Pregenerated sensors for RMDN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070730Ensembl transcript IDs: ENSMUST00000094695.12, ENSMUST00000129351.2, ENSMUST00000135419.8, ENSMUST00000139519.2
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTTTGCCAGCGTTGTCATCCCAAAAGCTGCCAGGTCTCCAGTCCATaGTCCAGCCCTCACCCAGGAATACAGGGAGCGTATTATATACAT | + |
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Preference number: 1 (lower is better) Translates to: LCQRCHPKSCQVSSP*SSPHPGIQGAYYIH Trigger: ATGTATATAATACGCTCCCTGTATTCCTGGGTGAGGGCTGGACCATGGACTGGAGACCTGGCAGCTTTTGGGATGACAACGCTGGCAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| 3UTR CCA 90 bp | AAGTCCTATGCTCTGTTGTGTGGCTCTGAAGTCCATCCACCTCACTaGCAGCTGGAAGACAGTTCTGCTACTTCATTCTCAGCTCTTGGC | + |
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Preference number: 1 (lower is better) Translates to: KSYALLCGSEVHPPH*QLEDSSATSFSALG Trigger: GCCAAGAGCTGAGAATGAAGTAGCAGAACTGTCTTCCAGCTGCCAGTGAGGTGGATGGACTTCAGAGCCACACAACAGAGCATAGGACTT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| 3UTR TCA 90 bp | GCCTTCTGGGCTGGGTCCACACTAAACCCTATGGCTATACTGTCTTaGTTTTTCAAGAATTCACTTAAGAGGAAGAAAGCAGAAACCTTA | + |
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Preference number: 1 (lower is better) Translates to: AFWAGSTLNPMAILS*FFKNSLKRKKAETL Trigger: TAAGGTTTCTGCTTTCTTCCTCTTAAGTGAATTCTTGAAAAATCAAGACAGTATAGCCATAGGGTTTAGTGTGGACCCAGCCCAGAAGGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| 3UTR-3UTR TCA 90 bp | TCAGCTCTTGGCCTTCTGGGCTGGGTCCACACTAAACCCTATGGCTATACTGTCCCTTGCTTGGCTTCCTaGACTCCATGGGGGAGTCAC | + |
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Preference number: 2 (lower is better) Translates to: SALGLLGWVHTKPYGYTVPCLAS*TPWGSH Trigger: GTGACTCCCCCATGGAGTTCAGGAAGCCAAGCAAGG...GACAGTATAGCCATAGGGTTTAGTGTGGACCCAGCCCAGAAGGCCAAGAGCTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| 3UTR-3UTR TCA 90 bp | GCTCTTGGCCTTCTGGGCTGGGTCCACACTAAACCCTATGGCTATACTGTCTTGGATAACATAAAAAGCTaGGGGATGGTGGTGTTAGCA | + |
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Preference number: 2 (lower is better) Translates to: ALGLLGWVHTKPYGYTVLDNIKS*GMVVLA Trigger: TGCTAACACCACCATCCCTCAGCTTTTTATGTTATC...CAAGACAGTATAGCCATAGGGTTTAGTGTGGACCCAGCCCAGAAGGCCAAGAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| 3UTR-3UTR GCA 90 bp | CAGGCACCTCTCCAGATAAGTCACTTTCAAAATAGATTCATAGACCCTTTGCCAGCAGTACCTGGGCTGTaGTGGCTCCTTTTGTCCTCG | + |
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Preference number: 2 (lower is better) Translates to: QAPLQISHFQNRFIDPLPAVPGL*WLLLSS Trigger: CGAGGACAAAAGGAGCCAGCACAGCCCAGGTACTGC...TGGCAAAGGGTCTATGAATCTATTTTGAAAGTGACTTATCTGGAGAGGTGCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| 3UTR-3UTR CCA 90 bp | CAGGCACCTCTCCAGATAAGTCACTTTCAAAATAGATTCATAGACCCTTTGCCACAGCTCTTGGCCTTCTaGGCTGGGTCCACACTAAAC | + |
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Preference number: 2 (lower is better) Translates to: QAPLQISHFQNRFIDPLPQLLAF*AGSTLN Trigger: GTTTAGTGTGGACCCAGCCCAGAAGGCCAAGAGCTG...TGGCAAAGGGTCTATGAATCTATTTTGAAAGTGACTTATCTGGAGAGGTGCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| 3UTR-3UTR TCA 90 bp | CAGGCACCTCTCCAGATAAGTCACTTTCAAAATAGATTCATAGACCCTTTGCCATCTGTTGTGTGGCTCTaGAGTCCATCCACCTCACTG | + |
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Preference number: 2 (lower is better) Translates to: QAPLQISHFQNRFIDPLPSVVWL*SPSTSL Trigger: CAGTGAGGTGGATGGACTTCAGAGCCACACAACAGA...TGGCAAAGGGTCTATGAATCTATTTTGAAAGTGACTTATCTGGAGAGGTGCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| 3UTR-3UTR CCA 90 bp | CAGGCACCTCTCCAGATAAGTCACTTTCAAAATAGATTCATAGACCCTTTGCCATTCATTCTCAGCTCTTaGCCTTCTGGGCTGGGTCCA | + |
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Preference number: 2 (lower is better) Translates to: QAPLQISHFQNRFIDPLPFILSS*PSGLGP Trigger: TGGACCCAGCCCAGAAGGCCAAGAGCTGAGAATGAA...TGGCAAAGGGTCTATGAATCTATTTTGAAAGTGACTTATCTGGAGAGGTGCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| 3UTR-3UTR CAA 90 bp | TCTCCAGTCCATGGTCCAGCCCTCACCCAGGAATACAGGGAGCGTATTATATACAGGGGCCAGGACACCTaGCTTGGCTTCCTGAACTCC | + |
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Preference number: 3 (lower is better) Translates to: SPVHGPALTQEYRERIIYRGQDT*LGFLNS Trigger: GGAGTTCAGGAAGCCAAGCAAGGTGTCCTGGCCCCT...GTATATAATACGCTCCCTGTATTCCTGGGTGAGGGCTGGACCATGGACTGGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| 3UTR CCA 72 bp | GCTCTGTTGTGTGGCTCTGAAGTCCATCCACCTCACTaGCAGCTGGAAGACAGTTCTGCTACTTCATTCTCA | + |
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Preference number: 3 (lower is better) Translates to: ALLCGSEVHPPH*QLEDSSATSFS Trigger: TGAGAATGAAGTAGCAGAACTGTCTTCCAGCTGCCAGTGAGGTGGATGGACTTCAGAGCCACACAACAGAGC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| 3UTR CCA 72 bp | TCTGCTACTTCATTCTCAGCTCTTGGCCTTCTGGGCTaGGTCCACACTAAACCCTATGGCTATACTGTCTTG | + |
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Preference number: 3 (lower is better) Translates to: SATSFSALGLLG*VHTKPYGYTVL Trigger: CAAGACAGTATAGCCATAGGGTTTAGTGTGGACCCAGCCCAGAAGGCCAAGAGCTGAGAATGAAGTAGCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| 3UTR CCA 72 bp | ACAGTTCTGCTACTTCATTCTCAGCTCTTGGCCTTCTaGGCTGGGTCCACACTAAACCCTATGGCTATACTG | + |
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Preference number: 3 (lower is better) Translates to: TVLLLHSQLLAF*AGSTLNPMAIL Trigger: CAGTATAGCCATAGGGTTTAGTGTGGACCCAGCCCAGAAGGCCAAGAGCTGAGAATGAAGTAGCAGAACTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR TCA 90 bp | CCTTTGCCAGCGTTGTCATCCCAAAAGCTGCCAGGTCTCCAGTCCATGGTCCAGCTGGCGTCCACGCTCTaGAGCCTGCGCATAGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: PLPALSSQKLPGLQSMVQLASTL*SLRIVQ Trigger: CTGGACTATGCGCAGGCTTCAGAGCGTGGACGCCAG...CTGGACCATGGACTGGAGACCTGGCAGCTTTTGGGATGACAACGCTGGCAAAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR TCA 90 bp | CCACCTCACTGGCAGCTGGAAGACAGTTCTGCTACTTCATTCTCAGCTCTTGGCGAGTTGGGCAGACTGTaGCTCCGGCCATGGCGCTGG | + |
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Preference number: 4 (lower is better) Translates to: PPHWQLEDSSATSFSALGELGRL*LRPWRW Trigger: CCAGCGCCATGGCCGGAGTCACAGTCTGCCCAACTC...GCCAAGAGCTGAGAATGAAGTAGCAGAACTGTCTTCCAGCTGCCAGTGAGGTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR CCA 90 bp | CCACCTCACTGGCAGCTGGAAGACAGTTCTGCTACTTCATTCTCAGCTCTTGGCCTCCGGCCATGGCGCTaGGTCCGTTTCCATCGCTGG | + |
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Preference number: 4 (lower is better) Translates to: PPHWQLEDSSATSFSALGLRPWR*VRFHRW Trigger: CCAGCGATGGAAACGGACCCAGCGCCATGGCCGGAG...GCCAAGAGCTGAGAATGAAGTAGCAGAACTGTCTTCCAGCTGCCAGTGAGGTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR CCA 90 bp | CCTTTGCCAGCGTTGTCATCCCAAAAGCTGCCAGGTCTCCAGTCCATGGTCCAGCATAGTCCAGGGAGTTaGGCAGACTGTGACTCCGGC | + |
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Preference number: 4 (lower is better) Translates to: PLPALSSQKLPGLQSMVQHSPGS*ADCDSG Trigger: GCCGGAGTCACAGTCTGCCCAACTCCCTGGACTATG...CTGGACCATGGACTGGAGACCTGGCAGCTTTTGGGATGACAACGCTGGCAAAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| 3UTR CAA 72 bp | GGTGTTAGCAGTCAGATCTCCAGGGGCCAGGACACCTaGCTTGGCTTCCTGAACTCCATGGGGGAGTCACAG | + |
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Preference number: 4 (lower is better) Translates to: GVSSQISRGQDT*LGFLNSMGESQ Trigger: CTGTGACTCCCCCATGGAGTTCAGGAAGCCAAGCAAGGTGTCCTGGCCCCTGGAGATCTGACTGCTAACACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR TCA 90 bp | TTCTCAGCTCTTGGCCTTCTGGGCTGGGTCCACACTAAACCCTATGGCTATACTCCTTGCAGGCTTCTCTaGAGCTCCTCCACCTCGCGC | + |
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Preference number: 4 (lower is better) Translates to: FSALGLLGWVHTKPYGYTPCRLL*SSSTSR Trigger: GCGCGAGGTGGAGGAGCTTCAGAGAAGCCTGCAAGG...AGTATAGCCATAGGGTTTAGTGTGGACCCAGCCCAGAAGGCCAAGAGCTGAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR TCA 90 bp | TTCTCAGCTCTTGGCCTTCTGGGCTGGGTCCACACTAAACCCTATGGCTATACTCCCCTGAGGAGGCGGTaGAGTAGACAGAGCTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: FSALGLLGWVHTKPYGYTPLRRR*SRQSWS Trigger: GCTCCAGCTCTGTCTACTTCACCGCCTCCTCAGGGG...AGTATAGCCATAGGGTTTAGTGTGGACCCAGCCCAGAAGGCCAAGAGCTGAGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR GCA 90 bp | TCAGCTCTTGGCCTTCTGGGCTGGGTCCACACTAAACCCTATGGCTATACTGTCCCCGCTTGTCCTGCTTaGTGCCCTGGTGCAGCTCAT | + |
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Preference number: 4 (lower is better) Translates to: SALGLLGWVHTKPYGYTVPACPA*CPGAAH Trigger: ATGAGCTGCACCAGGGCAGCAAGCAGGACAAGCGGG...GACAGTATAGCCATAGGGTTTAGTGTGGACCCAGCCCAGAAGGCCAAGAGCTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR CCA 90 bp | CCTTTGCCAGCGTTGTCATCCCAAAAGCTGCCAGGTCTCCAGTCCATGGTCCAGTTGTTGAGCAGCAGCTaGAAGCCTTCCCGCTTGTCC | + |
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Preference number: 4 (lower is better) Translates to: PLPALSSQKLPGLQSMVQLLSSS*KPSRLS Trigger: GGACAAGCGGGAAGGCTTCCAGCTGCTGCTCAACAA...CTGGACCATGGACTGGAGACCTGGCAGCTTTTGGGATGACAACGCTGGCAAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR TCA 90 bp | CCTTTGCCAGCGTTGTCATCCCAAAAGCTGCCAGGTCTCCAGTCCATGGTCCAGACGTCTGGCAGTTCCTaGGCCAGCTTCATCCACTTT | + |
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Preference number: 4 (lower is better) Translates to: PLPALSSQKLPGLQSMVQTSGSS*ASFIHF Trigger: AAAGTGGATGAAGCTGGCTCAGGAACTGCCAGACGT...CTGGACCATGGACTGGAGACCTGGCAGCTTTTGGGATGACAACGCTGGCAAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR GCA 90 bp | TCTCCAGTCCATGGTCCAGCCCTCACCCAGGAATACAGGGAGCGTATTATATACTGCAGCAGGACCAGCTaGACATCCTCTCGGCCTGAG | + |
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Preference number: 4 (lower is better) Translates to: SPVHGPALTQEYRERIIYCSRTS*TSSRPE Trigger: CTCAGGCCGAGAGGATGTGCAGCTGGTCCTGCTGCA...GTATATAATACGCTCCCTGTATTCCTGGGTGAGGGCTGGACCATGGACTGGAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR GCA 90 bp | CCACCTCACTGGCAGCTGGAAGACAGTTCTGCTACTTCATTCTCAGCTCTTGGCCTGACCACAGAGCACTaGATACCACAGGTGGCACGC | + |
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Preference number: 4 (lower is better) Translates to: PPHWQLEDSSATSFSALGLTTEH*IPQVAR Trigger: GCGTGCCACCTGTGGTATGCAGTGCTCTGTGGTCAG...GCCAAGAGCTGAGAATGAAGTAGCAGAACTGTCTTCCAGCTGCCAGTGAGGTGG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR CCA 90 bp | ACCTCACTGGCAGCTGGAAGACAGTTCTGCTACTTCATTCTCAGCTCTTGGCCTCAGAGCTGGAGCCCGTaGAGTCACTCCTCTCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: TSLAAGRQFCYFILSSWPQSWSP*SHSSLW Trigger: CCAGAGAGAGGAGTGACTCCACGGGCTCCAGCTCTG...AGGCCAAGAGCTGAGAATGAAGTAGCAGAACTGTCTTCCAGCTGCCAGTGAGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR TCA 90 bp | ACCTCACTGGCAGCTGGAAGACAGTTCTGCTACTTCATTCTCAGCTCTTGGCCTCTGCCAAGAAGAAAGTaGCCCCTGGGGTCTTCTGGC | + |
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Preference number: 4 (lower is better) Translates to: TSLAAGRQFCYFILSSWPLPRRK*PLGSSG Trigger: GCCAGAAGACCCCAGGGGTCACTTTCTTCTTGGCAG...AGGCCAAGAGCTGAGAATGAAGTAGCAGAACTGTCTTCCAGCTGCCAGTGAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR GCA 90 bp | ACCTCACTGGCAGCTGGAAGACAGTTCTGCTACTTCATTCTCAGCTCTTGGCCTTCCAGCACCTTCTCCTaGCCTTCCTGTGAGAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: TSLAAGRQFCYFILSSWPSSTFS*PSCERL Trigger: CAGCCTCTCACAGGAAGGGCAGGAGAAGGTGCTGGA...AGGCCAAGAGCTGAGAATGAAGTAGCAGAACTGTCTTCCAGCTGCCAGTGAGGT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR GCA 90 bp | TCAGCTCTTGGCCTTCTGGGCTGGGTCCACACTAAACCCTATGGCTATACTGTCGGATGCGTTTCGAGATaGCCTCATGCTCAGCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: SALGLLGWVHTKPYGYTVGCVSR*PHAQPA Trigger: AGCTGGCTGAGCATGAGGGCATCTCGAAACGCATCC...GACAGTATAGCCATAGGGTTTAGTGTGGACCCAGCCCAGAAGGCCAAGAGCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR CCA 90 bp | TCAGCTCTTGGCCTTCTGGGCTGGGTCCACACTAAACCCTATGGCTATACTGTCAGAGGCTGGGCAGTATaGCAGCATCTCCAGCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: SALGLLGWVHTKPYGYTVRGWAV*QHLQLH Trigger: GTGAAGCTGGAGATGCTGCCATACTGCCCAGCCTCT...GACAGTATAGCCATAGGGTTTAGTGTGGACCCAGCCCAGAAGGCCAAGAGCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR CCA 90 bp | GCTCTTGGCCTTCTGGGCTGGGTCCACACTAAACCCTATGGCTATACTGTCTTGAGTCACTCCTCTCTCTaGCAAAAGGGAACCTGCGCC | + |
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Preference number: 4 (lower is better) Translates to: ALGLLGWVHTKPYGYTVLSHSSL*QKGTCA Trigger: GGCGCAGGTTCCCTTTTGCCAGAGAGAGGAGTGACT...CAAGACAGTATAGCCATAGGGTTTAGTGTGGACCCAGCCCAGAAGGCCAAGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR CCA 90 bp | CCTTTGCCAGCGTTGTCATCCCAAAAGCTGCCAGGTCTCCAGTCCATGGTCCAGAAGCTAAAGCCACTCTaGATGCGTTTCGAGATGCCC | + |
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Preference number: 4 (lower is better) Translates to: PLPALSSQKLPGLQSMVQKLKPL*MRFEMP Trigger: GGGCATCTCGAAACGCATCCAGAGTGGCTTTAGCTT...CTGGACCATGGACTGGAGACCTGGCAGCTTTTGGGATGACAACGCTGGCAAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR TCA 90 bp | GCTCTTGGCCTTCTGGGCTGGGTCCACACTAAACCCTATGGCTATACTGTCTTGACGCCAGCTTATTGTTaGGCAGCAGCTGGAAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: ALGLLGWVHTKPYGYTVLTPAYC*AAAGSL Trigger: AAGGCTTCCAGCTGCTGCTCAACAATAAGCTGGCGT...CAAGACAGTATAGCCATAGGGTTTAGTGTGGACCCAGCCCAGAAGGCCAAGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR TCA 90 bp | GGTCCAGCCCTCACCCAGGAATACAGGGAGCGTATTATATACATGATGGGTGGTCTCCTCAGTAAGGTCTaGCATGTCACTGTAGGCCCG | + |
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Preference number: 4 (lower is better) Translates to: GPALTQEYRERIIYMMGGLLSKV*HVTVGP Trigger: CGGGCCTACAGTGACATGTCAGACCTTACTGAGGAG...ACCACCCATCATGTATATAATACGCTCCCTGTATTCCTGGGTGAGGGCTGGACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR GCA 90 bp | TTCTCAGCTCTTGGCCTTCTGGGCTGGGTCCACACTAAACCCTATGGCTATACTCCTGGTAGCACCACCTaGCAAGAAGAAAGTGACCCC | + |
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Preference number: 4 (lower is better) Translates to: FSALGLLGWVHTKPYGYTPGSTT*QEESDP Trigger: GGGGTCACTTTCTTCTTGGCAGGTGGTGCTACCAGG...AGTATAGCCATAGGGTTTAGTGTGGACCCAGCCCAGAAGGCCAAGAGCTGAGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR CCA 90 bp | CCACCTCACTGGCAGCTGGAAGACAGTTCTGCTACTTCATTCTCAGCTCTTGGCACTGCATACCACAGGTaGCACGCAGCACTCTCATCT | + |
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Preference number: 4 (lower is better) Translates to: PPHWQLEDSSATSFSALGTAYHR*HAALSS Trigger: AGATGAGAGTGCTGCGTGCCACCTGTGGTATGCAGT...GCCAAGAGCTGAGAATGAAGTAGCAGAACTGTCTTCCAGCTGCCAGTGAGGTGG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR TCA 90 bp | TCTCCAGTCCATGGTCCAGCCCTCACCCAGGAATACAGGGAGCGTATTATATACCTGGGGTCTTCTGGCTaGAGTTCAATGGCTTTGTCC | + |
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Preference number: 4 (lower is better) Translates to: SPVHGPALTQEYRERIIYLGSSG*SSMALS Trigger: GGACAAAGCCATTGAACTTCAGCCAGAAGACCCCAG...GTATATAATACGCTCCCTGTATTCCTGGGTGAGGGCTGGACCATGGACTGGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR CCA 90 bp | CCACCTCACTGGCAGCTGGAAGACAGTTCTGCTACTTCATTCTCAGCTCTTGGCCTCATTAGTGACGTCTaGCAGTTCCTGAGCCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: PPHWQLEDSSATSFSALGLISDV*QFLSQL Trigger: AAGCTGGCTCAGGAACTGCCAGACGTCACTAATGAG...GCCAAGAGCTGAGAATGAAGTAGCAGAACTGTCTTCCAGCTGCCAGTGAGGTGG 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR GCA 90 bp | TTCTCAGCTCTTGGCCTTCTGGGCTGGGTCCACACTAAACCCTATGGCTATACTGCCTTAAGGAAACTCTaGAGAGCGTCCTGCACAGTA | + |
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Preference number: 4 (lower is better) Translates to: FSALGLLGWVHTKPYGYTALRKL*RASCTV Trigger: TACTGTGCAGGACGCTCTGCAGAGTTTCCTTAAGGC...AGTATAGCCATAGGGTTTAGTGTGGACCCAGCCCAGAAGGCCAAGAGCTGAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR CCA 90 bp | TTCTCAGCTCTTGGCCTTCTGGGCTGGGTCCACACTAAACCCTATGGCTATACTACCCCTGGGGTCTTCTaGCTGAAGTTCAATGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: FSALGLLGWVHTKPYGYTTPGVF*LKFNGF Trigger: AAAGCCATTGAACTTCAGCCAGAAGACCCCAGGGGT...AGTATAGCCATAGGGTTTAGTGTGGACCCAGCCCAGAAGGCCAAGAGCTGAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR CCA 90 bp | ACCTCACTGGCAGCTGGAAGACAGTTCTGCTACTTCATTCTCAGCTCTTGGCCTGAAGAAAGTGACCCCTaGGGTCTTCTGGCTGAAGTT | + |
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Preference number: 4 (lower is better) Translates to: TSLAAGRQFCYFILSSWPEESDP*GLLAEV Trigger: AACTTCAGCCAGAAGACCCCAGGGGTCACTTTCTTC...AGGCCAAGAGCTGAGAATGAAGTAGCAGAACTGTCTTCCAGCTGCCAGTGAGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR CCA 90 bp | GGTCCAGCCCTCACCCAGGAATACAGGGAGCGTATTATATACATGATGGGTGGTAATCAGACTCCGCGTTaGCTGTTGTATAACCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: GPALTQEYRERIIYMMGGNQTPR*LLYNLP Trigger: AGGGAGGTTATACAACAGCCAACGCGGAGTCTGATT...ACCACCCATCATGTATATAATACGCTCCCTGTATTCCTGGGTGAGGGCTGGACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR TCA 90 bp | TGGGTCCACACTAAACCCTATGGCTATACTGTCTTGATTTTTCAAGAATTCACTTGTGAGTGCAGCCCCTaGGGAGGCGGTGAAGTAGAC | + |
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Preference number: 4 (lower is better) Translates to: WVHTKPYGYTVLIFQEFTCECSP*GGGEVD Trigger: GTCTACTTCACCGCCTCCTCAGGGGCTGCACTCACA...AGTGAATTCTTGAAAAATCAAGACAGTATAGCCATAGGGTTTAGTGTGGACCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR TCA 90 bp | TCTCCAGTCCATGGTCCAGCCCTCACCCAGGAATACAGGGAGCGTATTATATACGTCTTTTTGGAAAGCTaGATCCTCATTAGTGACGTC | + |
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Preference number: 4 (lower is better) Translates to: SPVHGPALTQEYRERIIYVFLES*ILISDV Trigger: GACGTCACTAATGAGGATTCAGCTTTCCAAAAAGAC...GTATATAATACGCTCCCTGTATTCCTGGGTGAGGGCTGGACCATGGACTGGAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR CCA 90 bp | TCAGCTCTTGGCCTTCTGGGCTGGGTCCACACTAAACCCTATGGCTATACTGTCTCTTCCAGGTCTTTTTaGAAAGCTGAATCCTCATTA | + |
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Preference number: 4 (lower is better) Translates to: SALGLLGWVHTKPYGYTVSSRSF*KAESSL Trigger: TAATGAGGATTCAGCTTTCCAAAAAGACCTGGAAGA...GACAGTATAGCCATAGGGTTTAGTGTGGACCCAGCCCAGAAGGCCAAGAGCTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| 3UTR CAA 72 bp | CACTTTCAAAATAGATTCATAGACCCTTTGCCAGCGTaGTCATCCCAAAAGCTGCCAGGTCTCCAGTCCATG | + |
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Preference number: 4 (lower is better) Translates to: HFQNRFIDPLPA*SSQKLPGLQSM Trigger: CATGGACTGGAGACCTGGCAGCTTTTGGGATGACAACGCTGGCAAAGGGTCTATGAATCTATTTTGAAAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS TCA 90 bp | CAGCTCATCGGCCTGCAGCAGGACCAGCTGCACATCCTCTCGGCCTaGGGAGTCATCCTCCTCCAAGGCGGCCGCCGCCGGACTGGACGC | + |
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Preference number: 5 (lower is better) Translates to: QLIGLQQDQLHILSA*GVILLQGGRRRTGR Trigger: GCGTCCAGTCCGGCGGCGGCCGCCTTGGAGGAGGATGACTCCTCAGGCCGAGAGGATGTGCAGCTGGTCCTGCTGCAGGCCGATGAGCTG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS CCA 90 bp | CTCGGCCTGAGGAGTCATCCTCCTCCAAGGCGGCCGCCGCCGGACTaGACGCCGCCTCCACATCCAGGTCCAGAGAGTCCTTCCTCCCCA | + |
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Preference number: 5 (lower is better) Translates to: LGLRSHPPPRRPPPD*TPPPHPGPESPSSP Trigger: TGGGGAGGAAGGACTCTCTGGACCTGGATGTGGAGGCGGCGTCCAGTCCGGCGGCGGCCGCCTTGGAGGAGGATGACTCCTCAGGCCGAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS GCA 90 bp | GCCAGCTTATTGTTGAGCAGCAGCTGGAAGCCTTCCCGCTTGTCCTaGTTGCTGCCCTGGTGCAGCTCATCGGCCTGCAGCAGGACCAGC | + |
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Preference number: 5 (lower is better) Translates to: ASLLLSSSWKPSRLS*LLPWCSSSACSRTS Trigger: GCTGGTCCTGCTGCAGGCCGATGAGCTGCACCAGGGCAGCAAGCAGGACAAGCGGGAAGGCTTCCAGCTGCTGCTCAACAATAAGCTGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS TCA 90 bp | TGTTGTATAACCTCCCTCGCTCTCGGCGTCTGTGAGTGCAGCCCCTaGGGAGGCGGTGAAGTAGACAGAGCTGGAGCCCGTGGAGTCACT | + |
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Preference number: 5 (lower is better) Translates to: CCITSLALGVCECSP*GGGEVDRAGARGVT Trigger: AGTGACTCCACGGGCTCCAGCTCTGTCTACTTCACCGCCTCCTCAGGGGCTGCACTCACAGACGCCGAGAGCGAGGGAGGTTATACAACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS TCA 90 bp | AAGCCACTCTGGATGCGTTTCGAGATGCCCTCATGCTCAGCCAGCTaGCCACAGAGCACTGCATACCACAGGTGGCACGCAGCACTCTCA | + |
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Preference number: 5 (lower is better) Translates to: KPLWMRFEMPSCSAS*PQSTAYHRWHAALS Trigger: TGAGAGTGCTGCGTGCCACCTGTGGTATGCAGTGCTCTGTGGTCAGCTGGCTGAGCATGAGGGCATCTCGAAACGCATCCAGAGTGGCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS GCA 90 bp | ATAAGACTGGTCAGCACAAAGTCCAGGCGGTCCAGCACCTTCTCCTaGCCTTCCTGTGAGAGGCTGGGCAGTATGGCAGCATCTCCAGCT | + |
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Preference number: 5 (lower is better) Translates to: IRLVSTKSRRSSTFS*PSCERLGSMAASPA Trigger: AGCTGGAGATGCTGCCATACTGCCCAGCCTCTCACAGGAAGGGCAGGAGAAGGTGCTGGACCGCCTGGACTTTGTGCTGACCAGTCTTAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS CCA 90 bp | AAGTCTTGTCGGCTTCCATACGCCAGCTTATTGTTGAGCAGCAGCTaGAAGCCTTCCCGCTTGTCCTGCTTGCTGCCCTGGTGCAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: KSCRLPYASLLLSSS*KPSRLSCLLPWCSS Trigger: TGAGCTGCACCAGGGCAGCAAGCAGGACAAGCGGGAAGGCTTCCAGCTGCTGCTCAACAATAAGCTGGCGTATGGAAGCCGACAAGACTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR CAA 90 bp | ACCTCACTGGCAGCTGGAAGACAGTTCTGCTACTTCATTCTCAGCTCTTGGCCTTGGAAGCCTTCCCGCTaGTCCTGCTTGCTGCCCTGG | + |
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Preference number: 5 (lower is better) Translates to: TSLAAGRQFCYFILSSWPWKPSR*SCLLPW Trigger: CCAGGGCAGCAAGCAGGACAAGCGGGAAGGCTTCCA...AGGCCAAGAGCTGAGAATGAAGTAGCAGAACTGTCTTCCAGCTGCCAGTGAGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR CAA 90 bp | CCTTTGCCAGCGTTGTCATCCCAAAAGCTGCCAGGTCTCCAGTCCATGGTCCAGCCATACGCCAGCTTATaGTTGAGCAGCAGCTGGAAG | + |
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Preference number: 5 (lower is better) Translates to: PLPALSSQKLPGLQSMVQPYASL*LSSSWK Trigger: CTTCCAGCTGCTGCTCAACAATAAGCTGGCGTATGG...CTGGACCATGGACTGGAGACCTGGCAGCTTTTGGGATGACAACGCTGGCAAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS GCA 90 bp | CCTGGCTGTAGTTCCTCAGCCTTAAGGAAACTCTGCAGAGCGTCCTaGACAGTAGCACTAAGGGGGCTTTCAAACAAGGCGGTAGCCGTT | + |
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Preference number: 5 (lower is better) Translates to: PGCSSSALRKLCRAS*TVALRGLSNKAVAV Trigger: AACGGCTACCGCCTTGTTTGAAAGCCCCCTTAGTGCTACTGTGCAGGACGCTCTGCAGAGTTTCCTTAAGGCTGAGGAACTACAGCCAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR CAA 90 bp | TCTCCAGTCCATGGTCCAGCCCTCACCCAGGAATACAGGGAGCGTATTATATACGCGCCACAGAAAGTCTaGTCGGCTTCCATACGCCAG | + |
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Preference number: 5 (lower is better) Translates to: SPVHGPALTQEYRERIIYAPQKV*SASIRQ Trigger: CTGGCGTATGGAAGCCGACAAGACTTTCTGTGGCGC...GTATATAATACGCTCCCTGTATTCCTGGGTGAGGGCTGGACCATGGACTGGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR CAA 90 bp | GGTCCAGCCCTCACCCAGGAATACAGGGAGCGTATTATATACATGATGGGTGGTTACGCCAGCTTATTGTaGAGCAGCAGCTGGAAGCCT | + |
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Preference number: 5 (lower is better) Translates to: GPALTQEYRERIIYMMGGYASLL*SSSWKP Trigger: AGGCTTCCAGCTGCTGCTCAACAATAAGCTGGCGTA...ACCACCCATCATGTATATAATACGCTCCCTGTATTCCTGGGTGAGGGCTGGACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS CCA 90 bp | AGTGAGAAACCTGGTAGCACCACCTGCCAAGAAGAAAGTGACCCCTaGGGTCTTCTGGCTGAAGTTCAATGGCTTTGTCCACATGTTCCT | + |
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Preference number: 5 (lower is better) Translates to: SEKPGSTTCQEESDP*GLLAEVQWLCPHVP Trigger: AGGAACATGTGGACAAAGCCATTGAACTTCAGCCAGAAGACCCCAGGGGTCACTTTCTTCTTGGCAGGTGGTGCTACCAGGTTTCTCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR CAA 90 bp | CCACCTCACTGGCAGCTGGAAGACAGTTCTGCTACTTCATTCTCAGCTCTTGGCTTGTCCACATGTTCCTaGAAGCTAAAGCCACTCTGG | + |
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Preference number: 5 (lower is better) Translates to: PPHWQLEDSSATSFSALGLSTCS*KLKPLW Trigger: CCAGAGTGGCTTTAGCTTCAAGGAACATGTGGACAA...GCCAAGAGCTGAGAATGAAGTAGCAGAACTGTCTTCCAGCTGCCAGTGAGGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS-3UTR CAA 90 bp | ACCTCACTGGCAGCTGGAAGACAGTTCTGCTACTTCATTCTCAGCTCTTGGCCTATACCCGTCCAGCTTTaGAAAATCCTGGCTGTAGTT | + |
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Preference number: 5 (lower is better) Translates to: TSLAAGRQFCYFILSSWPIPVQL*KILAVV Trigger: AACTACAGCCAGGATTTTCAAAAGCTGGACGGGTAT...AGGCCAAGAGCTGAGAATGAAGTAGCAGAACTGTCTTCCAGCTGCCAGTGAGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS TCA 72 bp | ACCTCCCTCGCTCTCGGCGTCTGTGAGTGCAGCCCCTaGGGAGGCGGTGAAGTAGACAGAGCTGGAGCCCGT | + |
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Preference number: 6 (lower is better) Translates to: TSLALGVCECSP*GGGEVDRAGAR Trigger: ACGGGCTCCAGCTCTGTCTACTTCACCGCCTCCTCAGGGGCTGCACTCACAGACGCCGAGAGCGAGGGAGGT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS CCA 72 bp | GTCCACGCTCTGAAGCCTGCGCATAGTCCAGGGAGTTaGGCAGACTGTGACTCCGGCCATGGCGCTGGGTCC | + |
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Preference number: 6 (lower is better) Translates to: VHALKPAHSPGS*ADCDSGHGAGS Trigger: GGACCCAGCGCCATGGCCGGAGTCACAGTCTGCCCAACTCCCTGGACTATGCGCAGGCTTCAGAGCGTGGAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000094695.12 ENSMUST00000129351.2 ENSMUST00000135419.8 ENSMUST00000139519.2 |
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| CDS CCA 72 bp | AGCTGGAAGCCTTCCCGCTTGTCCTGCTTGCTGCCCTaGTGCAGCTCATCGGCCTGCAGCAGGACCAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: SWKPSRLSCLLP*CSSSACSRTSC Trigger: GCAGCTGGTCCTGCTGCAGGCCGATGAGCTGCACCAGGGCAGCAAGCAGGACAAGCGGGAAGGCTTCCAGCT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS GCA 72 bp | TTGTCCTGCTTGCTGCCCTGGTGCAGCTCATCGGCCTaGAGCAGGACCAGCTGCACATCCTCTCGGCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: LSCLLPWCSSSA*SRTSCTSSRPE Trigger: CTCAGGCCGAGAGGATGTGCAGCTGGTCCTGCTGCAGGCCGATGAGCTGCACCAGGGCAGCAAGCAGGACAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS GCA 72 bp | TGGAAGCCTTCCCGCTTGTCCTGCTTGCTGCCCTGGTaGAGCTCATCGGCCTGCAGCAGGACCAGCTGCACA | + |
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Preference number: 6 (lower is better) Translates to: WKPSRLSCLLPW*SSSACSRTSCT Trigger: TGTGCAGCTGGTCCTGCTGCAGGCCGATGAGCTGCACCAGGGCAGCAAGCAGGACAAGCGGGAAGGCTTCCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS GCA 72 bp | TTGTTGAGCAGCAGCTGGAAGCCTTCCCGCTTGTCCTaGTTGCTGCCCTGGTGCAGCTCATCGGCCTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: LLSSSWKPSRLS*LLPWCSSSACS Trigger: GCTGCAGGCCGATGAGCTGCACCAGGGCAGCAAGCAGGACAAGCGGGAAGGCTTCCAGCTGCTGCTCAACAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS CAA 90 bp | AGCTTATTGTTGAGCAGCAGCTGGAAGCCTTCCCGCTTGTCCTGCTaGCTGCCCTGGTGCAGCTCATCGGCCTGCAGCAGGACCAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: SLLLSSSWKPSRLSC*LPWCSSSACSRTSC Trigger: GCAGCTGGTCCTGCTGCAGGCCGATGAGCTGCACCAGGGCAGCAAGCAGGACAAGCGGGAAGGCTTCCAGCTGCTGCTCAACAATAAGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS CAA 90 bp | CCATACGCCAGCTTATTGTTGAGCAGCAGCTGGAAGCCTTCCCGCTaGTCCTGCTTGCTGCCCTGGTGCAGCTCATCGGCCTGCAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: PYASLLLSSSWKPSR*SCLLPWCSSSACSR Trigger: CCTGCTGCAGGCCGATGAGCTGCACCAGGGCAGCAAGCAGGACAAGCGGGAAGGCTTCCAGCTGCTGCTCAACAATAAGCTGGCGTATGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS GCA 72 bp | GTCAGCACAAAGTCCAGGCGGTCCAGCACCTTCTCCTaGCCTTCCTGTGAGAGGCTGGGCAGTATGGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: VSTKSRRSSTFS*PSCERLGSMAA Trigger: TGCTGCCATACTGCCCAGCCTCTCACAGGAAGGGCAGGAGAAGGTGCTGGACCGCCTGGACTTTGTGCTGAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS CCA 72 bp | GAGGCTGGGCAGTATGGCAGCATCTCCAGCTTCACCTaGGATAGCCCGAAACTGTGTCACCTGGCGTCCACG | + |
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Preference number: 6 (lower is better) Translates to: EAGQYGSISSFT*DSPKLCHLAST Trigger: CGTGGACGCCAGGTGACACAGTTTCGGGCTATCCCAGGTGAAGCTGGAGATGCTGCCATACTGCCCAGCCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094695.12 ENSMUST00000135419.8 |
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| CDS TCA 72 bp | ATAGGACTTCTTCCCGCTCTCCTCCTCAGTAAGGTCTaGCATGTCACTGTAGGCCCGGGCCAGGCGCCACAG | + |
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Preference number: 6 (lower is better) Translates to: IGLLPALLLSKV*HVTVGPGQAPQ Trigger: CTGTGGCGCCTGGCCCGGGCCTACAGTGACATGTCAGACCTTACTGAGGAGGAGAGCGGGAAGAAGTCCTAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS CCA 72 bp | CCTTGTCGGAGTCCCGCTCGTAATCAGACTCCGCGTTaGCTGTTGTATAACCTCCCTCGCTCTCGGCGTCTG | + |
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Preference number: 6 (lower is better) Translates to: PCRSPARNQTPR*LLYNLPRSRRL Trigger: CAGACGCCGAGAGCGAGGGAGGTTATACAACAGCCAACGCGGAGTCTGATTACGAGCGGGACTCCGACAAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS CCA 72 bp | CGGCTTCCATACGCCAGCTTATTGTTGAGCAGCAGCTaGAAGCCTTCCCGCTTGTCCTGCTTGCTGCCCTGG | + |
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Preference number: 6 (lower is better) Translates to: RLPYASLLLSSS*KPSRLSCLLPW Trigger: CCAGGGCAGCAAGCAGGACAAGCGGGAAGGCTTCCAGCTGCTGCTCAACAATAAGCTGGCGTATGGAAGCCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS CAA 72 bp | GTCACTGTAGGCCCGGGCCAGGCGCCACAGAAAGTCTaGTCGGCTTCCATACGCCAGCTTATTGTTGAGCAG | + |
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Preference number: 6 (lower is better) Translates to: VTVGPGQAPQKV*SASIRQLIVEQ Trigger: CTGCTCAACAATAAGCTGGCGTATGGAAGCCGACAAGACTTTCTGTGGCGCCTGGCCCGGGCCTACAGTGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS TCA 72 bp | GAAAGTCTTGTCGGCTTCCATACGCCAGCTTATTGTTaGGCAGCAGCTGGAAGCCTTCCCGCTTGTCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: ESLVGFHTPAYC*AAAGSLPACPA Trigger: AGCAGGACAAGCGGGAAGGCTTCCAGCTGCTGCTCAACAATAAGCTGGCGTATGGAAGCCGACAAGACTTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS CAA 72 bp | AGAAAGTCTTGTCGGCTTCCATACGCCAGCTTATTGTaGAGCAGCAGCTGGAAGCCTTCCCGCTTGTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: RKSCRLPYASLL*SSSWKPSRLSC Trigger: GCAGGACAAGCGGGAAGGCTTCCAGCTGCTGCTCAACAATAAGCTGGCGTATGGAAGCCGACAAGACTTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS CAA 72 bp | CACAGAAAGTCTTGTCGGCTTCCATACGCCAGCTTATaGTTGAGCAGCAGCTGGAAGCCTTCCCGCTTGTCC | + |
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Preference number: 6 (lower is better) Translates to: HRKSCRLPYASL*LSSSWKPSRLS Trigger: GGACAAGCGGGAAGGCTTCCAGCTGCTGCTCAACAATAAGCTGGCGTATGGAAGCCGACAAGACTTTCTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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| CDS GCA 72 bp | AATCCTGGCTGTAGTTCCTCAGCCTTAAGGAAACTCTaGAGAGCGTCCTGCACAGTAGCACTAAGGGGGCTT | + |
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Preference number: 6 (lower is better) Translates to: NPGCSSSALRKL*RASCTVALRGL Trigger: AAGCCCCCTTAGTGCTACTGTGCAGGACGCTCTGCAGAGTTTCCTTAAGGCTGAGGAACTACAGCCAGGATT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094695.12 |
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