Pregenerated sensors for RIPPLY1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000072945Ensembl transcript IDs: ENSMUST00000101217.4
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
---|---|---|
CDS-3UTR TCA 90 bp | AGACGAGAGCATGCCAGAGGCCTAGACTTGCAGGCCAATCAGGAAAGCCAGGGGTGTGGGTCAGGGGAATaGGCTGTGGCCTTATGTGTT | + |
Preference number: 4 (lower is better) Translates to: RREHARGLDLQANQESQGCGSGE*AVALCV Trigger: AACACATAAGGCCACAGCTCATTCCCCTGACCCACA...CCCCTGGCTTTCCTGATTGGCCTGCAAGTCTAGGCCTCTGGCATGCTCTCGTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS-3UTR CCA 90 bp | AGACTCTTTGCGAATCGATGCCCTTGGAAACGTGCCAAGTATATCTGGGATTGCGCTTGGGCCAAGGCCTaGCCAGGGAGGGCAGCAGCA | + |
Preference number: 4 (lower is better) Translates to: RLFANRCPWKRAKYIWDCAWAKA*PGRAAA Trigger: TGCTGCTGCCCTCCCTGGCCAGGCCTTGGCCCAAGC...GCAATCCCAGATATACTTGGCACGTTTCCAAGGGCATCGATTCGCAAAGAGTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS-3UTR GCA 90 bp | GGAGCTAGACAGCCTGAGGACACTGGTTTCAATCCAGAAAAGCTGTGTCTGGAGACCAGACTCCTCGCCTaGCTTGGCTGGTCGTTTATA | + |
Preference number: 4 (lower is better) Translates to: GARQPEDTGFNPEKLCLETRLLA*LGWSFI Trigger: TATAAACGACCAGCCAAGGCAGGCGAGGAGTCTGGT...CTCCAGACACAGCTTTTCTGGATTGAAACCAGTGTCCTCAGGCTGTCTAGCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS-3UTR TCA 90 bp | GAGCTAGACAGCCTGAGGACACTGGTTTCAATCCAGAAAAGCTGTGTCTGGAGAATGTGTTGTGGCCTCTaGTACCCCCATACACACTTC | + |
Preference number: 4 (lower is better) Translates to: ELDSLRTLVSIQKSCVWRMCCGL*YPHTHF Trigger: GAAGTGTGTATGGGGGTATCAGAGGCCACAACACAT...TCTCCAGACACAGCTTTTCTGGATTGAAACCAGTGTCCTCAGGCTGTCTAGCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS-3UTR GCA 90 bp | GCTAGACAGCCTGAGGACACTGGTTTCAATCCAGAAAAGCTGTGTCTGGAGACTGTCTTCCTCATTGTCTaGACTGTCAGAATCCTCATA | + |
Preference number: 4 (lower is better) Translates to: ARQPEDTGFNPEKLCLETVFLIV*TVRILI Trigger: TATGAGGATTCTGACAGTGCAGACAATGAGGAAGAC...AGTCTCCAGACACAGCTTTTCTGGATTGAAACCAGTGTCCTCAGGCTGTCTAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS-3UTR CCA 90 bp | TGGAGACTCTTTGCGAATCGATGCCCTTGGAAACGTGCCAAGTATATCTGGGATCCCCATACACACTTCTaGTTCATTCTCATTGACATC | + |
Preference number: 4 (lower is better) Translates to: WRLFANRCPWKRAKYIWDPHTHF*FILIDI Trigger: GATGTCAATGAGAATGAACCAGAAGTGTGTATGGGG...ATCCCAGATATACTTGGCACGTTTCCAAGGGCATCGATTCGCAAAGAGTCTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS-3UTR TCA 90 bp | AGACTCTTTGCGAATCGATGCCCTTGGAAACGTGCCAAGTATATCTGGGATTGCCTGGTTCATTCTCATTaGCATCTTTGTCTTCATCTT | + |
Preference number: 4 (lower is better) Translates to: RLFANRCPWKRAKYIWDCLVHSH*HLCLHL Trigger: AAGATGAAGACAAAGATGTCAATGAGAATGAACCAG...GCAATCCCAGATATACTTGGCACGTTTCCAAGGGCATCGATTCGCAAAGAGTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS GCA 90 bp | GCCGCTGTCGCCCTATTATCAGCCCAGTCCACCAGACTCCTCGCCTaGCTTGGCTGGTCGTTTATAGAGGACAGCCAGGGTCTCCAAAGA | + |
Preference number: 5 (lower is better) Translates to: AAVALLSAQSTRLLA*LGWSFIEDSQGLQR Trigger: TCTTTGGAGACCCTGGCTGTCCTCTATAAACGACCAGCCAAGGCAGGCGAGGAGTCTGGTGGACTGGGCTGATAATAGGGCGACAGCGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS CCA 90 bp | TGTCGCCCTATTATCAGCCCAGTCCACCAGACTCCTCGCCTGCCTTaGCTGGTCGTTTATAGAGGACAGCCAGGGTCTCCAAAGATAAGC | + |
Preference number: 5 (lower is better) Translates to: CRPIISPVHQTPRLP*LVVYRGQPGSPKIS Trigger: GCTTATCTTTGGAGACCCTGGCTGTCCTCTATAAACGACCAGCCAAGGCAGGCGAGGAGTCTGGTGGACTGGGCTGATAATAGGGCGACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS-3UTR CAA 90 bp | GGAGCTAGACAGCCTGAGGACACTGGTTTCAATCCAGAAAAGCTGTGTCTGGAGGCACCTTCTTGTCCATaGATTTGTGCTAGGGCAGGG | + |
Preference number: 5 (lower is better) Translates to: GARQPEDTGFNPEKLCLEAPSCP*ICARAG Trigger: CCCTGCCCTAGCACAAATCAATGGACAAGAAGGTGC...CTCCAGACACAGCTTTTCTGGATTGAAACCAGTGTCCTCAGGCTGTCTAGCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS-3UTR CAA 90 bp | GGAGACTCTTTGCGAATCGATGCCCTTGGAAACGTGCCAAGTATATCTGGGATTAAGTCAGAGTCAGTCTaGGCAGCCTCAGCCGCTGTC | + |
Preference number: 5 (lower is better) Translates to: GDSLRIDALGNVPSISGIKSESV*AASAAV Trigger: GACAGCGGCTGAGGCTGCCAAGACTGACTCTGACTT...AATCCCAGATATACTTGGCACGTTTCCAAGGGCATCGATTCGCAAAGAGTCTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS-3UTR CAA 90 bp | GAGCTAGACAGCCTGAGGACACTGGTTTCAATCCAGAAAAGCTGTGTCTGGAGAGCCTGGACAGGGAAGTaGTTTAGTAATATCTCCCCA | + |
Preference number: 5 (lower is better) Translates to: ELDSLRTLVSIQKSCVWRAWTGK*FSNISP Trigger: TGGGGAGATATTACTAAACAACTTCCCTGTCCAGGC...TCTCCAGACACAGCTTTTCTGGATTGAAACCAGTGTCCTCAGGCTGTCTAGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS-3UTR CAA 90 bp | GCTAGACAGCCTGAGGACACTGGTTTCAATCCAGAAAAGCTGTGTCTGGAGACTTCCTTGTCTTCCTCATaGTCTGCACTGTCAGAATCC | + |
Preference number: 5 (lower is better) Translates to: ARQPEDTGFNPEKLCLETSLSSS*SALSES Trigger: GGATTCTGACAGTGCAGACAATGAGGAAGACAAGGA...AGTCTCCAGACACAGCTTTTCTGGATTGAAACCAGTGTCCTCAGGCTGTCTAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS-3UTR CAA 90 bp | TGGAGACTCTTTGCGAATCGATGCCCTTGGAAACGTGCCAAGTATATCTGGGATGAATCCTCATATAAATaGATGGTGGCCTGGACAGGG | + |
Preference number: 5 (lower is better) Translates to: WRLFANRCPWKRAKYIWDESSYK*MVAWTG Trigger: CCCTGTCCAGGCCACCATCAATTTATATGAGGATTC...ATCCCAGATATACTTGGCACGTTTCCAAGGGCATCGATTCGCAAAGAGTCTCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS-3UTR CAA 90 bp | TGGAGACTCTTTGCGAATCGATGCCCTTGGAAACGTGCCAAGTATATCTGGGATTCTGGTTCATTCTCATaGACATCTTTGTCTTCATCT | + |
Preference number: 5 (lower is better) Translates to: WRLFANRCPWKRAKYIWDSGSFS*TSLSSS Trigger: AGATGAAGACAAAGATGTCAATGAGAATGAACCAGA...ATCCCAGATATACTTGGCACGTTTCCAAGGGCATCGATTCGCAAAGAGTCTCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS GCA 72 bp | GCCCTATTATCAGCCCAGTCCACCAGACTCCTCGCCTaGCTTGGCTGGTCGTTTATAGAGGACAGCCAGGGT | + |
Preference number: 6 (lower is better) Translates to: ALLSAQSTRLLA*LGWSFIEDSQG Trigger: ACCCTGGCTGTCCTCTATAAACGACCAGCCAAGGCAGGCGAGGAGTCTGGTGGACTGGGCTGATAATAGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS CCA 72 bp | TCAGCCCAGTCCACCAGACTCCTCGCCTGCCTTGGCTaGTCGTTTATAGAGGACAGCCAGGGTCTCCAAAGA | + |
Preference number: 6 (lower is better) Translates to: SAQSTRLLACLG*SFIEDSQGLQR Trigger: TCTTTGGAGACCCTGGCTGTCCTCTATAAACGACCAGCCAAGGCAGGCGAGGAGTCTGGTGGACTGGGCTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS TCA 72 bp | GGTAGTCAAAGGAGTGGGACTTGGGCCAGTAGAGCCTaGCCGGGTGATGGAAGTCAGAGTCAGTCTTGGCAG | + |
Preference number: 6 (lower is better) Translates to: GSQRSGTWASRA*PGDGSQSQSWQ Trigger: CTGCCAAGACTGACTCTGACTTCCATCACCCGGTCAGGCTCTACTGGCCCAAGTCCCACTCCTTTGACTACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS CCA 72 bp | ATTATCAGCCCAGTCCACCAGACTCCTCGCCTGCCTTaGCTGGTCGTTTATAGAGGACAGCCAGGGTCTCCA | + |
Preference number: 6 (lower is better) Translates to: IISPVHQTPRLP*LVVYRGQPGSP Trigger: TGGAGACCCTGGCTGTCCTCTATAAACGACCAGCCAAGGCAGGCGAGGAGTCTGGTGGACTGGGCTGATAAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS CAA 90 bp | GACAGGCCGAGTGTGGGTCAGGGGAATGAGCTGTGGCCTTATGTGTaGTGGCCTCTGATACCCCCATACACACTTCTGGTTCATTCTCAT | + |
Preference number: 6 (lower is better) Translates to: DRPSVGQGNELWPYV*WPLIPPYTLLVHSH Trigger: ATGAGAATGAACCAGAAGTGTGTATGGGGGTATCAGAGGCCACAACACATAAGGCCACAGCTCATTCCCCTGACCCACACTCGGCCTGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS CAA 72 bp | AGTGTGGGTCAGGGGAATGAGCTGTGGCCTTATGTGTaGTGGCCTCTGATACCCCCATACACACTTCTGGTT | + |
Preference number: 6 (lower is better) Translates to: SVGQGNELWPYV*WPLIPPYTLLV Trigger: AACCAGAAGTGTGTATGGGGGTATCAGAGGCCACAACACATAAGGCCACAGCTCATTCCCCTGACCCACACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS TCA 72 bp | AGGGGAATGAGCTGTGGCCTTATGTGTTGTGGCCTCTaGTACCCCCATACACACTTCTGGTTCATTCTCATT | + |
Preference number: 6 (lower is better) Translates to: RGMSCGLMCCGL*YPHTHFWFILI Trigger: AATGAGAATGAACCAGAAGTGTGTATGGGGGTATCAGAGGCCACAACACATAAGGCCACAGCTCATTCCCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS GCA 72 bp | GTTTATAGAGGACAGCCAGGGTCTCCAAAGATAAGCTaGCCGTTCATTCCTAGCACCTTCTTGTCCATTGAT | + |
Preference number: 6 (lower is better) Translates to: VYRGQPGSPKIS*PFIPSTFLSID Trigger: ATCAATGGACAAGAAGGTGCTAGGAATGAACGGGCAGCTTATCTTTGGAGACCCTGGCTGTCCTCTATAAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS CAA 90 bp | TCCTTGTCTTCCTCATTGTCTGCACTGTCAGAATCCTCATATAAATaGATGGTGGCCTGGACAGGGAAGTTGTTTAGTAATATCTCCCCA | + |
Preference number: 6 (lower is better) Translates to: SLSSSLSALSESSYK*MVAWTGKLFSNISP Trigger: TGGGGAGATATTACTAAACAACTTCCCTGTCCAGGCCACCATCAATTTATATGAGGATTCTGACAGTGCAGACAATGAGGAAGACAAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |
||
CDS CAA 72 bp | TCCTCATTGTCTGCACTGTCAGAATCCTCATATAAATaGATGGTGGCCTGGACAGGGAAGTTGTTTAGTAAT | + |
Preference number: 6 (lower is better) Translates to: SSLSALSESSYK*MVAWTGKLFSN Trigger: ATTACTAAACAACTTCCCTGTCCAGGCCACCATCAATTTATATGAGGATTCTGACAGTGCAGACAATGAGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101217.4 |