Pregenerated sensors for RLN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045232Ensembl transcript IDs: ENSMUST00000061923.5
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CTTGAACATCGCACAGCTGACAGCAGCTTGCAGGCACGGCCCGCTTCTCCATTGCCGAACCACTCCAGGTaGCCCTTGCCAGCTGGCTCG | + |
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Preference number: 4 (lower is better) Translates to: LEHRTADSSLQARPASPLPNHSR*PLPAGS Trigger: CGAGCCAGCTGGCAAGGGTCACCTGGAGTGGTTCGG...CAATGGAGAAGCGGGCCGTGCCTGCAAGCTGCTGTCAGCTGTGCGATGTTCAAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061923.5 |
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| CDS-3UTR CCA 90 bp | CCTGTAGGAATGCTCTTGAACATCGCACAGCTGACAGCAGCTTGCAGGCACGGCGGGCCAGCCACTCGCTaGAGCCCACCGCTTCATCCA | + |
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Preference number: 4 (lower is better) Translates to: PVGMLLNIAQLTAACRHGGPATR*SPPLHP Trigger: TGGATGAAGCGGTGGGCTCCAGCGAGTGGCTGGCCC...GCCGTGCCTGCAAGCTGCTGTCAGCTGTGCGATGTTCAAGAGCATTCCTACAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061923.5 |
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| CDS-3UTR GCA 90 bp | CCTGTAGGAATGCTCTTGAACATCGCACAGCTGACAGCAGCTTGCAGGCACGGCCCCACTCGCAGCAACTaGTGGAAAGGCCAGCCAACA | + |
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Preference number: 4 (lower is better) Translates to: PVGMLLNIAQLTAACRHGPTRSN*WKGQPT Trigger: TGTTGGCTGGCCTTTCCAGCAGTTGCTGCGAGTGGG...GCCGTGCCTGCAAGCTGCTGTCAGCTGTGCGATGTTCAAGAGCATTCCTACAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061923.5 |
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| 3UTR CAA 72 bp | AGTGGACCCCTTGGTGCCTCGCCTGTAGGAATGCTCTaGAACATCGCACAGCTGACAGCAGCTTGCAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: SGPLGASPVGML*NIAQLTAACRH Trigger: GTGCCTGCAAGCTGCTGTCAGCTGTGCGATGTTCAAGAGCATTCCTACAGGCGAGGCACCAAGGGGTCCACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061923.5 |
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| 3UTR CAA 72 bp | AGGAATGCTCTTGAACATCGCACAGCTGACAGCAGCTaGCAGGCACGGCCCGCTTCTCCATTGCTCAACCCT | + |
|
Preference number: 4 (lower is better) Translates to: RNALEHRTADSS*QARPASPLLNP Trigger: AGGGTTGAGCAATGGAGAAGCGGGCCGTGCCTGCAAGCTGCTGTCAGCTGTGCGATGTTCAAGAGCATTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061923.5 |
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| CDS-3UTR CCA 90 bp | CTTGAACATCGCACAGCTGACAGCAGCTTGCAGGCACGGCCCGCTTCTCCATTGCACAAGCTGCTAATTTaGCTCTTGCTACAGCCCCAC | + |
|
Preference number: 4 (lower is better) Translates to: LEHRTADSSLQARPASPLHKLLI*LLLQPH Trigger: GTGGGGCTGTAGCAAGAGCCAAATTAGCAGCTTGTG...CAATGGAGAAGCGGGCCGTGCCTGCAAGCTGCTGTCAGCTGTGCGATGTTCAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061923.5 |
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| CDS TCA 90 bp | GTCCCCCAGAGATTCGTGGGCCAAGATGTCCGCCCGGCGCCATCGTaGGCCTCCGCAAGTGAAGATGACCGCGCGGATGAACTCCCGACC | + |
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Preference number: 5 (lower is better) Translates to: VPQRFVGQDVRPAPS*ASASEDDRADELPT Trigger: GGTCGGGAGTTCATCCGCGCGGTCATCTTCACTTGCGGAGGCTCACGATGGCGCCGGGCGGACATCTTGGCCCACGAATCTCTGGGGGAC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061923.5 |
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| CDS CCA 90 bp | TTAGGGCCAGCCACTCGCTGGAGCCCACCGCTTCATCCAGCTCGCTaGCCAGGTGGTCTGTATTGGCTTCTCCATCAGCGAAGAAGTCCC | + |
|
Preference number: 5 (lower is better) Translates to: LGPATRWSPPLHPAR*PGGLYWLLHQRRSP Trigger: GGGACTTCTTCGCTGATGGAGAAGCCAATACAGACCACCTGGCCAGCGAGCTGGATGAAGCGGTGGGCTCCAGCGAGTGGCTGGCCCTAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061923.5 |
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| CDS CCA 90 bp | TGGAGCCCACCGCTTCATCCAGCTCGCTGGCCAGGTGGTCTGTATTaGCTTCTCCATCAGCGAAGAAGTCCCCCAGAGATTCGTGGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: WSPPLHPARWPGGLY*LLHQRRSPPEIRGP Trigger: TGGCCCACGAATCTCTGGGGGACTTCTTCGCTGATGGAGAAGCCAATACAGACCACCTGGCCAGCGAGCTGGATGAAGCGGTGGGCTCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061923.5 |
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| CDS CCA 90 bp | AGCCACTCGCTGGAGCCCACCGCTTCATCCAGCTCGCTGGCCAGGTaGTCTGTATTGGCTTCTCCATCAGCGAAGAAGTCCCCCAGAGAT | + |
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Preference number: 5 (lower is better) Translates to: SHSLEPTASSSSLAR*SVLASPSAKKSPRD Trigger: ATCTCTGGGGGACTTCTTCGCTGATGGAGAAGCCAATACAGACCACCTGGCCAGCGAGCTGGATGAAGCGGTGGGCTCCAGCGAGTGGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061923.5 |
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| CDS TCA 72 bp | AGATTCGTGGGCCAAGATGTCCGCCCGGCGCCATCGTaGGCCTCCGCAAGTGAAGATGACCGCGCGGATGAA | + |
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Preference number: 6 (lower is better) Translates to: RFVGQDVRPAPS*ASASEDDRADE Trigger: TTCATCCGCGCGGTCATCTTCACTTGCGGAGGCTCACGATGGCGCCGGGCGGACATCTTGGCCCACGAATCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061923.5 |
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| CDS CCA 72 bp | GCCACTCGCTGGAGCCCACCGCTTCATCCAGCTCGCTaGCCAGGTGGTCTGTATTGGCTTCTCCATCAGCGA | + |
|
Preference number: 6 (lower is better) Translates to: ATRWSPPLHPAR*PGGLYWLLHQR Trigger: TCGCTGATGGAGAAGCCAATACAGACCACCTGGCCAGCGAGCTGGATGAAGCGGTGGGCTCCAGCGAGTGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061923.5 |
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| CDS CAA 90 bp | CTGGAGCCCACCGCTTCATCCAGCTCGCTGGCCAGGTGGTCTGTATaGGCTTCTCCATCAGCGAAGAAGTCCCCCAGAGATTCGTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: LEPTASSSSLARWSV*ASPSAKKSPRDSWA Trigger: GGCCCACGAATCTCTGGGGGACTTCTTCGCTGATGGAGAAGCCAATACAGACCACCTGGCCAGCGAGCTGGATGAAGCGGTGGGCTCCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061923.5 |
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| CDS CCA 72 bp | CCGCTTCATCCAGCTCGCTGGCCAGGTGGTCTGTATTaGCTTCTCCATCAGCGAAGAAGTCCCCCAGAGATT | + |
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Preference number: 6 (lower is better) Translates to: PLHPARWPGGLY*LLHQRRSPPEI Trigger: AATCTCTGGGGGACTTCTTCGCTGATGGAGAAGCCAATACAGACCACCTGGCCAGCGAGCTGGATGAAGCGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061923.5 |
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| CDS CAA 72 bp | ACCGCTTCATCCAGCTCGCTGGCCAGGTGGTCTGTATaGGCTTCTCCATCAGCGAAGAAGTCCCCCAGAGAT | + |
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Preference number: 6 (lower is better) Translates to: TASSSSLARWSV*ASPSAKKSPRD Trigger: ATCTCTGGGGGACTTCTTCGCTGATGGAGAAGCCAATACAGACCACCTGGCCAGCGAGCTGGATGAAGCGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061923.5 |
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