Pregenerated sensors for RITA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029600Ensembl transcript IDs: ENSMUST00000031599.9, ENSMUST00000111884.8, ENSMUST00000140554.2, ENSMUST00000156356.2, ENSMUST00000177800.8
Found 121 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCGAGAAGCAGCAGAAGGTGGATTTCCGGGCCTCCCAGGTCAGGCTaGCCAAGACGCAGCAAGATATCCTGGCGCTTCGGGCACAGTACC | + |
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Preference number: 1 (lower is better) Translates to: PRSSRRWISGPPRSG*PRRSKISWRFGHST Trigger: GGTACTGTGCCCGAAGCGCCAGGATATCTTGCTGCGTCTTGGCCAGCCTGACCTGGGAGGCCCGGAAATCCACCTTCTGCTGCTTCTCGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156356.2 |
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| 3UTR TCA 90 bp | TTTGCAGGGAGCTGGGTGGGGCTTGGCACCGATGCAGAAGGCGGCTaGGACACCGCTAGAGAGACAACATCTCAAGGACCCCAAACACCC | + |
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Preference number: 1 (lower is better) Translates to: FAGSWVGLGTDAEGG*DTARETTSQGPQTP Trigger: GGGTGTTTGGGGTCCTTGAGATGTTGTCTCTCTAGCGGTGTCTCAGCCGCCTTCTGCATCGGTGCCAAGCCCCACCCAGCTCCCTGCAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| 3UTR CCA 90 bp | TCCGGGCCTCCCAGGTCAGGCTGGCCAAGACGCAGCAAGATATCCTaGCGCTTCGGGCACAGTACCACAACCTGGTCCATGTGTTTTCTT | + |
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Preference number: 1 (lower is better) Translates to: SGPPRSGWPRRSKIS*RFGHSTTTWSMCFL Trigger: AAGAAAACACATGGACCAGGTTGTGGTACTGTGCCCGAAGCGCCAGGATATCTTGCTGCGTCTTGGCCAGCCTGACCTGGGAGGCCCGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156356.2 |
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| 3UTR CCA 90 bp | GCATTGTGTGTGCCTGTGTGCCTGTGTGTACGTGTGTGTGTGTGCTaGCATGCCATGGCACAAGTATGGAGGTCAAGAAGGACTCTCAGG | + |
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Preference number: 1 (lower is better) Translates to: ALCVPVCLCVRVCVC*HAMAQVWRSRRTLR Trigger: CCTGAGAGTCCTTCTTGACCTCCATACTTGTGCCATGGCATGCCAGCACACACACACACGTACACACAGGCACACAGGCACACACAATGC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111884.8 |
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| 3UTR CCA 90 bp | AAATACATGAATACTAAAATAATGTCTTCCCATGTCCCACCCACTTaGGTCCACGCACAGCCCAGGACACTTCCTCAGAGCCTCCAGATC | + |
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Preference number: 1 (lower is better) Translates to: KYMNTKIMSSHVPPT*VHAQPRTLPQSLQI Trigger: GATCTGGAGGCTCTGAGGAAGTGTCCTGGGCTGTGCGTGGACCCAAGTGGGTGGGACATGGGAAGACATTATTTTAGTATTCATGTATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| 3UTR-3UTR TCA 90 bp | GCTGGGTGGGGCTTGGCACCGATGCAGAAGGCGGCTGAGACACCGCTAGAGAGAGACCCCACCCGAGCTTaGGTCCTGGCTTTGGGCCAA | + |
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Preference number: 2 (lower is better) Translates to: AGWGLAPMQKAAETPLERDPTRA*VLALGQ Trigger: TTGGCCCAAAGCCAGGACTCAAGCTCGGGTGGGGTC...TCTCTCTAGCGGTGTCTCAGCCGCCTTCTGCATCGGTGCCAAGCCCCACCCAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| 3UTR-3UTR CCA 90 bp | CAAACACCCTTCAGAGAAGGCTGGGGACATCCTGAGCTTGTGGGGACTAGGACAGGCGTTTCCAGCATCTaGAGGCCCTGGGGACCGTTG | + |
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Preference number: 2 (lower is better) Translates to: QTPFREGWGHPELVGTRTGVSSI*RPWGPL Trigger: CAACGGTCCCCAGGGCCTCCAGATGCTGGAAACGCC...TGTCCTAGTCCCCACAAGCTCAGGATGTCCCCAGCCTTCTCTGAAGGGTGTTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| 3UTR-3UTR GCA 90 bp | CCATGTCCCACCCACTTGGGTCCACGCACAGCCCAGGACACTTCCTCAGAGCCTAAAAACATACTCCTTTaGAGGGAGCTGGGTGGGGCT | + |
|
Preference number: 2 (lower is better) Translates to: PCPTHLGPRTAQDTSSEPKNILL*RELGGA Trigger: AGCCCCACCCAGCTCCCTGCAAAGGAGTATGTTTTT...AGGCTCTGAGGAAGTGTCCTGGGCTGTGCGTGGACCCAAGTGGGTGGGACATGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| 3UTR-3UTR CCA 90 bp | GAGACACCGCTAGAGAGACAACATCTCAAGGACCCCAAACACCCTTCAGAGAAGGGCGTTTCCAGCATCTaGAGGCCCTGGGGACCGTTG | + |
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Preference number: 2 (lower is better) Translates to: ETPLERQHLKDPKHPSEKGVSSI*RPWGPL Trigger: CAACGGTCCCCAGGGCCTCCAGATGCTGGAAACGCC...CTTCTCTGAAGGGTGTTTGGGGTCCTTGAGATGTTGTCTCTCTAGCGGTGTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| 3UTR-3UTR CCA 90 bp | GCCTGTGTGCCTGTGTGTACGTGTGTGTGTGTGCTGGCATGCCATGGCACAAGTAGGACTCTCAGGAGTTaGTTTCCTCCTTCCGCTGAC | + |
|
Preference number: 2 (lower is better) Translates to: ACVPVCTCVCVLACHGTSRTLRS*FPPSAD Trigger: GTCAGCGGAAGGAGGAAACCAACTCCTGAGAGTCCT...ACTTGTGCCATGGCATGCCAGCACACACACACACGTACACACAGGCACACAGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111884.8 |
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| 3UTR CCA 72 bp | AGCAGAAGGTGGATTTCCGGGCCTCCCAGGTCAGGCTaGCCAAGACGCAGCAAGATATCCTGGCGCTTCGGG | + |
|
Preference number: 3 (lower is better) Translates to: SRRWISGPPRSG*PRRSKISWRFG Trigger: CCCGAAGCGCCAGGATATCTTGCTGCGTCTTGGCCAGCCTGACCTGGGAGGCCCGGAAATCCACCTTCTGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156356.2 |
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| 3UTR TCA 72 bp | AGCTGGGTGGGGCTTGGCACCGATGCAGAAGGCGGCTaGGACACCGCTAGAGAGACAACATCTCAAGGACCC | + |
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Preference number: 3 (lower is better) Translates to: SWVGLGTDAEGG*DTARETTSQGP Trigger: GGGTCCTTGAGATGTTGTCTCTCTAGCGGTGTCTCAGCCGCCTTCTGCATCGGTGCCAAGCCCCACCCAGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| 3UTR CCA 72 bp | CCCAGGTCAGGCTGGCCAAGACGCAGCAAGATATCCTaGCGCTTCGGGCACAGTACCACAACCTGGTCCATG | + |
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Preference number: 3 (lower is better) Translates to: PRSGWPRRSKIS*RFGHSTTTWSM Trigger: CATGGACCAGGTTGTGGTACTGTGCCCGAAGCGCCAGGATATCTTGCTGCGTCTTGGCCAGCCTGACCTGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156356.2 |
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| 3UTR-3UTR CAA 90 bp | CTAGAGAGACAACATCTCAAGGACCCCAAACACCCTTCAGAGAAGGCTGGGGACGGACCCCACCCGAGCTaGAGTCCTGGCTTTGGGCCA | + |
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Preference number: 3 (lower is better) Translates to: LERQHLKDPKHPSEKAGDGPHPS*SPGFGP Trigger: TGGCCCAAAGCCAGGACTCAAGCTCGGGTGGGGTCC...GTCCCCAGCCTTCTCTGAAGGGTGTTTGGGGTCCTTGAGATGTTGTCTCTCTAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| 3UTR CCA 72 bp | CACCCTTCAGAGAAGGCTGGGGACATCCTGAGCTTGTaGGGACTAGGACAATATGGCCCATCCTCACCGTGG | + |
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Preference number: 3 (lower is better) Translates to: HPSEKAGDILSL*GLGQYGPSSPW Trigger: CCACGGTGAGGATGGGCCATATTGTCCTAGTCCCCACAAGCTCAGGATGTCCCCAGCCTTCTCTGAAGGGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| 3UTR CCA 72 bp | GCCAGCTGTCCTGTGACTGGGAGTGGGAGGACTGCGTaGCTATTAAATAGGGCCCTGTCCTCATTCGTCCTG | + |
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Preference number: 3 (lower is better) Translates to: ASCPVTGSGRTA*LLNRALSSFVL Trigger: CAGGACGAATGAGGACAGGGCCCTATTTAATAGCCACGCAGTCCTCCCACTCCCAGTCACAGGACAGCTGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156356.2 |
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| 3UTR CCA 72 bp | GTGCCTGTGTGCCTGTGTGTACGTGTGTGTGTGTGCTaGCATGCCATGGCACAAGTATGGAGGTCAAGAAGG | + |
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Preference number: 3 (lower is better) Translates to: VPVCLCVRVCVC*HAMAQVWRSRR Trigger: CCTTCTTGACCTCCATACTTGTGCCATGGCATGCCAGCACACACACACACGTACACACAGGCACACAGGCAC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111884.8 |
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| 3UTR GCA 72 bp | TGTGTGCCTGTGTGCCTGTGTGTACGTGTGTGTGTGTaGTGGCATGCCATGGCACAAGTATGGAGGTCAAGA | + |
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Preference number: 3 (lower is better) Translates to: CVPVCLCVRVCV*WHAMAQVWRSR Trigger: TCTTGACCTCCATACTTGTGCCATGGCATGCCAGCACACACACACACGTACACACAGGCACACAGGCACACA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111884.8 |
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| 3UTR CCA 72 bp | CGTGTGTGTGTGTGCTGGCATGCCATGGCACAAGTATaGAGGTCAAGAAGGACTCTCAGGAGTTGGTTTCCT | + |
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Preference number: 3 (lower is better) Translates to: RVCVCWHAMAQV*RSRRTLRSWFP Trigger: AGGAAACCAACTCCTGAGAGTCCTTCTTGACCTCCATACTTGTGCCATGGCATGCCAGCACACACACACACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111884.8 |
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| 3UTR CCA 72 bp | AATACTAAAATAATGTCTTCCCATGTCCCACCCACTTaGGTCCACGCACAGCCCAGGACACTTCCTCAGAGC | + |
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Preference number: 3 (lower is better) Translates to: NTKIMSSHVPPT*VHAQPRTLPQS Trigger: GCTCTGAGGAAGTGTCCTGGGCTGTGCGTGGACCCAAGTGGGTGGGACATGGGAAGACATTATTTTAGTATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| 3UTR CCA 72 bp | GCACAAGTATGGAGGTCAAGAAGGACTCTCAGGAGTTaGTTTCCTCCTTCCGCTGACTCAAACTCAGGTCCT | + |
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Preference number: 3 (lower is better) Translates to: AQVWRSRRTLRS*FPPSADSNSGP Trigger: AGGACCTGAGTTTGAGTCAGCGGAAGGAGGAAACCAACTCCTGAGAGTCCTTCTTGACCTCCATACTTGTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111884.8 |
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| CDS-3UTR TCA 90 bp | ATCCTCACCGTGGCACCCCGTGGAGGCGTTTCCAGCATCTGGAGGCCCTGGGGAAGGATGCCCTGGCCTTaGCCCTGTAGCTGGTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: ILTVAPRGGVSSIWRPWGRMPWP*PCSWWD Trigger: GTCCCACCAGCTACAGGGTCAAGGCCAGGGCATCCT...TCCCCAGGGCCTCCAGATGCTGGAAACGCCTCCACGGGGTGCCACGGTGAGGAT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR CCA 90 bp | GCTGGGTGGGGCTTGGCACCGATGCAGAAGGCGGCTGAGACACCGCTAGAGAGAGCCCTTCGGTGGTCCTaGGCCCACTCCTCTGGATCG | + |
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Preference number: 4 (lower is better) Translates to: AGWGLAPMQKAAETPLERALRWS*AHSSGS Trigger: CGATCCAGAGGAGTGGGCCCAGGACCACCGAAGGGC...TCTCTCTAGCGGTGTCTCAGCCGCCTTCTGCATCGGTGCCAAGCCCCACCCAGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR CCA 90 bp | ATCCTCACCGTGGCACCCCGTGGAGGCGTTTCCAGCATCTGGAGGCCCTGGGGAGTCCAGCTGGGTGAATaGCTCGCAGAGGGGTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: ILTVAPRGGVSSIWRPWGVQLGE*LAEGSP Trigger: GGGAGACCCCTCTGCGAGCCATTCACCCAGCTGGAC...TCCCCAGGGCCTCCAGATGCTGGAAACGCCTCCACGGGGTGCCACGGTGAGGAT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR TCA 90 bp | CCATGTCCCACCCACTTGGGTCCACGCACAGCCCAGGACACTTCCTCAGAGCCTGAGGGTCCAGCTGGGTaGATGGCTCGCAGAGGGGTC | + |
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Preference number: 4 (lower is better) Translates to: PCPTHLGPRTAQDTSSEPEGPAG*MARRGV Trigger: GACCCCTCTGCGAGCCATTCACCCAGCTGGACCCTC...AGGCTCTGAGGAAGTGTCCTGGGCTGTGCGTGGACCCAAGTGGGTGGGACATGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR CCA 90 bp | GCTGGGTGGGGCTTGGCACCGATGCAGAAGGCGGCTGAGACACCGCTAGAGAGACCTAGGGGTGGCTGGTaGGGTCCAGAAAAGGGTCCG | + |
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Preference number: 4 (lower is better) Translates to: AGWGLAPMQKAAETPLERPRGGW*GPEKGP Trigger: CGGACCCTTTTCTGGACCCCACCAGCCACCCCTAGG...TCTCTCTAGCGGTGTCTCAGCCGCCTTCTGCATCGGTGCCAAGCCCCACCCAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR CCA 90 bp | GCTGGGTGGGGCTTGGCACCGATGCAGAAGGCGGCTGAGACACCGCTAGAGAGAGGGAGCACTGGAAGCTaGATGACCCGTGCTGGGGAC | + |
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Preference number: 4 (lower is better) Translates to: AGWGLAPMQKAAETPLERGSTGS*MTRAGD Trigger: GTCCCCAGCACGGGTCATCCAGCTTCCAGTGCTCCC...TCTCTCTAGCGGTGTCTCAGCCGCCTTCTGCATCGGTGCCAAGCCCCACCCAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR TCA 90 bp | GAGGCGTTTCCAGCATCTGGAGGCCCTGGGGACCGTTGTCTCTATAGGACCCCAAGGATGCCCTGGCCTTaGCCCTGTAGCTGGTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: EAFPASGGPGDRCLYRTPRMPWP*PCSWWD Trigger: GTCCCACCAGCTACAGGGTCAAGGCCAGGGCATCCT...TGGGGTCCTATAGAGACAACGGTCCCCAGGGCCTCCAGATGCTGGAAACGCCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR GCA 90 bp | CCATGTCCCACCCACTTGGGTCCACGCACAGCCCAGGACACTTCCTCAGAGCCTTGTAGCTGGTGGGACTaGGGTGCTGAAGGTGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: PCPTHLGPRTAQDTSSEPCSWWD*GAEGGG Trigger: CCCTCCACCTTCAGCACCGCAGTCCCACCAGCTACA...AGGCTCTGAGGAAGTGTCCTGGGCTGTGCGTGGACCCAAGTGGGTGGGACATGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR CCA 90 bp | CCGTGGAGGCGTTTCCAGCATCTGGAGGCCCTGGGGACCGTTGTCTCTATAGGACCTGGAGGGTCCAGCTaGGTGAATGGCTCGCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: PWRRFQHLEALGTVVSIGPGGSS*VNGSQR Trigger: CCTCTGCGAGCCATTCACCCAGCTGGACCCTCCAGG...TCCTATAGAGACAACGGTCCCCAGGGCCTCCAGATGCTGGAAACGCCTCCACGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR GCA 90 bp | ATCCTCACCGTGGCACCCCGTGGAGGCGTTTCCAGCATCTGGAGGCCCTGGGGATGGTTCTTGCTGGGCTaGCAAACAGGGTCTCATCCA | + |
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Preference number: 4 (lower is better) Translates to: ILTVAPRGGVSSIWRPWGWFLLG*QTGSHP Trigger: TGGATGAGACCCTGTTTGGCAGCCCAGCAAGAACCA...TCCCCAGGGCCTCCAGATGCTGGAAACGCCTCCACGGGGTGCCACGGTGAGGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR CCA 90 bp | CCGTGGAGGCGTTTCCAGCATCTGGAGGCCCTGGGGACCGTTGTCTCTATAGGACTCTGGGCTCTGTCCTaGAGGGTCCAGCTGGGTGAA | + |
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Preference number: 4 (lower is better) Translates to: PWRRFQHLEALGTVVSIGLWALS*RVQLGE Trigger: TTCACCCAGCTGGACCCTCCAGGACAGAGCCCAGAG...TCCTATAGAGACAACGGTCCCCAGGGCCTCCAGATGCTGGAAACGCCTCCACGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR TCA 90 bp | GCCTGTGTGCCTGTGTGTACGTGTGTGTGTGTGCTGGCATGCCATGGCACAAGTAGGATGCCCTGGCCTTaGCCCTGTAGCTGGTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: ACVPVCTCVCVLACHGTSRMPWP*PCSWWD Trigger: GTCCCACCAGCTACAGGGTCAAGGCCAGGGCATCCT...ACTTGTGCCATGGCATGCCAGCACACACACACACGTACACACAGGCACACAGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111884.8 |
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| CDS-3UTR TCA 90 bp | AGCTGTCCTGTGACTGGGAGTGGGAGGACTGCGTGGCTATTAAATAGGGCCCTGAGGATGCCCTGGCCTTaGCCCTGTAGCTGGTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: SCPVTGSGRTAWLLNRALRMPWP*PCSWWD Trigger: GTCCCACCAGCTACAGGGTCAAGGCCAGGGCATCCT...CAGGGCCCTATTTAATAGCCACGCAGTCCTCCCACTCCCAGTCACAGGACAGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156356.2 |
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| CDS-3UTR GCA 90 bp | CCGTGGAGGCGTTTCCAGCATCTGGAGGCCCTGGGGACCGTTGTCTCTATAGGAGGCAGGTCTGGTTCTTaGTGGGCTGCCAAACAGGGT | + |
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Preference number: 4 (lower is better) Translates to: PWRRFQHLEALGTVVSIGGRSGS*WAAKQG Trigger: ACCCTGTTTGGCAGCCCAGCAAGAACCAGACCTGCC...TCCTATAGAGACAACGGTCCCCAGGGCCTCCAGATGCTGGAAACGCCTCCACGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR CCA 90 bp | CCGTGGAGGCGTTTCCAGCATCTGGAGGCCCTGGGGACCGTTGTCTCTATAGGACTGGTTGGGCAGGTCTaGTTCTTGCTGGGCTGCCAA | + |
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Preference number: 4 (lower is better) Translates to: PWRRFQHLEALGTVVSIGLVGQV*FLLGCQ Trigger: TTGGCAGCCCAGCAAGAACCAGACCTGCCCAACCAG...TCCTATAGAGACAACGGTCCCCAGGGCCTCCAGATGCTGGAAACGCCTCCACGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR CCA 90 bp | CCATGTCCCACCCACTTGGGTCCACGCACAGCCCAGGACACTTCCTCAGAGCCTACTCACAGTCTCTCTTaGCCAGAGAGCCCTTCGGTG | + |
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Preference number: 4 (lower is better) Translates to: PCPTHLGPRTAQDTSSEPTHSLS*PESPSV Trigger: CACCGAAGGGCTCTCTGGCCAAGAGAGACTGTGAGT...AGGCTCTGAGGAAGTGTCCTGGGCTGTGCGTGGACCCAAGTGGGTGGGACATGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR CCA 90 bp | CCGTGGAGGCGTTTCCAGCATCTGGAGGCCCTGGGGACCGTTGTCTCTATAGGACCTTGGTGTGAGGTTTaGGGTGCTGCCCCTGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: PWRRFQHLEALGTVVSIGPWCEV*GAAPGR Trigger: TCTTCCAGGGGCAGCACCCCAAACCTCACACCAAGG...TCCTATAGAGACAACGGTCCCCAGGGCCTCCAGATGCTGGAAACGCCTCCACGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR CCA 90 bp | CCATGTCCCACCCACTTGGGTCCACGCACAGCCCAGGACACTTCCTCAGAGCCTTCCTGGGATGACATCTaGGAGCCTGCAGTCACTCTG | + |
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Preference number: 4 (lower is better) Translates to: PCPTHLGPRTAQDTSSEPSWDDI*EPAVTL Trigger: CAGAGTGACTGCAGGCTCCCAGATGTCATCCCAGGA...AGGCTCTGAGGAAGTGTCCTGGGCTGTGCGTGGACCCAAGTGGGTGGGACATGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR TCA 90 bp | ACCCCACCCGAGCTTGAGTCCTGGCTTTGGGCCAAAAGCATCCCTGACGAGAATGCACTGGAAGCTGGATaGCCCGTGCTGGGGACAGTT | + |
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Preference number: 4 (lower is better) Translates to: TPPELESWLWAKSIPDENALEAG*PVLGTV Trigger: AACTGTCCCCAGCACGGGTCATCCAGCTTCCAGTGC...ATTCTCGTCAGGGATGCTTTTGGCCCAAAGCCAGGACTCAAGCTCGGGTGGGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR GCA 90 bp | AGTTTTCGGAGAACAGCCTCCTCCGCACGAAGCAGGAGGCCGAGAAGCAGCAGAGGCAGGTCTGGTTCTTaGTGGGCTGCCAAACAGGGT | + |
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Preference number: 4 (lower is better) Translates to: SFRRTASSARSRRPRSSRGRSGS*WAAKQG Trigger: ACCCTGTTTGGCAGCCCAGCAAGAACCAGACCTGCC...TCTGCTGCTTCTCGGCCTCCTGCTTCGTGCGGAGGAGGCTGTTCTCCGAAAACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156356.2 |
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| CDS-3UTR CCA 90 bp | CTAGAGAGACAACATCTCAAGGACCCCAAACACCCTTCAGAGAAGGCTGGGGACGCCCTTCGGTGGTCCTaGGCCCACTCCTCTGGATCG | + |
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Preference number: 4 (lower is better) Translates to: LERQHLKDPKHPSEKAGDALRWS*AHSSGS Trigger: CGATCCAGAGGAGTGGGCCCAGGACCACCGAAGGGC...GTCCCCAGCCTTCTCTGAAGGGTGTTTGGGGTCCTTGAGATGTTGTCTCTCTAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR CCA 90 bp | GGGACCGTTGTCTCTATAGGACCCCACCCGAGCTTGAGTCCTGGCTTTGGGCCAACTCACAGTCTCTCTTaGCCAGAGAGCCCTTCGGTG | + |
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Preference number: 4 (lower is better) Translates to: GTVVSIGPHPSLSPGFGPTHSLS*PESPSV Trigger: CACCGAAGGGCTCTCTGGCCAAGAGAGACTGTGAGT...TGGCCCAAAGCCAGGACTCAAGCTCGGGTGGGGTCCTATAGAGACAACGGTCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR CCA 90 bp | GAAGGTGGATTTCCGGGCCTCCCAGGTCAGGCTGGCCAAGACGCAGCAAGATATCCTTGGTGTGAGGTTTaGGGTGCTGCCCCTGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: EGGFPGLPGQAGQDAARYPWCEV*GAAPGR Trigger: TCTTCCAGGGGCAGCACCCCAAACCTCACACCAAGG...ATATCTTGCTGCGTCTTGGCCAGCCTGACCTGGGAGGCCCGGAAATCCACCTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156356.2 |
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| CDS-3UTR CCA 90 bp | CAAACACCCTTCAGAGAAGGCTGGGGACATCCTGAGCTTGTGGGGACTAGGACACCTAGGGGTGGCTGGTaGGGTCCAGAAAAGGGTCCG | + |
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Preference number: 4 (lower is better) Translates to: QTPFREGWGHPELVGTRTPRGGW*GPEKGP Trigger: CGGACCCTTTTCTGGACCCCACCAGCCACCCCTAGG...TGTCCTAGTCCCCACAAGCTCAGGATGTCCCCAGCCTTCTCTGAAGGGTGTTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR CCA 90 bp | CAACATCTCAAGGACCCCAAACACCCTTCAGAGAAGGCTGGGGACATCCTGAGCGTCCAGCTGGGTGAATaGCTCGCAGAGGGGTCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: QHLKDPKHPSEKAGDILSVQLGE*LAEGSP Trigger: GGGAGACCCCTCTGCGAGCCATTCACCCAGCTGGAC...GCTCAGGATGTCCCCAGCCTTCTCTGAAGGGTGTTTGGGGTCCTTGAGATGTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR CCA 90 bp | CAAACACCCTTCAGAGAAGGCTGGGGACATCCTGAGCTTGTGGGGACTAGGACACCTGGAGGGTCCAGCTaGGTGAATGGCTCGCAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: QTPFREGWGHPELVGTRTPGGSS*VNGSQR Trigger: CCTCTGCGAGCCATTCACCCAGCTGGACCCTCCAGG...TGTCCTAGTCCCCACAAGCTCAGGATGTCCCCAGCCTTCTCTGAAGGGTGTTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR CCA 90 bp | ACCCCACCCGAGCTTGAGTCCTGGCTTTGGGCCAAAAGCATCCCTGACGAGAATTGGTCTGGGGAGCACTaGAAGCTGGATGACCCGTGC | + |
|
Preference number: 4 (lower is better) Translates to: TPPELESWLWAKSIPDENWSGEH*KLDDPC Trigger: GCACGGGTCATCCAGCTTCCAGTGCTCCCCAGACCA...ATTCTCGTCAGGGATGCTTTTGGCCCAAAGCCAGGACTCAAGCTCGGGTGGGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR TCA 90 bp | ACCCCACCCGAGCTTGAGTCCTGGCTTTGGGCCAAAAGCATCCCTGACGAGAATCAACCCATCCTGGGATaGCATCTGGGAGCCTGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: TPPELESWLWAKSIPDENQPILG*HLGACS Trigger: ACTGCAGGCTCCCAGATGTCATCCCAGGATGGGTTG...ATTCTCGTCAGGGATGCTTTTGGCCCAAAGCCAGGACTCAAGCTCGGGTGGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR TCA 90 bp | CAAACACCCTTCAGAGAAGGCTGGGGACATCCTGAGCTTGTGGGGACTAGGACAGCACTGGAAGCTGGATaGCCCGTGCTGGGGACAGTT | + |
|
Preference number: 4 (lower is better) Translates to: QTPFREGWGHPELVGTRTALEAG*PVLGTV Trigger: AACTGTCCCCAGCACGGGTCATCCAGCTTCCAGTGC...TGTCCTAGTCCCCACAAGCTCAGGATGTCCCCAGCCTTCTCTGAAGGGTGTTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR GCA 90 bp | GTGGAGGCGTTTCCAGCATCTGGAGGCCCTGGGGACCGTTGTCTCTATAGGACCCTCATCCACATAGGATaGCCTGGCCTTGACCCTGTA | + |
|
Preference number: 4 (lower is better) Translates to: VEAFPASGGPGDRCLYRTLIHIG*PGLDPV Trigger: TACAGGGTCAAGGCCAGGGCATCCTATGTGGATGAG...GGTCCTATAGAGACAACGGTCCCCAGGGCCTCCAGATGCTGGAAACGCCTCCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR GCA 90 bp | ACCCCACCCGAGCTTGAGTCCTGGCTTTGGGCCAAAAGCATCCCTGACGAGAATGGCAGGTCTGGTTCTTaGTGGGCTGCCAAACAGGGT | + |
|
Preference number: 4 (lower is better) Translates to: TPPELESWLWAKSIPDENGRSGS*WAAKQG Trigger: ACCCTGTTTGGCAGCCCAGCAAGAACCAGACCTGCC...ATTCTCGTCAGGGATGCTTTTGGCCCAAAGCCAGGACTCAAGCTCGGGTGGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR CCA 90 bp | TGTGTGTGTGTGCTGGCATGCCATGGCACAAGTATGGAGGTCAAGAAGGACTCTGCCCTTCGGTGGTCCTaGGCCCACTCCTCTGGATCG | + |
|
Preference number: 4 (lower is better) Translates to: CVCVLACHGTSMEVKKDSALRWS*AHSSGS Trigger: CGATCCAGAGGAGTGGGCCCAGGACCACCGAAGGGC...AGAGTCCTTCTTGACCTCCATACTTGTGCCATGGCATGCCAGCACACACACACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111884.8 |
||
| CDS-3UTR CCA 90 bp | GGAGCTGAAGAACCATCTGCACCAGGTGTTCAAGTTTTCGGAGAACAGCCTCCTGCCCTTCGGTGGTCCTaGGCCCACTCCTCTGGATCG | + |
|
Preference number: 4 (lower is better) Translates to: GAEEPSAPGVQVFGEQPPALRWS*AHSSGS Trigger: CGATCCAGAGGAGTGGGCCCAGGACCACCGAAGGGC...AGGAGGCTGTTCTCCGAAAACTTGAACACCTGGTGCAGATGGTTCTTCAGCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156356.2 |
||
| CDS-3UTR CCA 90 bp | GAGACACCGCTAGAGAGACAACATCTCAAGGACCCCAAACACCCTTCAGAGAAGGCAGAGGGGTCTCCCTaGGGCAAGGTGTGTGGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: ETPLERQHLKDPKHPSEKAEGSP*GKVCGC Trigger: GCAGCCACACACCTTGCCCCAGGGAGACCCCTCTGC...CTTCTCTGAAGGGTGTTTGGGGTCCTTGAGATGTTGTCTCTCTAGCGGTGTCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR CCA 90 bp | ACACCGCTAGAGAGACAACATCTCAAGGACCCCAAACACCCTTCAGAGAAGGCTGCAGAGGGGTCTCCCTaGGGCAAGGTGTGTGGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: TPLERQHLKDPKHPSEKAAEGSP*GKVCGC Trigger: GCAGCCACACACCTTGCCCCAGGGAGACCCCTCTGC...AGCCTTCTCTGAAGGGTGTTTGGGGTCCTTGAGATGTTGTCTCTCTAGCGGTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR CCA 90 bp | ACCCCACCCGAGCTTGAGTCCTGGCTTTGGGCCAAAAGCATCCCTGACGAGAATAGGTGGGTGAGTGAATaGGACCGCCTCTGTCCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: TPPELESWLWAKSIPDENRWVSE*DRLCPR Trigger: TCTGGGACAGAGGCGGTCCCATTCACTCACCCACCT...ATTCTCGTCAGGGATGCTTTTGGCCCAAAGCCAGGACTCAAGCTCGGGTGGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR CCA 90 bp | ACATCTCAAGGACCCCAAACACCCTTCAGAGAAGGCTGGGGACATCCTGAGCTTGGGAGCACTGGAAGCTaGATGACCCGTGCTGGGGAC | + |
|
Preference number: 4 (lower is better) Translates to: TSQGPQTPFREGWGHPELGSTGS*MTRAGD Trigger: GTCCCCAGCACGGGTCATCCAGCTTCCAGTGCTCCC...AAGCTCAGGATGTCCCCAGCCTTCTCTGAAGGGTGTTTGGGGTCCTTGAGATGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR TCA 90 bp | CAAACACCCTTCAGAGAAGGCTGGGGACATCCTGAGCTTGTGGGGACTAGGACACAACCCATCCTGGGATaGCATCTGGGAGCCTGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: QTPFREGWGHPELVGTRTQPILG*HLGACS Trigger: ACTGCAGGCTCCCAGATGTCATCCCAGGATGGGTTG...TGTCCTAGTCCCCACAAGCTCAGGATGTCCCCAGCCTTCTCTGAAGGGTGTTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR CCA 90 bp | GCCTGTGTGCCTGTGTGTACGTGTGTGTGTGTGCTGGCATGCCATGGCACAAGTACTCACAGTCTCTCTTaGCCAGAGAGCCCTTCGGTG | + |
|
Preference number: 4 (lower is better) Translates to: ACVPVCTCVCVLACHGTSTHSLS*PESPSV Trigger: CACCGAAGGGCTCTCTGGCCAAGAGAGACTGTGAGT...ACTTGTGCCATGGCATGCCAGCACACACACACACGTACACACAGGCACACAGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111884.8 |
||
| CDS-3UTR CCA 90 bp | ACATCTCAAGGACCCCAAACACCCTTCAGAGAAGGCTGGGGACATCCTGAGCTTAGCCTGCAGTCACTCTaGGCTCTGTCCTGGAGGGTC | + |
|
Preference number: 4 (lower is better) Translates to: TSQGPQTPFREGWGHPELSLQSL*ALSWRV Trigger: GACCCTCCAGGACAGAGCCCAGAGTGACTGCAGGCT...AAGCTCAGGATGTCCCCAGCCTTCTCTGAAGGGTGTTTGGGGTCCTTGAGATGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR CCA 90 bp | GCTAGAGAGACAACATCTCAAGGACCCCAAACACCCTTCAGAGAAGGCTGGGGATGGTCTGGGGAGCACTaGAAGCTGGATGACCCGTGC | + |
|
Preference number: 4 (lower is better) Translates to: ARETTSQGPQTPFREGWGWSGEH*KLDDPC Trigger: GCACGGGTCATCCAGCTTCCAGTGCTCCCCAGACCA...TCCCCAGCCTTCTCTGAAGGGTGTTTGGGGTCCTTGAGATGTTGTCTCTCTAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR GCA 90 bp | GAGACACCGCTAGAGAGACAACATCTCAAGGACCCCAAACACCCTTCAGAGAAGTGTAGCTGGTGGGACTaGGGTGCTGAAGGTGGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: ETPLERQHLKDPKHPSEKCSWWD*GAEGGG Trigger: CCCTCCACCTTCAGCACCGCAGTCCCACCAGCTACA...CTTCTCTGAAGGGTGTTTGGGGTCCTTGAGATGTTGTCTCTCTAGCGGTGTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR GCA 90 bp | ACATCTCAAGGACCCCAAACACCCTTCAGAGAAGGCTGGGGACATCCTGAGCTTAAGCTGGATGACCCGTaGTGGGGACAGTTAGGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: TSQGPQTPFREGWGHPELKLDDP*WGQLGG Trigger: CCCACCTAACTGTCCCCAGCACGGGTCATCCAGCTT...AAGCTCAGGATGTCCCCAGCCTTCTCTGAAGGGTGTTTGGGGTCCTTGAGATGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR CCA 90 bp | GCTAGAGAGACAACATCTCAAGGACCCCAAACACCCTTCAGAGAAGGCTGGGGACTGGTTGGGCAGGTCTaGTTCTTGCTGGGCTGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: ARETTSQGPQTPFREGWGLVGQV*FLLGCQ Trigger: TTGGCAGCCCAGCAAGAACCAGACCTGCCCAACCAG...TCCCCAGCCTTCTCTGAAGGGTGTTTGGGGTCCTTGAGATGTTGTCTCTCTAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR CCA 90 bp | CTGAAGAACCATCTGCACCAGGTGTTCAAGTTTTCGGAGAACAGCCTCCTCCGCCTGGTTGGGCAGGTCTaGTTCTTGCTGGGCTGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: LKNHLHQVFKFSENSLLRLVGQV*FLLGCQ Trigger: TTGGCAGCCCAGCAAGAACCAGACCTGCCCAACCAG...GCGGAGGAGGCTGTTCTCCGAAAACTTGAACACCTGGTGCAGATGGTTCTTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156356.2 |
||
| CDS-3UTR CCA 90 bp | GTGTGTGTGTGCTGGCATGCCATGGCACAAGTATGGAGGTCAAGAAGGACTCTCCCTTGGTGTGAGGTTTaGGGTGCTGCCCCTGGAAGA | + |
|
Preference number: 4 (lower is better) Translates to: VCVCWHAMAQVWRSRRTLPWCEV*GAAPGR Trigger: TCTTCCAGGGGCAGCACCCCAAACCTCACACCAAGG...GAGAGTCCTTCTTGACCTCCATACTTGTGCCATGGCATGCCAGCACACACACAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111884.8 |
||
| CDS-3UTR CCA 90 bp | ACACCGCTAGAGAGACAACATCTCAAGGACCCCAAACACCCTTCAGAGAAGGCTAGCCTGCAGTCACTCTaGGCTCTGTCCTGGAGGGTC | + |
|
Preference number: 4 (lower is better) Translates to: TPLERQHLKDPKHPSEKASLQSL*ALSWRV Trigger: GACCCTCCAGGACAGAGCCCAGAGTGACTGCAGGCT...AGCCTTCTCTGAAGGGTGTTTGGGGTCCTTGAGATGTTGTCTCTCTAGCGGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR CCA 90 bp | CAAACACCCTTCAGAGAAGGCTGGGGACATCCTGAGCTTGTGGGGACTAGGACATCCTGGGATGACATCTaGGAGCCTGCAGTCACTCTG | + |
|
Preference number: 4 (lower is better) Translates to: QTPFREGWGHPELVGTRTSWDDI*EPAVTL Trigger: CAGAGTGACTGCAGGCTCCCAGATGTCATCCCAGGA...TGTCCTAGTCCCCACAAGCTCAGGATGTCCCCAGCCTTCTCTGAAGGGTGTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR CCA 90 bp | ACCCCACCCGAGCTTGAGTCCTGGCTTTGGGCCAAAAGCATCCCTGACGAGAATACACACAACCCATCCTaGGATGACATCTGGGAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: TPPELESWLWAKSIPDENTHNPS*DDIWEP Trigger: AGGCTCCCAGATGTCATCCCAGGATGGGTTGTGTGT...ATTCTCGTCAGGGATGCTTTTGGCCCAAAGCCAGGACTCAAGCTCGGGTGGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| 3UTR CAA 72 bp | AAACACCCTTCAGAGAAGGCTGGGGACATCCTGAGCTaGTGGGGACTAGGACAATATGGCCCATCCTCACCG | + |
|
Preference number: 4 (lower is better) Translates to: KHPSEKAGDILS*WGLGQYGPSSP Trigger: CGGTGAGGATGGGCCATATTGTCCTAGTCCCCACAAGCTCAGGATGTCCCCAGCCTTCTCTGAAGGGTGTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR GCA 90 bp | CAAACACCCTTCAGAGAAGGCTGGGGACATCCTGAGCTTGTGGGGACTAGGACATGGTTCTTGCTGGGCTaGCAAACAGGGTCTCATCCA | + |
|
Preference number: 4 (lower is better) Translates to: QTPFREGWGHPELVGTRTWFLLG*QTGSHP Trigger: TGGATGAGACCCTGTTTGGCAGCCCAGCAAGAACCA...TGTCCTAGTCCCCACAAGCTCAGGATGTCCCCAGCCTTCTCTGAAGGGTGTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR GCA 90 bp | TGTACGTGTGTGTGTGTGCTGGCATGCCATGGCACAAGTATGGAGGTCAAGAAGGGCAGGTCTGGTTCTTaGTGGGCTGCCAAACAGGGT | + |
|
Preference number: 4 (lower is better) Translates to: CTCVCVLACHGTSMEVKKGRSGS*WAAKQG Trigger: ACCCTGTTTGGCAGCCCAGCAAGAACCAGACCTGCC...CTTCTTGACCTCCATACTTGTGCCATGGCATGCCAGCACACACACACACGTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111884.8 |
||
| CDS-3UTR GCA 90 bp | GAGACACCGCTAGAGAGACAACATCTCAAGGACCCCAAACACCCTTCAGAGAAGAAGCTGGATGACCCGTaGTGGGGACAGTTAGGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: ETPLERQHLKDPKHPSEKKLDDP*WGQLGG Trigger: CCCACCTAACTGTCCCCAGCACGGGTCATCCAGCTT...CTTCTCTGAAGGGTGTTTGGGGTCCTTGAGATGTTGTCTCTCTAGCGGTGTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR CCA 90 bp | CAAACACCCTTCAGAGAAGGCTGGGGACATCCTGAGCTTGTGGGGACTAGGACAGGGTCAAAGTCTGGTTaGGCAGGTCTGGTTCTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: QTPFREGWGHPELVGTRTGSKSG*AGLVLA Trigger: AGCAAGAACCAGACCTGCCCAACCAGACTTTGACCC...TGTCCTAGTCCCCACAAGCTCAGGATGTCCCCAGCCTTCTCTGAAGGGTGTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR CCA 90 bp | GAGACACCGCTAGAGAGACAACATCTCAAGGACCCCAAACACCCTTCAGAGAAGCCTTGGTGTGAGGTTTaGGGTGCTGCCCCTGGAAGA | + |
|
Preference number: 4 (lower is better) Translates to: ETPLERQHLKDPKHPSEKPWCEV*GAAPGR Trigger: TCTTCCAGGGGCAGCACCCCAAACCTCACACCAAGG...CTTCTCTGAAGGGTGTTTGGGGTCCTTGAGATGTTGTCTCTCTAGCGGTGTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR CCA 90 bp | ACACCGCTAGAGAGACAACATCTCAAGGACCCCAAACACCCTTCAGAGAAGGCTAGGTGGGTGAGTGAATaGGACCGCCTCTGTCCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: TPLERQHLKDPKHPSEKARWVSE*DRLCPR Trigger: TCTGGGACAGAGGCGGTCCCATTCACTCACCCACCT...AGCCTTCTCTGAAGGGTGTTTGGGGTCCTTGAGATGTTGTCTCTCTAGCGGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR CCA 90 bp | GGAGCTGAAGAACCATCTGCACCAGGTGTTCAAGTTTTCGGAGAACAGCCTCCTACTCACAGTCTCTCTTaGCCAGAGAGCCCTTCGGTG | + |
|
Preference number: 4 (lower is better) Translates to: GAEEPSAPGVQVFGEQPPTHSLS*PESPSV Trigger: CACCGAAGGGCTCTCTGGCCAAGAGAGACTGTGAGT...AGGAGGCTGTTCTCCGAAAACTTGAACACCTGGTGCAGATGGTTCTTCAGCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156356.2 |
||
| CDS-3UTR CCA 90 bp | ACACCGCTAGAGAGACAACATCTCAAGGACCCCAAACACCCTTCAGAGAAGGCTCTCATCGCAGTAGGATaGGGCATGGCCAATCAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: TPLERQHLKDPKHPSEKALIAVG*GMANQP Trigger: AGGCTGATTGGCCATGCCCCATCCTACTGCGATGAG...AGCCTTCTCTGAAGGGTGTTTGGGGTCCTTGAGATGTTGTCTCTCTAGCGGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR CCA 90 bp | CTAGAGAGACAACATCTCAAGGACCCCAAACACCCTTCAGAGAAGGCTGGGGACACACACAACCCATCCTaGGATGACATCTGGGAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: LERQHLKDPKHPSEKAGDTHNPS*DDIWEP Trigger: AGGCTCCCAGATGTCATCCCAGGATGGGTTGTGTGT...GTCCCCAGCCTTCTCTGAAGGGTGTTTGGGGTCCTTGAGATGTTGTCTCTCTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR GCA 90 bp | CTTAAGATAAAGTCAGTAGGAGTAGGAGTAGCATTGTGTGTGCCTGTGTGCCTGTGTAGCTGGTGGGACTaGGGTGCTGAAGGTGGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: LKIKSVGVGVALCVPVCLCSWWD*GAEGGG Trigger: CCCTCCACCTTCAGCACCGCAGTCCCACCAGCTACA...CAGGCACACAGGCACACACAATGCTACTCCTACTCCTACTGACTTTATCTTAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111884.8 |
||
| CDS-3UTR GCA 90 bp | TGTGTGTGTGCTGGCATGCCATGGCACAAGTATGGAGGTCAAGAAGGACTCTCACTCATCCACATAGGATaGCCTGGCCTTGACCCTGTA | + |
|
Preference number: 4 (lower is better) Translates to: CVCAGMPWHKYGGQEGLSLIHIG*PGLDPV Trigger: TACAGGGTCAAGGCCAGGGCATCCTATGTGGATGAG...TGAGAGTCCTTCTTGACCTCCATACTTGTGCCATGGCATGCCAGCACACACACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111884.8 |
||
| CDS-3UTR GCA 90 bp | TGTGTGTGTGCTGGCATGCCATGGCACAAGTATGGAGGTCAAGAAGGACTCTCATGGTTCTTGCTGGGCTaGCAAACAGGGTCTCATCCA | + |
|
Preference number: 4 (lower is better) Translates to: CVCAGMPWHKYGGQEGLSWFLLG*QTGSHP Trigger: TGGATGAGACCCTGTTTGGCAGCCCAGCAAGAACCA...TGAGAGTCCTTCTTGACCTCCATACTTGTGCCATGGCATGCCAGCACACACACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111884.8 |
||
| CDS-3UTR CCA 90 bp | CTTAAGATAAAGTCAGTAGGAGTAGGAGTAGCATTGTGTGTGCCTGTGTGCCTGCTGGTTGGGCAGGTCTaGTTCTTGCTGGGCTGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: LKIKSVGVGVALCVPVCLLVGQV*FLLGCQ Trigger: TTGGCAGCCCAGCAAGAACCAGACCTGCCCAACCAG...CAGGCACACAGGCACACACAATGCTACTCCTACTCCTACTGACTTTATCTTAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111884.8 |
||
| CDS-3UTR CCA 90 bp | CAAACACCCTTCAGAGAAGGCTGGGGACATCCTGAGCTTGTGGGGACTAGGACATTTGTTTTTCTTCCTTaGTGTGAGGTTTGGGGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: QTPFREGWGHPELVGTRTFVFLP*CEVWGA Trigger: AGCACCCCAAACCTCACACCAAGGAAGAAAAACAAA...TGTCCTAGTCCCCACAAGCTCAGGATGTCCCCAGCCTTCTCTGAAGGGTGTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR CCA 90 bp | AAGACGCAGCAAGATATCCTGGCGCTTCGGGCACAGTACCACAACCTGGTCCATTTTGTTTTTCTTCCTTaGTGTGAGGTTTGGGGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: KTQQDILALRAQYHNLVHFVFLP*CEVWGA Trigger: AGCACCCCAAACCTCACACCAAGGAAGAAAAACAAA...ATGGACCAGGTTGTGGTACTGTGCCCGAAGCGCCAGGATATCTTGCTGCGTCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000156356.2 |
||
| CDS-3UTR CCA 90 bp | TGTCTCTATAGGACCCCACCCGAGCTTGAGTCCTGGCTTTGGGCCAAAAGCATCTTTGTTTTTCTTCCTTaGTGTGAGGTTTGGGGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: CLYRTPPELESWLWAKSIFVFLP*CEVWGA Trigger: AGCACCCCAAACCTCACACCAAGGAAGAAAAACAAA...GATGCTTTTGGCCCAAAGCCAGGACTCAAGCTCGGGTGGGGTCCTATAGAGACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
||
| CDS-3UTR GCA 90 bp | GAACTTTGTGATCCAGGAGCTGAAGAACCATCTGCACCAGGTGTTCAAGTTTTCTGGTTCTTGCTGGGCTaGCAAACAGGGTCTCATCCA | + |
|
Preference number: 4 (lower is better) Translates to: ELCDPGAEEPSAPGVQVFWFLLG*QTGSHP Trigger: TGGATGAGACCCTGTTTGGCAGCCCAGCAAGAACCA...GAAAACTTGAACACCTGGTGCAGATGGTTCTTCAGCTCCTGGATCACAAAGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156356.2 |
||
| CDS-3UTR CCA 90 bp | TGTACGTGTGTGTGTGTGCTGGCATGCCATGGCACAAGTATGGAGGTCAAGAAGTTTGTTTTTCTTCCTTaGTGTGAGGTTTGGGGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: CTCVCVLACHGTSMEVKKFVFLP*CEVWGA Trigger: AGCACCCCAAACCTCACACCAAGGAAGAAAAACAAA...CTTCTTGACCTCCATACTTGTGCCATGGCATGCCAGCACACACACACACGTACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111884.8 |
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| CDS TCA 90 bp | GAGCCTGCAGTCACTCTGGGCTCTGTCCTGGAGGGTCCAGCTGGGTaGATGGCTCGCAGAGGGGTCTCCCTGGGGCAAGGTGTGTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: EPAVTLGSVLEGPAG*MARRGVSLGQGVWL Trigger: CAGCCACACACCTTGCCCCAGGGAGACCCCTCTGCGAGCCATTCACCCAGCTGGACCCTCCAGGACAGAGCCCAGAGTGACTGCAGGCTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR CAA 90 bp | GCTGGGTGGGGCTTGGCACCGATGCAGAAGGCGGCTGAGACACCGCTAGAGAGAGGGCAGGTCTGGTTCTaGCTGGGCTGCCAAACAGGG | + |
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Preference number: 5 (lower is better) Translates to: AGWGLAPMQKAAETPLERGQVWF*LGCQTG Trigger: CCCTGTTTGGCAGCCCAGCAAGAACCAGACCTGCCC...TCTCTCTAGCGGTGTCTCAGCCGCCTTCTGCATCGGTGCCAAGCCCCACCCAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR CAA 90 bp | CCGTGGAGGCGTTTCCAGCATCTGGAGGCCCTGGGGACCGTTGTCTCTATAGGAAAAGGGTCCGGAGCTTaGCAGCATCCCCCACGGCCA | + |
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Preference number: 5 (lower is better) Translates to: PWRRFQHLEALGTVVSIGKGSGA*QHPPRP Trigger: TGGCCGTGGGGGATGCTGCAAAGCTCCGGACCCTTT...TCCTATAGAGACAACGGTCCCCAGGGCCTCCAGATGCTGGAAACGCCTCCACGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS TCA 90 bp | CTGGGCTGCCAAACAGGGTCTCATCCACATAGGATGCCCTGGCCTTaGCCCTGTAGCTGGTGGGACTGCGGTGCTGAAGGTGGAGGGCTT | + |
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Preference number: 5 (lower is better) Translates to: LGCQTGSHPHRMPWP*PCSWWDCGAEGGGL Trigger: AAGCCCTCCACCTTCAGCACCGCAGTCCCACCAGCTACAGGGTCAAGGCCAGGGCATCCTATGTGGATGAGACCCTGTTTGGCAGCCCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000031599.9 ENSMUST00000111884.8 ENSMUST00000140554.2 ENSMUST00000177800.8 |
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| CDS CCA 90 bp | TGGGACCGCCTCTGTCCCAGAGAGCAGGGAACACACAACCCATCCTaGGATGACATCTGGGAGCCTGCAGTCACTCTGGGCTCTGTCCTG | + |
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Preference number: 5 (lower is better) Translates to: WDRLCPREQGTHNPS*DDIWEPAVTLGSVL Trigger: CAGGACAGAGCCCAGAGTGACTGCAGGCTCCCAGATGTCATCCCAGGATGGGTTGTGTGTTCCCTGCTCTCTGGGACAGAGGCGGTCCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS TCA 90 bp | GAGCACTGGAAGCTGGATGACCCGTGCTGGGGACAGTTAGGTGGGTaGGTGAATGGGACCGCCTCTGTCCCAGAGAGCAGGGAACACACA | + |
|
Preference number: 5 (lower is better) Translates to: EHWKLDDPCWGQLGG*VNGTASVPESREHT Trigger: TGTGTGTTCCCTGCTCTCTGGGACAGAGGCGGTCCCATTCACTCACCCACCTAACTGTCCCCAGCACGGGTCATCCAGCTTCCAGTGCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS GCA 90 bp | CTGCACCCAGGGTGGGTCAAAGTCTGGTTGGGCAGGTCTGGTTCTTaGTGGGCTGCCAAACAGGGTCTCATCCACATAGGATGCCCTGGC | + |
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Preference number: 5 (lower is better) Translates to: LHPGWVKVWLGRSGS*WAAKQGLIHIGCPG Trigger: GCCAGGGCATCCTATGTGGATGAGACCCTGTTTGGCAGCCCAGCAAGAACCAGACCTGCCCAACCAGACTTTGACCCACCCTGGGTGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000031599.9 ENSMUST00000111884.8 ENSMUST00000140554.2 ENSMUST00000156356.2 ENSMUST00000177800.8 |
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| CDS CCA 90 bp | TCCTGGGCCCACTCCTCTGGATCGGTTACAATTCTGCACCCAGGGTaGGTCAAAGTCTGGTTGGGCAGGTCTGGTTCTTGCTGGGCTGCC | + |
|
Preference number: 5 (lower is better) Translates to: SWAHSSGSVTILHPG*VKVWLGRSGSCWAA Trigger: GGCAGCCCAGCAAGAACCAGACCTGCCCAACCAGACTTTGACCCACCCTGGGTGCAGAATTGTAACCGATCCAGAGGAGTGGGCCCAGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000031599.9 ENSMUST00000111884.8 ENSMUST00000140554.2 ENSMUST00000156356.2 ENSMUST00000177800.8 |
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| CDS CCA 90 bp | TGTCCCAGAGAGCAGGGAACACACAACCCATCCTGGGATGACATCTaGGAGCCTGCAGTCACTCTGGGCTCTGTCCTGGAGGGTCCAGCT | + |
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Preference number: 5 (lower is better) Translates to: CPREQGTHNPSWDDI*EPAVTLGSVLEGPA Trigger: AGCTGGACCCTCCAGGACAGAGCCCAGAGTGACTGCAGGCTCCCAGATGTCATCCCAGGATGGGTTGTGTGTTCCCTGCTCTCTGGGACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR CAA 90 bp | ACCCCACCCGAGCTTGAGTCCTGGCTTTGGGCCAAAAGCATCCCTGACGAGAATAAAGGGTCCGGAGCTTaGCAGCATCCCCCACGGCCA | + |
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Preference number: 5 (lower is better) Translates to: TPPELESWLWAKSIPDENKGSGA*QHPPRP Trigger: TGGCCGTGGGGGATGCTGCAAAGCTCCGGACCCTTT...ATTCTCGTCAGGGATGCTTTTGGCCCAAAGCCAGGACTCAAGCTCGGGTGGGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS CCA 90 bp | CACCCAGGGTGGGTCAAAGTCTGGTTGGGCAGGTCTGGTTCTTGCTaGGCTGCCAAACAGGGTCTCATCCACATAGGATGCCCTGGCCTT | + |
|
Preference number: 5 (lower is better) Translates to: HPGWVKVWLGRSGSC*AAKQGLIHIGCPGL Trigger: AAGGCCAGGGCATCCTATGTGGATGAGACCCTGTTTGGCAGCCCAGCAAGAACCAGACCTGCCCAACCAGACTTTGACCCACCCTGGGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000031599.9 ENSMUST00000111884.8 ENSMUST00000140554.2 ENSMUST00000156356.2 ENSMUST00000177800.8 |
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| CDS CCA 90 bp | CTCTCTTGGCCAGAGAGCCCTTCGGTGGTCCTGGGCCCACTCCTCTaGATCGGTTACAATTCTGCACCCAGGGTGGGTCAAAGTCTGGTT | + |
|
Preference number: 5 (lower is better) Translates to: LSWPESPSVVLGPLL*IGYNSAPRVGQSLV Trigger: AACCAGACTTTGACCCACCCTGGGTGCAGAATTGTAACCGATCCAGAGGAGTGGGCCCAGGACCACCGAAGGGCTCTCTGGCCAAGAGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000031599.9 ENSMUST00000111884.8 ENSMUST00000140554.2 ENSMUST00000156356.2 ENSMUST00000177800.8 |
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| CDS-3UTR CAA 90 bp | CAAACACCCTTCAGAGAAGGCTGGGGACATCCTGAGCTTGTGGGGACTAGGACAGGGCAGGTCTGGTTCTaGCTGGGCTGCCAAACAGGG | + |
|
Preference number: 5 (lower is better) Translates to: QTPFREGWGHPELVGTRTGQVWF*LGCQTG Trigger: CCCTGTTTGGCAGCCCAGCAAGAACCAGACCTGCCC...TGTCCTAGTCCCCACAAGCTCAGGATGTCCCCAGCCTTCTCTGAAGGGTGTTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS-3UTR CAA 90 bp | GGCCCTGTCCTCATTCGTCCTGGCCTAGGTGGAGAAGGAGAACTTTGTGATCCAGGGCAGGTCTGGTTCTaGCTGGGCTGCCAAACAGGG | + |
|
Preference number: 5 (lower is better) Translates to: GPVLIRPGLGGEGELCDPGQVWF*LGCQTG Trigger: CCCTGTTTGGCAGCCCAGCAAGAACCAGACCTGCCC...TGGATCACAAAGTTCTCCTTCTCCACCTAGGCCAGGACGAATGAGGACAGGGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156356.2 |
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| CDS-3UTR CAA 90 bp | GTACGTGTGTGTGTGTGCTGGCATGCCATGGCACAAGTATGGAGGTCAAGAAGGGGGCAGGTCTGGTTCTaGCTGGGCTGCCAAACAGGG | + |
|
Preference number: 5 (lower is better) Translates to: VRVCVCWHAMAQVWRSRRGQVWF*LGCQTG Trigger: CCCTGTTTGGCAGCCCAGCAAGAACCAGACCTGCCC...CCTTCTTGACCTCCATACTTGTGCCATGGCATGCCAGCACACACACACACGTAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111884.8 |
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| CDS CCA 90 bp | TACAATTCTGCACCCAGGGTGGGTCAAAGTCTGGTTGGGCAGGTCTaGTTCTTGCTGGGCTGCCAAACAGGGTCTCATCCACATAGGATG | + |
|
Preference number: 5 (lower is better) Translates to: YNSAPRVGQSLVGQV*FLLGCQTGSHPHRM Trigger: CATCCTATGTGGATGAGACCCTGTTTGGCAGCCCAGCAAGAACCAGACCTGCCCAACCAGACTTTGACCCACCCTGGGTGCAGAATTGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000031599.9 ENSMUST00000111884.8 ENSMUST00000140554.2 ENSMUST00000156356.2 ENSMUST00000177800.8 |
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| CDS-3UTR CAA 90 bp | GAGACACCGCTAGAGAGACAACATCTCAAGGACCCCAAACACCCTTCAGAGAAGCCAATCAGCCTGTATTaGTTTTTCTTCCTTGGTGTG | + |
|
Preference number: 5 (lower is better) Translates to: ETPLERQHLKDPKHPSEKPISLY*FFFLGV Trigger: CACACCAAGGAAGAAAAACAAATACAGGCTGATTGG...CTTCTCTGAAGGGTGTTTGGGGTCCTTGAGATGTTGTCTCTCTAGCGGTGTCTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS TCA 72 bp | GTCACTCTGGGCTCTGTCCTGGAGGGTCCAGCTGGGTaGATGGCTCGCAGAGGGGTCTCCCTGGGGCAAGGT | + |
|
Preference number: 6 (lower is better) Translates to: VTLGSVLEGPAG*MARRGVSLGQG Trigger: ACCTTGCCCCAGGGAGACCCCTCTGCGAGCCATTCACCCAGCTGGACCCTCCAGGACAGAGCCCAGAGTGAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS CCA 72 bp | TGCTGCCCCTGGAAGAGGGGGACTCACAGTCTCTCTTaGCCAGAGAGCCCTTCGGTGGTCCTGGGCCCACTC | + |
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Preference number: 6 (lower is better) Translates to: CCPWKRGTHSLS*PESPSVVLGPL Trigger: GAGTGGGCCCAGGACCACCGAAGGGCTCTCTGGCCAAGAGAGACTGTGAGTCCCCCTCTTCCAGGGGCAGCA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000031599.9 ENSMUST00000111884.8 ENSMUST00000140554.2 ENSMUST00000156356.2 ENSMUST00000177800.8 |
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| CDS CAA 72 bp | GTGCTGCCCCTGGAAGAGGGGGACTCACAGTCTCTCTaGGCCAGAGAGCCCTTCGGTGGTCCTGGGCCCACT | + |
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Preference number: 6 (lower is better) Translates to: VLPLEEGDSQSL*AREPFGGPGPT Trigger: AGTGGGCCCAGGACCACCGAAGGGCTCTCTGGCCAAGAGAGACTGTGAGTCCCCCTCTTCCAGGGGCAGCAC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000031599.9 ENSMUST00000111884.8 ENSMUST00000140554.2 ENSMUST00000156356.2 ENSMUST00000177800.8 |
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| CDS TCA 72 bp | AAGCTGGATGACCCGTGCTGGGGACAGTTAGGTGGGTaGGTGAATGGGACCGCCTCTGTCCCAGAGAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: KLDDPCWGQLGG*VNGTASVPESR Trigger: CCTGCTCTCTGGGACAGAGGCGGTCCCATTCACTCACCCACCTAACTGTCCCCAGCACGGGTCATCCAGCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS CCA 72 bp | CCAGAGAGCCCTTCGGTGGTCCTGGGCCCACTCCTCTaGATCGGTTACAATTCTGCACCCAGGGTGGGTCAA | + |
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Preference number: 6 (lower is better) Translates to: PESPSVVLGPLL*IGYNSAPRVGQ Trigger: TTGACCCACCCTGGGTGCAGAATTGTAACCGATCCAGAGGAGTGGGCCCAGGACCACCGAAGGGCTCTCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000031599.9 ENSMUST00000111884.8 ENSMUST00000140554.2 ENSMUST00000156356.2 ENSMUST00000177800.8 |
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| CDS TCA 72 bp | CAAGGCCCATTGGTCTGGGGAGCACTGGAAGCTGGATaGCCCGTGCTGGGGACAGTTAGGTGGGTGAGTGAA | + |
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Preference number: 6 (lower is better) Translates to: QGPLVWGALEAG*PVLGTVRWVSE Trigger: TTCACTCACCCACCTAACTGTCCCCAGCACGGGTCATCCAGCTTCCAGTGCTCCCCAGACCAATGGGCCTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS GCA 72 bp | GGTCCTGGGCCCACTCCTCTGGATCGGTTACAATTCTaGACCCAGGGTGGGTCAAAGTCTGGTTGGGCAGGT | + |
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Preference number: 6 (lower is better) Translates to: GPGPTPLDRLQF*TQGGSKSGWAG Trigger: ACCTGCCCAACCAGACTTTGACCCACCCTGGGTGCAGAATTGTAACCGATCCAGAGGAGTGGGCCCAGGACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000031599.9 ENSMUST00000111884.8 ENSMUST00000140554.2 ENSMUST00000156356.2 ENSMUST00000177800.8 |
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| CDS CCA 72 bp | GAGCAGGGAACACACAACCCATCCTGGGATGACATCTaGGAGCCTGCAGTCACTCTGGGCTCTGTCCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: EQGTHNPSWDDI*EPAVTLGSVLE Trigger: CTCCAGGACAGAGCCCAGAGTGACTGCAGGCTCCCAGATGTCATCCCAGGATGGGTTGTGTGTTCCCTGCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS CCA 72 bp | CTCTGTCCCAGAGAGCAGGGAACACACAACCCATCCTaGGATGACATCTGGGAGCCTGCAGTCACTCTGGGC | + |
|
Preference number: 6 (lower is better) Translates to: LCPREQGTHNPS*DDIWEPAVTLG Trigger: GCCCAGAGTGACTGCAGGCTCCCAGATGTCATCCCAGGATGGGTTGTGTGTTCCCTGCTCTCTGGGACAGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS TCA 72 bp | CAAACAGGGTCTCATCCACATAGGATGCCCTGGCCTTaGCCCTGTAGCTGGTGGGACTGCGGTGCTGAAGGT | + |
|
Preference number: 6 (lower is better) Translates to: QTGSHPHRMPWP*PCSWWDCGAEG Trigger: ACCTTCAGCACCGCAGTCCCACCAGCTACAGGGTCAAGGCCAGGGCATCCTATGTGGATGAGACCCTGTTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000031599.9 ENSMUST00000111884.8 ENSMUST00000140554.2 ENSMUST00000156356.2 ENSMUST00000177800.8 |
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| CDS TCA 72 bp | TCCCAGAGAGCAGGGAACACACAACCCATCCTGGGATaGCATCTGGGAGCCTGCAGTCACTCTGGGCTCTGT | + |
|
Preference number: 6 (lower is better) Translates to: SQRAGNTQPILG*HLGACSHSGLC Trigger: ACAGAGCCCAGAGTGACTGCAGGCTCCCAGATGTCATCCCAGGATGGGTTGTGTGTTCCCTGCTCTCTGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031599.9 ENSMUST00000177800.8 |
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| CDS CCA 72 bp | ACAGTCTCTCTTGGCCAGAGAGCCCTTCGGTGGTCCTaGGCCCACTCCTCTGGATCGGTTACAATTCTGCAC | + |
|
Preference number: 6 (lower is better) Translates to: TVSLGQRALRWS*AHSSGSVTILH Trigger: GTGCAGAATTGTAACCGATCCAGAGGAGTGGGCCCAGGACCACCGAAGGGCTCTCTGGCCAAGAGAGACTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000031599.9 ENSMUST00000111884.8 ENSMUST00000140554.2 ENSMUST00000156356.2 ENSMUST00000177800.8 |
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| CDS CCA 72 bp | GGACTCACAGTCTCTCTTGGCCAGAGAGCCCTTCGGTaGTCCTGGGCCCACTCCTCTGGATCGGTTACAATT | + |
|
Preference number: 6 (lower is better) Translates to: GLTVSLGQRALR*SWAHSSGSVTI Trigger: AATTGTAACCGATCCAGAGGAGTGGGCCCAGGACCACCGAAGGGCTCTCTGGCCAAGAGAGACTGTGAGTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000031599.9 ENSMUST00000111884.8 ENSMUST00000140554.2 ENSMUST00000156356.2 ENSMUST00000177800.8 |
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| CDS CCA 72 bp | TCGGTTACAATTCTGCACCCAGGGTGGGTCAAAGTCTaGTTGGGCAGGTCTGGTTCTTGCTGGGCTGCCAAA | + |
|
Preference number: 6 (lower is better) Translates to: SVTILHPGWVKV*LGRSGSCWAAK Trigger: TTTGGCAGCCCAGCAAGAACCAGACCTGCCCAACCAGACTTTGACCCACCCTGGGTGCAGAATTGTAACCGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000031599.9 ENSMUST00000111884.8 ENSMUST00000140554.2 ENSMUST00000156356.2 ENSMUST00000177800.8 |
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| CDS CCA 72 bp | CACTCCTCTGGATCGGTTACAATTCTGCACCCAGGGTaGGTCAAAGTCTGGTTGGGCAGGTCTGGTTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: HSSGSVTILHPG*VKVWLGRSGSC Trigger: GCAAGAACCAGACCTGCCCAACCAGACTTTGACCCACCCTGGGTGCAGAATTGTAACCGATCCAGAGGAGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000031599.9 ENSMUST00000111884.8 ENSMUST00000140554.2 ENSMUST00000156356.2 ENSMUST00000177800.8 |
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