RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RIPPLY1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000072945

Ensembl transcript IDs: ENSMUST00000101217.4

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp AGACGAGAGCATGCCAGAGGCCTAGACTTGCAGGCCAATCAGGAAAGCCAGGGGTGTGGGTCAGGGGAATaGGCTGTGGCCTTATGTGTT +
Preference number: 4 (lower is better)
Translates to: RREHARGLDLQANQESQGCGSGE*AVALCV
Trigger: AACACATAAGGCCACAGCTCATTCCCCTGACCCACA...CCCCTGGCTTTCCTGATTGGCCTGCAAGTCTAGGCCTCTGGCATGCTCTCGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS-3UTR CCA 90 bp AGACTCTTTGCGAATCGATGCCCTTGGAAACGTGCCAAGTATATCTGGGATTGCGCTTGGGCCAAGGCCTaGCCAGGGAGGGCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: RLFANRCPWKRAKYIWDCAWAKA*PGRAAA
Trigger: TGCTGCTGCCCTCCCTGGCCAGGCCTTGGCCCAAGC...GCAATCCCAGATATACTTGGCACGTTTCCAAGGGCATCGATTCGCAAAGAGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS-3UTR GCA 90 bp GGAGCTAGACAGCCTGAGGACACTGGTTTCAATCCAGAAAAGCTGTGTCTGGAGACCAGACTCCTCGCCTaGCTTGGCTGGTCGTTTATA +
Preference number: 4 (lower is better)
Translates to: GARQPEDTGFNPEKLCLETRLLA*LGWSFI
Trigger: TATAAACGACCAGCCAAGGCAGGCGAGGAGTCTGGT...CTCCAGACACAGCTTTTCTGGATTGAAACCAGTGTCCTCAGGCTGTCTAGCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS-3UTR TCA 90 bp GAGCTAGACAGCCTGAGGACACTGGTTTCAATCCAGAAAAGCTGTGTCTGGAGAATGTGTTGTGGCCTCTaGTACCCCCATACACACTTC +
Preference number: 4 (lower is better)
Translates to: ELDSLRTLVSIQKSCVWRMCCGL*YPHTHF
Trigger: GAAGTGTGTATGGGGGTATCAGAGGCCACAACACAT...TCTCCAGACACAGCTTTTCTGGATTGAAACCAGTGTCCTCAGGCTGTCTAGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS-3UTR GCA 90 bp GCTAGACAGCCTGAGGACACTGGTTTCAATCCAGAAAAGCTGTGTCTGGAGACTGTCTTCCTCATTGTCTaGACTGTCAGAATCCTCATA +
Preference number: 4 (lower is better)
Translates to: ARQPEDTGFNPEKLCLETVFLIV*TVRILI
Trigger: TATGAGGATTCTGACAGTGCAGACAATGAGGAAGAC...AGTCTCCAGACACAGCTTTTCTGGATTGAAACCAGTGTCCTCAGGCTGTCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS-3UTR CCA 90 bp TGGAGACTCTTTGCGAATCGATGCCCTTGGAAACGTGCCAAGTATATCTGGGATCCCCATACACACTTCTaGTTCATTCTCATTGACATC +
Preference number: 4 (lower is better)
Translates to: WRLFANRCPWKRAKYIWDPHTHF*FILIDI
Trigger: GATGTCAATGAGAATGAACCAGAAGTGTGTATGGGG...ATCCCAGATATACTTGGCACGTTTCCAAGGGCATCGATTCGCAAAGAGTCTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS-3UTR TCA 90 bp AGACTCTTTGCGAATCGATGCCCTTGGAAACGTGCCAAGTATATCTGGGATTGCCTGGTTCATTCTCATTaGCATCTTTGTCTTCATCTT +
Preference number: 4 (lower is better)
Translates to: RLFANRCPWKRAKYIWDCLVHSH*HLCLHL
Trigger: AAGATGAAGACAAAGATGTCAATGAGAATGAACCAG...GCAATCCCAGATATACTTGGCACGTTTCCAAGGGCATCGATTCGCAAAGAGTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS GCA 90 bp GCCGCTGTCGCCCTATTATCAGCCCAGTCCACCAGACTCCTCGCCTaGCTTGGCTGGTCGTTTATAGAGGACAGCCAGGGTCTCCAAAGA +
Preference number: 5 (lower is better)
Translates to: AAVALLSAQSTRLLA*LGWSFIEDSQGLQR
Trigger: TCTTTGGAGACCCTGGCTGTCCTCTATAAACGACCAGCCAAGGCAGGCGAGGAGTCTGGTGGACTGGGCTGATAATAGGGCGACAGCGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS CCA 90 bp TGTCGCCCTATTATCAGCCCAGTCCACCAGACTCCTCGCCTGCCTTaGCTGGTCGTTTATAGAGGACAGCCAGGGTCTCCAAAGATAAGC +
Preference number: 5 (lower is better)
Translates to: CRPIISPVHQTPRLP*LVVYRGQPGSPKIS
Trigger: GCTTATCTTTGGAGACCCTGGCTGTCCTCTATAAACGACCAGCCAAGGCAGGCGAGGAGTCTGGTGGACTGGGCTGATAATAGGGCGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS-3UTR CAA 90 bp GGAGCTAGACAGCCTGAGGACACTGGTTTCAATCCAGAAAAGCTGTGTCTGGAGGCACCTTCTTGTCCATaGATTTGTGCTAGGGCAGGG +
Preference number: 5 (lower is better)
Translates to: GARQPEDTGFNPEKLCLEAPSCP*ICARAG
Trigger: CCCTGCCCTAGCACAAATCAATGGACAAGAAGGTGC...CTCCAGACACAGCTTTTCTGGATTGAAACCAGTGTCCTCAGGCTGTCTAGCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS-3UTR CAA 90 bp GGAGACTCTTTGCGAATCGATGCCCTTGGAAACGTGCCAAGTATATCTGGGATTAAGTCAGAGTCAGTCTaGGCAGCCTCAGCCGCTGTC +
Preference number: 5 (lower is better)
Translates to: GDSLRIDALGNVPSISGIKSESV*AASAAV
Trigger: GACAGCGGCTGAGGCTGCCAAGACTGACTCTGACTT...AATCCCAGATATACTTGGCACGTTTCCAAGGGCATCGATTCGCAAAGAGTCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS-3UTR CAA 90 bp GAGCTAGACAGCCTGAGGACACTGGTTTCAATCCAGAAAAGCTGTGTCTGGAGAGCCTGGACAGGGAAGTaGTTTAGTAATATCTCCCCA +
Preference number: 5 (lower is better)
Translates to: ELDSLRTLVSIQKSCVWRAWTGK*FSNISP
Trigger: TGGGGAGATATTACTAAACAACTTCCCTGTCCAGGC...TCTCCAGACACAGCTTTTCTGGATTGAAACCAGTGTCCTCAGGCTGTCTAGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS-3UTR CAA 90 bp GCTAGACAGCCTGAGGACACTGGTTTCAATCCAGAAAAGCTGTGTCTGGAGACTTCCTTGTCTTCCTCATaGTCTGCACTGTCAGAATCC +
Preference number: 5 (lower is better)
Translates to: ARQPEDTGFNPEKLCLETSLSSS*SALSES
Trigger: GGATTCTGACAGTGCAGACAATGAGGAAGACAAGGA...AGTCTCCAGACACAGCTTTTCTGGATTGAAACCAGTGTCCTCAGGCTGTCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS-3UTR CAA 90 bp TGGAGACTCTTTGCGAATCGATGCCCTTGGAAACGTGCCAAGTATATCTGGGATGAATCCTCATATAAATaGATGGTGGCCTGGACAGGG +
Preference number: 5 (lower is better)
Translates to: WRLFANRCPWKRAKYIWDESSYK*MVAWTG
Trigger: CCCTGTCCAGGCCACCATCAATTTATATGAGGATTC...ATCCCAGATATACTTGGCACGTTTCCAAGGGCATCGATTCGCAAAGAGTCTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS-3UTR CAA 90 bp TGGAGACTCTTTGCGAATCGATGCCCTTGGAAACGTGCCAAGTATATCTGGGATTCTGGTTCATTCTCATaGACATCTTTGTCTTCATCT +
Preference number: 5 (lower is better)
Translates to: WRLFANRCPWKRAKYIWDSGSFS*TSLSSS
Trigger: AGATGAAGACAAAGATGTCAATGAGAATGAACCAGA...ATCCCAGATATACTTGGCACGTTTCCAAGGGCATCGATTCGCAAAGAGTCTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS GCA 72 bp GCCCTATTATCAGCCCAGTCCACCAGACTCCTCGCCTaGCTTGGCTGGTCGTTTATAGAGGACAGCCAGGGT +
Preference number: 6 (lower is better)
Translates to: ALLSAQSTRLLA*LGWSFIEDSQG
Trigger: ACCCTGGCTGTCCTCTATAAACGACCAGCCAAGGCAGGCGAGGAGTCTGGTGGACTGGGCTGATAATAGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS CCA 72 bp TCAGCCCAGTCCACCAGACTCCTCGCCTGCCTTGGCTaGTCGTTTATAGAGGACAGCCAGGGTCTCCAAAGA +
Preference number: 6 (lower is better)
Translates to: SAQSTRLLACLG*SFIEDSQGLQR
Trigger: TCTTTGGAGACCCTGGCTGTCCTCTATAAACGACCAGCCAAGGCAGGCGAGGAGTCTGGTGGACTGGGCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS TCA 72 bp GGTAGTCAAAGGAGTGGGACTTGGGCCAGTAGAGCCTaGCCGGGTGATGGAAGTCAGAGTCAGTCTTGGCAG +
Preference number: 6 (lower is better)
Translates to: GSQRSGTWASRA*PGDGSQSQSWQ
Trigger: CTGCCAAGACTGACTCTGACTTCCATCACCCGGTCAGGCTCTACTGGCCCAAGTCCCACTCCTTTGACTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS CCA 72 bp ATTATCAGCCCAGTCCACCAGACTCCTCGCCTGCCTTaGCTGGTCGTTTATAGAGGACAGCCAGGGTCTCCA +
Preference number: 6 (lower is better)
Translates to: IISPVHQTPRLP*LVVYRGQPGSP
Trigger: TGGAGACCCTGGCTGTCCTCTATAAACGACCAGCCAAGGCAGGCGAGGAGTCTGGTGGACTGGGCTGATAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS CAA 90 bp GACAGGCCGAGTGTGGGTCAGGGGAATGAGCTGTGGCCTTATGTGTaGTGGCCTCTGATACCCCCATACACACTTCTGGTTCATTCTCAT +
Preference number: 6 (lower is better)
Translates to: DRPSVGQGNELWPYV*WPLIPPYTLLVHSH
Trigger: ATGAGAATGAACCAGAAGTGTGTATGGGGGTATCAGAGGCCACAACACATAAGGCCACAGCTCATTCCCCTGACCCACACTCGGCCTGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS CAA 72 bp AGTGTGGGTCAGGGGAATGAGCTGTGGCCTTATGTGTaGTGGCCTCTGATACCCCCATACACACTTCTGGTT +
Preference number: 6 (lower is better)
Translates to: SVGQGNELWPYV*WPLIPPYTLLV
Trigger: AACCAGAAGTGTGTATGGGGGTATCAGAGGCCACAACACATAAGGCCACAGCTCATTCCCCTGACCCACACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS TCA 72 bp AGGGGAATGAGCTGTGGCCTTATGTGTTGTGGCCTCTaGTACCCCCATACACACTTCTGGTTCATTCTCATT +
Preference number: 6 (lower is better)
Translates to: RGMSCGLMCCGL*YPHTHFWFILI
Trigger: AATGAGAATGAACCAGAAGTGTGTATGGGGGTATCAGAGGCCACAACACATAAGGCCACAGCTCATTCCCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS GCA 72 bp GTTTATAGAGGACAGCCAGGGTCTCCAAAGATAAGCTaGCCGTTCATTCCTAGCACCTTCTTGTCCATTGAT +
Preference number: 6 (lower is better)
Translates to: VYRGQPGSPKIS*PFIPSTFLSID
Trigger: ATCAATGGACAAGAAGGTGCTAGGAATGAACGGGCAGCTTATCTTTGGAGACCCTGGCTGTCCTCTATAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS CAA 90 bp TCCTTGTCTTCCTCATTGTCTGCACTGTCAGAATCCTCATATAAATaGATGGTGGCCTGGACAGGGAAGTTGTTTAGTAATATCTCCCCA +
Preference number: 6 (lower is better)
Translates to: SLSSSLSALSESSYK*MVAWTGKLFSNISP
Trigger: TGGGGAGATATTACTAAACAACTTCCCTGTCCAGGCCACCATCAATTTATATGAGGATTCTGACAGTGCAGACAATGAGGAAGACAAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4
CDS CAA 72 bp TCCTCATTGTCTGCACTGTCAGAATCCTCATATAAATaGATGGTGGCCTGGACAGGGAAGTTGTTTAGTAAT +
Preference number: 6 (lower is better)
Translates to: SSLSALSESSYK*MVAWTGKLFSN
Trigger: ATTACTAAACAACTTCCCTGTCCAGGCCACCATCAATTTATATGAGGATTCTGACAGTGCAGACAATGAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101217.4