTCAAGTTCTGAACCAGCAAAGCCAGCGTTCACTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR TCA 90 bp | ATTGTAGTGTATGCAAAGCAGTACTGGATGAATGTACACACACACACACACACAAATAGCCAGCTTCACTaGCAGGCAGAGAGCGTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: IVVYAKQYWMNVHTHTHTNSQLH*QAESVG Trigger: TCCAACGCTCTCTGCCTGTCAGTGAAGCTGGCTATT...TGTGTGTGTGTGTGTGTGTACATTCATCCAGTACTGCTTTGCATACACTACAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR GCA 90 bp | TGTTTAAATGCAGCCGACCTATGTAGGGTAGCTGAGAGATGCTGCTGTTTTTACATACTCATCTGCGGTTaGAAATGCTGTGCACTGCAT | + |
|
Preference number: 4 (lower is better) Translates to: CLNAADLCRVAERCCCFYILICG*KCCALH Trigger: ATGCAGTGCACAGCATTTGCAACCGCAGATGAGTAT...GTAAAAACAGCAGCATCTCTCAGCTACCCTACATAGGTCGGCTGCATTTAAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR GCA 90 bp | ATTGTAGTGTATGCAAAGCAGTACTGGATGAATGTACACACACACACACACACACTCAGGTTTATTCGGTaGCTGAGGGCAAAGAGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: IVVYAKQYWMNVHTHTHTLRFIR*LRAKSS Trigger: TGAGCTCTTTGCCCTCAGGCACCGAATAAACCTGAG...TGTGTGTGTGTGTGTGTGTACATTCATCCAGTACTGCTTTGCATACACTACAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR TCA 90 bp | GCAACATTTAAAAATGTTAACTTTTGCTGGGCAGTGGTGGTGCACACCTTTAATCGCTTCTCATTGAGGTaGTTCCGCATTAGGTCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: ATFKNVNFCWAVVVHTFNRFSLR*FRIRSV Trigger: AACAGACCTAATGCGGAATCACCTCAATGAGAAGCG...ATTAAAGGTGTGCACCACCACTGCCCAGCAAAAGTTAACATTTTTAAATGTTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR GCA 90 bp | CAAACTAATGAAAAGGAGCCAATGCCGTCTTTAAAACTCGGGACCTCACTTACTGGTCTGTTAGTTCCATaGAGTGCTGCAGTTTTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: QTNEKEPMPSLKLGTSLTGLLVP*SAAVFH Trigger: ATGAAAAACTGCAGCACTGCATGGAACTAACAGACC...AGTAAGTGAGGTCCCGAGTTTTAAAGACGGCATTGGCTCCTTTTCATTAGTTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000128434.2 |
||
| CDS-3UTR GCA 90 bp | TGTCATTTGTGTTTTATTTTGAGACAGTTCTGCTGTGTTATTGTTGGCCTCAAACGGTTGCAAATGCTGTaGACTGCATCAGGTCCTCAT | + |
|
Preference number: 4 (lower is better) Translates to: CHLCFILRQFCCVIVGLKRLQML*TASGPH Trigger: ATGAGGACCTGATGCAGTGCACAGCATTTGCAACCG...TTTGAGGCCAACAATAACACAGCAGAACTGTCTCAAAATAAAACACAAATGACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR TCA 90 bp | GCAACATTTAAAAATGTTAACTTTTGCTGGGCAGTGGTGGTGCACACCTTTAATCTGTCTTTATGTAGTTaGGTTCTTCGTTCTCCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: ATFKNVNFCWAVVVHTFNLSLCS*VLRSPS Trigger: ACTGGGAGAACGAAGAACTCAACTACATAAAGACAG...ATTAAAGGTGTGCACCACCACTGCCCAGCAAAAGTTAACATTTTTAAATGTTGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR TCA 90 bp | TGTCATTTGTGTTTTATTTTGAGACAGTTCTGCTGTGTTATTGTTGGCCTCAAAGCTCAGAGTTTAGCTTaGTTTCCCCTCTGTGCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: CHLCFILRQFCCVIVGLKAQSLA*FPLCAV Trigger: AACTGCACAGAGGGGAAATCAAGCTAAACTCTGAGC...TTTGAGGCCAACAATAACACAGCAGAACTGTCTCAAAATAAAACACAAATGACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR GCA 90 bp | ATTGTAGTGTATGCAAAGCAGTACTGGATGAATGTACACACACACACACACACATGTCTCTCTAGAACTTaGATCACGTGCTTCATAGTT | + |
|
Preference number: 4 (lower is better) Translates to: IVVYAKQYWMNVHTHTHTCLSRT*ITCFIV Trigger: AACTATGAAGCACGTGATGCAAGTTCTAGAGAGACA...TGTGTGTGTGTGTGTGTGTACATTCATCCAGTACTGCTTTGCATACACTACAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR GCA 90 bp | GCAACATTTAAAAATGTTAACTTTTGCTGGGCAGTGGTGGTGCACACCTTTAATTTAACGGAAAGAGTCTaGTTGTGTCTGATGTTATCC | + |
|
Preference number: 4 (lower is better) Translates to: ATFKNVNFCWAVVVHTFNLTERV*LCLMLS Trigger: GGATAACATCAGACACAAGCAGACTCTTTCCGTTAA...ATTAAAGGTGTGCACCACCACTGCCCAGCAAAAGTTAACATTTTTAAATGTTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR GCA 90 bp | GCAACATTTAAAAATGTTAACTTTTGCTGGGCAGTGGTGGTGCACACCTTTAATAATGAGTGTAAATGTTaGTGTATTGTCAGGCCATTG | + |
|
Preference number: 4 (lower is better) Translates to: ATFKNVNFCWAVVVHTFNNECKC*CIVRPL Trigger: CAATGGCCTGACAATACAGCAACATTTACACTCATT...ATTAAAGGTGTGCACCACCACTGCCCAGCAAAAGTTAACATTTTTAAATGTTGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR GCA 90 bp | TGTCATTTGTGTTTTATTTTGAGACAGTTCTGCTGTGTTATTGTTGGCCTCAAACATCACCAAAATATTTaGTGCATCTCTAGGCAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: CHLCFILRQFCCVIVGLKHHQNI*CISRQA Trigger: AGCCTGCCTAGAGATGCAGCAAATATTTTGGTGATG...TTTGAGGCCAACAATAACACAGCAGAACTGTCTCAAAATAAAACACAAATGACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR CCA 90 bp | TGTCATTTGTGTTTTATTTTGAGACAGTTCTGCTGTGTTATTGTTGGCCTCAAACAAATTTCTCTAGAATaGCGTCATCCAAGTCCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: CHLCFILRQFCCVIVGLKQISLE*RHPSPA Trigger: AGCTGGACTTGGATGACGCCATTCTAGAGAAATTTG...TTTGAGGCCAACAATAACACAGCAGAACTGTCTCAAAATAAAACACAAATGACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR TCA 90 bp | TGTCATTTGTGTTTTATTTTGAGACAGTTCTGCTGTGTTATTGTTGGCCTCAAAGCCTCTGGAATGGACTaGATAGACTCAATAAATTTG | + |
|
Preference number: 4 (lower is better) Translates to: CHLCFILRQFCCVIVGLKASGMD*IDSINL Trigger: CAAATTTATTGAGTCTATTCAGTCCATTCCAGAGGC...TTTGAGGCCAACAATAACACAGCAGAACTGTCTCAAAATAAAACACAAATGACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR CAA 90 bp | CCCAGCATCTCTGCAGAGAGCTGGAAAGAAAGGCCACACACTCGCCTTGGCAGTGATACTCATCTGCGGTaGCAAATGCTGTGCACTGCA | + |
|
Preference number: 5 (lower is better) Translates to: PSISAESWKERPHTRLGSDTHLR*QMLCTA Trigger: TGCAGTGCACAGCATTTGCAACCGCAGATGAGTATC...ACTGCCAAGGCGAGTGTGTGGCCTTTCTTTCCAGCTCTCTGCAGAGATGCTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR CAA 90 bp | CCCAGCATCTCTGCAGAGAGCTGGAAAGAAAGGCCACACACTCGCCTTGGCAGTGGCACTGATGAGCCTTaGCTGATATGCTGTGTAAAC | + |
|
Preference number: 5 (lower is better) Translates to: PSISAESWKERPHTRLGSGTDEP*LICCVN Trigger: GTTTACACAGCATATCAGCAAAGGCTCATCAGTGCC...ACTGCCAAGGCGAGTGTGTGGCCTTTCTTTCCAGCTCTCTGCAGAGATGCTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR CAA 90 bp | CCCAGCATCTCTGCAGAGAGCTGGAAAGAAAGGCCACACACTCGCCTTGGCAGTAGCTCAGAGTTTAGCTaGATTTCCCCTCTGTGCAGT | + |
|
Preference number: 5 (lower is better) Translates to: PSISAESWKERPHTRLGSSSEFS*ISPLCS Trigger: ACTGCACAGAGGGGAAATCAAGCTAAACTCTGAGCT...ACTGCCAAGGCGAGTGTGTGGCCTTTCTTTCCAGCTCTCTGCAGAGATGCTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS TCA 90 bp | CAGGTTTGCTCTGTCCCAGTAGAAGTCAGGGGTGATCAAGAAATCTaGGCTCAGGTTTATTCGGTGCCTGAGGGCAAAGAGCTCACCCAT | + |
|
Preference number: 5 (lower is better) Translates to: QVCSVPVEVRGDQEI*AQVYSVPEGKELTH Trigger: ATGGGTGAGCTCTTTGCCCTCAGGCACCGAATAAACCTGAGCTCAGATTTCTTGATCACCCCTGACTTCTACTGGGACAGAGCAAACCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS GCA 90 bp | GACCAGCTCTTGAGACAGACTTCCCAGGTGATACTCATCTGCGGTTaGAAATGCTGTGCACTGCATCAGGTCCTCATTCACAGACAGATC | + |
|
Preference number: 5 (lower is better) Translates to: DQLLRQTSQVILICG*KCCALHQVLIHRQI Trigger: GATCTGTCTGTGAATGAGGACCTGATGCAGTGCACAGCATTTGCAACCGCAGATGAGTATCACCTGGGAAGTCTGTCTCAAGAGCTGGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS GCA 90 bp | ACAGGAGACCAGCTCTTGAGACAGACTTCCCAGGTGATACTCATCTaGGGTTGCAAATGCTGTGCACTGCATCAGGTCCTCATTCACAGA | + |
|
Preference number: 5 (lower is better) Translates to: TGDQLLRQTSQVILI*GCKCCALHQVLIHR Trigger: TCTGTGAATGAGGACCTGATGCAGTGCACAGCATTTGCAACCGCAGATGAGTATCACCTGGGAAGTCTGTCTCAAGAGCTGGTCTCCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS GCA 90 bp | CTCTTGAGACAGACTTCCCAGGTGATACTCATCTGCGGTTGCAAATaGTGTGCACTGCATCAGGTCCTCATTCACAGACAGATCTGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: LLRQTSQVILICGCK*CALHQVLIHRQIWK Trigger: CTTCCAGATCTGTCTGTGAATGAGGACCTGATGCAGTGCACAGCATTTGCAACCGCAGATGAGTATCACCTGGGAAGTCTGTCTCAAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR CAA 90 bp | GTAGTGAACGCTGGCTTTGCTGGTTCAGAACTTGACTTCTCTCTTGCCAGTGTGATATGCTGTGTAAACTaGCCAGGGTGTGGAGAAGCC | + |
|
Preference number: 5 (lower is better) Translates to: VVNAGFAGSELDFSLASVICCVN*PGCGEA Trigger: GGCTTCTCCACACCCTGGCAAGTTTACACAGCATAT...CACACTGGCAAGAGAGAAGTCAAGTTCTGAACCAGCAAAGCCAGCGTTCACTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS TCA 90 bp | ATGACGATCATCCACTCCAAGCGGAGTGCTCGCTTCTCATTGAGGTaGTTCCGCATTAGGTCTGTTAGTTCCATGCAGTGCTGCAGTTTT | + |
|
Preference number: 5 (lower is better) Translates to: MTIIHSKRSARFSLR*FRIRSVSSMQCCSF Trigger: AAAACTGCAGCACTGCATGGAACTAACAGACCTAATGCGGAATCACCTCAATGAGAAGCGAGCACTCCGCTTGGAGTGGATGATCGTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042251.11 ENSMUST00000128434.2 |
||
| CDS GCA 90 bp | GTTCTTTGCCGTCCAACCAATGGACAGCATTTAACGGAAAGAGTCTaGTTGTGTCTGATGTTATCCGGCTCATTTCCAGGATCTCTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: VLCRPTNGQHLTERV*LCLMLSGSFPGSLA Trigger: AGCCAGAGATCCTGGAAATGAGCCGGATAACATCAGACACAAGCAGACTCTTTCCGTTAAATGCTGTCCATTGGTTGGACGGCAAAGAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042251.11 ENSMUST00000155172.8 |
||
| CDS TCA 90 bp | TTTCCCCTCTGTGCAGTTTTGATTGTCCCTCTGTCTTTATGTAGTTaGGTTCTTCGTTCTCCCAGTGAACGAGAGCCACTTCATAGGGCT | + |
|
Preference number: 5 (lower is better) Translates to: FPLCAVLIVPLSLCS*VLRSPSEREPLHRA Trigger: AGCCCTATGAAGTGGCTCTCGTTCACTGGGAGAACGAAGAACTCAACTACATAAAGACAGAGGGACAATCAAAACTGCACAGAGGGGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS GCA 90 bp | ACCTTCTTTTGCAGAACTTTCCACACCCATCACCAAAATATTTGCTaGATCTCTAGGCAGGCTTGTCACTTCCACATAGCCACAGGAGAC | + |
|
Preference number: 5 (lower is better) Translates to: TFFCRTFHTHHQNIC*ISRQACHFHIATGD Trigger: GTCTCCTGTGGCTATGTGGAAGTGACAAGCCTGCCTAGAGATGCAGCAAATATTTTGGTGATGGGTGTGGAAAGTTCTGCAAAAGAAGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR CAA 90 bp | GTAGTGAACGCTGGCTTTGCTGGTTCAGAACTTGACTTCTCTCTTGCCAGTGTGGAACAAGTGCTTCATTaGATACAGATGAGTGATGCC | + |
|
Preference number: 5 (lower is better) Translates to: VVNAGFAGSELDFSLASVEQVLH*IQMSDA Trigger: GGCATCACTCATCTGTATCAAATGAAGCACTTGTTC...CACACTGGCAAGAGAGAAGTCAAGTTCTGAACCAGCAAAGCCAGCGTTCACTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS GCA 90 bp | ATCACCTTCTTTTGCAGAACTTTCCACACCCATCACCAAAATATTTaGTGCATCTCTAGGCAGGCTTGTCACTTCCACATAGCCACAGGA | + |
|
Preference number: 5 (lower is better) Translates to: ITFFCRTFHTHHQNI*CISRQACHFHIATG Trigger: TCCTGTGGCTATGTGGAAGTGACAAGCCTGCCTAGAGATGCAGCAAATATTTTGGTGATGGGTGTGGAAAGTTCTGCAAAAGAAGGTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS TCA 90 bp | TGCCTGAGGGCAAAGAGCTCACCCATTTTCTGCATAACTTCTTTATaGGACAGTTTGACTTTCTTCCCAGCTTTTAATGCCTCTGGAATG | + |
|
Preference number: 5 (lower is better) Translates to: CLRAKSSPIFCITSL*DSLTFFPAFNASGM Trigger: CATTCCAGAGGCATTAAAAGCTGGGAAGAAAGTCAAACTGTCTCATAAAGAAGTTATGCAGAAAATGGGTGAGCTCTTTGCCCTCAGGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS-3UTR CAA 90 bp | GCAACATTTAAAAATGTTAACTTTTGCTGGGCAGTGGTGGTGCACACCTTTAATCGGGATCACCTTCTTTaGCAGAACTTTCCACACCCA | + |
|
Preference number: 5 (lower is better) Translates to: ATFKNVNFCWAVVVHTFNRDHLL*QNFPHP Trigger: TGGGTGTGGAAAGTTCTGCAAAAGAAGGTGATCCCG...ATTAAAGGTGTGCACCACCACTGCCCAGCAAAAGTTAACATTTTTAAATGTTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS CCA 90 bp | CTTGGAAAGAATGAGTGTAAATGTTGCTGTATTGTCAGGCCATTGTaGCATGTTGTACTTTCAGATTTCCTAAGTGGTCTTAATGTAAGC | + |
|
Preference number: 5 (lower is better) Translates to: LGKNECKCCCIVRPL*HVVLSDFLSGLNVS Trigger: GCTTACATTAAGACCACTTAGGAAATCTGAAAGTACAACATGCCACAATGGCCTGACAATACAGCAACATTTACACTCATTCTTTCCAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042251.11 ENSMUST00000126102.8 ENSMUST00000155172.8 |
||
| CDS CAA 72 bp | GGGTCATGCTCCTGTGAGTCCCAAAGGGGTGCATGCTaGGCCAGTGTTCTTTGCCGTCCAACCAATGGACAG | + |
|
Preference number: 6 (lower is better) Translates to: GSCSCESQRGAC*ASVLCRPTNGQ Trigger: CTGTCCATTGGTTGGACGGCAAAGAACACTGGCCAAGCATGCACCCCTTTGGGACTCACAGGAGCATGACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042251.11 ENSMUST00000155172.8 |
||
| CDS GCA 72 bp | CAGCTCTTGAGACAGACTTCCCAGGTGATACTCATCTaGGGTTGCAAATGCTGTGCACTGCATCAGGTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: QLLRQTSQVILI*GCKCCALHQVL Trigger: GAGGACCTGATGCAGTGCACAGCATTTGCAACCGCAGATGAGTATCACCTGGGAAGTCTGTCTCAAGAGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
||
| CDS CAA 90 bp | TCTAGGCAGGCTTGTCACTTCCACATAGCCACAGGAGACCAGCTCTaGAGACAGACTTCCCAGGTGATACTCATCTGCGGTTGCAAATGC | + |
|
Preference number: 6 (lower is better) Translates to: SRQACHFHIATGDQL*RQTSQVILICGCKC Trigger: GCATTTGCAACCGCAGATGAGTATCACCTGGGAAGTCTGTCTCAAGAGCTGGTCTCCTGTGGCTATGTGGAAGTGACAAGCCTGCCTAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS CAA 90 bp | AGGGTTGCTTCCCAAATAGCCAGCTTCACTGACAGGCAGAGAGCGTaGGAGAACGCAAATTTCTCTAGAATGGCGTCATCCAAGTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: RVASQIASFTDRQRA*ENANFSRMASSKSS Trigger: GCTGGACTTGGATGACGCCATTCTAGAGAAATTTGCGTTCTCCAACGCTCTCTGCCTGTCAGTGAAGCTGGCTATTTGGGAAGCAACCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS TCA 72 bp | ATCCACTCCAAGCGGAGTGCTCGCTTCTCATTGAGGTaGTTCCGCATTAGGTCTGTTAGTTCCATGCAGTGC | + |
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Preference number: 6 (lower is better) Translates to: IHSKRSARFSLR*FRIRSVSSMQC Trigger: GCACTGCATGGAACTAACAGACCTAATGCGGAATCACCTCAATGAGAAGCGAGCACTCCGCTTGGAGTGGAT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042251.11 ENSMUST00000128434.2 |
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| CDS TCA 72 bp | CGATCATCCACTCCAAGCGGAGTGCTCGCTTCTCATTaGGGTGATTCCGCATTAGGTCTGTTAGTTCCATGC | + |
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Preference number: 6 (lower is better) Translates to: RSSTPSGVLASH*GDSALGLLVPC Trigger: GCATGGAACTAACAGACCTAATGCGGAATCACCTCAATGAGAAGCGAGCACTCCGCTTGGAGTGGATGATCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042251.11 ENSMUST00000128434.2 |
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| CDS GCA 72 bp | CAGACTTCCCAGGTGATACTCATCTGCGGTTGCAAATaGTGTGCACTGCATCAGGTCCTCATTCACAGACAG | + |
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Preference number: 6 (lower is better) Translates to: QTSQVILICGCK*CALHQVLIHRQ Trigger: CTGTCTGTGAATGAGGACCTGATGCAGTGCACAGCATTTGCAACCGCAGATGAGTATCACCTGGGAAGTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS CAA 90 bp | AGACCAGCTCTTGAGACAGACTTCCCAGGTGATACTCATCTGCGGTaGCAAATGCTGTGCACTGCATCAGGTCCTCATTCACAGACAGAT | + |
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Preference number: 6 (lower is better) Translates to: RPALETDFPGDTHLR*QMLCTASGPHSQTD Trigger: ATCTGTCTGTGAATGAGGACCTGATGCAGTGCACAGCATTTGCAACCGCAGATGAGTATCACCTGGGAAGTCTGTCTCAAGAGCTGGTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS TCA 72 bp | TTTGTCCAGGGTTGCTTCCCAAATAGCCAGCTTCACTaGCAGGCAGAGAGCGTTGGAGAACGCAAATTTCTC | + |
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Preference number: 6 (lower is better) Translates to: FVQGCFPNSQLH*QAESVGERKFL Trigger: GAGAAATTTGCGTTCTCCAACGCTCTCTGCCTGTCAGTGAAGCTGGCTATTTGGGAAGCAACCCTGGACAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS TCA 72 bp | TCTGTCCCAGTAGAAGTCAGGGGTGATCAAGAAATCTaGGCTCAGGTTTATTCGGTGCCTGAGGGCAAAGAG | + |
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Preference number: 6 (lower is better) Translates to: SVPVEVRGDQEI*AQVYSVPEGKE Trigger: CTCTTTGCCCTCAGGCACCGAATAAACCTGAGCTCAGATTTCTTGATCACCCCTGACTTCTACTGGGACAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS CAA 72 bp | CTTGAGACAGACTTCCCAGGTGATACTCATCTGCGGTaGCAAATGCTGTGCACTGCATCAGGTCCTCATTCA | + |
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Preference number: 6 (lower is better) Translates to: LETDFPGDTHLR*QMLCTASGPHS Trigger: TGAATGAGGACCTGATGCAGTGCACAGCATTTGCAACCGCAGATGAGTATCACCTGGGAAGTCTGTCTCAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS CAA 72 bp | TCCCAAATAGCCAGCTTCACTGACAGGCAGAGAGCGTaGGAGAACGCAAATTTCTCTAGAATGGCGTCATCC | + |
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Preference number: 6 (lower is better) Translates to: SQIASFTDRQRA*ENANFSRMASS Trigger: GGATGACGCCATTCTAGAGAAATTTGCGTTCTCCAACGCTCTCTGCCTGTCAGTGAAGCTGGCTATTTGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS TCA 72 bp | GAATGGCGTCATCCAAGTCCAGCTCAGAGTTTAGCTTaGTTTCCCCTCTGTGCAGTTTTGATTGTCCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: EWRHPSPAQSLA*FPLCAVLIVPL Trigger: CAGAGGGACAATCAAAACTGCACAGAGGGGAAATCAAGCTAAACTCTGAGCTGGACTTGGATGACGCCATTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS GCA 72 bp | GGGGTGATCAAGAAATCTGAGCTCAGGTTTATTCGGTaGCTGAGGGCAAAGAGCTCACCCATTTTCTGCATA | + |
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Preference number: 6 (lower is better) Translates to: GVIKKSELRFIR*LRAKSSPIFCI Trigger: TATGCAGAAAATGGGTGAGCTCTTTGCCCTCAGGCACCGAATAAACCTGAGCTCAGATTTCTTGATCACCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS GCA 72 bp | GAACTGGCAGGTCTTGTCATAAAGCTCTTCCAGGTTTaGTCTGTCCCAGTAGAAGTCAGGGGTGATCAAGAA | + |
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Preference number: 6 (lower is better) Translates to: ELAGLVIKLFQV*SVPVEVRGDQE Trigger: TTCTTGATCACCCCTGACTTCTACTGGGACAGAGCAAACCTGGAAGAGCTTTATGACAAGACCTGCCAGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042251.11 ENSMUST00000128434.2 |
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| CDS CAA 90 bp | CTTTGCCGTCCAACCAATGGACAGCATTTAACGGAAAGAGTCTGCTaGTGTCTGATGTTATCCGGCTCATTTCCAGGATCTCTGGCTTAT | + |
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Preference number: 6 (lower is better) Translates to: LCRPTNGQHLTERVC*CLMLSGSFPGSLAY Trigger: ATAAGCCAGAGATCCTGGAAATGAGCCGGATAACATCAGACACAAGCAGACTCTTTCCGTTAAATGCTGTCCATTGGTTGGACGGCAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042251.11 ENSMUST00000155172.8 |
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| CDS GCA 72 bp | TGCAGAACTTTCCACACCCATCACCAAAATATTTGCTaGATCTCTAGGCAGGCTTGTCACTTCCACATAGCC | + |
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Preference number: 6 (lower is better) Translates to: CRTFHTHHQNIC*ISRQACHFHIA Trigger: GGCTATGTGGAAGTGACAAGCCTGCCTAGAGATGCAGCAAATATTTTGGTGATGGGTGTGGAAAGTTCTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS CAA 72 bp | AGAATGGCGTCATCCAAGTCCAGCTCAGAGTTTAGCTaGATTTCCCCTCTGTGCAGTTTTGATTGTCCCTCT | + |
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Preference number: 6 (lower is better) Translates to: RMASSKSSSEFS*ISPLCSFDCPS Trigger: AGAGGGACAATCAAAACTGCACAGAGGGGAAATCAAGCTAAACTCTGAGCTGGACTTGGATGACGCCATTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS CAA 72 bp | CCAACCAATGGACAGCATTTAACGGAAAGAGTCTGCTaGTGTCTGATGTTATCCGGCTCATTTCCAGGATCT | + |
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Preference number: 6 (lower is better) Translates to: PTNGQHLTERVC*CLMLSGSFPGS Trigger: AGATCCTGGAAATGAGCCGGATAACATCAGACACAAGCAGACTCTTTCCGTTAAATGCTGTCCATTGGTTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042251.11 ENSMUST00000155172.8 |
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| CDS CAA 90 bp | AATTTCTCTAGAATGGCGTCATCCAAGTCCAGCTCAGAGTTTAGCTaGATTTCCCCTCTGTGCAGTTTTGATTGTCCCTCTGTCTTTATG | + |
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Preference number: 6 (lower is better) Translates to: NFSRMASSKSSSEFS*ISPLCSFDCPSVFM Trigger: CATAAAGACAGAGGGACAATCAAAACTGCACAGAGGGGAAATCAAGCTAAACTCTGAGCTGGACTTGGATGACGCCATTCTAGAGAAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042251.11 |
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| CDS CAA 90 bp | TCATTTCCAGGATCTCTGGCTTATTCAAACTGTCAGCTGTTATACTaGGAAAGAATGAGTGTAAATGTTGCTGTATTGTCAGGCCATTGT | + |
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Preference number: 6 (lower is better) Translates to: SFPGSLAYSNCQLLY*ERMSVNVAVLSGHC Trigger: ACAATGGCCTGACAATACAGCAACATTTACACTCATTCTTTCCAAGTATAACAGCTGACAGTTTGAATAAGCCAGAGATCCTGGAAATGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042251.11 ENSMUST00000126102.8 ENSMUST00000155172.8 |
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| CDS CCA 72 bp | AATGAGTGTAAATGTTGCTGTATTGTCAGGCCATTGTaGCATGTTGTACTTTCAGATTTCCTAAGTGGTCTT | + |
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Preference number: 6 (lower is better) Translates to: NECKCCCIVRPL*HVVLSDFLSGL Trigger: AAGACCACTTAGGAAATCTGAAAGTACAACATGCCACAATGGCCTGACAATACAGCAACATTTACACTCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042251.11 ENSMUST00000126102.8 ENSMUST00000155172.8 |
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| CDS CAA 72 bp | GGATCTCTGGCTTATTCAAACTGTCAGCTGTTATACTaGGAAAGAATGAGTGTAAATGTTGCTGTATTGTCA | + |
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Preference number: 6 (lower is better) Translates to: GSLAYSNCQLLY*ERMSVNVAVLS Trigger: TGACAATACAGCAACATTTACACTCATTCTTTCCAAGTATAACAGCTGACAGTTTGAATAAGCCAGAGATCC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042251.11 ENSMUST00000126102.8 ENSMUST00000155172.8 |
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