Pregenerated sensors for RLN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039097Ensembl transcript IDs: ENSMUST00000044143.6
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GGAACAGAAAGAGGCCATCAACCAGGTAGCAAGAATGCATGTGAACACTGGACTCCGAGACTCGCGTCCTaGAAGGCTGGCTCAGCAATA | + |
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Preference number: 4 (lower is better) Translates to: GTERGHQPGSKNACEHWTPRLAS*KAGSAI Trigger: TATTGCTGAGCCAGCCTTGCAGGACGCGAGTCTCGG...AGTCCAGTGTTCACATGCATTCTTGCTACCTGGTTGATGGCCTCTTTCTGTTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS-3UTR GCA 90 bp | GAAAAGGGAACAGAAAGAGGCCATCAACCAGGTAGCAAGAATGCATGTGAACACACAACTTCAGTGGCTTaGCTGGCAAGCAGAGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: EKGTERGHQPGSKNACEHTTSVA*LASRAG Trigger: GCCAGCTCTGCTTGCCAGGCAAGCCACTGAAGTTGT...GTGTTCACATGCATTCTTGCTACCTGGTTGATGGCCTCTTTCTGTTCCCTTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS-3UTR TCA 90 bp | ATAAATAAGAAAAGGGAACAGAAAGAGGCCATCAACCAGGTAGCAAGAATGCATTCTGGGAGCGAGGCCTaGGCCTCAGACAGTACTGCC | + |
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Preference number: 4 (lower is better) Translates to: INKKREQKEAINQVARMHSGSEA*ASDSTA Trigger: GGCAGTACTGTCTGAGGCTCAGGCCTCGCTCCCAGA...ATGCATTCTTGCTACCTGGTTGATGGCCTCTTTCTGTTCCCTTTTCTTATTTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS-3UTR CCA 90 bp | ATAAATAAGAAAAGGGAACAGAAAGAGGCCATCAACCAGGTAGCAAGAATGCATCCTGGCAAGCAGAGCTaGCTCCTCCTGGCTCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: INKKREQKEAINQVARMHPGKQS*LLLAQS Trigger: GCTTTGAGCCAGGAGGAGCCAGCTCTGCTTGCCAGG...ATGCATTCTTGCTACCTGGTTGATGGCCTCTTTCTGTTCCCTTTTCTTATTTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS-3UTR GCA 90 bp | GAAAAGGGAACAGAAAGAGGCCATCAACCAGGTAGCAAGAATGCATGTGAACACAGCCTCAGACAGTACTaGCTTGAGCTCTTCAGACAA | + |
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Preference number: 4 (lower is better) Translates to: EKGTERGHQPGSKNACEHSLRQY*LELFRQ Trigger: TTGTCTGAAGAGCTCAAGGCAGTACTGTCTGAGGCT...GTGTTCACATGCATTCTTGCTACCTGGTTGATGGCCTCTTTCTGTTCCCTTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS-3UTR CCA 90 bp | ATCCTAATAAATAAGAAAAGGGAACAGAAAGAGGCCATCAACCAGGTAGCAAGACTTCAGTGGCTTGCCTaGCAAGCAGAGCTGGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: ILINKKREQKEAINQVARLQWLA*QAELAP Trigger: AGGAGCCAGCTCTGCTTGCCAGGCAAGCCACTGAAG...TCTTGCTACCTGGTTGATGGCCTCTTTCTGTTCCCTTTTCTTATTTATTAGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS-3UTR CCA 90 bp | ATAAATAAGAAAAGGGAACAGAAAGAGGCCATCAACCAGGTAGCAAGAATGCATAGAGCTGGCTCCTCCTaGCTCAAAGCCAATCTTCCC | + |
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Preference number: 4 (lower is better) Translates to: INKKREQKEAINQVARMHRAGSS*LKANLP Trigger: GGGAAGATTGGCTTTGAGCCAGGAGGAGCCAGCTCT...ATGCATTCTTGCTACCTGGTTGATGGCCTCTTTCTGTTCCCTTTTCTTATTTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS-3UTR CCA 90 bp | CAAATCCTAATAAATAAGAAAAGGGAACAGAAAGAGGCCATCAACCAGGTAGCACAGAACCCCAGGAGCTaGAGCAAAAATCTGCTGGAC | + |
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Preference number: 4 (lower is better) Translates to: QILINKKREQKEAINQVAQNPRS*SKNLLD Trigger: GTCCAGCAGATTTTTGCTCCAGCTCCTGGGGTTCTG...TGCTACCTGGTTGATGGCCTCTTTCTGTTCCCTTTTCTTATTTATTAGGATTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS-3UTR GCA 90 bp | TCTCAAATCCTAATAAATAAGAAAAGGGAACAGAAAGAGGCCATCAACCAGGTAGAATGGGTATCTGATTaGAAGTATTTAAGCCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: SQILINKKREQKEAINQVEWVSD*KYLSPG Trigger: TCCAGGGCTTAAATACTTGCAATCAGATACCCATTC...TACCTGGTTGATGGCCTCTTTCTGTTCCCTTTTCTTATTTATTAGGATTTGAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS CCA 90 bp | GATGAAGGATGGCACAACTTCAGTGGCTTGCCTGGCAAGCAGAGCTaGCTCCTCCTGGCTCAAAGCCAATCTTCCCACGGAGGCCCCGCA | + |
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Preference number: 5 (lower is better) Translates to: DEGWHNFSGLPGKQS*LLLAQSQSSHGGPA Trigger: TGCGGGGCCTCCGTGGGAAGATTGGCTTTGAGCCAGGAGGAGCCAGCTCTGCTTGCCAGGCAAGCCACTGAAGTTGTGCCATCCTTCATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS TCA 90 bp | GTTGTAGCTCTGGGAGCGAGGCCTGAGCCTCAGACAGTACTGCCTTaGGCTCTTCAGACAAATTTGGAAGGCATTTCAGCGTCGTATCGA | + |
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Preference number: 5 (lower is better) Translates to: VVALGARPEPQTVLP*ALQTNLEGISASYR Trigger: TCGATACGACGCTGAAATGCCTTCCAAATTTGTCTGAAGAGCTCAAGGCAGTACTGTCTGAGGCTCAGGCCTCGCTCCCAGAGCTACAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS GCA 90 bp | ATCAATCCACCAGACTCCCTCTTTTTCCGTGAATGGGTATCTGATTaGAAGTATTTAAGCCCTGGAGGACTGCCGTCTTCTGCTTCACCC | + |
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Preference number: 5 (lower is better) Translates to: INPPDSLFFREWVSD*KYLSPGGLPSSASP Trigger: GGGTGAAGCAGAAGACGGCAGTCCTCCAGGGCTTAAATACTTGCAATCAGATACCCATTCACGGAAAAAGAGGGAGTCTGGTGGATTGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS CCA 90 bp | CATTGCTGGCTCATCAATCCACCAGACTCCCTCTTTTTCCGTGAATaGGTATCTGATTGCAAGTATTTAAGCCCTGGAGGACTGCCGTCT | + |
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Preference number: 5 (lower is better) Translates to: HCWLINPPDSLFFRE*VSDCKYLSPGGLPS Trigger: AGACGGCAGTCCTCCAGGGCTTAAATACTTGCAATCAGATACCCATTCACGGAAAAAGAGGGAGTCTGGTGGATTGATGAGCCAGCAATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS CCA 90 bp | AGTTTAGCAATAGATCTTCTGCTACAACCGACGTGGCAACATTGCTaGCTCATCAATCCACCAGACTCCCTCTTTTTCCGTGAATGGGTA | + |
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Preference number: 5 (lower is better) Translates to: SLAIDLLLQPTWQHC*LINPPDSLFFREWV Trigger: TACCCATTCACGGAAAAAGAGGGAGTCTGGTGGATTGATGAGCCAGCAATGTTGCCACGTCGGTTGTAGCAGAAGATCTATTGCTAAACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS CCA 72 bp | TCAGTGGCTTGCCTGGCAAGCAGAGCTGGCTCCTCCTaGCTCAAAGCCAATCTTCCCACGGAGGCCCCGCAG | + |
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Preference number: 6 (lower is better) Translates to: SVACLASRAGSS*LKANLPTEAPQ Trigger: CTGCGGGGCCTCCGTGGGAAGATTGGCTTTGAGCCAGGAGGAGCCAGCTCTGCTTGCCAGGCAAGCCACTGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS CCA 72 bp | TGGCACAACTTCAGTGGCTTGCCTGGCAAGCAGAGCTaGCTCCTCCTGGCTCAAAGCCAATCTTCCCACGGA | + |
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Preference number: 6 (lower is better) Translates to: WHNFSGLPGKQS*LLLAQSQSSHG Trigger: TCCGTGGGAAGATTGGCTTTGAGCCAGGAGGAGCCAGCTCTGCTTGCCAGGCAAGCCACTGAAGTTGTGCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS TCA 72 bp | CTGGGAGCGAGGCCTGAGCCTCAGACAGTACTGCCTTaGGCTCTTCAGACAAATTTGGAAGGCATTTCAGCG | + |
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Preference number: 6 (lower is better) Translates to: LGARPEPQTVLP*ALQTNLEGISA Trigger: CGCTGAAATGCCTTCCAAATTTGTCTGAAGAGCTCAAGGCAGTACTGTCTGAGGCTCAGGCCTCGCTCCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS GCA 72 bp | GCAATAGATCTTCTGCTACAACCGACGTGGCAACATTaGTGGCTCATCAATCCACCAGACTCCCTCTTTTTC | + |
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Preference number: 6 (lower is better) Translates to: AIDLLLQPTWQH*WLINPPDSLFF Trigger: GAAAAAGAGGGAGTCTGGTGGATTGATGAGCCAGCAATGTTGCCACGTCGGTTGTAGCAGAAGATCTATTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS CCA 72 bp | ATAGATCTTCTGCTACAACCGACGTGGCAACATTGCTaGCTCATCAATCCACCAGACTCCCTCTTTTTCCGT | + |
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Preference number: 6 (lower is better) Translates to: IDLLLQPTWQHC*LINPPDSLFFR Trigger: ACGGAAAAAGAGGGAGTCTGGTGGATTGATGAGCCAGCAATGTTGCCACGTCGGTTGTAGCAGAAGATCTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS CAA 72 bp | AGCAATAGATCTTCTGCTACAACCGACGTGGCAACATaGCTGGCTCATCAATCCACCAGACTCCCTCTTTTT | + |
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Preference number: 6 (lower is better) Translates to: SNRSSATTDVAT*LAHQSTRLPLF Trigger: AAAAAGAGGGAGTCTGGTGGATTGATGAGCCAGCAATGTTGCCACGTCGGTTGTAGCAGAAGATCTATTGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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| CDS CCA 72 bp | CTCATCAATCCACCAGACTCCCTCTTTTTCCGTGAATaGGTATCTGATTGCAAGTATTTAAGCCCTGGAGGA | + |
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Preference number: 6 (lower is better) Translates to: LINPPDSLFFRE*VSDCKYLSPGG Trigger: TCCTCCAGGGCTTAAATACTTGCAATCAGATACCCATTCACGGAAAAAGAGGGAGTCTGGTGGATTGATGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044143.6 |
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