Pregenerated sensors for RIT2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057455Ensembl transcript IDs: ENSMUST00000082070.13, ENSMUST00000139924.2, ENSMUST00000153060.8
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCCTCTTCAATTTCCTTTCCACCAAGGACAGCATGGATTCCTTCCTaGGAATTTCTCTCACTAAGCCTTGAAAAGCATCATCGATACCGA | + |
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Preference number: 1 (lower is better) Translates to: SSSISFPPRTAWIPS*EFLSLSLEKHHRYR Trigger: TCGGTATCGATGATGCTTTTCAAGGCTTAGTGAGAGAAATTCGCAGGAAGGAATCCATGCTGTCCTTGGTGGAAAGGAAATTGAAGAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082070.13 |
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| 3UTR GCA 90 bp | CCTCTAAACTATTCCAGCCTCTTCATTATTTACAGATTTGTGAAATaGAAACAACCAGGGTTATCAGGCAAAAGCAGATCCCCTAAGCCT | + |
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Preference number: 1 (lower is better) Translates to: PLNYSSLFIIYRFVK*KQPGLSGKSRSPKP Trigger: AGGCTTAGGGGATCTGCTTTTGCCTGATAACCCTGGTTGTTTGCATTTCACAAATCTGTAAATAATGAAGAGGCTGGAATAGTTTAGAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000082070.13 ENSMUST00000153060.8 |
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| 3UTR TCA 90 bp | AAAGAAAAAGAGATGGAGAGAGAAAGAGAGAGTGAGATGGAGATATaGACAATTGTCTGGTTGATAAAACCCACAAGGAGAGACAGGAAG | + |
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Preference number: 1 (lower is better) Translates to: KEKEMERERESEMEI*TIVWLIKPTRRDRK Trigger: CTTCCTGTCTCTCCTTGTGGGTTTTATCAACCAGACAATTGTTCATATCTCCATCTCACTCTCTCTTTCTCTCTCCATCTCTTTTTCTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000082070.13 ENSMUST00000153060.8 |
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| 3UTR CCA 90 bp | GCCCAAATCATCACATTAAGGAAGCATACTGCTCACAGATGTACATaGTCGTTATCCACATCTTCTTCAGTTAACAGTGTAGCTGATTTT | + |
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Preference number: 1 (lower is better) Translates to: AQIITLRKHTAHRCT*SLSTSSSVNSVADF Trigger: AAAATCAGCTACACTGTTAACTGAAGAAGATGTGGATAACGACCATGTACATCTGTGAGCAGTATGCTTCCTTAATGTGATGATTTGGGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| 3UTR CCA 90 bp | ATTGCTGAAATGTTAGCTAAGAAACATCCTGAAATCCTGATAAAGTaGGTAAAAGGCAGTTATCAAAGTAACCAGCATATCACAGTTAGC | + |
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Preference number: 1 (lower is better) Translates to: IAEMLAKKHPEILIK*VKGSYQSNQHITVS Trigger: GCTAACTGTGATATGCTGGTTACTTTGATAACTGCCTTTTACCCACTTTATCAGGATTTCAGGATGTTTCTTAGCTAACATTTCAGCAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| 3UTR-3UTR TCA 90 bp | GATAAAACCCACAAGGAGAGACAGGAAGGATGCGGAAGCAAAGCCTCACAACATTCTCTCACTAAGCCTTaGAAAGCATCATCGATACCG | + |
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Preference number: 2 (lower is better) Translates to: DKTHKERQEGCGSKASQHSLTKP*KASSIP Trigger: CGGTATCGATGATGCTTTTCAAGGCTTAGTGAGAGA...ATGTTGTGAGGCTTTGCTTCCGCATCCTTCCTGTCTCTCCTTGTGGGTTTTATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082070.13 |
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| 3UTR-3UTR TCA 90 bp | ATTTGTGTGTGTGTGTCGGGGGCATGTTTTGAAATTGCCTTCTCTTGTTCTAAATTAGGCCTCCTGCACTaGCCTCAGGATGCAATGAGG | + |
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Preference number: 2 (lower is better) Translates to: ICVCVSGACFEIAFSCSKLGLLH*PQDAMR Trigger: CCTCATTGCATCCTGAGGTCAGTGCAGGAGGCCTAA...TTTAGAACAAGAGAAGGCAATTTCAAAACATGCCCCCGACACACACACACAAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| 3UTR-3UTR TCA 90 bp | GCTCACAGATGTACATGGTCGTTATCCACATCTTCTTCAGTTAACAGTGTAGCTTCTACAACAGTGGGATaGGTCTCAGGAAAAAGGCCC | + |
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Preference number: 2 (lower is better) Translates to: AHRCTWSLSTSSSVNSVASTTVG*VSGKRP Trigger: GGGCCTTTTTCCTGAGACTCATCCCACTGTTGTAGA...AGCTACACTGTTAACTGAAGAAGATGTGGATAACGACCATGTACATCTGTGAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| 3UTR-3UTR GCA 90 bp | AACTCAGAATCTTGGAGAAGATGGGCAAAGACTCTACTAAAATTGAGTAGTCCCGCACTGACCTCAGGATaGAATGAGGGTTGTCTTAAT | + |
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Preference number: 2 (lower is better) Translates to: NSESWRRWAKTLLKLSSPALTSG*NEGCLN Trigger: ATTAAGACAACCCTCATTGCATCCTGAGGTCAGTGC...GGGACTACTCAATTTTAGTAGAGTCTTTGCCCATCTTCTCCAAGATTCTGAGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| 3UTR-3UTR TCA 90 bp | GTAAAAGGCAGTTATCAAAGTAACCAGCATATCACAGTTAGCTCTAACAGCATCCCTAAATCCTCTCTGTaGGCATTAGCCACAAACACA | + |
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Preference number: 2 (lower is better) Translates to: VKGSYQSNQHITVSSNSIPKSSL*ALATNT Trigger: TGTGTTTGTGGCTAATGCTCACAGAGAGGATTTAGG...GATGCTGTTAGAGCTAACTGTGATATGCTGGTTACTTTGATAACTGCCTTTTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| 3UTR-3UTR TCA 90 bp | AAGGAAGCATACTGCTCACAGATGTACATGGTCGTTATCCACATCTTCTTCAGTTCAGCATCTAAGCTATaGCAAGAACTATCAACACAC | + |
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Preference number: 2 (lower is better) Translates to: KEAYCSQMYMVVIHIFFSSASKL*QELSTH Trigger: GTGTGTTGATAGTTCTTGTCATAGCTTAGATGCTGA...ACTGAAGAAGATGTGGATAACGACCATGTACATCTGTGAGCAGTATGCTTCCTT 41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| 3UTR-3UTR GCA 90 bp | AACTCAGAATCTTGGAGAAGATGGGCAAAGACTCTACTAAAATTGAGTAGTCCCTTAATAGGAGAATTATaGATCAGTCAAGCCAGCAGT | + |
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Preference number: 2 (lower is better) Translates to: NSESWRRWAKTLLKLSSPLIGEL*ISQASS Trigger: ACTGCTGGCTTGACTGATGCATAATTCTCCTATTAA...GGGACTACTCAATTTTAGTAGAGTCTTTGCCCATCTTCTCCAAGATTCTGAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| 3UTR-3UTR CCA 90 bp | GTAAAAGGCAGTTATCAAAGTAACCAGCATATCACAGTTAGCTCTAACAGCATCATTTTATGTCCATTTTaGGGCACTTCTAGCTCAAAT | + |
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Preference number: 2 (lower is better) Translates to: VKGSYQSNQHITVSSNSIILCPF*GTSSSN Trigger: ATTTGAGCTAGAAGTGCCCCAAAATGGACATAAAAT...GATGCTGTTAGAGCTAACTGTGATATGCTGGTTACTTTGATAACTGCCTTTTAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| 3UTR-3UTR CAA 90 bp | CCCACAAGGAGAGACAGGAAGGATGCGGAAGCAAAGCCTCACAACATGTTTTCTTGGAAAATAAGCTCCTaGAACTTGGCAGCCTCCTGG | + |
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Preference number: 3 (lower is better) Translates to: PTRRDRKDAEAKPHNMFSWKISS*NLAASW Trigger: CCAGGAGGCTGCCAAGTTCAAGGAGCTTATTTTCCA...AGAAAACATGTTGTGAGGCTTTGCTTCCGCATCCTTCCTGTCTCTCCTTGTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000082070.13 |
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| 3UTR TCA 72 bp | TTCAGGGTCATTGTGAGCCCAAGAAGTGAAAGAGACTaGCTGCTGAAAGATACCCTTGTCCCTCAGTTCTAC | + |
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Preference number: 3 (lower is better) Translates to: FRVIVSPRSERD*LLKDTLVPQFY Trigger: GTAGAACTGAGGGACAAGGGTATCTTTCAGCAGTCAGTCTCTTTCACTTCTTGGGCTCACAATGACCCTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082070.13 |
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| 3UTR GCA 72 bp | CTGGTTGATAAAACCCACAAGGAGAGACAGGAAGGATaGGGAAGCAAAGCCTCACAACATGTTTTCTCTCTT | + |
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Preference number: 3 (lower is better) Translates to: LVDKTHKERQEG*GSKASQHVFSL Trigger: AAGAGAGAAAACATGTTGTGAGGCTTTGCTTCCGCATCCTTCCTGTCTCTCCTTGTGGGTTTTATCAACCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000082070.13 |
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| 3UTR TCA 72 bp | TATTTACCAATCGCTAAAGAATCTACAACAGTGGGATaGGTCTCAGGAAAAAGGCCCTGCCCTAAATCCTCT | + |
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Preference number: 3 (lower is better) Translates to: YLPIAKESTTVG*VSGKRPCPKSS Trigger: AGAGGATTTAGGGCAGGGCCTTTTTCCTGAGACTCATCCCACTGTTGTAGATTCTTTAGCGATTGGTAAATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| 3UTR GCA 72 bp | ATTTCCTTTCCACCAAGGACAGCATGGATTCCTTCCTaGGAATTTCTCTCACTAAGCCTTGAAAAGCATCAT | + |
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Preference number: 3 (lower is better) Translates to: ISFPPRTAWIPS*EFLSLSLEKHH Trigger: ATGATGCTTTTCAAGGCTTAGTGAGAGAAATTCGCAGGAAGGAATCCATGCTGTCCTTGGTGGAAAGGAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082070.13 |
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| 3UTR-3UTR CAA 90 bp | GACTCAAGAAGAAATACCAAGACTCTTCCACTTAAGAGAAGACAAGGACATTTTATAAGCTCCTTGAACTaGGCAGCCTCCTGGAATGAC | + |
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Preference number: 3 (lower is better) Translates to: DSRRNTKTLPLKRRQGHFISSLN*AASWND Trigger: GTCATTCCAGGAGGCTGCCAAGTTCAAGGAGCTTAT...AAAATGTCCTTGTCTTCTCTTAAGTGGAAGAGTCTTGGTATTTCTTCTTGAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082070.13 |
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| 3UTR TCA 72 bp | GAGATGGAGAGAGAAAGAGAGAGTGAGATGGAGATATaGACAATTGTCTGGTTGATAAAACCCACAAGGAGA | + |
|
Preference number: 3 (lower is better) Translates to: EMERERESEMEI*TIVWLIKPTRR Trigger: TCTCCTTGTGGGTTTTATCAACCAGACAATTGTTCATATCTCCATCTCACTCTCTCTTTCTCTCTCCATCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000082070.13 ENSMUST00000153060.8 |
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| 3UTR-3UTR CAA 90 bp | AGATGTACATGGTCGTTATCCACATCTTCTTCAGTTAACAGTGTAGCTGATTTTTGTCGGGGGCATGTTTaGAAATTGCCTTCTCTTGTT | + |
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Preference number: 3 (lower is better) Translates to: RCTWSLSTSSSVNSVADFCRGHV*KLPSLV Trigger: AACAAGAGAAGGCAATTTCAAAACATGCCCCCGACA...AAAATCAGCTACACTGTTAACTGAAGAAGATGTGGATAACGACCATGTACATCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| 3UTR CCA 72 bp | ATCACATTAAGGAAGCATACTGCTCACAGATGTACATaGTCGTTATCCACATCTTCTTCAGTTAACAGTGTA | + |
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Preference number: 3 (lower is better) Translates to: ITLRKHTAHRCT*SLSTSSSVNSV Trigger: TACACTGTTAACTGAAGAAGATGTGGATAACGACCATGTACATCTGTGAGCAGTATGCTTCCTTAATGTGAT 39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| CDS-3UTR TCA 90 bp | AGAGAACACTTAGTATGTAGAGGCCATATCGCTGCAGACAGATGGCTACTATGCGCTCCCGCATGGCCGTaGACTCTGCCGATTGTGGGG | + |
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Preference number: 4 (lower is better) Translates to: REHLVCRGHIAADRWLLCAPAWP*TLPIVG Trigger: CCCCACAATCGGCAGAGTTCACGGCCATGCGGGAGC...GCATAGTAGCCATCTGTCTGCAGCGATATGGCCTCTACATACTAAGTGTTCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082070.13 |
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| CDS-3UTR GCA 90 bp | TGCAGATGTCTCAAAGAAGGCACAGTTGTAGTCTCGAGCAAGATTCATGCCTTCCCCCCACGCATGTACTaGTCCCGCATGGCCGTGAAC | + |
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Preference number: 4 (lower is better) Translates to: CRCLKEGTVVVSSKIHAFPPRMY*SRMAVN Trigger: GTTCACGGCCATGCGGGAGCAGTACATGCGTGGGGG...GAAGGCATGAATCTTGCTCGAGACTACAACTGTGCCTTCTTTGAGACATCTGCA 53% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000082070.13 |
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| CDS-3UTR CCA 90 bp | CCCACAAGGAGAGACAGGAAGGATGCGGAAGCAAAGCCTCACAACATGTTTTCTCTGCCAGGGCAGCAGTaGGCTTCGTTTTCTACTTCC | + |
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Preference number: 4 (lower is better) Translates to: PTRRDRKDAEAKPHNMFSLPGQQ*ASFSTS Trigger: GGAAGTAGAAAACGAAGCCCACTGCTGCCCTGGCAG...AGAAAACATGTTGTGAGGCTTTGCTTCCGCATCCTTCCTGTCTCTCCTTGTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000082070.13 |
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| CDS-3UTR GCA 90 bp | TACAGATTTGTGAAATGCAAACAACCAGGGTTATCAGGCAAAAGCAGATCCCCTCCCCCACGCATGTACTaGTCCCGCATGGCCGTGAAC | + |
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Preference number: 4 (lower is better) Translates to: YRFVKCKQPGLSGKSRSPPPRMY*SRMAVN Trigger: GTTCACGGCCATGCGGGAGCAGTACATGCGTGGGGG...AGGGGATCTGCTTTTGCCTGATAACCCTGGTTGTTTGCATTTCACAAATCTGTA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000082070.13 ENSMUST00000153060.8 |
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| CDS-3UTR CCA 90 bp | AGAGAACACTTAGTATGTAGAGGCCATATCGCTGCAGACAGATGGCTACTATGCCCACCTTGTACTCTCTaGACCCGCCTGATGAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: REHLVCRGHIAADRWLLCPPCTL*TRLMSC Trigger: GCAGCTCATCAGGCGGGTCCAGAGAGTACAAGGTGG...GCATAGTAGCCATCTGTCTGCAGCGATATGGCCTCTACATACTAAGTGTTCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000082070.13 ENSMUST00000153060.8 |
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| CDS-3UTR GCA 90 bp | TGCAGATGTCTCAAAGAAGGCACAGTTGTAGTCTCGAGCAAGATTCATGCCTTCTTTACCAACGCCCCCTaGGCCCAGCATTACCACCTT | + |
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Preference number: 4 (lower is better) Translates to: CRCLKEGTVVVSSKIHAFFTNAP*AQHYHL Trigger: AAGGTGGTAATGCTGGGCGCAGGGGGCGTTGGTAAA...GAAGGCATGAATCTTGCTCGAGACTACAACTGTGCCTTCTTTGAGACATCTGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082070.13 |
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| CDS-3UTR GCA 90 bp | AAGAATCTACAACAGTGGGATGAGTCTCAGGAAAAAGGCCCTGCCCTAAATCCTGAGGCCTCCTCAGATTaGAGAGCTGACCAGCAGTGT | + |
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Preference number: 4 (lower is better) Translates to: KNLQQWDESQEKGPALNPEASSD*RADQQC Trigger: ACACTGCTGGTCAGCTCTGCAATCTGAGGAGGCCTC...AGGATTTAGGGCAGGGCCTTTTTCCTGAGACTCATCCCACTGTTGTAGATTCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| CDS-3UTR TCA 90 bp | AAGAATCTACAACAGTGGGATGAGTCTCAGGAAAAAGGCCCTGCCCTAAATCCTCTCAGATTGCAGAGCTaGCCAGCAGTGTCCAAGATG | + |
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Preference number: 4 (lower is better) Translates to: KNLQQWDESQEKGPALNPLRLQS*PAVSKM Trigger: CATCTTGGACACTGCTGGTCAGCTCTGCAATCTGAG...AGGATTTAGGGCAGGGCCTTTTTCCTGAGACTCATCCCACTGTTGTAGATTCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| CDS-3UTR TCA 90 bp | TATTTACAGATTTGTGAAATGCAAACAACCAGGGTTATCAGGCAAAAGCAGATCGCTCCCGCATGGCCGTaGACTCTGCCTGACCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: YLQICEMQTTRVIRQKQIAPAWP*TLPDQQ Trigger: CTGCTGGTCAGGCAGAGTTCACGGCCATGCGGGAGC...GATCTGCTTTTGCCTGATAACCCTGGTTGTTTGCATTTCACAAATCTGTAAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153060.8 |
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| CDS-3UTR CCA 90 bp | GCTCACAGATGTACATGGTCGTTATCCACATCTTCTTCAGTTAACAGTGTAGCTCCACCTTGTACTCTCTaGACCCGCCTGATGAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: AHRCTWSLSTSSSVNSVAPPCTL*TRLMSC Trigger: GCAGCTCATCAGGCGGGTCCAGAGAGTACAAGGTGG...AGCTACACTGTTAACTGAAGAAGATGTGGATAACGACCATGTACATCTGTGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| CDS-3UTR CCA 90 bp | GCTCACAGATGTACATGGTCGTTATCCACATCTTCTTCAGTTAACAGTGTAGCTCTGCCAGGGCAGCAGTaGGCTTCGTTTTCTACTTCC | + |
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Preference number: 4 (lower is better) Translates to: AHRCTWSLSTSSSVNSVALPGQQ*ASFSTS Trigger: GGAAGTAGAAAACGAAGCCCACTGCTGCCCTGGCAG...AGCTACACTGTTAACTGAAGAAGATGTGGATAACGACCATGTACATCTGTGAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| CDS-3UTR TCA 90 bp | TATTTACAGATTTGTGAAATGCAAACAACCAGGGTTATCAGGCAAAAGCAGATCGCCGTGAACTCTGCCTaGCCAGCAGTGTCCAAGATG | + |
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Preference number: 4 (lower is better) Translates to: YLQICEMQTTRVIRQKQIAVNSA*PAVSKM Trigger: CATCTTGGACACTGCTGGTCAGGCAGAGTTCACGGC...GATCTGCTTTTGCCTGATAACCCTGGTTGTTTGCATTTCACAAATCTGTAAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153060.8 |
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| CDS-3UTR GCA 90 bp | GTAAAAGGCAGTTATCAAAGTAACCAGCATATCACAGTTAGCTCTAACAGCATCTTTACCAACGCCCCCTaGGCCCAGCATTACCACCTT | + |
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Preference number: 4 (lower is better) Translates to: VKGSYQSNQHITVSSNSIFTNAP*AQHYHL Trigger: AAGGTGGTAATGCTGGGCGCAGGGGGCGTTGGTAAA...GATGCTGTTAGAGCTAACTGTGATATGCTGGTTACTTTGATAACTGCCTTTTAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| CDS-3UTR GCA 90 bp | TCCTTTCTTGGGCACATGTATCATCTAGTTCATAGTATTGCTGTCTTCCTACAATTTACCAACGCCCCCTaGGCCCAGCATTACCACCTT | + |
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Preference number: 4 (lower is better) Translates to: SFLGHMYHLVHSIAVFLQFTNAP*AQHYHL Trigger: AAGGTGGTAATGCTGGGCGCAGGGGGCGTTGGTAAA...TTGTAGGAAGACAGCAATACTATGAACTAGATGATACATGTGCCCAAGAAAGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000082070.13 ENSMUST00000153060.8 |
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| CDS-3UTR CCA 90 bp | TCCTTTCTTGGGCACATGTATCATCTAGTTCATAGTATTGCTGTCTTCCTACAACTGCCAGGGCAGCAGTaGGCTTCGTTTTCTACTTCC | + |
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Preference number: 4 (lower is better) Translates to: SFLGHMYHLVHSIAVFLQLPGQQ*ASFSTS Trigger: GGAAGTAGAAAACGAAGCCCACTGCTGCCCTGGCAG...TTGTAGGAAGACAGCAATACTATGAACTAGATGATACATGTGCCCAAGAAAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000082070.13 ENSMUST00000153060.8 |
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| CDS-3UTR CCA 90 bp | AGGACTCAAGAAGAAATACCAAGACTCTTCCACTTAAGAGAAGACAAGGACATTAACTTGGCAGCCTCCTaGAATGACTGGCGGTCAGTG | + |
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Preference number: 4 (lower is better) Translates to: RTQEEIPRLFHLREDKDINLAAS*NDWRSV Trigger: CACTGACCGCCAGTCATTCCAGGAGGCTGCCAAGTT...AATGTCCTTGTCTTCTCTTAAGTGGAAGAGTCTTGGTATTTCTTCTTGAGTCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153060.8 |
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| CDS-3UTR GCA 90 bp | TATTTACAGATTTGTGAAATGCAAACAACCAGGGTTATCAGGCAAAAGCAGATCCATGGCCGTGAACTCTaGCTGACCAGCAGTGTCCAA | + |
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Preference number: 4 (lower is better) Translates to: YLQICEMQTTRVIRQKQIHGREL*LTSSVQ Trigger: TTGGACACTGCTGGTCAGGCAGAGTTCACGGCCATG...GATCTGCTTTTGCCTGATAACCCTGGTTGTTTGCATTTCACAAATCTGTAAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153060.8 |
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| CDS-3UTR GCA 90 bp | AAGAATCTACAACAGTGGGATGAGTCTCAGGAAAAAGGCCCTGCCCTAAATCCTTGGTGGCTTATAAACTaGATTGTGACTGCGCTTTTA | + |
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Preference number: 4 (lower is better) Translates to: KNLQQWDESQEKGPALNPWWLIN*IVTALL Trigger: TAAAAGCGCAGTCACAATGCAGTTTATAAGCCACCA...AGGATTTAGGGCAGGGCCTTTTTCCTGAGACTCATCCCACTGTTGTAGATTCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| CDS-3UTR TCA 90 bp | TATTTACAGATTTGTGAAATGCAAACAACCAGGGTTATCAGGCAAAAGCAGATCTCTCTCACTAAGCCTTaGAAAGCATCATCGATACCG | + |
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Preference number: 4 (lower is better) Translates to: YLQICEMQTTRVIRQKQISLTKP*KASSIP Trigger: CGGTATCGATGATGCTTTTCAAGGCTTAGTGAGAGA...GATCTGCTTTTGCCTGATAACCCTGGTTGTTTGCATTTCACAAATCTGTAAATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153060.8 |
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| CDS-3UTR GCA 90 bp | TATTTACAGATTTGTGAAATGCAAACAACCAGGGTTATCAGGCAAAAGCAGATCTGGTGGCTTATAAACTaGATTGTGACTGCGCTTTTA | + |
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Preference number: 4 (lower is better) Translates to: YLQICEMQTTRVIRQKQIWWLIN*IVTALL Trigger: TAAAAGCGCAGTCACAATGCAGTTTATAAGCCACCA...GATCTGCTTTTGCCTGATAACCCTGGTTGTTTGCATTTCACAAATCTGTAAATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000082070.13 ENSMUST00000153060.8 |
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| CDS TCA 90 bp | ACGGACCTGGAAAATAAGCTCCTTGAACTTGGCAGCCTCCTGGAATaGCTGGCGGTCAGTGACAGAATAGCAGATGATGAAGCCCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: TDLENKLLELGSLLE*LAVSDRIADDEALS Trigger: GGAGAGGGCTTCATCATCTGCTATTCTGTCACTGACCGCCAGTCATTCCAGGAGGCTGCCAAGTTCAAGGAGCTTATTTTCCAGGTCCGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153060.8 |
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| CDS-3UTR CAA 90 bp | TGCAGATGTCTCAAAGAAGGCACAGTTGTAGTCTCGAGCAAGATTCATGCCTTCCCCAGCATTACCACCTaGTACTCTCTGGACCCGCCT | + |
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Preference number: 5 (lower is better) Translates to: CRCLKEGTVVVSSKIHAFPSITT*YSLDPP Trigger: AGGCGGGTCCAGAGAGTACAAGGTGGTAATGCTGGG...GAAGGCATGAATCTTGCTCGAGACTACAACTGTGCCTTCTTTGAGACATCTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082070.13 |
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| CDS GCA 90 bp | CAGAGGAGTAAATTAGGTTCACATTGGCTGGAGGCCTCCTCAGATTaGAGAGCTGACCAGCAGTGTCCAAGATGTCTAAGTAAGCAGGCT | + |
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Preference number: 5 (lower is better) Translates to: QRSKLGSHWLEASSD*RADQQCPRCLSKQA Trigger: AGCCTGCTTACTTAGACATCTTGGACACTGCTGGTCAGCTCTGCAATCTGAGGAGGCCTCCAGCCAATGTGAACCTAATTTACTCCTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| CDS-3UTR CAA 90 bp | AAGGAAGCATACTGCTCACAGATGTACATGGTCGTTATCCACATCTTCTTCAGTCCCAGCATTACCACCTaGTACTCTCTGGACCCGCCT | + |
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Preference number: 5 (lower is better) Translates to: KEAYCSQMYMVVIHIFFSPSITT*YSLDPP Trigger: AGGCGGGTCCAGAGAGTACAAGGTGGTAATGCTGGG...ACTGAAGAAGATGTGGATAACGACCATGTACATCTGTGAGCAGTATGCTTCCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139924.2 |
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| CDS-3UTR CAA 90 bp | TATTTACAGATTTGTGAAATGCAAACAACCAGGGTTATCAGGCAAAAGCAGATCCCCAGCATTACCACCTaGTACTCTCTGGACCCGCCT | + |
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Preference number: 5 (lower is better) Translates to: YLQICEMQTTRVIRQKQIPSITT*YSLDPP Trigger: AGGCGGGTCCAGAGAGTACAAGGTGGTAATGCTGGG...GATCTGCTTTTGCCTGATAACCCTGGTTGTTTGCATTTCACAAATCTGTAAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000082070.13 ENSMUST00000153060.8 |
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| CDS-3UTR CAA 90 bp | GACTCAAGAAGAAATACCAAGACTCTTCCACTTAAGAGAAGACAAGGACATTTTTGGAAAATAAGCTCCTaGAACTTGGCAGCCTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: DSRRNTKTLPLKRRQGHFWKISS*NLAASW Trigger: CCAGGAGGCTGCCAAGTTCAAGGAGCTTATTTTCCA...AAAATGTCCTTGTCTTCTCTTAAGTGGAAGAGTCTTGGTATTTCTTCTTGAGTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000153060.8 |
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| CDS CAA 90 bp | GTGACTGCGCTTTTACCAACGCCCCCTGCGCCCAGCATTACCACCTaGTACTCTCTGGACCCGCCTGATGAGCTGCCAGGGCAGCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: VTALLPTPPAPSITT*YSLDPPDELPGQQW Trigger: CCACTGCTGCCCTGGCAGCTCATCAGGCGGGTCCAGAGAGTACAAGGTGGTAATGCTGGGCGCAGGGGGCGTTGGTAAAAGCGCAGTCAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000082070.13 ENSMUST00000139924.2 ENSMUST00000153060.8 |
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| CDS CAA 72 bp | CTTTTACCAACGCCCCCTGCGCCCAGCATTACCACCTaGTACTCTCTGGACCCGCCTGATGAGCTGCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: LLPTPPAPSITT*YSLDPPDELPG Trigger: CCCTGGCAGCTCATCAGGCGGGTCCAGAGAGTACAAGGTGGTAATGCTGGGCGCAGGGGGCGTTGGTAAAAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000082070.13 ENSMUST00000139924.2 ENSMUST00000153060.8 |
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| CDS CAA 72 bp | TATCAATCCTCACCTGGGTTTTATAAGCATCTTCGATaGTGGGGTCGTGATAGTCCGGGAACTGGTGGCTTA | + |
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Preference number: 6 (lower is better) Translates to: YQSSPGFYKHLR*WGRDSPGTGGL Trigger: TAAGCCACCAGTTCCCGGACTATCACGACCCCACAATCGAAGATGCTTATAAAACCCAGGTGAGGATTGATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000139924.2 ENSMUST00000153060.8 |
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