RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RIPK4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000005251

Ensembl transcript IDs: ENSMUST00000019386.10

Found 201 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGCCACCAACAGGGTGAGCAGTGTCCCAGGACCATTCTGTCCCCATaGGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCCCTGGTTT +
Preference number: 1 (lower is better)
Translates to: GHQQGEQCPRTILSP*GNKDGPEAYTEPWF
Trigger: AAACCAGGGCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAATGGTCCTGGGACACTGCTCACCCTGTTGGTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR CCA 90 bp AACAATCTCCAATGGCCACCTCTGCCCACATTCATCTACTGTAACTaGAACATAGCAGAAGTTGCTAAAGGGCAAGTCAGCAAAGCCCTT +
Preference number: 1 (lower is better)
Translates to: NNLQWPPLPTFIYCN*NIAEVAKGQVSKAL
Trigger: AAGGGCTTTGCTGACTTGCCCTTTAGCAACTTCTGCTATGTTCCAGTTACAGTAGATGAATGTGGGCAGAGGTGGCCATTGGAGATTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR TCA 90 bp CACATACCATGCTATAGCATGTTTGCACACAGGTCATCTCTACAGTaGCAGTGTTCAGAACAGAAATGGGGAAGGTACAACAAAAGGCTA +
Preference number: 1 (lower is better)
Translates to: HIPCYSMFAHRSSLQ*QCSEQKWGRYNKRL
Trigger: TAGCCTTTTGTTGTACCTTCCCCATTTCTGTTCTGAACACTGTCACTGTAGAGATGACCTGTGTGCAAACATGCTATAGCATGGTATGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR CAA 90 bp CCAAGCAAGCAGAAATGGCTTGCTCTATGGACAGAGGAGACATTCTaGTATAGGCTTTGTCATAAAAGGCCTGCATCAGCAGCCAATCAA +
Preference number: 2 (lower is better)
Translates to: PSKQKWLALWTEETF*YRLCHKRPASAANQ
Trigger: TTGATTGGCTGCTGATGCAGGCCTTTTATGACAAAGCCTATACAAGAATGTCTCCTCTGTCCATAGAGCAAGCCATTTCTGCTTGCTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR-3UTR GCA 90 bp GGTCATCTCTACAGTGACAGTGTTCAGAACAGAAATGGGGAAGGTACAACAAAAACACTTTGGCTACTGTaGCCCAAGACAGCTACTCCT +
Preference number: 2 (lower is better)
Translates to: GHLYSDSVQNRNGEGTTKTLWLL*PKTATP
Trigger: AGGAGTAGCTGTCTTGGGGCACAGTAGCCAAAGTGT...TTTTGTTGTACCTTCCCCATTTCTGTTCTGAACACTGTCACTGTAGAGATGACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR-3UTR TCA 90 bp ACCAAAACCAAAATACCAAATGAAACAGCAGTTTCATGTTGGCAAGGCTGTCCAACCATTCTGTCCCCATaGGGAAACAAGGATGGTCCA +
Preference number: 2 (lower is better)
Translates to: TKTKIPNETAVSCWQGCPTILSP*GNKDGP
Trigger: TGGACCATCCTTGTTTCCTCATGGGGACAGAATGGT...TGGACAGCCTTGCCAACATGAAACTGCTGTTTCATTTGGTATTTTGGTTTTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR-3UTR TCA 90 bp ACCAAAACCAAAATACCAAATGAAACAGCAGTTTCATGTTGGCAAGGCTGTCCACTCTGCCCATCACAATaGGAAGACAAAGGACACTGC +
Preference number: 2 (lower is better)
Translates to: TKTKIPNETAVSCWQGCPLCPSQ*EDKGHC
Trigger: GCAGTGTCCTTTGTCTTCTCATTGTGATGGGCAGAG...TGGACAGCCTTGCCAACATGAAACTGCTGTTTCATTTGGTATTTTGGTTTTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR-3UTR CCA 90 bp GGTCATCTCTACAGTGACAGTGTTCAGAACAGAAATGGGGAAGGTACAACAAAATTAGGACCAACCCTGTaGCTTTATAATCACTCCCTT +
Preference number: 2 (lower is better)
Translates to: GHLYSDSVQNRNGEGTTKLGPTL*LYNHSL
Trigger: AAGGGAGTGATTATAAAGCCACAGGGTTGGTCCTAA...TTTTGTTGTACCTTCCCCATTTCTGTTCTGAACACTGTCACTGTAGAGATGACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR-3UTR CCA 90 bp ACACAGTACATTAATATCATTCTGTGTCACATACCATGCTATAGCATGTTTGCAATGAGGAAACAAGGATaGTCCAGAAGCCTACACGGA +
Preference number: 2 (lower is better)
Translates to: TQYINIILCHIPCYSMFAMRKQG*SRSLHG
Trigger: TCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCAT...TGCAAACATGCTATAGCATGGTATGTGACACAGAATGATATTAATGTACTGTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR CAA 90 bp AGTACATTAATATCATTCTGTGTCACATACCATGCTATAGCATGTTaGCACACAGGTCATCTCTACAGTGACAGTGTTCAGAACAGAAAT +
Preference number: 2 (lower is better)
Translates to: STLISFCVTYHAIAC*HTGHLYSDSVQNRN
Trigger: ATTTCTGTTCTGAACACTGTCACTGTAGAGATGACCTGTGTGCAAACATGCTATAGCATGGTATGTGACACAGAATGATATTAATGTACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR TCA 72 bp CTGCTTGGTCAGTGTATGGGCAGGCCACCAACAGGGTaGGCAGTGTCCCAGGACCATTCTGTCCCCATGAGG +
Preference number: 3 (lower is better)
Translates to: LLGQCMGRPPTG*AVSQDHSVPMR
Trigger: CCTCATGGGGACAGAATGGTCCTGGGACACTGCTCACCCTGTTGGTGGCCTGCCCATACACTGACCAAGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR TCA 72 bp CAGGGTGAGCAGTGTCCCAGGACCATTCTGTCCCCATaGGGAAACAAGGATGGTCCAGAAGCCTACACGGAG +
Preference number: 3 (lower is better)
Translates to: QGEQCPRTILSP*GNKDGPEAYTE
Trigger: CTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAATGGTCCTGGGACACTGCTCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR CCA 72 bp TCCCAGGACCATTCTGTCCCCATGAGGAAACAAGGATaGTCCAGAAGCCTACACGGAGCCCTGGTTTTGTGG +
Preference number: 3 (lower is better)
Translates to: SQDHSVPMRKQG*SRSLHGALVLW
Trigger: CCACAAAACCAGGGCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAATGGTCCTGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR-3UTR CAA 90 bp GTTGCTAAAGGGCAAGTCAGCAAAGCCCTTGGCCCAAACCATCACTTCACCAAGACAGCTACTCCTGCCTaGTCCATTAGCCTCTGCTTG +
Preference number: 3 (lower is better)
Translates to: VAKGQVSKALGPNHHFTKTATPA*SISLCL
Trigger: CAAGCAGAGGCTAATGGACAAGGCAGGAGTAGCTGT...CTTGGTGAAGTGATGGTTTGGGCCAAGGGCTTTGCTGACTTGCCCTTTAGCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR-3UTR CAA 90 bp ATGCCTTCAGAGACAGCTACTCTGCCCATCACAATGAGAAGACAAAGGACACTGCTGACATCAGACACTTaGGCTACTGTGCCCCAAGAC +
Preference number: 3 (lower is better)
Translates to: MPSETATLPITMRRQRTLLTSDT*ATVPQD
Trigger: GTCTTGGGGCACAGTAGCCAAAGTGTCTGATGTCAG...CAGTGTCCTTTGTCTTCTCATTGTGATGGGCAGAGTAGCTGTCTCTGAAGGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR CCA 72 bp CAATGGCCACCTCTGCCCACATTCATCTACTGTAACTaGAACATAGCAGAAGTTGCTAAAGGGCAAGTCAGC +
Preference number: 3 (lower is better)
Translates to: QWPPLPTFIYCN*NIAEVAKGQVS
Trigger: GCTGACTTGCCCTTTAGCAACTTCTGCTATGTTCCAGTTACAGTAGATGAATGTGGGCAGAGGTGGCCATTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR TCA 72 bp AGAAGACAAAGGACACTGCCCTTCCCACATCTCTACTaGAGATGTCATGCTCCAAGCAAGCAGAAATGGCTT +
Preference number: 3 (lower is better)
Translates to: RRQRTLPFPHLY*RCHAPSKQKWL
Trigger: AAGCCATTTCTGCTTGCTTGGAGCATGACATCTTCAGTAGAGATGTGGGAAGGGCAGTGTCCTTTGTCTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR-3UTR CAA 90 bp TCAGAGACAGCTACTCTGCCCATCACAATGAGAAGACAAAGGACACTGCCCTTCACAGAGGAGACATTCTaGTATAGGCTTTGTCATAAA +
Preference number: 3 (lower is better)
Translates to: SETATLPITMRRQRTLPFTEETF*YRLCHK
Trigger: TTTATGACAAAGCCTATACAAGAATGTCTCCTCTGT...GAAGGGCAGTGTCCTTTGTCTTCTCATTGTGATGGGCAGAGTAGCTGTCTCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR CCA 72 bp AAAACCAAAATACCAAATGAAACAGCAGTTTCATGTTaGCAAGGCTGTCCAGTGTTAGGACCAACCCTGTGG +
Preference number: 3 (lower is better)
Translates to: KTKIPNETAVSC*QGCPVLGPTLW
Trigger: CCACAGGGTTGGTCCTAACACTGGACAGCCTTGCCAACATGAAACTGCTGTTTCATTTGGTATTTTGGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp GGACCATTCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCCACCTTCTCCCAGCCTaGGAATTCGCCGGCGTCGAA +
Preference number: 4 (lower is better)
Translates to: GPFCPHEETRMVQKPTRSHLLPA*EFAGVE
Trigger: TTCGACGCCGGCGAATTCGCAGGCTGGGAGAAGGTG...GCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAATGGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR TCA 90 bp GTTGCTAAAGGGCAAGTCAGCAAAGCCCTTGGCCCAAACCATCACTTCACCAAGGACTGGGCGAGCACTTaGTCGCGAGCCACGTCTTCC +
Preference number: 4 (lower is better)
Translates to: VAKGQVSKALGPNHHFTKDWAST*SRATSS
Trigger: GGAAGACGTGGCTCGCGATCAAGTGCTCGCCCAGTC...CTTGGTGAAGTGATGGTTTGGGCCAAGGGCTTTGCTGACTTGCCCTTTAGCAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR TCA 90 bp TTCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCCCTGGTGGCAGTATAGCCCTCTaGGGTCAAAGCCTCCTTGCC +
Preference number: 4 (lower is better)
Translates to: FCPHEETRMVQKPTRSPGGSIAL*GQSLLA
Trigger: GGCAAGGAGGCTTTGACCTCAGAGGGCTATACTGCC...ACCAGGGCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp ATGCCTTCAGAGACAGCTACTCTGCCCATCACAATGAGAAGACAAAGGACACTGCGCACCTTGTACACCTaGCCGAAGCCGCCCGAGCCC +
Preference number: 4 (lower is better)
Translates to: MPSETATLPITMRRQRTLRTLYT*PKPPEP
Trigger: GGGCTCGGGCGGCTTCGGGCAGGTGTACAAGGTGCG...CAGTGTCCTTTGTCTTCTCATTGTGATGGGCAGAGTAGCTGTCTCTGAAGGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp TCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCCCTGGTTGGCAGCTCTGGGCGGTaGCCCTTTACCACTTTCATC +
Preference number: 4 (lower is better)
Translates to: SVPMRKQGWSRSLHGALVGSSGR*PFTTFI
Trigger: GATGAAAGTGGTAAAGGGCCACCGCCCAGAGCTGCC...AACCAGGGCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp TCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCCCTGGTTAGCCACGTCTTCCAGTaGACATGGCGCACCTTGTAC +
Preference number: 4 (lower is better)
Translates to: SVPMRKQGWSRSLHGALVSHVFQ*TWRTLY
Trigger: GTACAAGGTGCGCCATGTGCACTGGAAGACGTGGCT...AACCAGGGCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp GGACCATTCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCCATGAGAGTGGGACATaGCATTGCACTTGGCCAGCC +
Preference number: 4 (lower is better)
Translates to: GPFCPHEETRMVQKPTRSHESGT*HCTWPA
Trigger: GGCTGGCCAAGTGCAATGGCATGTCCCACTCTCATG...GCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAATGGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp GTTGCTAAAGGGCAAGTCAGCAAAGCCCTTGGCCCAAACCATCACTTCACCAAGCACGGCGGAGCAGGGTaGGCACAATGTTCTCCTGTC +
Preference number: 4 (lower is better)
Translates to: VAKGQVSKALGPNHHFTKHGGAG*AQCSPV
Trigger: GACAGGAGAACATTGTGCGCACCCTGCTCCGCCGTG...CTTGGTGAAGTGATGGTTTGGGCCAAGGGCTTTGCTGACTTGCCCTTTAGCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp TTCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCCCTGGTGGGCCTTCAAGAGTCTaGGAGATCCCAGAGTCCAAC +
Preference number: 4 (lower is better)
Translates to: FCPHEETRMVQKPTRSPGGPSRV*EIPESN
Trigger: GTTGGACTCTGGGATCTCCCAGACTCTTGAAGGCCC...ACCAGGGCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp GTTGCTAAAGGGCAAGTCAGCAAAGCCCTTGGCCCAAACCATCACTTCACCAAGGCAGCAGCCTTGTGCTaGCCTCATCCCCATTCTGGG +
Preference number: 4 (lower is better)
Translates to: VAKGQVSKALGPNHHFTKAAALC*PHPHSG
Trigger: CCCAGAATGGGGATGAGGCCAGCACAAGGCTGCTGC...CTTGGTGAAGTGATGGTTTGGGCCAAGGGCTTTGCTGACTTGCCCTTTAGCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp TTCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCCCTGGTCTCCCGTCTAGTGTCTaGGCATTCACACTCACCCCA +
Preference number: 4 (lower is better)
Translates to: FCPHEETRMVQKPTRSPGLPSSV*AFTLTP
Trigger: TGGGGTGAGTGTGAATGCCCAGACACTAGACGGGAG...ACCAGGGCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR CAA 72 bp AAGACAGCTACTCCTGCCTTGTCCATTAGCCTCTGCTaGGTCAGTGTATGGGCAGGCCACCAACAGGGTGAG +
Preference number: 4 (lower is better)
Translates to: KTATPALSISLC*VSVWAGHQQGE
Trigger: CTCACCCTGTTGGTGGCCTGCCCATACACTGACCAAGCAGAGGCTAATGGACAAGGCAGGAGTAGCTGTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR TCA 90 bp TCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCCCTGGTTTCCATGCTGAGGTCATaGGAGTGGGACATGCCATTG +
Preference number: 4 (lower is better)
Translates to: SVPMRKQGWSRSLHGALVSMLRS*EWDMPL
Trigger: CAATGGCATGTCCCACTCTCATGACCTCAGCATGGA...AACCAGGGCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR TCA 90 bp TCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCCCTGGTTCTTCATCCTTGGCATTaGCACTGGTCTTCCGGGCTA +
Preference number: 4 (lower is better)
Translates to: SVPMRKQGWSRSLHGALVLHPWH*HWSSGL
Trigger: TAGCCCGGAAGACCAGTGTCAATGCCAAGGATGAAG...AACCAGGGCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp TTCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCCCTGGTTGGACGATGGGAGCTTaGATTCAGAGGAACTTCGGC +
Preference number: 4 (lower is better)
Translates to: FCPHEETRMVQKPTRSPGWTMGA*IQRNFG
Trigger: GCCGAAGTTCCTCTGAATGCAAGCTCCCATCGTCCA...ACCAGGGCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp GTTGCTAAAGGGCAAGTCAGCAAAGCCCTTGGCCCAAACCATCACTTCACCAAGCAGGCATCCTTTCCCTaGAGGCCCACATCCACACCA +
Preference number: 4 (lower is better)
Translates to: VAKGQVSKALGPNHHFTKQASFP*RPTSTP
Trigger: TGGTGTGGATGTGGGCCTGCAGGGAAAGGATGCCTG...CTTGGTGAAGTGATGGTTTGGGCCAAGGGCTTTGCTGACTTGCCCTTTAGCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp TCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCCCTGGTTACACTCACCCCAGGCTaGTTGGCTAGCAGCTTAACA +
Preference number: 4 (lower is better)
Translates to: SVPMRKQGWSRSLHGALVTLTPG*LASSLT
Trigger: TGTTAAGCTGCTAGCCAAGCAGCCTGGGGTGAGTGT...AACCAGGGCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp TTCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCCCTGGTGTCTCTGCAGCAACATaGAGAGGTGTCTGTGCCTGT +
Preference number: 4 (lower is better)
Translates to: FCPHEETRMVQKPTRSPGVSAAT*RGVCAC
Trigger: ACAGGCACAGACACCTCTGCATGTTGCTGCAGAGAC...ACCAGGGCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp GGACCATTCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCAGGTCAAAGCCTCCTTaGCAGCACCACGATGCAAGA +
Preference number: 4 (lower is better)
Translates to: GPFCPHEETRMVQKPTRSRSKPP*QHHDAR
Trigger: TCTTGCATCGTGGTGCTGGCAAGGAGGCTTTGACCT...GCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAATGGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR TCA 90 bp GGACCATTCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCTGTGTGCTCCATGTTTaGGCAGTGTCTCCACAGTCT +
Preference number: 4 (lower is better)
Translates to: GPFCPHEETRMVQKPTRSCVLHV*AVSPQS
Trigger: AGACTGTGGAGACACTGCTCAAACATGGAGCACACA...GCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAATGGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp ATGCCTTCAGAGACAGCTACTCTGCCCATCACAATGAGAAGACAAAGGACACTGTCCCTGTCGTCGACGTaGAGACTGGGCGAGCACTTG +
Preference number: 4 (lower is better)
Translates to: MPSETATLPITMRRQRTLSLSST*RLGEHL
Trigger: CAAGTGCTCGCCCAGTCTGCACGTCGACGACAGGGA...CAGTGTCCTTTGTCTTCTCATTGTGATGGGCAGAGTAGCTGTCTCTGAAGGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp CCTTCCCACATCTCTACTGAAGATGTCATGCTCCAAGCAAGCAGAAATGGCTTGTGCTGGCAGGCTACATaGATGGGTGTTCGGCCCTCA +
Preference number: 4 (lower is better)
Translates to: PSHISTEDVMLQASRNGLCWQAT*MGVRPS
Trigger: TGAGGGCCGAACACCCATGCATGTAGCCTGCCAGCA...CAAGCCATTTCTGCTTGCTTGGAGCATGACATCTTCAGTAGAGATGTGGGAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp GGACCATTCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCACCAAGTCCACATCTTaGGGCTGTAGGATCTTCATC +
Preference number: 4 (lower is better)
Translates to: GPFCPHEETRMVQKPTRSTKSTS*GCRIFI
Trigger: GATGAAGATCCTACAGCCCCAAGATGTGGACTTGGT...GCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAATGGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp TCAGAGACAGCTACTCTGCCCATCACAATGAGAAGACAAAGGACACTGCCCTTCGTGGCAGCAGAGCTCTaGCCTCCTTGGAACTTGAGA +
Preference number: 4 (lower is better)
Translates to: SETATLPITMRRQRTLPFVAAEL*PPWNLR
Trigger: TCTCAAGTTCCAAGGAGGCCAGAGCTCTGCTGCCAC...GAAGGGCAGTGTCCTTTGTCTTCTCATTGTGATGGGCAGAGTAGCTGTCTCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR TCA 90 bp CCTTCCCACATCTCTACTGAAGATGTCATGCTCCAAGCAAGCAGAAATGGCTTGACAGGCCATCCATGCTaGGGTCATGAGAGTGGGACA +
Preference number: 4 (lower is better)
Translates to: PSHISTEDVMLQASRNGLTGHPC*GHESGT
Trigger: TGTCCCACTCTCATGACCTCAGCATGGATGGCCTGT...CAAGCCATTTCTGCTTGCTTGGAGCATGACATCTTCAGTAGAGATGTGGGAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR TCA 90 bp CCTTCCCACATCTCTACTGAAGATGTCATGCTCCAAGCAAGCAGAAATGGCTTGCCGCTCAAAAGACAGTaGCAGCGATCCTCTGGAGGA +
Preference number: 4 (lower is better)
Translates to: PSHISTEDVMLQASRNGLPLKRQ*QRSSGG
Trigger: TCCTCCAGAGGATCGCTGTCACTGTCTTTTGAGCGG...CAAGCCATTTCTGCTTGCTTGGAGCATGACATCTTCAGTAGAGATGTGGGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp TCTACTGAAGATGTCATGCTCCAAGCAAGCAGAAATGGCTTGCTCTATGGACAGAGAGCCTCTTGCCACTaGTGGACGATGGGAGCTTGC +
Preference number: 4 (lower is better)
Translates to: STEDVMLQASRNGLLYGQRASCH*WTMGAC
Trigger: GCAAGCTCCCATCGTCCAGCAGTGGCAAGAGGCTCT...CTGTCCATAGAGCAAGCCATTTCTGCTTGCTTGGAGCATGACATCTTCAGTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp ACCAAAACCAAAATACCAAATGAAACAGCAGTTTCATGTTGGCAAGGCTGTCCAGCCTCCACAGCCAGGTaGAGCAGGCTGGCACTGCTG +
Preference number: 4 (lower is better)
Translates to: TKTKIPNETAVSCWQGCPASTAR*SRLALL
Trigger: CAGCAGTGCCAGCCTGCTGCACCTGGCTGTGGAGGC...TGGACAGCCTTGCCAACATGAAACTGCTGTTTCATTTGGTATTTTGGTTTTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp GTTGCTAAAGGGCAAGTCAGCAAAGCCCTTGGCCCAAACCATCACTTCACCAAGAGTGTGTCCAGTCTCTaGAGCAACATGCAGAGGTGT +
Preference number: 4 (lower is better)
Translates to: VAKGQVSKALGPNHHFTKSVSSL*SNMQRC
Trigger: ACACCTCTGCATGTTGCTGCAGAGACTGGACACACT...CTTGGTGAAGTGATGGTTTGGGCCAAGGGCTTTGCTGACTTGCCCTTTAGCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp TCTACTGAAGATGTCATGCTCCAAGCAAGCAGAAATGGCTTGCTCTATGGACAGAGCAGCCAGGTGCAGTaGTGTCTGATTCAGGGGACC +
Preference number: 4 (lower is better)
Translates to: STEDVMLQASRNGLLYGQSSQVQ*CLIQGT
Trigger: GGTCCCCTGAATCAGACAGCACTGCACCTGGCTGCT...CTGTCCATAGAGCAAGCCATTTCTGCTTGCTTGGAGCATGACATCTTCAGTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp GGTCATCTCTACAGTGACAGTGTTCAGAACAGAAATGGGGAAGGTACAACAAAAGATGGGTGGCAGCTCTaGGCGGTGGCCCTTTACCAC +
Preference number: 4 (lower is better)
Translates to: GHLYSDSVQNRNGEGTTKDGWQL*AVALYH
Trigger: GTGGTAAAGGGCCACCGCCCAGAGCTGCCACCCATC...TTTTGTTGTACCTTCCCCATTTCTGTTCTGAACACTGTCACTGTAGAGATGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR TCA 90 bp ATGCCTTCAGAGACAGCTACTCTGCCCATCACAATGAGAAGACAAAGGACACTGTCTCCATGTACTCCATaGCCAAGCCGACAGGTTCCT +
Preference number: 4 (lower is better)
Translates to: MPSETATLPITMRRQRTLSPCTP*PSRQVP
Trigger: AGGAACCTGTCGGCTTGGTCATGGAGTACATGGAGA...CAGTGTCCTTTGTCTTCTCATTGTGATGGGCAGAGTAGCTGTCTCTGAAGGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR TCA 90 bp AAGCTACCATGTCACTCATATATTAAGAACCCACTATGCCTTCAGAGACAGCTATGTGAATGCCTGCCCTaGGCAGCCAGGTGCAGTGCG +
Preference number: 4 (lower is better)
Translates to: KLPCHSYIKNPLCLQRQLCECLP*AARCSA
Trigger: CGCACTGCACCTGGCTGCTCAGGGCAGGCATTCACA...TAGCTGTCTCTGAAGGCATAGTGGGTTCTTAATATATGAGTGACATGGTAGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp ATGCCTTCAGAGACAGCTACTCTGCCCATCACAATGAGAAGACAAAGGACACTGGTGTCCATTCTGGGCTaGCAGGTGCAAGGCAGTATA +
Preference number: 4 (lower is better)
Translates to: MPSETATLPITMRRQRTLVSILG*QVQGSI
Trigger: TATACTGCCTTGCACCTGGCAGCCCAGAATGGACAC...CAGTGTCCTTTGTCTTCTCATTGTGATGGGCAGAGTAGCTGTCTCTGAAGGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp TCTACTGAAGATGTCATGCTCCAAGCAAGCAGAAATGGCTTGCTCTATGGACAGGTCTTCCAGTGCACATaGCGCACCTTGTACACCTGC +
Preference number: 4 (lower is better)
Translates to: STEDVMLQASRNGLLYGQVFQCT*RTLYTC
Trigger: GCAGGTGTACAAGGTGCGCCATGTGCACTGGAAGAC...CTGTCCATAGAGCAAGCCATTTCTGCTTGCTTGGAGCATGACATCTTCAGTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR TCA 90 bp GTTGCTAAAGGGCAAGTCAGCAAAGCCCTTGGCCCAAACCATCACTTCACCAAGCAAAGTCAGAAATCTTaGCATGGTAGTGGGCATCCA +
Preference number: 4 (lower is better)
Translates to: VAKGQVSKALGPNHHFTKQSQKS*HGSGHP
Trigger: TGGATGCCCACTACCATGTCAAGATTTCTGACTTTG...CTTGGTGAAGTGATGGTTTGGGCCAAGGGCTTTGCTGACTTGCCCTTTAGCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp GGACCATTCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCTGTATACATCATGTTTaGTGTCAAACAAGCGGCTCT +
Preference number: 4 (lower is better)
Translates to: GPFCPHEETRMVQKPTRSCIHHV*CQTSGS
Trigger: AGAGCCGCTTGTTTGACACCAAACATGATGTATACA...GCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAATGGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp GGACCATTCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCCTTTTCATCTGCAAATaGCTTCTTCTGTGTAAGCAC +
Preference number: 4 (lower is better)
Translates to: GPFCPHEETRMVQKPTRSLFICK*LLLCKH
Trigger: GTGCTTACACAGAAGAAGCCATTTGCAGATGAAAAG...GCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAATGGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp ACACAGTACATTAATATCATTCTGTGTCACATACCATGCTATAGCATGTTTGCAGGTGGGCCGCACCTGTaGGTCTGCATGCCAGCACCG +
Preference number: 4 (lower is better)
Translates to: TQYINIILCHIPCYSMFAGGPHL*VCMPAP
Trigger: CGGTGCTGGCATGCAGACCCACAGGTGCGGCCCACC...TGCAAACATGCTATAGCATGGTATGTGACACAGAATGATATTAATGTACTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp AAGCTACCATGTCACTCATATATTAAGAACCCACTATGCCTTCAGAGACAGCTACCAGGTGCAGCAGGCTaGCACTGCTGTCTAGAACCA +
Preference number: 4 (lower is better)
Translates to: KLPCHSYIKNPLCLQRQLPGAAG*HCCLEP
Trigger: TGGTTCTAGACAGCAGTGCCAGCCTGCTGCACCTGG...TAGCTGTCTCTGAAGGCATAGTGGGTTCTTAATATATGAGTGACATGGTAGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR TCA 90 bp AAGCTACCATGTCACTCATATATTAAGAACCCACTATGCCTTCAGAGACAGCTACAGAGCACAGGTCAATaGGAATGCGAGCCACACGGT +
Preference number: 4 (lower is better)
Translates to: KLPCHSYIKNPLCLQRQLQSTGQ*ECEPHG
Trigger: ACCGTGTGGCTCGCATTCTCATTGACCTGTGCTCTG...TAGCTGTCTCTGAAGGCATAGTGGGTTCTTAATATATGAGTGACATGGTAGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR TCA 90 bp ACACAGTACATTAATATCATTCTGTGTCACATACCATGCTATAGCATGTTTGCAAGGTGCAGTGCTGTCTaGTTCAGGGGACCCCGAGCC +
Preference number: 4 (lower is better)
Translates to: TQYINIILCHIPCYSMFARCSAV*FRGPRA
Trigger: GGCTCGGGGTCCCCTGAATCAGACAGCACTGCACCT...TGCAAACATGCTATAGCATGGTATGTGACACAGAATGATATTAATGTACTGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp TCTCAAGCAAAGCTACCATGTCACTCATATATTAAGAACCCACTATGCCTTCAGGGCGGAGACATGCAATaGAGGAAGTTCATGCCCACG +
Preference number: 4 (lower is better)
Translates to: SQAKLPCHSYIKNPLCLQGGDMQ*RKFMPT
Trigger: CGTGGGCATGAACTTCCTGCATTGCATGTCTCCGCC...CTGAAGGCATAGTGGGTTCTTAATATATGAGTGACATGGTAGCTTTGCTTGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp TCTCAAGCAAAGCTACCATGTCACTCATATATTAAGAACCCACTATGCCTTCAGTTCTGGGCTGCAAAGTaGAGGGCAGTCCACTGGTCT +
Preference number: 4 (lower is better)
Translates to: SQAKLPCHSYIKNPLCLQFWAAK*RAVHWS
Trigger: AGACCAGTGGACTGCCCTGCACTTTGCAGCCCAGAA...CTGAAGGCATAGTGGGTTCTTAATATATGAGTGACATGGTAGCTTTGCTTGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp CAGATCCTCACAGGTCTCAAGCAAAGCTACCATGTCACTCATATATTAAGAACCTTGCCAGCACCACGATaGAAGAGTAGCCTGGCAGTA +
Preference number: 4 (lower is better)
Translates to: QILTGLKQSYHVTHILRTLPAPR*KSSLAV
Trigger: TACTGCCAGGCTACTCTTGCATCGTGGTGCTGGCAA...GGTTCTTAATATATGAGTGACATGGTAGCTTTGCTTGAGACCTGTGAGGATCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp TCTCAAGCAAAGCTACCATGTCACTCATATATTAAGAACCCACTATGCCTTCAGGCCACTGCTGGACGATaGGAGCTTGCATTCAGAGGA +
Preference number: 4 (lower is better)
Translates to: SQAKLPCHSYIKNPLCLQATAGR*ELAFRG
Trigger: TCCTCTGAATGCAAGCTCCCATCGTCCAGCAGTGGC...CTGAAGGCATAGTGGGTTCTTAATATATGAGTGACATGGTAGCTTTGCTTGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp ACTTCACCAAGAGAGCCTGAAAGAGCAAACTGTTTGACTAAACAACTTTTAGTAGCCAGGTGTCCATTCTaGGCTGCCAGGTGCAAGGCA +
Preference number: 4 (lower is better)
Translates to: TSPREPERANCLTKQLLVARCPF*AARCKA
Trigger: TGCCTTGCACCTGGCAGCCCAGAATGGACACCTGGC...TACTAAAAGTTGTTTAGTCAAACAGTTTGCTCTTTCAGGCTCTCTTGGTGAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR TCA 90 bp ACACAGTACATTAATATCATTCTGTGTCACATACCATGCTATAGCATGTTTGCACCAAGGCAATGGCTCTaGGGCCAGCAGCTTCTCCAG +
Preference number: 4 (lower is better)
Translates to: TQYINIILCHIPCYSMFAPRQWL*GQQLLQ
Trigger: CTGGAGAAGCTGCTGGCCTCAGAGCCATTGCCTTGG...TGCAAACATGCTATAGCATGGTATGTGACACAGAATGATATTAATGTACTGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp AAGCTACCATGTCACTCATATATTAAGAACCCACTATGCCTTCAGAGACAGCTAAATGCAGGAAGTTCATaGCCACGGCTGTCTCGTGCA +
Preference number: 4 (lower is better)
Translates to: KLPCHSYIKNPLCLQRQLNAGSS*PRLSRA
Trigger: TGCACGAGACAGCCGTGGGCATGAACTTCCTGCATT...TAGCTGTCTCTGAAGGCATAGTGGGTTCTTAATATATGAGTGACATGGTAGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp ACTTCACCAAGAGAGCCTGAAAGAGCAAACTGTTTGACTAAACAACTTTTAGTAGGCTTCAGGTCTAGGTaGAGCAGTGGCGGAGACATG +
Preference number: 4 (lower is better)
Translates to: TSPREPERANCLTKQLLVGFRSR*SSGGDM
Trigger: CATGTCTCCGCCACTGCTGCACCTAGACCTGAAGCC...TACTAAAAGTTGTTTAGTCAAACAGTTTGCTCTTTCAGGCTCTCTTGGTGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp GTTGCTAAAGGGCAAGTCAGCAAAGCCCTTGGCCCAAACCATCACTTCACCAAGGATGTTCTTTTCATCTaGAAATGGCTTCTTCTGTGT +
Preference number: 4 (lower is better)
Translates to: VAKGQVSKALGPNHHFTKDVLFI*KWLLLC
Trigger: ACACAGAAGAAGCCATTTGCAGATGAAAAGAACATC...CTTGGTGAAGTGATGGTTTGGGCCAAGGGCTTTGCTGACTTGCCCTTTAGCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp AAGCTACCATGTCACTCATATATTAAGAACCCACTATGCCTTCAGAGACAGCTAAAGCCGACAGGTTCCTaGCATATGCCGTACACAGGT +
Preference number: 4 (lower is better)
Translates to: KLPCHSYIKNPLCLQRQLKPTGS*HMPYTG
Trigger: ACCTGTGTACGGCATATGCCAGGAACCTGTCGGCTT...TAGCTGTCTCTGAAGGCATAGTGGGTTCTTAATATATGAGTGACATGGTAGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp AAGCTACCATGTCACTCATATATTAAGAACCCACTATGCCTTCAGAGACAGCTAACTAGCTTCTTCTTCTaGATGTCTGTGGGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: KLPCHSYIKNPLCLQRQLTSFFF*MSVGPR
Trigger: CCTGGGCCCCACAGACATCCAGAAGAAGAAGCTAGT...TAGCTGTCTCTGAAGGCATAGTGGGTTCTTAATATATGAGTGACATGGTAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp GGTCATCTCTACAGTGACAGTGTTCAGAACAGAAATGGGGAAGGTACAACAAAACACAGCCATATGCAGTaGTGTAGAGCCCTTCCTGTT +
Preference number: 4 (lower is better)
Translates to: GHLYSDSVQNRNGEGTTKHSHMQ*CRALPV
Trigger: AACAGGAAGGGCTCTACACCACTGCATATGGCTGTG...TTTTGTTGTACCTTCCCCATTTCTGTTCTGAACACTGTCACTGTAGAGATGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp AAGCTACCATGTCACTCATATATTAAGAACCCACTATGCCTTCAGAGACAGCTAGAGCTCTGGCCTCCTTaGAACTTGAGACTCTGCAAG +
Preference number: 4 (lower is better)
Translates to: KLPCHSYIKNPLCLQRQLELWPP*NLRLCK
Trigger: CTTGCAGAGTCTCAAGTTCCAAGGAGGCCAGAGCTC...TAGCTGTCTCTGAAGGCATAGTGGGTTCTTAATATATGAGTGACATGGTAGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR CAA 72 bp ACTGAAGATGTCATGCTCCAAGCAAGCAGAAATGGCTaGCTCTATGGACAGAGGAGACATTCTTGTATAGGC +
Preference number: 4 (lower is better)
Translates to: TEDVMLQASRNG*LYGQRRHSCIG
Trigger: GCCTATACAAGAATGTCTCCTCTGTCCATAGAGCAAGCCATTTCTGCTTGCTTGGAGCATGACATCTTCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR TCA 90 bp ACACAGTACATTAATATCATTCTGTGTCACATACCATGCTATAGCATGTTTGCATGTCTCCACAGTCTGTaGATGCCTGCCCTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: TQYINIILCHIPCYSMFACLHSL*MPALSS
Trigger: GCTGCTCAGGGCAGGCATTCACAGACTGTGGAGACA...TGCAAACATGCTATAGCATGGTATGTGACACAGAATGATATTAATGTACTGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp ACTTCACCAAGAGAGCCTGAAAGAGCAAACTGTTTGACTAAACAACTTTTAGTAATCCCCATTCTGGGCTaGAAAGTGCAGGGCAGTCCA +
Preference number: 4 (lower is better)
Translates to: TSPREPERANCLTKQLLVIPILG*KVQGSP
Trigger: TGGACTGCCCTGCACTTTGCAGCCCAGAATGGGGAT...TACTAAAAGTTGTTTAGTCAAACAGTTTGCTCTTTCAGGCTCTCTTGGTGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp ACTTCACCAAGAGAGCCTGAAAGAGCAAACTGTTTGACTAAACAACTTTTAGTAAGTGCGCTGAGGCCCTaGTCATCAGACAGGTCAATG +
Preference number: 4 (lower is better)
Translates to: TSPREPERANCLTKQLLVSALRP*SSDRSM
Trigger: CATTGACCTGTCTGATGAGCAGGGCCTCAGCGCACT...TACTAAAAGTTGTTTAGTCAAACAGTTTGCTCTTTCAGGCTCTCTTGGTGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
3UTR CAA 72 bp CAGAAATGGCTTGCTCTATGGACAGAGGAGACATTCTaGTATAGGCTTTGTCATAAAAGGCCTGCATCAGCA +
Preference number: 4 (lower is better)
Translates to: QKWLALWTEETF*YRLCHKRPASA
Trigger: TGCTGATGCAGGCCTTTTATGACAAAGCCTATACAAGAATGTCTCCTCTGTCCATAGAGCAAGCCATTTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp ACCAAAACCAAAATACCAAATGAAACAGCAGTTTCATGTTGGCAAGGCTGTCCACAGGTTCCTGGCATATaGCGTACACAGGTAGAATGT +
Preference number: 4 (lower is better)
Translates to: TKTKIPNETAVSCWQGCPQVPGI*RTQVEC
Trigger: ACATTCTACCTGTGTACGGCATATGCCAGGAACCTG...TGGACAGCCTTGCCAACATGAAACTGCTGTTTCATTTGGTATTTTGGTTTTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp ACTTCACCAAGAGAGCCTGAAAGAGCAAACTGTTTGACTAAACAACTTTTAGTAGCAGTGGCGGAGACATaGAATGCAGGAAGTTCATGC +
Preference number: 4 (lower is better)
Translates to: TSPREPERANCLTKQLLVAVAET*NAGSSC
Trigger: GCATGAACTTCCTGCATTGCATGTCTCCGCCACTGC...TACTAAAAGTTGTTTAGTCAAACAGTTTGCTCTTTCAGGCTCTCTTGGTGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp ACACAGTACATTAATATCATTCTGTGTCACATACCATGCTATAGCATGTTTGCAGCAACTCGGAGAGACTaGAGTCGTTATCGAAGGGGG +
Preference number: 4 (lower is better)
Translates to: TQYINIILCHIPCYSMFAATRRD*SRYRRG
Trigger: CCCCCTTCGATAACGACTGCAGTCTCTCCGAGTTGC...TGCAAACATGCTATAGCATGGTATGTGACACAGAATGATATTAATGTACTGTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp AAGCTACCATGTCACTCATATATTAAGAACCCACTATGCCTTCAGAGACAGCTAACATGCCATTGCACTTaGCCAGCCCAAAGTCAGAAA +
Preference number: 4 (lower is better)
Translates to: KLPCHSYIKNPLCLQRQLTCHCT*PAQSQK
Trigger: TTTCTGACTTTGGGCTGGCCAAGTGCAATGGCATGT...TAGCTGTCTCTGAAGGCATAGTGGGTTCTTAATATATGAGTGACATGGTAGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp ACACAGTACATTAATATCATTCTGTGTCACATACCATGCTATAGCATGTTTGCAGGCAGGCTACATGCATaGGTGTTCGGCCCTCAAAGT +
Preference number: 4 (lower is better)
Translates to: TQYINIILCHIPCYSMFAGRLHA*VFGPQS
Trigger: ACTTTGAGGGCCGAACACCCATGCATGTAGCCTGCC...TGCAAACATGCTATAGCATGGTATGTGACACAGAATGATATTAATGTACTGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR GCA 90 bp TCTCAAGCAAAGCTACCATGTCACTCATATATTAAGAACCCACTATGCCTTCAGCTGCAAGTTGATGTGTaGTCCATGTTTGAGCAGTGT +
Preference number: 4 (lower is better)
Translates to: SQAKLPCHSYIKNPLCLQLQVDV*SMFEQC
Trigger: ACACTGCTCAAACATGGAGCACACATCAACTTGCAG...CTGAAGGCATAGTGGGTTCTTAATATATGAGTGACATGGTAGCTTTGCTTGAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp ACACAGTACATTAATATCATTCTGTGTCACATACCATGCTATAGCATGTTTGCATGCAGGGCAGTCCACTaGTCTTCATCCTTGGCATTG +
Preference number: 4 (lower is better)
Translates to: TQYINIILCHIPCYSMFACRAVH*SSSLAL
Trigger: CAATGCCAAGGATGAAGACCAGTGGACTGCCCTGCA...TGCAAACATGCTATAGCATGGTATGTGACACAGAATGATATTAATGTACTGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CCA 90 bp ACACAGTACATTAATATCATTCTGTGTCACATACCATGCTATAGCATGTTTGCACACCCCAGATCACAATaGCGAAGCTGTATACATCAT +
Preference number: 4 (lower is better)
Translates to: TQYINIILCHIPCYSMFAHPRSQ*RSCIHH
Trigger: ATGATGTATACAGCTTCGCCATTGTGATCTGGGGTG...TGCAAACATGCTATAGCATGGTATGTGACACAGAATGATATTAATGTACTGTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 90 bp CTTGTACACCTGCCCGAAGCCGCCCGAGCCCACCTTCTCCCAGCCTaGGAATTCGCCGGCGTCGAAGGTGCGCAGCAGCCCCAGAGCCCA +
Preference number: 5 (lower is better)
Translates to: LVHLPEAARAHLLPA*EFAGVEGAQQPQSP
Trigger: TGGGCTCTGGGGCTGCTGCGCACCTTCGACGCCGGCGAATTCGCAGGCTGGGAGAAGGTGGGCTCGGGCGGCTTCGGGCAGGTGTACAAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 90 bp ACGTGCAGACTGGGCGAGCACTTGATCGCGAGCCACGTCTTCCAGTaGACATGGCGCACCTTGTACACCTGCCCGAAGCCGCCCGAGCCC +
Preference number: 5 (lower is better)
Translates to: TCRLGEHLIASHVFQ*TWRTLYTCPKPPEP
Trigger: GGGCTCGGGCGGCTTCGGGCAGGTGTACAAGGTGCGCCATGTGCACTGGAAGACGTGGCTCGCGATCAAGTGCTCGCCCAGTCTGCACGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 90 bp ATCGCGAGCCACGTCTTCCAGTGCACATGGCGCACCTTGTACACCTaGCCGAAGCCGCCCGAGCCCACCTTCTCCCAGCCTGCGAATTCG +
Preference number: 5 (lower is better)
Translates to: IASHVFQCTWRTLYT*PKPPEPTFSQPANS
Trigger: CGAATTCGCAGGCTGGGAGAAGGTGGGCTCGGGCGGCTTCGGGCAGGTGTACAAGGTGCGCCATGTGCACTGGAAGACGTGGCTCGCGAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 90 bp AGACTGGGCGAGCACTTGATCGCGAGCCACGTCTTCCAGTGCACATaGCGCACCTTGTACACCTGCCCGAAGCCGCCCGAGCCCACCTTC +
Preference number: 5 (lower is better)
Translates to: RLGEHLIASHVFQCT*RTLYTCPKPPEPTF
Trigger: GAAGGTGGGCTCGGGCGGCTTCGGGCAGGTGTACAAGGTGCGCCATGTGCACTGGAAGACGTGGCTCGCGATCAAGTGCTCGCCCAGTCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 90 bp TCCACACCACGGCGGAGCAGGGTGCGCACAATGTTCTCCTGTCCATaGTGGCAGGCTACATGCATGGGTGTTCGGCCCTCAAAGTCCACC +
Preference number: 5 (lower is better)
Translates to: STPRRSRVRTMFSCP*WQATCMGVRPSKST
Trigger: GGTGGACTTTGAGGGCCGAACACCCATGCATGTAGCCTGCCAGCATGGACAGGAGAACATTGTGCGCACCCTGCTCCGCCGTGGTGTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 90 bp CATCCTTTCCCTGCAGGCCCACATCCACACCACGGCGGAGCAGGGTaGGCACAATGTTCTCCTGTCCATGCTGGCAGGCTACATGCATGG +
Preference number: 5 (lower is better)
Translates to: HPFPAGPHPHHGGAG*AQCSPVHAGRLHAW
Trigger: CCATGCATGTAGCCTGCCAGCATGGACAGGAGAACATTGTGCGCACCCTGCTCCGCCGTGGTGTGGATGTGGGCCTGCAGGGAAAGGATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS TCA 90 bp GCTCCATTCGTTCCCTGTCGTCGACGTGCAGACTGGGCGAGCACTTaGTCGCGAGCCACGTCTTCCAGTGCACATGGCGCACCTTGTACA +
Preference number: 5 (lower is better)
Translates to: APFVPCRRRADWAST*SRATSSSAHGAPCT
Trigger: TGTACAAGGTGCGCCATGTGCACTGGAAGACGTGGCTCGCGATCAAGTGCTCGCCCAGTCTGCACGTCGACGACAGGGAACGAATGGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS TCA 90 bp ACCACCTCTGAGTGTCCACGGGCAGCAGCCAGGTGCAGTGCTGTCTaGTTCAGGGGACCCCGAGCCATCACATCAGCCTTCTCCTCTATG +
Preference number: 5 (lower is better)
Translates to: TTSECPRAAARCSAV*FRGPRAITSAFSSM
Trigger: CATAGAGGAGAAGGCTGATGTGATGGCTCGGGGTCCCCTGAATCAGACAGCACTGCACCTGGCTGCTGCCCGTGGACACTCAGAGGTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 90 bp TCAGAGGTAATTTCTTGGAAGGTGGGCCGCACCTGTGGGTCTGCATaGCAGCACCGTTGCATGAGCCCTATCAGGCTGGCACAGGCACGC +
Preference number: 5 (lower is better)
Translates to: SEVISWKVGRTCGSA*QHRCMSPIRLAQAR
Trigger: GCGTGCCTGTGCCAGCCTGATAGGGCTCATGCAACGGTGCTGGCATGCAGACCCACAGGTGCGGCCCACCTTCCAAGAAATTACCTCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 90 bp AGCAGCCACTTGACACACTCCTCCTGTCCGGCCTCCACAGCCAGGTaGAGCAGGCTGGCACTGCTGTCTAGAACCAAGTCCACATCTTGG +
Preference number: 5 (lower is better)
Translates to: SSHLTHSSCPASTAR*SRLALLSRTKSTSW
Trigger: CCAAGATGTGGACTTGGTTCTAGACAGCAGTGCCAGCCTGCTGCACCTGGCTGTGGAGGCCGGACAGGAGGAGTGTGTCAAGTGGCTGCT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 90 bp GGTGTCCTCCCGTCTAGTGTCTGGGCATTCACACTCACCCCAGGCTaGTTGGCTAGCAGCTTAACAATGGGAAGGTGGCCCTGCCAGGCA +
Preference number: 5 (lower is better)
Translates to: GVLPSSVWAFTLTPG*LASSLTMGRWPCQA
Trigger: TGCCTGGCAGGGCCACCTTCCCATTGTTAAGCTGCTAGCCAAGCAGCCTGGGGTGAGTGTGAATGCCCAGACACTAGACGGGAGGACACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 90 bp ACACCACGGCGGAGCAGGGTGCGCACAATGTTCTCCTGTCCATGCTaGCAGGCTACATGCATGGGTGTTCGGCCCTCAAAGTCCACCTCA +
Preference number: 5 (lower is better)
Translates to: TPRRSRVRTMFSCPC*QATCMGVRPSKSTS
Trigger: TGAGGTGGACTTTGAGGGCCGAACACCCATGCATGTAGCCTGCCAGCATGGACAGGAGAACATTGTGCGCACCCTGCTCCGCCGTGGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 90 bp TTCTTAGCTTCCTCCAGGAGCTCCATTCGTTCCCTGTCGTCGACGTaGAGACTGGGCGAGCACTTGATCGCGAGCCACGTCTTCCAGTGC +
Preference number: 5 (lower is better)
Translates to: FLASSRSSIRSLSST*RLGEHLIASHVFQC
Trigger: GCACTGGAAGACGTGGCTCGCGATCAAGTGCTCGCCCAGTCTGCACGTCGACGACAGGGAACGAATGGAGCTCCTGGAGGAAGCTAAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 90 bp ACATGCAATGCAGGAAGTTCATGCCCACGGCTGTCTCGTGCACGATaGGAAAGCGCAGGTCCCAAGGCAATGGCTCTGAGGCCAGCAGCT +
Preference number: 5 (lower is better)
Translates to: TCNAGSSCPRLSRAR*ESAGPKAMALRPAA
Trigger: AGCTGCTGGCCTCAGAGCCATTGCCTTGGGACCTGCGCTTTCGCATCGTGCACGAGACAGCCGTGGGCATGAACTTCCTGCATTGCATGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 90 bp TGGAGGAAAAGGCTGAGTCCACTGAGGACACCCCCGAGAGCCTCTTaGCACTGCTGGACGATGGGAGCTTGCATTCAGAGGAACTTCGGC +
Preference number: 5 (lower is better)
Translates to: WRKRLSPLRTPPRAS*HCWTMGACIQRNFG
Trigger: GCCGAAGTTCCTCTGAATGCAAGCTCCCATCGTCCAGCAGTGGCAAGAGGCTCTCGGGGGTGTCCTCAGTGGACTCAGCCTTTTCCTCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS TCA 90 bp CAAGTTGATGTGTGCTCCATGTTTGAGCAGTGTCTCCACAGTCTGTaGATGCCTGCCCTGAGCAGCCAGGTGCAGTGCGCTGAGGCCCTG +
Preference number: 5 (lower is better)
Translates to: QVDVCSMFEQCLHSL*MPALSSQVQCAEAL
Trigger: CAGGGCCTCAGCGCACTGCACCTGGCTGCTCAGGGCAGGCATTCACAGACTGTGGAGACACTGCTCAAACATGGAGCACACATCAACTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 90 bp TGTTTCAGAGGTAATTTCTTGGAAGGTGGGCCGCACCTGTGGGTCTaGATGCCAGCACCGTTGCATGAGCCCTATCAGGCTGGCACAGGC +
Preference number: 5 (lower is better)
Translates to: CFRGNFLEGGPHLWV*MPAPLHEPYQAGTG
Trigger: GCCTGTGCCAGCCTGATAGGGCTCATGCAACGGTGCTGGCATGCAGACCCACAGGTGCGGCCCACCTTCCAAGAAATTACCTCTGAAACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp TTCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCCCTGGTAGACTGGGCGAGCACTaGATCGCGAGCCACGTCTTC +
Preference number: 5 (lower is better)
Translates to: FCPHEETRMVQKPTRSPGRLGEH*IASHVF
Trigger: GAAGACGTGGCTCGCGATCAAGTGCTCGCCCAGTCT...ACCAGGGCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS TCA 90 bp GGGCTGCAAAGTGCAGGGCAGTCCACTGGTCTTCATCCTTGGCATTaGCACTGGTCTTCCGGGCTAGCAGTAGCTCCACAATTCCACGTC +
Preference number: 5 (lower is better)
Translates to: GLQSAGQSTGLHPWH*HWSSGLAVAPQFHV
Trigger: GACGTGGAATTGTGGAGCTACTGCTAGCCCGGAAGACCAGTGTCAATGCCAAGGATGAAGACCAGTGGACTGCCCTGCACTTTGCAGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS TCA 90 bp AGACAGGTCAATGAGGTCAGCACTGACCAGCTCTTCTACCACCTCTaGGTGTCCACGGGCAGCAGCCAGGTGCAGTGCTGTCTGATTCAG +
Preference number: 5 (lower is better)
Translates to: RQVNEVSTDQLFYHL*VSTGSSQVQCCLIQ
Trigger: CTGAATCAGACAGCACTGCACCTGGCTGCTGCCCGTGGACACTCAGAGGTGGTAGAAGAGCTGGTCAGTGCTGACCTCATTGACCTGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 90 bp AGCAGTAGCTCCACAATTCCACGTCCCTTCCGCTCCACAGCCATATaGAGTGGTGTAGAGCCCTTCCTGTTGGTCAGGTTGGGGTTGGCA +
Preference number: 5 (lower is better)
Translates to: SSSSTIPRPFRSTAI*SGVEPFLLVRLGLA
Trigger: TGCCAACCCCAACCTGACCAACAGGAAGGGCTCTACACCACTGCATATGGCTGTGGAGCGGAAGGGACGTGGAATTGTGGAGCTACTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 90 bp CTGCTGGTGTCCCCTGATATGATGGCATCCACTAGCTTCTTCTTCTaGATGTCTGTGGGGCCCAGGTCGCCTGTTGAAGCTTCCCGCTCA +
Preference number: 5 (lower is better)
Translates to: LLVSPDMMASTSFFF*MSVGPRSPVEASRS
Trigger: TGAGCGGGAAGCTTCAACAGGCGACCTGGGCCCCACAGACATCCAGAAGAAGAAGCTAGTGGATGCCATCATATCAGGGGACACCAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp TTCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCCCTGGTGTAGAGCCCTTCCTGTaGGTCAGGTTGGGGTTGGCA +
Preference number: 5 (lower is better)
Translates to: FCPHEETRMVQKPTRSPGVEPFL*VRLGLA
Trigger: TGCCAACCCCAACCTGACCAACAGGAAGGGCTCTAC...ACCAGGGCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS TCA 90 bp GCTCTGGAGGGAGGTAAGCGATTGTACCAAACAGGCCATCCATGCTaGGGTCATGAGAGTGGGACATGCCATTGCACTTGGCCAGCCCAA +
Preference number: 5 (lower is better)
Translates to: ALEGGKRLYQTGHPC*GHESGTCHCTWPAQ
Trigger: TTGGGCTGGCCAAGTGCAATGGCATGTCCCACTCTCATGACCTCAGCATGGATGGCCTGTTTGGTACAATCGCTTACCTCCCTCCAGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 90 bp AGCAGGGTGCGCACAATGTTCTCCTGTCCATGCTGGCAGGCTACATaGATGGGTGTTCGGCCCTCAAAGTCCACCTCATTGACAGAAGCA +
Preference number: 5 (lower is better)
Translates to: SRVRTMFSCPCWQAT*MGVRPSKSTSLTEA
Trigger: TGCTTCTGTCAATGAGGTGGACTTTGAGGGCCGAACACCCATGCATGTAGCCTGCCAGCATGGACAGGAGAACATTGTGCGCACCCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 90 bp CATTCAGAGGAACTTCGGCTGAGCTCTTCGGGGCCTTCAAGAGTCTaGGAGATCCCAGAGTCCAACTGTGACAGCAACTCGGAGAGACTG +
Preference number: 5 (lower is better)
Translates to: HSEELRLSSSGPSRV*EIPESNCDSNSERL
Trigger: CAGTCTCTCCGAGTTGCTGTCACAGTTGGACTCTGGGATCTCCCAGACTCTTGAAGGCCCCGAAGAGCTCAGCCGAAGTTCCTCTGAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp GGACCATTCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCGGCCTGGCCTCACTCTaGGACTCTAGAGAGCTTTTC +
Preference number: 5 (lower is better)
Translates to: GPFCPHEETRMVQKPTRSGLASL*DSRELF
Trigger: GAAAAGCTCTCTAGAGTCCAAGAGTGAGGCCAGGCC...GCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAATGGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS TCA 90 bp GGCAGGCTACATGCATGGGTGTTCGGCCCTCAAAGTCCACCTCATTaGCAGAAGCATTCTTCTCTAGCAGCAGCCTTGTGCTGGCCTCAT +
Preference number: 5 (lower is better)
Translates to: GRLHAWVFGPQSPPH*QKHSSLAAALCWPH
Trigger: ATGAGGCCAGCACAAGGCTGCTGCTAGAGAAGAATGCTTCTGTCAATGAGGTGGACTTTGAGGGCCGAACACCCATGCATGTAGCCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp GTTGCTAAAGGGCAAGTCAGCAAAGCCCTTGGCCCAAACCATCACTTCACCAAGGAGTGGGACATGCCATaGCACTTGGCCAGCCCAAAG +
Preference number: 5 (lower is better)
Translates to: VAKGQVSKALGPNHHFTKEWDMP*HLASPK
Trigger: CTTTGGGCTGGCCAAGTGCAATGGCATGTCCCACTC...CTTGGTGAAGTGATGGTTTGGGCCAAGGGCTTTGCTGACTTGCCCTTTAGCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp TTCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCCCTGGTTCTTCATCCTTGGCATaGACACTGGTCTTCCGGGCT +
Preference number: 5 (lower is better)
Translates to: FCPHEETRMVQKPTRSPGSSSLA*TLVFRA
Trigger: AGCCCGGAAGACCAGTGTCAATGCCAAGGATGAAGA...ACCAGGGCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp TCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCCCTGGTTTCCTCTATGAGCAGCTaGACAGTAGCCAGGTGTCCA +
Preference number: 5 (lower is better)
Translates to: SVPMRKQGWSRSLHGALVSSMSS*TVARCP
Trigger: TGGACACCTGGCTACTGTCAAGCTGCTCATAGAGGA...AACCAGGGCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS TCA 90 bp CTGGCCTCACTCTTGGACTCTAGAGAGCTTTTCTCGCCTGGCTCATaGGCCAGGTCTTTCACCTCCTCATCAGGCTTCTCACAAAGGTCT +
Preference number: 5 (lower is better)
Translates to: LASLLDSRELFSPGS*ARSFTSSSGFSQRS
Trigger: AGACCTTTGTGAGAAGCCTGATGAGGAGGTGAAAGACCTGGCTCATGAGCCAGGCGAGAAAAGCTCTCTAGAGTCCAAGAGTGAGGCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 90 bp AGCAACGTGGCAGCAGAGCTCTGGCCTCCTTGGAACTTGAGACTCTaGAAGTTGATGTGTGCTCCATGTTTGAGCAGTGTCTCCACAGTC +
Preference number: 5 (lower is better)
Translates to: SNVAAELWPPWNLRL*KLMCAPCLSSVSTV
Trigger: GACTGTGGAGACACTGCTCAAACATGGAGCACACATCAACTTGCAGAGTCTCAAGTTCCAAGGAGGCCAGAGCTCTGCTGCCACGTTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 90 bp AGGGAGCCTGTCTCCATGTACTCCATGACCAAGCCGACAGGTTCCTaGCATATGCCGTACACAGGTAGAATGTATCGGAACTTGGCCATC +
Preference number: 5 (lower is better)
Translates to: REPVSMYSMTKPTGS*HMPYTGRMYRNLAI
Trigger: GATGGCCAAGTTCCGATACATTCTACCTGTGTACGGCATATGCCAGGAACCTGTCGGCTTGGTCATGGAGTACATGGAGACAGGCTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 90 bp TCATCAGGCTTCTCACAAAGGTCTTCTGTTTCAGAGGTAATTTCTTaGAAGGTGGGCCGCACCTGTGGGTCTGCATGCCAGCACCGTTGC +
Preference number: 5 (lower is better)
Translates to: SSGFSQRSSVSEVIS*KVGRTCGSACQHRC
Trigger: GCAACGGTGCTGGCATGCAGACCCACAGGTGCGGCCCACCTTCCAAGAAATTACCTCTGAAACAGAAGACCTTTGTGAGAAGCCTGATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp GGACCATTCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCTTCCTGTTGGTCAGGTaGGGGTTGGCATTGTTAAGC +
Preference number: 5 (lower is better)
Translates to: GPFCPHEETRMVQKPTRSFLLVR*GLALLS
Trigger: GCTTAACAATGCCAACCCCAACCTGACCAACAGGAA...GCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAATGGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 90 bp AAGAGTAGCCTGGCAGTACTAGTGTGTCCAGTCTCTGCAGCAACATaGAGAGGTGTCTGTGCCTGTAGGCTGCAGATGTTAACATCAGAG +
Preference number: 5 (lower is better)
Translates to: KSSLAVLVCPVSAAT*RGVCACRLQMLTSE
Trigger: CTCTGATGTTAACATCTGCAGCCTACAGGCACAGACACCTCTGCATGTTGCTGCAGAGACTGGACACACTAGTACTGCCAGGCTACTCTT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp TCAGAGACAGCTACTCTGCCCATCACAATGAGAAGACAAAGGACACTGCCCTTCGAGGGAGGTAAGCGATaGTACCAAACAGGCCATCCA +
Preference number: 5 (lower is better)
Translates to: SETATLPITMRRQRTLPFEGGKR*YQTGHP
Trigger: TGGATGGCCTGTTTGGTACAATCGCTTACCTCCCTC...GAAGGGCAGTGTCCTTTGTCTTCTCATTGTGATGGGCAGAGTAGCTGTCTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp TCAGAGACAGCTACTCTGCCCATCACAATGAGAAGACAAAGGACACTGCCCTTCTTCAGAGGTAATTTCTaGGAAGGTGGGCCGCACCTG +
Preference number: 5 (lower is better)
Translates to: SETATLPITMRRQRTLPFFRGNF*EGGPHL
Trigger: CAGGTGCGGCCCACCTTCCAAGAAATTACCTCTGAA...GAAGGGCAGTGTCCTTTGTCTTCTCATTGTGATGGGCAGAGTAGCTGTCTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp AAGCTACCATGTCACTCATATATTAAGAACCCACTATGCCTTCAGAGACAGCTAACCCCCGAGAGCCTCTaGCCACTGCTGGACGATGGG +
Preference number: 5 (lower is better)
Translates to: KLPCHSYIKNPLCLQRQLTPESL*PLLDDG
Trigger: CCCATCGTCCAGCAGTGGCAAGAGGCTCTCGGGGGT...TAGCTGTCTCTGAAGGCATAGTGGGTTCTTAATATATGAGTGACATGGTAGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp CCTTCCCACATCTCTACTGAAGATGTCATGCTCCAAGCAAGCAGAAATGGCTTGCTCACCCCAGGCTGCTaGGCTAGCAGCTTAACAATG +
Preference number: 5 (lower is better)
Translates to: PSHISTEDVMLQASRNGLLTPGC*ASSLTM
Trigger: CATTGTTAAGCTGCTAGCCAAGCAGCCTGGGGTGAG...CAAGCCATTTCTGCTTGCTTGGAGCATGACATCTTCAGTAGAGATGTGGGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp GGACCATTCTGTCCCCATGAGGAAACAAGGATGGTCCAGAAGCCTACACGGAGCTTGAGACTCTGCAAGTaGATGTGTGCTCCATGTTTG +
Preference number: 5 (lower is better)
Translates to: GPFCPHEETRMVQKPTRSLRLCK*MCAPCL
Trigger: CAAACATGGAGCACACATCAACTTGCAGAGTCTCAA...GCTCCGTGTAGGCTTCTGGACCATCCTTGTTTCCTCATGGGGACAGAATGGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 90 bp ATCATGTTTGGTGTCAAACAAGCGGCTCTTCTCACGAATTCGCTCTaGAGGGAGGTAAGCGATTGTACCAAACAGGCCATCCATGCTGAG +
Preference number: 5 (lower is better)
Translates to: IMFGVKQAALLTNSL*REVSDCTKQAIHAE
Trigger: CTCAGCATGGATGGCCTGTTTGGTACAATCGCTTACCTCCCTCCAGAGCGAATTCGTGAGAAGAGCCGCTTGTTTGACACCAAACATGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp AAGCTACCATGTCACTCATATATTAAGAACCCACTATGCCTTCAGAGACAGCTATGCACATGGCGCACCTaGTACACCTGCCCGAAGCCG +
Preference number: 5 (lower is better)
Translates to: KLPCHSYIKNPLCLQRQLCTWRT*YTCPKP
Trigger: CGGCTTCGGGCAGGTGTACAAGGTGCGCCATGTGCA...TAGCTGTCTCTGAAGGCATAGTGGGTTCTTAATATATGAGTGACATGGTAGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp TCTACTGAAGATGTCATGCTCCAAGCAAGCAGAAATGGCTTGCTCTATGGACAGTTAAGCAGCAGCCACTaGACACACTCCTCCTGTCCG +
Preference number: 5 (lower is better)
Translates to: STEDVMLQASRNGLLYGQLSSSH*THSSCP
Trigger: CGGACAGGAGGAGTGTGTCAAGTGGCTGCTGCTTAA...CTGTCCATAGAGCAAGCCATTTCTGCTTGCTTGGAGCATGACATCTTCAGTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp CCTTCCCACATCTCTACTGAAGATGTCATGCTCCAAGCAAGCAGAAATGGCTTGAGGTTGGGGTTGGCATaGTTAAGCAGCAGCCACTTG +
Preference number: 5 (lower is better)
Translates to: PSHISTEDVMLQASRNGLRLGLA*LSSSHL
Trigger: CAAGTGGCTGCTGCTTAACAATGCCAACCCCAACCT...CAAGCCATTTCTGCTTGCTTGGAGCATGACATCTTCAGTAGAGATGTGGGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp ATGCCTTCAGAGACAGCTACTCTGCCCATCACAATGAGAAGACAAAGGACACTGAGAGCTCTGGCCTCCTaGGAACTTGAGACTCTGCAA +
Preference number: 5 (lower is better)
Translates to: MPSETATLPITMRRQRTLRALAS*ELETLQ
Trigger: TTGCAGAGTCTCAAGTTCCAAGGAGGCCAGAGCTCT...CAGTGTCCTTTGTCTTCTCATTGTGATGGGCAGAGTAGCTGTCTCTGAAGGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp TCTACTGAAGATGTCATGCTCCAAGCAAGCAGAAATGGCTTGCTCTATGGACAGATGTGTGCTCCATGTTaGAGCAGTGTCTCCACAGTC +
Preference number: 5 (lower is better)
Translates to: STEDVMLQASRNGLLYGQMCAPC*SSVSTV
Trigger: GACTGTGGAGACACTGCTCAAACATGGAGCACACAT...CTGTCCATAGAGCAAGCCATTTCTGCTTGCTTGGAGCATGACATCTTCAGTAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp AAGCTACCATGTCACTCATATATTAAGAACCCACTATGCCTTCAGAGACAGCTATTGGTCAGGTTGGGGTaGGCATTGTTAAGCAGCAGC +
Preference number: 5 (lower is better)
Translates to: KLPCHSYIKNPLCLQRQLLVRLG*ALLSSS
Trigger: GCTGCTGCTTAACAATGCCAACCCCAACCTGACCAA...TAGCTGTCTCTGAAGGCATAGTGGGTTCTTAATATATGAGTGACATGGTAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp ACTTCACCAAGAGAGCCTGAAAGAGCAAACTGTTTGACTAAACAACTTTTAGTATCTCTAGCAGCAGCCTaGTGCTGGCCTCATCCCCAT +
Preference number: 5 (lower is better)
Translates to: TSPREPERANCLTKQLLVSLAAA*CWPHPH
Trigger: ATGGGGATGAGGCCAGCACAAGGCTGCTGCTAGAGA...TACTAAAAGTTGTTTAGTCAAACAGTTTGCTCTTTCAGGCTCTCTTGGTGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp TCTACTGAAGATGTCATGCTCCAAGCAAGCAGAAATGGCTTGCTCTATGGACAGAGAATGTATCGGAACTaGGCCATCTCCATCTTCTTA +
Preference number: 5 (lower is better)
Translates to: STEDVMLQASRNGLLYGQRMYRN*AISIFL
Trigger: TAAGAAGATGGAGATGGCCAAGTTCCGATACATTCT...CTGTCCATAGAGCAAGCCATTTCTGCTTGCTTGGAGCATGACATCTTCAGTAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS-3UTR CAA 90 bp ACACAGTACATTAATATCATTCTGTGTCACATACCATGCTATAGCATGTTTGCATGCATGCCAGCACCGTaGCATGAGCCCTATCAGGCT +
Preference number: 5 (lower is better)
Translates to: TQYINIILCHIPCYSMFACMPAP*HEPYQA
Trigger: AGCCTGATAGGGCTCATGCAACGGTGCTGGCATGCA...TGCAAACATGCTATAGCATGGTATGTGACACAGAATGATATTAATGTACTGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 72 bp CTGCCCGAAGCCGCCCGAGCCCACCTTCTCCCAGCCTaGGAATTCGCCGGCGTCGAAGGTGCGCAGCAGCCC +
Preference number: 6 (lower is better)
Translates to: LPEAARAHLLPA*EFAGVEGAQQP
Trigger: GGGCTGCTGCGCACCTTCGACGCCGGCGAATTCGCAGGCTGGGAGAAGGTGGGCTCGGGCGGCTTCGGGCAG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 72 bp GTGGGCCGCACCTGTGGGTCTGCATGCCAGCACCGTTaGATGAGCCCTATCAGGCTGGCACAGGCACGCGGC +
Preference number: 6 (lower is better)
Translates to: VGRTCGSACQHR*MSPIRLAQARG
Trigger: GCCGCGTGCCTGTGCCAGCCTGATAGGGCTCATGCAACGGTGCTGGCATGCAGACCCACAGGTGCGGCCCAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 72 bp GGTGGGCCGCACCTGTGGGTCTGCATGCCAGCACCGTaGCATGAGCCCTATCAGGCTGGCACAGGCACGCGG +
Preference number: 6 (lower is better)
Translates to: GGPHLWVCMPAP*HEPYQAGTGTR
Trigger: CCGCGTGCCTGTGCCAGCCTGATAGGGCTCATGCAACGGTGCTGGCATGCAGACCCACAGGTGCGGCCCACC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 72 bp CACGTCTTCCAGTGCACATGGCGCACCTTGTACACCTaGCCGAAGCCGCCCGAGCCCACCTTCTCCCAGCCT +
Preference number: 6 (lower is better)
Translates to: HVFQCTWRTLYT*PKPPEPTFSQP
Trigger: AGGCTGGGAGAAGGTGGGCTCGGGCGGCTTCGGGCAGGTGTACAAGGTGCGCCATGTGCACTGGAAGACGTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 72 bp ATCGCGAGCCACGTCTTCCAGTGCACATGGCGCACCTaGTACACCTGCCCGAAGCCGCCCGAGCCCACCTTC +
Preference number: 6 (lower is better)
Translates to: IASHVFQCTWRT*YTCPKPPEPTF
Trigger: GAAGGTGGGCTCGGGCGGCTTCGGGCAGGTGTACAAGGTGCGCCATGTGCACTGGAAGACGTGGCTCGCGAT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 90 bp GAGCACTTGATCGCGAGCCACGTCTTCCAGTGCACATGGCGCACCTaGTACACCTGCCCGAAGCCGCCCGAGCCCACCTTCTCCCAGCCT +
Preference number: 6 (lower is better)
Translates to: EHLIASHVFQCTWRT*YTCPKPPEPTFSQP
Trigger: AGGCTGGGAGAAGGTGGGCTCGGGCGGCTTCGGGCAGGTGTACAAGGTGCGCCATGTGCACTGGAAGACGTGGCTCGCGATCAAGTGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 72 bp CTGGGCGAGCACTTGATCGCGAGCCACGTCTTCCAGTaGACATGGCGCACCTTGTACACCTGCCCGAAGCCG +
Preference number: 6 (lower is better)
Translates to: LGEHLIASHVFQ*TWRTLYTCPKP
Trigger: CGGCTTCGGGCAGGTGTACAAGGTGCGCCATGTGCACTGGAAGACGTGGCTCGCGATCAAGTGCTCGCCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 72 bp GAGCACTTGATCGCGAGCCACGTCTTCCAGTGCACATaGCGCACCTTGTACACCTGCCCGAAGCCGCCCGAG +
Preference number: 6 (lower is better)
Translates to: EHLIASHVFQCT*RTLYTCPKPPE
Trigger: CTCGGGCGGCTTCGGGCAGGTGTACAAGGTGCGCCATGTGCACTGGAAGACGTGGCTCGCGATCAAGTGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 72 bp GGCACGCGGCCGGGGTCTGCAGATGGGTGGCAGCTCTaGGCGGTGGCCCTTTACCACTTTCATCATGATGTG +
Preference number: 6 (lower is better)
Translates to: GTRPGSADGWQL*AVALYHFHHDV
Trigger: CACATCATGATGAAAGTGGTAAAGGGCCACCGCCCAGAGCTGCCACCCATCTGCAGACCCCGGCCGCGTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 72 bp CGTTCCCTGTCGTCGACGTGCAGACTGGGCGAGCACTaGATCGCGAGCCACGTCTTCCAGTGCACATGGCGC +
Preference number: 6 (lower is better)
Translates to: RSLSSTCRLGEH*IASHVFQCTWR
Trigger: GCGCCATGTGCACTGGAAGACGTGGCTCGCGATCAAGTGCTCGCCCAGTCTGCACGTCGACGACAGGGAACG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS TCA 72 bp GTTCCCTGTCGTCGACGTGCAGACTGGGCGAGCACTTaGTCGCGAGCCACGTCTTCCAGTGCACATGGCGCA +
Preference number: 6 (lower is better)
Translates to: VPCRRRADWAST*SRATSSSAHGA
Trigger: TGCGCCATGTGCACTGGAAGACGTGGCTCGCGATCAAGTGCTCGCCCAGTCTGCACGTCGACGACAGGGAAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 72 bp CGGCGGAGCAGGGTGCGCACAATGTTCTCCTGTCCATaGTGGCAGGCTACATGCATGGGTGTTCGGCCCTCA +
Preference number: 6 (lower is better)
Translates to: RRSRVRTMFSCP*WQATCMGVRPS
Trigger: TGAGGGCCGAACACCCATGCATGTAGCCTGCCAGCATGGACAGGAGAACATTGTGCGCACCCTGCTCCGCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS TCA 72 bp CACGATGCGAAAGCGCAGGTCCCAAGGCAATGGCTCTaGGGCCAGCAGCTTCTCCAGGGAGCCTGTCTCCAT +
Preference number: 6 (lower is better)
Translates to: HDAKAQVPRQWL*GQQLLQGACLH
Trigger: ATGGAGACAGGCTCCCTGGAGAAGCTGCTGGCCTCAGAGCCATTGCCTTGGGACCTGCGCTTTCGCATCGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 72 bp GCAGGAAGTTCATGCCCACGGCTGTCTCGTGCACGATaGGAAAGCGCAGGTCCCAAGGCAATGGCTCTGAGG +
Preference number: 6 (lower is better)
Translates to: AGSSCPRLSRAR*ESAGPKAMALR
Trigger: CCTCAGAGCCATTGCCTTGGGACCTGCGCTTTCGCATCGTGCACGAGACAGCCGTGGGCATGAACTTCCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 72 bp GTCCGGCCTCCACAGCCAGGTGCAGCAGGCTGGCACTaGTGTCTAGAACCAAGTCCACATCTTGGGGCTGTA +
Preference number: 6 (lower is better)
Translates to: VRPPQPGAAGWH*CLEPSPHLGAV
Trigger: TACAGCCCCAAGATGTGGACTTGGTTCTAGACAGCAGTGCCAGCCTGCTGCACCTGGCTGTGGAGGCCGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 72 bp TTGACACACTCCTCCTGTCCGGCCTCCACAGCCAGGTaGAGCAGGCTGGCACTGCTGTCTAGAACCAAGTCC +
Preference number: 6 (lower is better)
Translates to: LTHSSCPASTAR*SRLALLSRTKS
Trigger: GGACTTGGTTCTAGACAGCAGTGCCAGCCTGCTGCACCTGGCTGTGGAGGCCGGACAGGAGGAGTGTGTCAA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 72 bp GGACACCCCCGAGAGCCTCTTGCCACTGCTGGACGATaGGAGCTTGCATTCAGAGGAACTTCGGCTGAGCTC +
Preference number: 6 (lower is better)
Translates to: GHPREPLATAGR*ELAFRGTSAEL
Trigger: GAGCTCAGCCGAAGTTCCTCTGAATGCAAGCTCCCATCGTCCAGCAGTGGCAAGAGGCTCTCGGGGGTGTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 72 bp CCACTGAGGACACCCCCGAGAGCCTCTTGCCACTGCTaGACGATGGGAGCTTGCATTCAGAGGAACTTCGGC +
Preference number: 6 (lower is better)
Translates to: PLRTPPRASCHC*TMGACIQRNFG
Trigger: GCCGAAGTTCCTCTGAATGCAAGCTCCCATCGTCCAGCAGTGGCAAGAGGCTCTCGGGGGTGTCCTCAGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 72 bp CCCGAGAGCCTCTTGCCACTGCTGGACGATGGGAGCTaGCATTCAGAGGAACTTCGGCTGAGCTCTTCGGGG +
Preference number: 6 (lower is better)
Translates to: PESLLPLLDDGS*HSEELRLSSSG
Trigger: CCCCGAAGAGCTCAGCCGAAGTTCCTCTGAATGCAAGCTCCCATCGTCCAGCAGTGGCAAGAGGCTCTCGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 90 bp AGCTCCATTCGTTCCCTGTCGTCGACGTGCAGACTGGGCGAGCACTaGATCGCGAGCCACGTCTTCCAGTGCACATGGCGCACCTTGTAC +
Preference number: 6 (lower is better)
Translates to: SSIRSLSSTCRLGEH*IASHVFQCTWRTLY
Trigger: GTACAAGGTGCGCCATGTGCACTGGAAGACGTGGCTCGCGATCAAGTGCTCGCCCAGTCTGCACGTCGACGACAGGGAACGAATGGAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 90 bp GAGGACACCCCCGAGAGCCTCTTGCCACTGCTGGACGATGGGAGCTaGCATTCAGAGGAACTTCGGCTGAGCTCTTCGGGGCCTTCAAGA +
Preference number: 6 (lower is better)
Translates to: EDTPESLLPLLDDGS*HSEELRLSSSGPSR
Trigger: TCTTGAAGGCCCCGAAGAGCTCAGCCGAAGTTCCTCTGAATGCAAGCTCCCATCGTCCAGCAGTGGCAAGAGGCTCTCGGGGGTGTCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 72 bp ATTTCTTGGAAGGTGGGCCGCACCTGTGGGTCTGCATaGCAGCACCGTTGCATGAGCCCTATCAGGCTGGCA +
Preference number: 6 (lower is better)
Translates to: ISWKVGRTCGSA*QHRCMSPIRLA
Trigger: TGCCAGCCTGATAGGGCTCATGCAACGGTGCTGGCATGCAGACCCACAGGTGCGGCCCACCTTCCAAGAAAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 72 bp GGCCGGGGTCTGCAGATGGGTGGCAGCTCTGGGCGGTaGCCCTTTACCACTTTCATCATGATGTGTAGGATG +
Preference number: 6 (lower is better)
Translates to: GRGLQMGGSSGR*PFTTFIMMCRM
Trigger: CATCCTACACATCATGATGAAAGTGGTAAAGGGCCACCGCCCAGAGCTGCCACCCATCTGCAGACCCCGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 90 bp CTGGAGGAAAAGGCTGAGTCCACTGAGGACACCCCCGAGAGCCTCTaGCCACTGCTGGACGATGGGAGCTTGCATTCAGAGGAACTTCGG +
Preference number: 6 (lower is better)
Translates to: LEEKAESTEDTPESL*PLLDDGSLHSEELR
Trigger: CCGAAGTTCCTCTGAATGCAAGCTCCCATCGTCCAGCAGTGGCAAGAGGCTCTCGGGGGTGTCCTCAGTGGACTCAGCCTTTTCCTCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 90 bp AGGGGACCCCGAGCCATCACATCAGCCTTCTCCTCTATGAGCAGCTaGACAGTAGCCAGGTGTCCATTCTGGGCTGCCAGGTGCAAGGCA +
Preference number: 6 (lower is better)
Translates to: RGPRAITSAFSSMSS*TVARCPFWAARCKA
Trigger: TGCCTTGCACCTGGCAGCCCAGAATGGACACCTGGCTACTGTCAAGCTGCTCATAGAGGAGAAGGCTGATGTGATGGCTCGGGGTCCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 90 bp TGCAGTGGTGTAGAGCCCTTCCTGTTGGTCAGGTTGGGGTTGGCATaGTTAAGCAGCAGCCACTTGACACACTCCTCCTGTCCGGCCTCC +
Preference number: 6 (lower is better)
Translates to: CSGVEPFLLVRLGLA*LSSSHLTHSSCPAS
Trigger: GGAGGCCGGACAGGAGGAGTGTGTCAAGTGGCTGCTGCTTAACAATGCCAACCCCAACCTGACCAACAGGAAGGGCTCTACACCACTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 72 bp GGTAATTTCTTGGAAGGTGGGCCGCACCTGTGGGTCTaGATGCCAGCACCGTTGCATGAGCCCTATCAGGCT +
Preference number: 6 (lower is better)
Translates to: GNFLEGGPHLWV*MPAPLHEPYQA
Trigger: AGCCTGATAGGGCTCATGCAACGGTGCTGGCATGCAGACCCACAGGTGCGGCCCACCTTCCAAGAAATTACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 72 bp AGTCCACTGAGGACACCCCCGAGAGCCTCTTGCCACTaGTGGACGATGGGAGCTTGCATTCAGAGGAACTTC +
Preference number: 6 (lower is better)
Translates to: SPLRTPPRASCH*WTMGACIQRNF
Trigger: GAAGTTCCTCTGAATGCAAGCTCCCATCGTCCAGCAGTGGCAAGAGGCTCTCGGGGGTGTCCTCAGTGGACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 72 bp GCGTCGGAGCAACGTGGCAGCAGAGCTCTGGCCTCCTaGGAACTTGAGACTCTGCAAGTTGATGTGTGCTCC +
Preference number: 6 (lower is better)
Translates to: ASEQRGSRALAS*ELETLQVDVCS
Trigger: GGAGCACACATCAACTTGCAGAGTCTCAAGTTCCAAGGAGGCCAGAGCTCTGCTGCCACGTTGCTCCGACGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS TCA 72 bp TGGACGATGGGAGCTTGCATTCAGAGGAACTTCGGCTaGGCTCTTCGGGGCCTTCAAGAGTCTGGGAGATCC +
Preference number: 6 (lower is better)
Translates to: WTMGACIQRNFG*ALRGLQESGRS
Trigger: GGATCTCCCAGACTCTTGAAGGCCCCGAAGAGCTCAGCCGAAGTTCCTCTGAATGCAAGCTCCCATCGTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 72 bp CCCTCTGAGGTCAAAGCCTCCTTGCCAGCACCACGATaGAAGAGTAGCCTGGCAGTACTAGTGTGTCCAGTC +
Preference number: 6 (lower is better)
Translates to: PSEVKASLPAPR*KSSLAVLVCPV
Trigger: GACTGGACACACTAGTACTGCCAGGCTACTCTTGCATCGTGGTGCTGGCAAGGAGGCTTTGACCTCAGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 72 bp GCAAGGCAGTATAGCCCTCTGAGGTCAAAGCCTCCTTaGCAGCACCACGATGCAAGAGTAGCCTGGCAGTAC +
Preference number: 6 (lower is better)
Translates to: ARQYSPLRSKPP*QHHDARVAWQY
Trigger: GTACTGCCAGGCTACTCTTGCATCGTGGTGCTGGCAAGGAGGCTTTGACCTCAGAGGGCTATACTGCCTTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 72 bp GAACTTCGGCTGAGCTCTTCGGGGCCTTCAAGAGTCTaGGAGATCCCAGAGTCCAACTGTGACAGCAACTCG +
Preference number: 6 (lower is better)
Translates to: ELRLSSSGPSRV*EIPESNCDSNS
Trigger: CGAGTTGCTGTCACAGTTGGACTCTGGGATCTCCCAGACTCTTGAAGGCCCCGAAGAGCTCAGCCGAAGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 72 bp CGTCGGAGCAACGTGGCAGCAGAGCTCTGGCCTCCTTaGAACTTGAGACTCTGCAAGTTGATGTGTGCTCCA +
Preference number: 6 (lower is better)
Translates to: RRSNVAAELWPP*NLRLCKLMCAP
Trigger: TGGAGCACACATCAACTTGCAGAGTCTCAAGTTCCAAGGAGGCCAGAGCTCTGCTGCCACGTTGCTCCGACG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 72 bp GCTGCAAAGTGCAGGGCAGTCCACTGGTCTTCATCCTaGGCATTGACACTGGTCTTCCGGGCTAGCAGTAGC +
Preference number: 6 (lower is better)
Translates to: AAKCRAVHWSSS*ALTLVFRASSS
Trigger: GCTACTGCTAGCCCGGAAGACCAGTGTCAATGCCAAGGATGAAGACCAGTGGACTGCCCTGCACTTTGCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 90 bp CCCTTCCGCTCCACAGCCATATGCAGTGGTGTAGAGCCCTTCCTGTaGGTCAGGTTGGGGTTGGCATTGTTAAGCAGCAGCCACTTGACA +
Preference number: 6 (lower is better)
Translates to: PFRSTAICSGVEPFL*VRLGLALLSSSHLT
Trigger: TGTCAAGTGGCTGCTGCTTAACAATGCCAACCCCAACCTGACCAACAGGAAGGGCTCTACACCACTGCATATGGCTGTGGAGCGGAAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 90 bp TGGGCTGCAAAGTGCAGGGCAGTCCACTGGTCTTCATCCTTGGCATaGACACTGGTCTTCCGGGCTAGCAGTAGCTCCACAATTCCACGT +
Preference number: 6 (lower is better)
Translates to: WAAKCRAVHWSSSLA*TLVFRASSSSTIPR
Trigger: ACGTGGAATTGTGGAGCTACTGCTAGCCCGGAAGACCAGTGTCAATGCCAAGGATGAAGACCAGTGGACTGCCCTGCACTTTGCAGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS TCA 72 bp GCGATTGTACCAAACAGGCCATCCATGCTGAGGTCATaGGAGTGGGACATGCCATTGCACTTGGCCAGCCCA +
Preference number: 6 (lower is better)
Translates to: AIVPNRPSMLRS*EWDMPLHLASP
Trigger: TGGGCTGGCCAAGTGCAATGGCATGTCCCACTCTCATGACCTCAGCATGGATGGCCTGTTTGGTACAATCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS TCA 72 bp AGTGCAGGGCAGTCCACTGGTCTTCATCCTTGGCATTaGCACTGGTCTTCCGGGCTAGCAGTAGCTCCACAA +
Preference number: 6 (lower is better)
Translates to: SAGQSTGLHPWH*HWSSGLAVAPQ
Trigger: TTGTGGAGCTACTGCTAGCCCGGAAGACCAGTGTCAATGCCAAGGATGAAGACCAGTGGACTGCCCTGCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 72 bp TCCACAATTCCACGTCCCTTCCGCTCCACAGCCATATaGAGTGGTGTAGAGCCCTTCCTGTTGGTCAGGTTG +
Preference number: 6 (lower is better)
Translates to: STIPRPFRSTAI*SGVEPFLLVRL
Trigger: CAACCTGACCAACAGGAAGGGCTCTACACCACTGCATATGGCTGTGGAGCGGAAGGGACGTGGAATTGTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 72 bp CGCACAATGTTCTCCTGTCCATGCTGGCAGGCTACATaGATGGGTGTTCGGCCCTCAAAGTCCACCTCATTG +
Preference number: 6 (lower is better)
Translates to: RTMFSCPCWQAT*MGVRPSKSTSL
Trigger: CAATGAGGTGGACTTTGAGGGCCGAACACCCATGCATGTAGCCTGCCAGCATGGACAGGAGAACATTGTGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 72 bp TTCAGAGGTAATTTCTTGGAAGGTGGGCCGCACCTGTaGGTCTGCATGCCAGCACCGTTGCATGAGCCCTAT +
Preference number: 6 (lower is better)
Translates to: FRGNFLEGGPHL*VCMPAPLHEPY
Trigger: ATAGGGCTCATGCAACGGTGCTGGCATGCAGACCCACAGGTGCGGCCCACCTTCCAAGAAATTACCTCTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 72 bp AATTCCACGTCCCTTCCGCTCCACAGCCATATGCAGTaGTGTAGAGCCCTTCCTGTTGGTCAGGTTGGGGTT +
Preference number: 6 (lower is better)
Translates to: NSTSLPLHSHMQ*CRALPVGQVGV
Trigger: AACCCCAACCTGACCAACAGGAAGGGCTCTACACCACTGCATATGGCTGTGGAGCGGAAGGGACGTGGAATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 72 bp AAGTGCAGGGCAGTCCACTGGTCTTCATCCTTGGCATaGACACTGGTCTTCCGGGCTAGCAGTAGCTCCACA +
Preference number: 6 (lower is better)
Translates to: KCRAVHWSSSLA*TLVFRASSSST
Trigger: TGTGGAGCTACTGCTAGCCCGGAAGACCAGTGTCAATGCCAAGGATGAAGACCAGTGGACTGCCCTGCACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 90 bp TCCACAGCCATATGCAGTGGTGTAGAGCCCTTCCTGTTGGTCAGGTaGGGGTTGGCATTGTTAAGCAGCAGCCACTTGACACACTCCTCC +
Preference number: 6 (lower is better)
Translates to: STAICSGVEPFLLVR*GLALLSSSHLTHSS
Trigger: GGAGGAGTGTGTCAAGTGGCTGCTGCTTAACAATGCCAACCCCAACCTGACCAACAGGAAGGGCTCTACACCACTGCATATGGCTGTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 90 bp CCATTCTGGGCTGCAAAGTGCAGGGCAGTCCACTGGTCTTCATCCTaGGCATTGACACTGGTCTTCCGGGCTAGCAGTAGCTCCACAATT +
Preference number: 6 (lower is better)
Translates to: PFWAAKCRAVHWSSS*ALTLVFRASSSSTI
Trigger: AATTGTGGAGCTACTGCTAGCCCGGAAGACCAGTGTCAATGCCAAGGATGAAGACCAGTGGACTGCCCTGCACTTTGCAGCCCAGAATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 72 bp TCCCCTGATATGATGGCATCCACTAGCTTCTTCTTCTaGATGTCTGTGGGGCCCAGGTCGCCTGTTGAAGCT +
Preference number: 6 (lower is better)
Translates to: SPDMMASTSFFF*MSVGPRSPVEA
Trigger: AGCTTCAACAGGCGACCTGGGCCCCACAGACATCCAGAAGAAGAAGCTAGTGGATGCCATCATATCAGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 72 bp GTAGAGCCCTTCCTGTTGGTCAGGTTGGGGTTGGCATaGTTAAGCAGCAGCCACTTGACACACTCCTCCTGT +
Preference number: 6 (lower is better)
Translates to: VEPFLLVRLGLA*LSSSHLTHSSC
Trigger: ACAGGAGGAGTGTGTCAAGTGGCTGCTGCTTAACAATGCCAACCCCAACCTGACCAACAGGAAGGGCTCTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS TCA 72 bp GGAGGTAAGCGATTGTACCAAACAGGCCATCCATGCTaGGGTCATGAGAGTGGGACATGCCATTGCACTTGG +
Preference number: 6 (lower is better)
Translates to: GGKRLYQTGHPC*GHESGTCHCTW
Trigger: CCAAGTGCAATGGCATGTCCCACTCTCATGACCTCAGCATGGATGGCCTGTTTGGTACAATCGCTTACCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 72 bp CTGGCAGTACTAGTGTGTCCAGTCTCTGCAGCAACATaGAGAGGTGTCTGTGCCTGTAGGCTGCAGATGTTA +
Preference number: 6 (lower is better)
Translates to: LAVLVCPVSAAT*RGVCACRLQML
Trigger: TAACATCTGCAGCCTACAGGCACAGACACCTCTGCATGTTGCTGCAGAGACTGGACACACTAGTACTGCCAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS GCA 72 bp GCAGCAGAGCTCTGGCCTCCTTGGAACTTGAGACTCTaGAAGTTGATGTGTGCTCCATGTTTGAGCAGTGTC +
Preference number: 6 (lower is better)
Translates to: AAELWPPWNLRL*KLMCAPCLSSV
Trigger: GACACTGCTCAAACATGGAGCACACATCAACTTGCAGAGTCTCAAGTTCCAAGGAGGCCAGAGCTCTGCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 72 bp GGTGTCAAACAAGCGGCTCTTCTCACGAATTCGCTCTaGAGGGAGGTAAGCGATTGTACCAAACAGGCCATC +
Preference number: 6 (lower is better)
Translates to: GVKQAALLTNSL*REVSDCTKQAI
Trigger: GATGGCCTGTTTGGTACAATCGCTTACCTCCCTCCAGAGCGAATTCGTGAGAAGAGCCGCTTGTTTGACACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 72 bp GTCTCCATGTACTCCATGACCAAGCCGACAGGTTCCTaGCATATGCCGTACACAGGTAGAATGTATCGGAAC +
Preference number: 6 (lower is better)
Translates to: VSMYSMTKPTGS*HMPYTGRMYRN
Trigger: GTTCCGATACATTCTACCTGTGTACGGCATATGCCAGGAACCTGTCGGCTTGGTCATGGAGTACATGGAGAC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 72 bp TTCTCACAAAGGTCTTCTGTTTCAGAGGTAATTTCTTaGAAGGTGGGCCGCACCTGTGGGTCTGCATGCCAG +
Preference number: 6 (lower is better)
Translates to: FSQRSSVSEVIS*KVGRTCGSACQ
Trigger: CTGGCATGCAGACCCACAGGTGCGGCCCACCTTCCAAGAAATTACCTCTGAAACAGAAGACCTTTGTGAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 72 bp ATATGCAGTGGTGTAGAGCCCTTCCTGTTGGTCAGGTaGGGGTTGGCATTGTTAAGCAGCAGCCACTTGACA +
Preference number: 6 (lower is better)
Translates to: ICSGVEPFLLVR*GLALLSSSHLT
Trigger: TGTCAAGTGGCTGCTGCTTAACAATGCCAACCCCAACCTGACCAACAGGAAGGGCTCTACACCACTGCATAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 90 bp ACAGGTTCCTGGCATATGCCGTACACAGGTAGAATGTATCGGAACTaGGCCATCTCCATCTTCTTAGCTTCCTCCAGGAGCTCCATTCGT +
Preference number: 6 (lower is better)
Translates to: TGSWHMPYTGRMYRN*AISIFLASSRSSIR
Trigger: ACGAATGGAGCTCCTGGAGGAAGCTAAGAAGATGGAGATGGCCAAGTTCCGATACATTCTACCTGTGTACGGCATATGCCAGGAACCTGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 90 bp GTAAGCACACCCCAGATCACAATGGCGAAGCTGTATACATCATGTTaGGTGTCAAACAAGCGGCTCTTCTCACGAATTCGCTCTGGAGGG +
Preference number: 6 (lower is better)
Translates to: VSTPQITMAKLYTSC*VSNKRLFSRIRSGG
Trigger: CCCTCCAGAGCGAATTCGTGAGAAGAGCCGCTTGTTTGACACCAAACATGATGTATACAGCTTCGCCATTGTGATCTGGGGTGTGCTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS TCA 72 bp GTAGGATCTTCATCAGCCTGCTGGTGTCCCCTGATATaGTGGCATCCACTAGCTTCTTCTTCTGGATGTCTG +
Preference number: 6 (lower is better)
Translates to: VGSSSACWCPLI*WHPLASSSGCL
Trigger: CAGACATCCAGAAGAAGAAGCTAGTGGATGCCATCATATCAGGGGACACCAGCAGGCTGATGAAGATCCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 72 bp TGGCATATGCCGTACACAGGTAGAATGTATCGGAACTaGGCCATCTCCATCTTCTTAGCTTCCTCCAGGAGC +
Preference number: 6 (lower is better)
Translates to: WHMPYTGRMYRN*AISIFLASSRS
Trigger: GCTCCTGGAGGAAGCTAAGAAGATGGAGATGGCCAAGTTCCGATACATTCTACCTGTGTACGGCATATGCCA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 72 bp AACTTGAGACTCTGCAAGTTGATGTGTGCTCCATGTTaGAGCAGTGTCTCCACAGTCTGTGAATGCCTGCCC +
Preference number: 6 (lower is better)
Translates to: NLRLCKLMCAPC*SSVSTVCECLP
Trigger: GGGCAGGCATTCACAGACTGTGGAGACACTGCTCAAACATGGAGCACACATCAACTTGCAGAGTCTCAAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CAA 72 bp CCCCAGATCACAATGGCGAAGCTGTATACATCATGTTaGGTGTCAAACAAGCGGCTCTTCTCACGAATTCGC +
Preference number: 6 (lower is better)
Translates to: PQITMAKLYTSC*VSNKRLFSRIR
Trigger: GCGAATTCGTGAGAAGAGCCGCTTGTTTGACACCAAACATGATGTATACAGCTTCGCCATTGTGATCTGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10
CDS CCA 72 bp CCCAGATCACAATGGCGAAGCTGTATACATCATGTTTaGTGTCAAACAAGCGGCTCTTCTCACGAATTCGCT +
Preference number: 6 (lower is better)
Translates to: PRSQWRSCIHHV*CQTSGSSHEFA
Trigger: AGCGAATTCGTGAGAAGAGCCGCTTGTTTGACACCAAACATGATGTATACAGCTTCGCCATTGTGATCTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019386.10