Pregenerated sensors for RIPPLY2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047897

Ensembl transcript IDs: ENSMUST00000058846.11

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CCAGGAGTTCGAACCCACGGTCTCCAGAAGCCCTCGGACCCGGGCTaGGCGGACGGCGGGCAGCGGCTGCGCGAGGGCGGACGTGCTGGG	+
Preference number: 5 (lower is better) Translates to: PGVRTHGLQKPSDPG*ADGGQRLREGGRAG Trigger: CCCAGCACGTCCGCCCTCGCGCAGCCGCTGCCCGCCGTCCGCGCAGCCCGGGTCCGAGGGCTTCTGGAGACCGTGGGTTCGAACTCCTGG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058846.11
CDS TCA 90 bp	CTTGATATAAGTAGTCGTAACACTTGGACTTGGGCCAGAATAGCCTaGCAGGGTGTTGGTATTGCAAAAGCTTCCCGGAAGCTTCTGCCA	+
Preference number: 5 (lower is better) Translates to: LDISSRNTWTWARIA*QGVGIAKASRKLLP Trigger: TGGCAGAAGCTTCCGGGAAGCTTTTGCAATACCAACACCCTGTCAGGCTATTCTGGCCCAAGTCCAAGTGTTACGACTACTTATATCAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058846.11
CDS GCA 72 bp	CGCGGACGGCGGGCAGCGGCTGCGCGAGGGCGGACGTaGTGGGTTGTGCGCGCTCTCGGCGCTCTCGGTGGT	+
Preference number: 6 (lower is better) Translates to: RGRRAAAARGRT*WVVRALGALGG Trigger: ACCACCGAGAGCGCCGAGAGCGCGCACAACCCAGCACGTCCGCCCTCGCGCAGCCGCTGCCCGCCGTCCGCG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058846.11
CDS GCA 72 bp	CGAACCCACGGTCTCCAGAAGCCCTCGGACCCGGGCTaGGCGGACGGCGGGCAGCGGCTGCGCGAGGGCGGA	+
Preference number: 6 (lower is better) Translates to: RTHGLQKPSDPG*ADGGQRLREGG Trigger: TCCGCCCTCGCGCAGCCGCTGCCCGCCGTCCGCGCAGCCCGGGTCCGAGGGCTTCTGGAGACCGTGGGTTCG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058846.11
CDS CCA 72 bp	GGACGGCGGGCAGCGGCTGCGCGAGGGCGGACGTGCTaGGTTGTGCGCGCTCTCGGCGCTCTCGGTGGTATC	+
Preference number: 6 (lower is better) Translates to: GRRAAAARGRTC*VVRALGALGGI Trigger: GATACCACCGAGAGCGCCGAGAGCGCGCACAACCCAGCACGTCCGCCCTCGCGCAGCCGCTGCCCGCCGTCC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058846.11
CDS CCA 72 bp	AAAGCTTCCCGGAAGCTTCTGCCATTCCTGGGCCACTaGGCAACGCCTCTGCAGCACGGGGCCCCGTCCGCT	+
Preference number: 6 (lower is better) Translates to: KASRKLLPFLGH*ATPLQHGAPSA Trigger: AGCGGACGGGGCCCCGTGCTGCAGAGGCGTTGCCCAGTGGCCCAGGAATGGCAGAAGCTTCCGGGAAGCTTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058846.11
CDS GCA 72 bp	AGCTTCTGCCATTCCTGGGCCACTGGGCAACGCCTCTaGAGCACGGGGCCCCGTCCGCTTCTCTTTCTCTCC	+
Preference number: 6 (lower is better) Translates to: SFCHSWATGQRL*STGPRPLLFLS Trigger: GGAGAGAAAGAGAAGCGGACGGGGCCCCGTGCTGCAGAGGCGTTGCCCAGTGGCCCAGGAATGGCAGAAGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058846.11
CDS CCA 72 bp	GTATTGCAAAAGCTTCCCGGAAGCTTCTGCCATTCCTaGGCCACTGGGCAACGCCTCTGCAGCACGGGGCCC	+
Preference number: 6 (lower is better) Translates to: VLQKLPGSFCHS*ATGQRLCSTGP Trigger: GGGCCCCGTGCTGCAGAGGCGTTGCCCAGTGGCCCAGGAATGGCAGAAGCTTCCGGGAAGCTTTTGCAATAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058846.11

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