Pregenerated sensors for RMDN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028229Ensembl transcript IDs: ENSMUST00000029888.4, ENSMUST00000108253.8
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CAGGTCTTTATGCAAGGAGCCCTCAGCATCATAAAGGCCTGGCTCCTCTCAGTCGAAAACGGTTCATCCTaGAGTGATCAATACTTACAT | + |
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Preference number: 2 (lower is better) Translates to: QVFMQGALSIIKAWLLSVENGSS*SDQYLH Trigger: ATGTAAGTATTGATCACTTCAGGATGAACCGTTTTC...GACTGAGAGGAGCCAGGCCTTTATGATGCTGAGGGCTCCTTGCATAAAGACCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| 3UTR CAA 90 bp | TTATCTCTTGGTGTTCCAAATGTCTGTCTGAACCAGGGGGATGTATaGCTGCCACTCTTAGGGTACACTGTGGCAGTTTCTTATTTACTT | + |
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Preference number: 2 (lower is better) Translates to: LSLGVPNVCLNQGDV*LPLLGYTVAVSYLL Trigger: AAGTAAATAAGAAACTGCCACAGTGTACCCTAAGAGTGGCAGCAATACATCCCCCTGGTTCAGACAGACATTTGGAACACCAAGAGATAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| 3UTR-3UTR CCA 90 bp | TCAAGGTTTAGTACTCTGCCTGGTAAATGTCTATTTCCTTTAACCCTGAAATGTACCATTTTTATCTCTTaGTGTTCCAAATGTCTGTCT | + |
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Preference number: 2 (lower is better) Translates to: SRFSTLPGKCLFPLTLKCTIFIS*CSKCLS Trigger: AGACAGACATTTGGAACACCAAGAGATAAAAATGGT...ACATTTCAGGGTTAAAGGAAATAGACATTTACCAGGCAGAGTACTAAACCTTGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| 3UTR-3UTR CAA 90 bp | AAATTCAACCCATCTATGGAGGTATACCACATTTTTAAAAGGGTGTTCACAGAATGCTCACAAAGCCTTTaGAAAACGGTTCATCCTGAA | + |
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Preference number: 3 (lower is better) Translates to: KFNPSMEVYHIFKRVFTECSQSL*KTVHPE Trigger: TTCAGGATGAACCGTTTTCAAAAGGCTTTGTGAGCA...TTCTGTGAACACCCTTTTAAAAATGTGGTATACCTCCATAGATGGGTTGAATTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| 3UTR-3UTR CAA 90 bp | AAATTCAACCCATCTATGGAGGTATACCACATTTTTAAAAGGGTGTTCACAGAATACCATTTTTATCTCTaGGTGTTCCAAATGTCTGTC | + |
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Preference number: 3 (lower is better) Translates to: KFNPSMEVYHIFKRVFTEYHFYL*VFQMSV Trigger: GACAGACATTTGGAACACCAAGAGATAAAAATGGTA...TTCTGTGAACACCCTTTTAAAAATGTGGTATACCTCCATAGATGGGTTGAATTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS-3UTR CCA 90 bp | CAGGTCTTTATGCAAGGAGCCCTCAGCATCATAAAGGCCTGGCTCCTCTCAGTCCTTCAACTTTGGCTGTaGCATGAACCACAGCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: QVFMQGALSIIKAWLLSVLQLWL*HEPQQP Trigger: AGGCTGCTGTGGTTCATGCCACAGCCAAAGTTGAAG...GACTGAGAGGAGCCAGGCCTTTATGATGCTGAGGGCTCCTTGCATAAAGACCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS-3UTR CCA 90 bp | AGAGGCAGGCGGATTTCTGAGTTCGGGGCCAGCCTGGTCTACAGAGTGAGTTCCGTATTTCTTCAACTTTaGCTGTGGCATGAACCACAG | + |
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Preference number: 4 (lower is better) Translates to: RGRRISEFGASLVYRVSSVFLQL*LWHEPQ Trigger: CTGTGGTTCATGCCACAGCCAAAGTTGAAGAAATAC...GGAACTCACTCTGTAGACCAGGCTGGCCCCGAACTCAGAAATCCGCCTGCCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108253.8 |
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| CDS-3UTR TCA 90 bp | AGAGGCAGGCGGATTTCTGAGTTCGGGGCCAGCCTGGTCTACAGAGTGAGTTCCCAGCAGCCTGAGAAATaGTTTGATAGGTTTCAAAAC | + |
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Preference number: 4 (lower is better) Translates to: RGRRISEFGASLVYRVSSQQPEK*FDRFQN Trigger: GTTTTGAAACCTATCAAATCATTTCTCAGGCTGCTG...GGAACTCACTCTGTAGACCAGGCTGGCCCCGAACTCAGAAATCCGCCTGCCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108253.8 |
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| CDS-3UTR GCA 90 bp | AGAGGCAGGCGGATTTCTGAGTTCGGGGCCAGCCTGGTCTACAGAGTGAGTTCCTTCATAGAGGTAGTCTaGTTGCGCAAGTATTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: RGRRISEFGASLVYRVSSFIEVV*LRKYFF Trigger: GAAGAAATACTTGCGCAAGCAGACTACCTCTATGAA...GGAACTCACTCTGTAGACCAGGCTGGCCCCGAACTCAGAAATCCGCCTGCCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108253.8 |
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| 3UTR CAA 72 bp | GGTGTTCCAAATGTCTGTCTGAACCAGGGGGATGTATaGCTGCCACTCTTAGGGTACACTGTGGCAGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: GVPNVCLNQGDV*LPLLGYTVAVS Trigger: AGAAACTGCCACAGTGTACCCTAAGAGTGGCAGCAATACATCCCCCTGGTTCAGACAGACATTTGGAACACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS-3UTR GCA 90 bp | CAGGTCTTTATGCAAGGAGCCCTCAGCATCATAAAGGCCTGGCTCCTCTCAGTCATCTTCTTCTGTGTGTaGTGGATAACCCTTGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: QVFMQGALSIIKAWLLSVIFFCV*WITLGF Trigger: AAAGCCAAGGGTTATCCAGCACACACAGAAGAAGAT...GACTGAGAGGAGCCAGGCCTTTATGATGCTGAGGGCTCCTTGCATAAAGACCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS-3UTR CCA 90 bp | TTTATGCAAGGAGCCCTCAGCATCATAAAGGCCTGGCTCCTCTCAGTCAGCAACTTCTTCTGTGTGTGCTaGATAACCCTTGGCTTTTAC | + |
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Preference number: 4 (lower is better) Translates to: FMQGALSIIKAWLLSVSNFFCVC*ITLGFY Trigger: GTAAAAGCCAAGGGTTATCCAGCACACACAGAAGAA...GTTGCTGACTGAGAGGAGCCAGGCCTTTATGATGCTGAGGGCTCCTTGCATAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS-3UTR GCA 90 bp | TTTATGCAAGGAGCCCTCAGCATCATAAAGGCCTGGCTCCTCTCAGTCAGCAACTTCATAGAGGTAGTCTaGTTGCGCAAGTATTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: FMQGALSIIKAWLLSVSNFIEVV*LRKYFF Trigger: GAAGAAATACTTGCGCAAGCAGACTACCTCTATGAA...GTTGCTGACTGAGAGGAGCCAGGCCTTTATGATGCTGAGGGCTCCTTGCATAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS-3UTR GCA 90 bp | CAGGTCTTTATGCAAGGAGCCCTCAGCATCATAAAGGCCTGGCTCCTCTCAGTCAAAGCAGCAAGTTTTTaGTGTAGAAGTTTGGATCCA | + |
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Preference number: 4 (lower is better) Translates to: QVFMQGALSIIKAWLLSVKAASF*CRSLDP Trigger: TGGATCCAAACTTCTACAGCAAAAACTTGCTGCTTT...GACTGAGAGGAGCCAGGCCTTTATGATGCTGAGGGCTCCTTGCATAAAGACCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS-3UTR TCA 90 bp | TTTATGCAAGGAGCCCTCAGCATCATAAAGGCCTGGCTCCTCTCAGTCAGCAACTTAGCAATTCTTCTTTaGTACCAAGGCATTTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: FMQGALSIIKAWLLSVSNLAILL*YQGISA Trigger: TGCTGAAATGCCTTGGTATCAAAGAAGAATTGCTAA...GTTGCTGACTGAGAGGAGCCAGGCCTTTATGATGCTGAGGGCTCCTTGCATAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS-3UTR CCA 90 bp | TGTTCCAAATGTCTGTCTGAACCAGGGGGATGTATTGCTGCCACTCTTAGGGTAGTATTTCTTCAACTTTaGCTGTGGCATGAACCACAG | + |
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Preference number: 4 (lower is better) Translates to: CSKCLSEPGGCIAATLRVVFLQL*LWHEPQ Trigger: CTGTGGTTCATGCCACAGCCAAAGTTGAAGAAATAC...TACCCTAAGAGTGGCAGCAATACATCCCCCTGGTTCAGACAGACATTTGGAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS-3UTR CCA 90 bp | TTTATGCAAGGAGCCCTCAGCATCATAAAGGCCTGGCTCCTCTCAGTCAGCAACTTTGCTGTAGAAGTTTaGATCCACTTCTTCTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: FMQGALSIIKAWLLSVSNFAVEV*IHFFCF Trigger: AAAGCAGAAGAAGTGGATCCAAACTTCTACAGCAAA...GTTGCTGACTGAGAGGAGCCAGGCCTTTATGATGCTGAGGGCTCCTTGCATAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS-3UTR TCA 90 bp | TGTTCCAAATGTCTGTCTGAACCAGGGGGATGTATTGCTGCCACTCTTAGGGTAACCCATAAGGTGAATTaGAGTAGCATCTTTAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: CSKCLSEPGGCIAATLRVTHKVN*SSIFRV Trigger: AACCCTAAAGATGCTACTTCAATTCACCTTATGGGT...TACCCTAAGAGTGGCAGCAATACATCCCCCTGGTTCAGACAGACATTTGGAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS-3UTR GCA 90 bp | TGTTCCAAATGTCTGTCTGAACCAGGGGGATGTATTGCTGCCACTCTTAGGGTAATCACTAATGCAGATTaGATACCACTTATGAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: CSKCLSEPGGCIAATLRVITNAD*IPLMSS Trigger: GCTGCTCATAAGTGGTATGCAATCTGCATTAGTGAT...TACCCTAAGAGTGGCAGCAATACATCCCCCTGGTTCAGACAGACATTTGGAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS-3UTR GCA 90 bp | TGTTCCAAATGTCTGTCTGAACCAGGGGGATGTATTGCTGCCACTCTTAGGGTAAGGGTTCAGCTCAATTaGTTTCTCAAAATGCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: CSKCLSEPGGCIAATLRVRVQLN*FLKMLL Trigger: AAGGAGCATTTTGAGAAAGCAATTGAGCTGAACCCT...TACCCTAAGAGTGGCAGCAATACATCCCCCTGGTTCAGACAGACATTTGGAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS-3UTR CCA 90 bp | AATGAAGTACAGTTTTTAGGTTTCTTTAAGATGAAAAGAAAGGAGCCGGGTGTGCTTCAACTTTGGCTGTaGCATGAACCACAGCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: NEVQFLGFFKMKRKEPGVLQLWL*HEPQQP Trigger: AGGCTGCTGTGGTTCATGCCACAGCCAAAGTTGAAG...CACACCCGGCTCCTTTCTTTTCATCTTAAAGAAACCTAAAAACTGTACTTCATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108253.8 |
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| CDS-3UTR CCA 90 bp | TCAAGGTTTAGTACTCTGCCTGGTAAATGTCTATTTCCTTTAACCCTGAAATGTGTGCTGGATAACCCTTaGCTTTTACCAACCAGAACG | + |
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Preference number: 4 (lower is better) Translates to: SRFSTLPGKCLFPLTLKCVLDNP*LLPTRT Trigger: CGTTCTGGTTGGTAAAAGCCAAGGGTTATCCAGCAC...ACATTTCAGGGTTAAAGGAAATAGACATTTACCAGGCAGAGTACTAAACCTTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS-3UTR GCA 90 bp | AATGAAGTACAGTTTTTAGGTTTCTTTAAGATGAAAAGAAAGGAGCCGGGTGTGATCACTAATGCAGATTaGATACCACTTATGAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: NEVQFLGFFKMKRKEPGVITNAD*IPLMSS Trigger: GCTGCTCATAAGTGGTATGCAATCTGCATTAGTGAT...CACACCCGGCTCCTTTCTTTTCATCTTAAAGAAACCTAAAAACTGTACTTCATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108253.8 |
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| CDS-3UTR GCA 90 bp | TCAAGGTTTAGTACTCTGCCTGGTAAATGTCTATTTCCTTTAACCCTGAAATGTGGAACTAGGAGGATTTaGAAACAGCACTTTAGCAAT | + |
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Preference number: 4 (lower is better) Translates to: SRFSTLPGKCLFPLTLKCGTRRI*KQHFSN Trigger: ATTGCTAAAGTGCTGTTTGCAAATCCTCCTAGTTCC...ACATTTCAGGGTTAAAGGAAATAGACATTTACCAGGCAGAGTACTAAACCTTGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS-3UTR TCA 90 bp | AAATTCAACCCATCTATGGAGGTATACCACATTTTTAAAAGGGTGTTCACAGAACAGCAGCCTGAGAAATaGTTTGATAGGTTTCAAAAC | + |
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Preference number: 4 (lower is better) Translates to: KFNPSMEVYHIFKRVFTEQQPEK*FDRFQN Trigger: GTTTTGAAACCTATCAAATCATTTCTCAGGCTGCTG...TTCTGTGAACACCCTTTTAAAAATGTGGTATACCTCCATAGATGGGTTGAATTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS-3UTR CAA 90 bp | AGAGGCAGGCGGATTTCTGAGTTCGGGGCCAGCCTGGTCTACAGAGTGAGTTCCATAGAGGTAGTCTGCTaGCGCAAGTATTTCTTCAAC | + |
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Preference number: 5 (lower is better) Translates to: RGRRISEFGASLVYRVSSIEVVC*RKYFFN Trigger: GTTGAAGAAATACTTGCGCAAGCAGACTACCTCTAT...GGAACTCACTCTGTAGACCAGGCTGGCCCCGAACTCAGAAATCCGCCTGCCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108253.8 |
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| CDS-3UTR CAA 90 bp | CAGGTCTTTATGCAAGGAGCCCTCAGCATCATAAAGGCCTGGCTCCTCTCAGTCTATGAGCAGCAGAGCTaGACTCCTTTTTCTCTAGTG | + |
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Preference number: 5 (lower is better) Translates to: QVFMQGALSIIKAWLLSVYEQQS*TPFSLV Trigger: CACTAGAGAAAAAGGAGTCAAGCTCTGCTGCTCATA...GACTGAGAGGAGCCAGGCCTTTATGATGCTGAGGGCTCCTTGCATAAAGACCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS-3UTR CAA 90 bp | TTTATGCAAGGAGCCCTCAGCATCATAAAGGCCTGGCTCCTCTCAGTCAGCAACATAGAGGTAGTCTGCTaGCGCAAGTATTTCTTCAAC | + |
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Preference number: 5 (lower is better) Translates to: FMQGALSIIKAWLLSVSNIEVVC*RKYFFN Trigger: GTTGAAGAAATACTTGCGCAAGCAGACTACCTCTAT...GTTGCTGACTGAGAGGAGCCAGGCCTTTATGATGCTGAGGGCTCCTTGCATAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS-3UTR CAA 90 bp | TTTATGCAAGGAGCCCTCAGCATCATAAAGGCCTGGCTCCTCTCAGTCAGCAACAGCCTGAGAAATGATTaGATAGGTTTCAAAACCCAA | + |
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Preference number: 5 (lower is better) Translates to: FMQGALSIIKAWLLSVSNSLRND*IGFKTQ Trigger: TTGGGTTTTGAAACCTATCAAATCATTTCTCAGGCT...GTTGCTGACTGAGAGGAGCCAGGCCTTTATGATGCTGAGGGCTCCTTGCATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS TCA 90 bp | TTTCTTCAACTTTGGCTGTGGCATGAACCACAGCAGCCTGAGAAATaGTTTGATAGGTTTCAAAACCCAAATAAGACAAGGCTGAGAATA | + |
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Preference number: 5 (lower is better) Translates to: FLQLWLWHEPQQPEK*FDRFQNPNKTRLRI Trigger: TATTCTCAGCCTTGTCTTATTTGGGTTTTGAAACCTATCAAATCATTTCTCAGGCTGCTGTGGTTCATGCCACAGCCAAAGTTGAAGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029888.4 ENSMUST00000108253.8 |
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| CDS GCA 90 bp | TGTTGTTTAGCTTCAAGTATGTCTTTCCTAAAAGCAGCAAGTTTTTaGTGTAGAAGTTTGGATCCACTTCTTCTGCTTTGTGAAAGTATC | + |
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Preference number: 5 (lower is better) Translates to: CCLASSMSFLKAASF*CRSLDPLLLLCESI Trigger: GATACTTTCACAAAGCAGAAGAAGTGGATCCAAACTTCTACAGCAAAAACTTGCTGCTTTTAGGAAAGACATACTTGAAGCTAAACAACA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS-3UTR CAA 90 bp | AATGAAGTACAGTTTTTAGGTTTCTTTAAGATGAAAAGAAAGGAGCCGGGTGTGAGCCTGAGAAATGATTaGATAGGTTTCAAAACCCAA | + |
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Preference number: 5 (lower is better) Translates to: NEVQFLGFFKMKRKEPGVSLRND*IGFKTQ Trigger: TTGGGTTTTGAAACCTATCAAATCATTTCTCAGGCT...CACACCCGGCTCCTTTCTTTTCATCTTAAAGAAACCTAAAAACTGTACTTCATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000108253.8 |
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| CDS-3UTR CAA 90 bp | AAATTCAACCCATCTATGGAGGTATACCACATTTTTAAAAGGGTGTTCACAGAATTTTGCTGTAGAAGTTaGGATCCACTTCTTCTGCTT | + |
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Preference number: 5 (lower is better) Translates to: KFNPSMEVYHIFKRVFTEFCCRS*DPLLLL Trigger: AAGCAGAAGAAGTGGATCCAAACTTCTACAGCAAAA...TTCTGTGAACACCCTTTTAAAAATGTGGTATACCTCCATAGATGGGTTGAATTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS GCA 72 bp | AAGCGCGGACTCCCCAGGCGCCACAGCGCCCACGGCTaGCCCAGGTCCTCGTCTGCTGACAGACGCGGAGTG | + |
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Preference number: 6 (lower is better) Translates to: KRGLPRRHSAHG*PRSSSADRRGV Trigger: CACTCCGCGTCTGTCAGCAGACGAGGACCTGGGGCAGCCGTGGGCGCTGTGGCGCCTGGGGAGTCCGCGCTT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029888.4 ENSMUST00000108253.8 |
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| CDS TCA 72 bp | CTTTGGCTGTGGCATGAACCACAGCAGCCTGAGAAATaGTTTGATAGGTTTCAAAACCCAAATAAGACAAGG | + |
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Preference number: 6 (lower is better) Translates to: LWLWHEPQQPEK*FDRFQNPNKTR Trigger: CCTTGTCTTATTTGGGTTTTGAAACCTATCAAATCATTTCTCAGGCTGCTGTGGTTCATGCCACAGCCAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029888.4 ENSMUST00000108253.8 |
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| CDS TCA 72 bp | TCTCCAACATCACTAATGCAGATTGCATACCACTTATaGGCAGCAGAGCTTGACTCCTTTTTCTCTAGTGCT | + |
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Preference number: 6 (lower is better) Translates to: SPTSLMQIAYHL*AAELDSFFSSA Trigger: AGCACTAGAGAAAAAGGAGTCAAGCTCTGCTGCTCATAAGTGGTATGCAATCTGCATTAGTGATGTTGGAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029888.4 ENSMUST00000108253.8 |
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| CDS GCA 72 bp | AAGCTTTTCTGTTTCTCCACTTTCATAGAGGTAGTCTaGTTGCGCAAGTATTTCTTCAACTTTGGCTGTGGC | + |
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Preference number: 6 (lower is better) Translates to: KLFCFSTFIEVV*LRKYFFNFGCG Trigger: GCCACAGCCAAAGTTGAAGAAATACTTGCGCAAGCAGACTACCTCTATGAAAGTGGAGAAACAGAAAAGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029888.4 ENSMUST00000108253.8 |
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| CDS CAA 72 bp | CTTTTCTGTTTCTCCACTTTCATAGAGGTAGTCTGCTaGCGCAAGTATTTCTTCAACTTTGGCTGTGGCATG | + |
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Preference number: 6 (lower is better) Translates to: LFCFSTFIEVVC*RKYFFNFGCGM Trigger: CATGCCACAGCCAAAGTTGAAGAAATACTTGCGCAAGCAGACTACCTCTATGAAAGTGGAGAAACAGAAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029888.4 ENSMUST00000108253.8 |
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| CDS CAA 90 bp | TCAAGTATGTCTTTCCTAAAAGCAGCAAGTTTTTGCTGTAGAAGTTaGGATCCACTTCTTCTGCTTTGTGAAAGTATCTTAAGGCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: SSMSFLKAASFCCRS*DPLLLLCESILRPP Trigger: AGGAGGCCTTAAGATACTTTCACAAAGCAGAAGAAGTGGATCCAAACTTCTACAGCAAAAACTTGCTGCTTTTAGGAAAGACATACTTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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| CDS CAA 72 bp | TCTTTCCTAAAAGCAGCAAGTTTTTGCTGTAGAAGTTaGGATCCACTTCTTCTGCTTTGTGAAAGTATCTTA | + |
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Preference number: 6 (lower is better) Translates to: SFLKAASFCCRS*DPLLLLCESIL Trigger: TAAGATACTTTCACAAAGCAGAAGAAGTGGATCCAAACTTCTACAGCAAAAACTTGCTGCTTTTAGGAAAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029888.4 |
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