Pregenerated sensors for RIOX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046791Ensembl transcript IDs: ENSMUST00000053744.9
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AATGGCCCAGCCAATGCTACCCGGTACACTGGACACTGTAGGGAATaGAGCTGGTGCTCTGAAAGGACAGGGGTCAGGGCCACTTCTGCC | + |
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Preference number: 1 (lower is better) Translates to: NGPANATRYTGHCRE*SWCSERTGVRATSA Trigger: GGCAGAAGTGGCCCTGACCCCTGTCCTTTCAGAGCACCAGCTTCATTCCCTACAGTGTCCAGTGTACCGGGTAGCATTGGCTGGGCCATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| 3UTR TCA 72 bp | GCCAATGCTACCCGGTACACTGGACACTGTAGGGAATaGAGCTGGTGCTCTGAAAGGACAGGGGTCAGGGCC | + |
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Preference number: 3 (lower is better) Translates to: ANATRYTGHCRE*SWCSERTGVRA Trigger: GGCCCTGACCCCTGTCCTTTCAGAGCACCAGCTTCATTCCCTACAGTGTCCAGTGTACCGGGTAGCATTGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR GCA 90 bp | GTAGGGAATGAAGCTGGTGCTCTGAAAGGACAGGGGTCAGGGCCACTTCTGCCAGGCCTCCAGCAGCTCTaGCGGCCTCTTCCGCTTGCC | + |
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Preference number: 4 (lower is better) Translates to: VGNEAGALKGQGSGPLLPGLQQL*RPLPLA Trigger: GGCAAGCGGAAGAGGCCGGCAGAGCTGCTGGAGGCC...TGGCAGAAGTGGCCCTGACCCCTGTCCTTTCAGAGCACCAGCTTCATTCCCTAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR TCA 90 bp | AAAGGACAGGGGTCAGGGCCACTTCTGCCACGAACTTTCCCCCTCAGCTTCAATGCTGGGCCCCCACATTaGCGGGTTCTCCAGCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: KGQGSGPLLPRTFPLSFNAGPPH*RVLQPP Trigger: GGGAGGCTGGAGAACCCGTCAATGTGGGGGCCCAGC...ATTGAAGCTGAGGGGGAAAGTTCGTGGCAGAAGTGGCCCTGACCCCTGTCCTTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR TCA 90 bp | ACCCAAGGAAGCAACTTCCATATAAAACCCCCAATGTCTCCAGCAGAATGGCCCGCGAGTCCGGGGGCGTaGGGTAGACGTTGGAGCCCG | + |
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Preference number: 4 (lower is better) Translates to: TQGSNFHIKPPMSPAEWPASPGA*GRRWSP Trigger: CGGGCTCCAACGTCTACCTCACGCCCCCGGACTCGC...GGGCCATTCTGCTGGAGACATTGGGGGTTTTATATGGAAGTTGCTTCCTTGGGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR TCA 90 bp | GAAAGGACAGGGGTCAGGGCCACTTCTGCCACGAACTTTCCCCCTCAGCTTCAACGAACTGGGAGCCCGTaGACACTTAGAGCCCGTTCC | + |
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Preference number: 4 (lower is better) Translates to: ERTGVRATSATNFPPQLQRTGSP*TLRARS Trigger: GGAACGGGCTCTAAGTGTTCACGGGCTCCCAGTTCG...TTGAAGCTGAGGGGGAAAGTTCGTGGCAGAAGTGGCCCTGACCCCTGTCCTTTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR GCA 90 bp | AATGTCTCCAGCAGAATGGCCCAGCCAATGCTACCCGGTACACTGGACACTGTAAGCTCCGTCAGTACCTaGTGCAGCGGCGAAGCCCGG | + |
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Preference number: 4 (lower is better) Translates to: NVSSRMAQPMLPGTLDTVSSVST*CSGEAR Trigger: CCGGGCTTCGCCGCTGCAGCAGGTACTGACGGAGCT...TACAGTGTCCAGTGTACCGGGTAGCATTGGCTGGGCCATTCTGCTGGAGACATT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR TCA 90 bp | GTAGGGAATGAAGCTGGTGCTCTGAAAGGACAGGGGTCAGGGCCACTTCTGCCACGAGCTACGCCGTCCTaGAGCATGTGGACTTGGGTT | + |
|
Preference number: 4 (lower is better) Translates to: VGNEAGALKGQGSGPLLPRATPS*SMWTWV Trigger: AACCCAAGTCCACATGCTTCAGGACGGCGTAGCTCG...TGGCAGAAGTGGCCCTGACCCCTGTCCTTTCAGAGCACCAGCTTCATTCCCTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR GCA 90 bp | AAAGGACAGGGGTCAGGGCCACTTCTGCCACGAACTTTCCCCCTCAGCTTCAATCTCGGGGCAAGCCTCTaGGGAACTCCACGTTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: KGQGSGPLLPRTFPLSFNLGASL*GTPRSP Trigger: AGGAGAACGTGGAGTTCCGCAGAGGCTTGCCCCGAG...ATTGAAGCTGAGGGGGAAAGTTCGTGGCAGAAGTGGCCCTGACCCCTGTCCTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CCA 90 bp | AGAATGGCCCAGCCAATGCTACCCGGTACACTGGACACTGTAGGGAATGAAGCTGAAACTGCCACACGGTaGGCGAGAAGGCTTGCGGGC | + |
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Preference number: 4 (lower is better) Translates to: RMAQPMLPGTLDTVGNEAETATR*ARRLAG Trigger: GCCCGCAAGCCTTCTCGCCCACCGTGTGGCAGTTTC...AGCTTCATTCCCTACAGTGTCCAGTGTACCGGGTAGCATTGGCTGGGCCATTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CCA 90 bp | AACCCCCAATGTCTCCAGCAGAATGGCCCAGCCAATGCTACCCGGTACACTGGACTGCCAAACTGCTCCTaGAGCACGGCCAGAAACTGC | + |
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Preference number: 4 (lower is better) Translates to: NPQCLQQNGPANATRYTGLPNCS*STARNC Trigger: GCAGTTTCTGGCCGTGCTCCAGGAGCAGTTTGGCAG...TCCAGTGTACCGGGTAGCATTGGCTGGGCCATTCTGCTGGAGACATTGGGGGTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CCA 90 bp | GAAAGGACAGGGGTCAGGGCCACTTCTGCCACGAACTTTCCCCCTCAGCTTCAAGAAGCAAGAGTTCCATaGCGTCGGCTTGCTGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: ERTGVRATSATNFPPQLQEARVP*RRLAGG Trigger: ACCCCCAGCAAGCCGACGCCATGGAACTCTTGCTTC...TTGAAGCTGAGGGGGAAAGTTCGTGGCAGAAGTGGCCCTGACCCCTGTCCTTTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR TCA 90 bp | AAGGACAGGGGTCAGGGCCACTTCTGCCACGAACTTTCCCCCTCAGCTTCAATTCCCCCATGTAATCCATaGAGTCTCGGGGCAAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: KDRGQGHFCHELSPSASIPPCNP*SLGASL Trigger: GAGGCTTGCCCCGAGACTTCATGGATTACATGGGGG...AATTGAAGCTGAGGGGGAAAGTTCGTGGCAGAAGTGGCCCTGACCCCTGTCCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR GCA 90 bp | AGAATGGCCCAGCCAATGCTACCCGGTACACTGGACACTGTAGGGAATGAAGCTTCCGGCTGCTGGGGATaGCGTTCAGCTCCGTCAGTA | + |
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Preference number: 4 (lower is better) Translates to: RMAQPMLPGTLDTVGNEASGCWG*RSAPSV Trigger: TACTGACGGAGCTGAACGGCATCCCCAGCAGCCGGA...AGCTTCATTCCCTACAGTGTCCAGTGTACCGGGTAGCATTGGCTGGGCCATTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR GCA 90 bp | CCAAGGAAGCAACTTCCATATAAAACCCCCAATGTCTCCAGCAGAATGGCCCAGGACCCTCGTAGTAGCTaGGGTCCTGCCGCCGCACCA | + |
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Preference number: 4 (lower is better) Translates to: PRKQLPYKTPNVSSRMAQDPRSS*GPAAAP Trigger: TGGTGCGGCGGCAGGACCGCAGCTACTACGAGGGTC...CTGGGCCATTCTGCTGGAGACATTGGGGGTTTTATATGGAAGTTGCTTCCTTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CCA 90 bp | AAGGACAGGGGTCAGGGCCACTTCTGCCACGAACTTTCCCCCTCAGCTTCAATTAGTCCAGGTCGGCGGTaGAGAAGAGACCCTCGTAGT | + |
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Preference number: 4 (lower is better) Translates to: KDRGQGHFCHELSPSASISPGRR*RRDPRS Trigger: ACTACGAGGGTCTCTTCTCCACCGCCGACCTGGACT...AATTGAAGCTGAGGGGGAAAGTTCGTGGCAGAAGTGGCCCTGACCCCTGTCCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR TCA 90 bp | AGAATGGCCCAGCCAATGCTACCCGGTACACTGGACACTGTAGGGAATGAAGCTGGTAGGTGGACAAGGTaGGGTGTAGGGAGTGGACTC | + |
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Preference number: 4 (lower is better) Translates to: RMAQPMLPGTLDTVGNEAGRWTR*GVGSGL Trigger: GAGTCCACTCCCTACACCTCACCTTGTCCACCTACC...AGCTTCATTCCCTACAGTGTCCAGTGTACCGGGTAGCATTGGCTGGGCCATTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR TCA 90 bp | ACCCCCAATGTCTCCAGCAGAATGGCCCAGCCAATGCTACCCGGTACACTGGACGCAGGGAATCGTGAATaGAGTCTTTTGCTCTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: TPNVSSRMAQPMLPGTLDAGNRE*SLLLSG Trigger: ACCAGAGAGCAAAAGACTTCATTCACGATTCCCTGC...GTCCAGTGTACCGGGTAGCATTGGCTGGGCCATTCTGCTGGAGACATTGGGGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR TCA 90 bp | AAAGGACAGGGGTCAGGGCCACTTCTGCCACGAACTTTCCCCCTCAGCTTCAATGGGGGCAGGGAATCGTaGATGAAGTCTTTTGCTCTC | + |
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Preference number: 4 (lower is better) Translates to: KGQGSGPLLPRTFPLSFNGGRES*MKSFAL Trigger: GAGAGCAAAAGACTTCATTCACGATTCCCTGCCCCC...ATTGAAGCTGAGGGGGAAAGTTCGTGGCAGAAGTGGCCCTGACCCCTGTCCTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR GCA 90 bp | TCCAGCAGAATGGCCCAGCCAATGCTACCCGGTACACTGGACACTGTAGGGAATTTCCGACCTTCCAGCTaGAACACGAAAGCCTCGATG | + |
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Preference number: 4 (lower is better) Translates to: SSRMAQPMLPGTLDTVGNFRPSS*NTKASM Trigger: CATCGAGGCTTTCGTGTTGCAGCTGGAAGGTCGGAA...ATTCCCTACAGTGTCCAGTGTACCGGGTAGCATTGGCTGGGCCATTCTGCTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CCA 90 bp | AACCCCCAATGTCTCCAGCAGAATGGCCCAGCCAATGCTACCCGGTACACTGGATCACCAAGGTCCTCCTaGCTGAAGTTGGGACTAGAT | + |
|
Preference number: 4 (lower is better) Translates to: NPQCLQQNGPANATRYTGSPRSS*LKLGLD Trigger: ATCTAGTCCCAACTTCAGCCAGGAGGACCTTGGTGA...TCCAGTGTACCGGGTAGCATTGGCTGGGCCATTCTGCTGGAGACATTGGGGGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CCA 90 bp | ACCCCCAATGTCTCCAGCAGAATGGCCCAGCCAATGCTACCCGGTACACTGGACAAGTCTTTTGCTCTCTaGTCAGCCACAGCATCGACA | + |
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Preference number: 4 (lower is better) Translates to: TPNVSSRMAQPMLPGTLDKSFAL*SATAST Trigger: TGTCGATGCTGTGGCTGACCAGAGAGCAAAAGACTT...GTCCAGTGTACCGGGTAGCATTGGCTGGGCCATTCTGCTGGAGACATTGGGGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CCA 90 bp | AATGTCTCCAGCAGAATGGCCCAGCCAATGCTACCCGGTACACTGGACACTGTAGTTTCAGTTGTCAGCTaGGCCCCCACATTGACGGGT | + |
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Preference number: 4 (lower is better) Translates to: NVSSRMAQPMLPGTLDTVVSVVS*APTLTG Trigger: ACCCGTCAATGTGGGGGCCCAGCTGACAACTGAAAC...TACAGTGTCCAGTGTACCGGGTAGCATTGGCTGGGCCATTCTGCTGGAGACATT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CCA 90 bp | AAAGGACAGGGGTCAGGGCCACTTCTGCCACGAACTTTCCCCCTCAGCTTCAATTCGGCTTGCTGGGGGTaGATTTCTAAGCACTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: KGQGSGPLLPRTFPLSFNSACWG*ISKHLG Trigger: ACCCAAGTGCTTAGAAATCCACCCCCAGCAAGCCGA...ATTGAAGCTGAGGGGGAAAGTTCGTGGCAGAAGTGGCCCTGACCCCTGTCCTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR TCA 90 bp | AAAGGACAGGGGTCAGGGCCACTTCTGCCACGAACTTTCCCCCTCAGCTTCAATGAGTTTTCCACCGTGTaGTACAGGAACAATCGGCCT | + |
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Preference number: 4 (lower is better) Translates to: KGQGSGPLLPRTFPLSFNEFSTV*YRNNRP Trigger: AGGCCGATTGTTCCTGTATCACACGGTGGAAAACTC...ATTGAAGCTGAGGGGGAAAGTTCGTGGCAGAAGTGGCCCTGACCCCTGTCCTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CCA 90 bp | ACCCAAGGAAGCAACTTCCATATAAAACCCCCAATGTCTCCAGCAGAATGGCCCCCACGTTCTCCTCTATaGCCGCTTGCACTGCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: TQGSNFHIKPPMSPAEWPPRSPL*PLALPE Trigger: CTCTGGCAGTGCAAGCGGCCATAGAGGAGAACGTGG...GGGCCATTCTGCTGGAGACATTGGGGGTTTTATATGGAAGTTGCTTCCTTGGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CCA 90 bp | AATGTCTCCAGCAGAATGGCCCAGCCAATGCTACCCGGTACACTGGACACTGTATTCCACACTGTCACATaGCAAGTCCCCCACTCTCAC | + |
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Preference number: 4 (lower is better) Translates to: NVSSRMAQPMLPGTLDTVFHTVT*QVPHSH Trigger: GTGAGAGTGGGGGACTTGCCATGTGACAGTGTGGAA...TACAGTGTCCAGTGTACCGGGTAGCATTGGCTGGGCCATTCTGCTGGAGACATT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CCA 90 bp | AAGGACAGGGGTCAGGGCCACTTCTGCCACGAACTTTCCCCCTCAGCTTCAATTGTTGCCAAGGAGAGCTaGTCTTCCACACTGTCACAT | + |
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Preference number: 4 (lower is better) Translates to: KDRGQGHFCHELSPSASIVAKES*SSTLSH Trigger: ATGTGACAGTGTGGAAGACCAGCTCTCCTTGGCAAC...AATTGAAGCTGAGGGGGAAAGTTCGTGGCAGAAGTGGCCCTGACCCCTGTCCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR TCA 90 bp | AACCCCCAATGTCTCCAGCAGAATGGCCCAGCCAATGCTACCCGGTACACTGGAATTCAGCTTGGTGAATaGAGCCCCGAGGAAAATAGA | + |
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Preference number: 4 (lower is better) Translates to: NPQCLQQNGPANATRYTGIQLGE*SPEENR Trigger: TCTATTTTCCTCGGGGCTTCATTCACCAAGCTGAAT...TCCAGTGTACCGGGTAGCATTGGCTGGGCCATTCTGCTGGAGACATTGGGGGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CCA 90 bp | AACCCCCAATGTCTCCAGCAGAATGGCCCAGCCAATGCTACCCGGTACACTGGACCTTATCATATAACATaGTTGCCAAGGAGAGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: NPQCLQQNGPANATRYTGPYHIT*LPRRAG Trigger: ACCAGCTCTCCTTGGCAACCATGTTATATGATAAGG...TCCAGTGTACCGGGTAGCATTGGCTGGGCCATTCTGCTGGAGACATTGGGGGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR GCA 90 bp | ACCCAAGGAAGCAACTTCCATATAAAACCCCCAATGTCTCCAGCAGAATGGCCCGTGAATGAAGTCTTTTaGTCTCTGGTCAGCCACAGC | + |
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Preference number: 4 (lower is better) Translates to: TQGSNFHIKPPMSPAEWPVNEVF*SLVSHS Trigger: GCTGTGGCTGACCAGAGAGCAAAAGACTTCATTCAC...GGGCCATTCTGCTGGAGACATTGGGGGTTTTATATGGAAGTTGCTTCCTTGGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CCA 90 bp | AAGGACAGGGGTCAGGGCCACTTCTGCCACGAACTTTCCCCCTCAGCTTCAATTGGATTTCTAAGCACTTaGGTTCCTCTAGGTGATAAA | + |
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Preference number: 4 (lower is better) Translates to: KDRGQGHFCHELSPSASIGFLST*VPLGDK Trigger: TTTATCACCTAGAGGAACCCAAGTGCTTAGAAATCC...AATTGAAGCTGAGGGGGAAAGTTCGTGGCAGAAGTGGCCCTGACCCCTGTCCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS GCA 90 bp | GGGGCGCCAGGAGCCACTCGAAGAGGCGGGCGGCGCGCCTCCGGCTaGTGGGGATGCCGTTCAGCTCCGTCAGTACCTGCTGCAGCGGCG | + |
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Preference number: 5 (lower is better) Translates to: GAPGATRRGGRRASG*WGCRSAPSVPAAAA Trigger: CGCCGCTGCAGCAGGTACTGACGGAGCTGAACGGCATCCCCAGCAGCCGGAGGCGCGCCGCCCGCCTCTTCGAGTGGCTCCTGGCGCCCC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS GCA 90 bp | GGAGCCACTCGAAGAGGCGGGCGGCGCGCCTCCGGCTGCTGGGGATaGCGTTCAGCTCCGTCAGTACCTGCTGCAGCGGCGAAGCCCGGG | + |
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Preference number: 5 (lower is better) Translates to: GATRRGGRRASGCWG*RSAPSVPAAAAKPG Trigger: CCCGGGCTTCGCCGCTGCAGCAGGTACTGACGGAGCTGAACGGCATCCCCAGCAGCCGGAGGCGCGCCGCCCGCCTCTTCGAGTGGCTCC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS GCA 90 bp | CGAGCTCTCAGCGCGGCCACGCGGGACGCCGCCGCACTTTTCCGGTaGCTTCGGATCTTCCGGGGCCGCAAGGGCAGGGCCAAGACCGAC | + |
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Preference number: 5 (lower is better) Translates to: RALSAATRDAAALFR*LRIFRGRKGRAKTD Trigger: GTCGGTCTTGGCCCTGCCCTTGCGGCCCCGGAAGATCCGAAGGCACCGGAAAAGTGCGGCGGCGTCCCGCGTGGCCGCGCTGAGAGCTCG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS GCA 90 bp | CCGCCGACCGCGAGGCCTCCAGCAGCTCTGCCGGCCTCTTCCGCTTaGCCCGAACCGAGGCCACCGCCACTTTCGAGTCCGAGTCCTCGC | + |
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Preference number: 5 (lower is better) Translates to: PPTARPPAALPASSA*PEPRPPPLSSPSPR Trigger: GCGAGGACTCGGACTCGAAAGTGGCGGTGGCCTCGGTTCGGGGCAAGCGGAAGAGGCCGGCAGAGCTGCTGGAGGCCTCGCGGTCGGCGG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CCA 90 bp | GCGCCAGGAGCCACTCGAAGAGGCGGGCGGCGCGCCTCCGGCTGCTaGGGATGCCGTTCAGCTCCGTCAGTACCTGCTGCAGCGGCGAAG | + |
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Preference number: 5 (lower is better) Translates to: APGATRRGGRRASGC*GCRSAPSVPAAAAK Trigger: CTTCGCCGCTGCAGCAGGTACTGACGGAGCTGAACGGCATCCCCAGCAGCCGGAGGCGCGCCGCCCGCCTCTTCGAGTGGCTCCTGGCGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS GCA 90 bp | GCATCGAGTCCAGGTCGGCGGTGGAGAAGAGACCCTCGTAGTAGCTaGGGTCCTGCCGCCGCACCAGCACCGCCTCCCGCTCCCACAGCC | + |
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Preference number: 5 (lower is better) Translates to: ASSPGRRWRRDPRSS*GPAAAPAPPPAPTA Trigger: GGCTGTGGGAGCGGGAGGCGGTGCTGGTGCGGCGGCAGGACCGCAGCTACTACGAGGGTCTCTTCTCCACCGCCGACCTGGACTCGATGC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS GCA 90 bp | TCCTGGAGCACGGCCAGAAACTGCCACACGGTGGGCGAGAAGGCTTaGGGGCACAGGAGGCGCAAGGAGCAGCCGGCTCGGTACAAGGAC | + |
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Preference number: 5 (lower is better) Translates to: SWSTARNCHTVGEKA*GHRRRKEQPARYKD Trigger: GTCCTTGTACCGAGCCGGCTGCTCCTTGCGCCTCCTGTGCCCGCAAGCCTTCTCGCCCACCGTGTGGCAGTTTCTGGCCGTGCTCCAGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS GCA 90 bp | GAGCCCGCCATGCTGCCAAACTGCTCCTGGAGCACGGCCAGAAACTaGCACACGGTGGGCGAGAAGGCTTGCGGGCACAGGAGGCGCAAG | + |
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Preference number: 5 (lower is better) Translates to: EPAMLPNCSWSTARN*HTVGEKACGHRRRK Trigger: CTTGCGCCTCCTGTGCCCGCAAGCCTTCTCGCCCACCGTGTGGCAGTTTCTGGCCGTGCTCCAGGAGCAGTTTGGCAGCATGGCGGGCTC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CCA 90 bp | TGCTGCCAAACTGCTCCTGGAGCACGGCCAGAAACTGCCACACGGTaGGCGAGAAGGCTTGCGGGCACAGGAGGCGCAAGGAGCAGCCGG | + |
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Preference number: 5 (lower is better) Translates to: CCQTAPGARPETATR*ARRLAGTGGARSSR Trigger: CCGGCTGCTCCTTGCGCCTCCTGTGCCCGCAAGCCTTCTCGCCCACCGTGTGGCAGTTTCTGGCCGTGCTCCAGGAGCAGTTTGGCAGCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CCA 90 bp | CGAATTGCACGTCCTCGTAGCGCAGCATCGAGTCCAGGTCGGCGGTaGAGAAGAGACCCTCGTAGTAGCTGCGGTCCTGCCGCCGCACCA | + |
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Preference number: 5 (lower is better) Translates to: RIARPRSAASSPGRR*RRDPRSSCGPAAAP Trigger: TGGTGCGGCGGCAGGACCGCAGCTACTACGAGGGTCTCTTCTCCACCGCCGACCTGGACTCGATGCTGCGCTACGAGGACGTGCAATTCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS TCA 90 bp | CGATGTCATCGTAGTGAGGAGCAAAGCCCTGCGAGTCCGGGGGCGTaGGGTAGACGTTGGAGCCCGCCATGCTGCCAAACTGCTCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: RCHRSEEQSPASPGA*GRRWSPPCCQTAPG Trigger: TCCAGGAGCAGTTTGGCAGCATGGCGGGCTCCAACGTCTACCTCACGCCCCCGGACTCGCAGGGCTTTGCTCCTCACTACGATGACATCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS TCA 90 bp | CCCACATTGACGGGTTCTCCAGCCTCCCAGCGAACTGGGAGCCCGTaGACACTTAGAGCCCGTTCCCTATCGGTCAACACAGGGGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: PTLTGSPASQRTGSP*TLRARSLSVNTGGR Trigger: CCTGCCCCCTGTGTTGACCGATAGGGAACGGGCTCTAAGTGTTCACGGGCTCCCAGTTCGCTGGGAGGCTGGAGAACCCGTCAATGTGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS TCA 90 bp | AGGAACAATCGGCCTCCCTCTCCCACCAGCCGAGCTACGCCGTCCTaGAGCATGTGGACTTGGGTTTCAGTTGTCAGCTGGGCCCCCACA | + |
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Preference number: 5 (lower is better) Translates to: RNNRPPSPTSRATPS*SMWTWVSVVSWAPT Trigger: TGTGGGGGCCCAGCTGACAACTGAAACCCAAGTCCACATGCTTCAGGACGGCGTAGCTCGGCTGGTGGGAGAGGGAGGCCGATTGTTCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS GCA 90 bp | CGGGGCAAGCCTCTGCGGAACTCCACGTTCTCCTCTATGGCCGCTTaGACTGCCAGAGGCAGTACAGCCTCCAGGAAGTCACCCCATGTA | + |
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Preference number: 5 (lower is better) Translates to: RGKPLRNSTFSSMAA*TARGSTASRKSPHV Trigger: TACATGGGGTGACTTCCTGGAGGCTGTACTGCCTCTGGCAGTGCAAGCGGCCATAGAGGAGAACGTGGAGTTCCGCAGAGGCTTGCCCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CAA 90 bp | TCCAGCAGAATGGCCCAGCCAATGCTACCCGGTACACTGGACACTGTAGGGAATGGTGGGCGAGAAGGCTaGCGGGCACAGGAGGCGCAA | + |
|
Preference number: 5 (lower is better) Translates to: SSRMAQPMLPGTLDTVGNGGREG*RAQEAQ Trigger: TTGCGCCTCCTGTGCCCGCAAGCCTTCTCGCCCACC...ATTCCCTACAGTGTCCAGTGTACCGGGTAGCATTGGCTGGGCCATTCTGCTGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CAA 90 bp | GTAGGGAATGAAGCTGGTGCTCTGAAAGGACAGGGGTCAGGGCCACTTCTGCCAAGCTGGGCCCCCACATaGACGGGTTCTCCAGCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: VGNEAGALKGQGSGPLLPSWAPT*TGSPAS Trigger: GGAGGCTGGAGAACCCGTCAATGTGGGGGCCCAGCT...TGGCAGAAGTGGCCCTGACCCCTGTCCTTTCAGAGCACCAGCTTCATTCCCTAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS TCA 90 bp | GAAGCATGTGGACTTGGGTTTCAGTTGTCAGCTGGGCCCCCACATTaGCGGGTTCTCCAGCCTCCCAGCGAACTGGGAGCCCGTGAACAC | + |
|
Preference number: 5 (lower is better) Translates to: EACGLGFQLSAGPPH*RVLQPPSELGAREH Trigger: GTGTTCACGGGCTCCCAGTTCGCTGGGAGGCTGGAGAACCCGTCAATGTGGGGGCCCAGCTGACAACTGAAACCCAAGTCCACATGCTTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS GCA 90 bp | CAAGCCTCTGCGGAACTCCACGTTCTCCTCTATGGCCGCTTGCACTaGCAGAGGCAGTACAGCCTCCAGGAAGTCACCCCATGTATTGCG | + |
|
Preference number: 5 (lower is better) Translates to: QASAELHVLLYGRLH*QRQYSLQEVTPCIA Trigger: CGCAATACATGGGGTGACTTCCTGGAGGCTGTACTGCCTCTGGCAGTGCAAGCGGCCATAGAGGAGAACGTGGAGTTCCGCAGAGGCTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CCA 90 bp | CCAGGTTCCAGTACCGTTTGCAGCACAGGCTCACCAAGGTCCTCCTaGCTGAAGTTGGGACTAGATGTCAGGGCCAACTCCTCACTCGGG | + |
|
Preference number: 5 (lower is better) Translates to: PGSSTVCSTGSPRSS*LKLGLDVRANSSLG Trigger: CCCGAGTGAGGAGTTGGCCCTGACATCTAGTCCCAACTTCAGCCAGGAGGACCTTGGTGAGCCTGTGCTGCAAACGGTACTGGAACCTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CCA 90 bp | CCCCCACTCTCACAAACTCCGGGTAGGAGCGAAGCAAGAGTTCCATaGCGTCGGCTTGCTGGGGGTGGATTTCTAAGCACTTGGGTTCCT | + |
|
Preference number: 5 (lower is better) Translates to: PPLSQTPGRSEARVP*RRLAGGGFLSTWVP Trigger: AGGAACCCAAGTGCTTAGAAATCCACCCCCAGCAAGCCGACGCCATGGAACTCTTGCTTCGCTCCTACCCGGAGTTTGTGAGAGTGGGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CAA 90 bp | CAATGTCTCCAGCAGAATGGCCCAGCCAATGCTACCCGGTACACTGGACACTGTCTCCTCTATGGCCGCTaGCACTGCCAGAGGCAGTAC | + |
|
Preference number: 5 (lower is better) Translates to: QCLQQNGPANATRYTGHCLLYGR*HCQRQY Trigger: GTACTGCCTCTGGCAGTGCAAGCGGCCATAGAGGAG...ACAGTGTCCAGTGTACCGGGTAGCATTGGCTGGGCCATTCTGCTGGAGACATTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CAA 90 bp | CTGAAAGGACAGGGGTCAGGGCCACTTCTGCCACGAACTTTCCCCCTCAGCTTCATCCTGACATTCAGCTaGGTGAATGAAGCCCCGAGG | + |
|
Preference number: 5 (lower is better) Translates to: LKGQGSGPLLPRTFPLSFILTFS*VNEAPR Trigger: CCTCGGGGCTTCATTCACCAAGCTGAATGTCAGGAT...GAAGCTGAGGGGGAAAGTTCGTGGCAGAAGTGGCCCTGACCCCTGTCCTTTCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CAA 90 bp | CTGAAAGGACAGGGGTCAGGGCCACTTCTGCCACGAACTTTCCCCCTCAGCTTCGGAACTAGAGGTGTCTaGGTGAGTAGCAGCCCCTTA | + |
|
Preference number: 5 (lower is better) Translates to: LKGQGSGPLLPRTFPLSFGTRGV*VSSSPL Trigger: TAAGGGGCTGCTACTCACCAAGACACCTCTAGTTCC...GAAGCTGAGGGGGAAAGTTCGTGGCAGAAGTGGCCCTGACCCCTGTCCTTTCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS TCA 90 bp | GAGCCCGTTCCCTATCGGTCAACACAGGGGGCAGGGAATCGTGAATaGAGTCTTTTGCTCTCTGGTCAGCCACAGCATCGACAGGAGCAA | + |
|
Preference number: 5 (lower is better) Translates to: EPVPYRSTQGAGNRE*SLLLSGQPQHRQEQ Trigger: TTGCTCCTGTCGATGCTGTGGCTGACCAGAGAGCAAAAGACTTCATTCACGATTCCCTGCCCCCTGTGTTGACCGATAGGGAACGGGCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS TCA 90 bp | CCTCCAGGAAGTCACCCCATGTATTGCGCTGGTAGGTGGACAAGGTaGGGTGTAGGGAGTGGACTCCATCCTGACATTCAGCTTGGTGAA | + |
|
Preference number: 5 (lower is better) Translates to: PPGSHPMYCAGRWTR*GVGSGLHPDIQLGE Trigger: TTCACCAAGCTGAATGTCAGGATGGAGTCCACTCCCTACACCTCACCTTGTCCACCTACCAGCGCAATACATGGGGTGACTTCCTGGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS TCA 90 bp | CTTAGAGCCCGTTCCCTATCGGTCAACACAGGGGGCAGGGAATCGTaGATGAAGTCTTTTGCTCTCTGGTCAGCCACAGCATCGACAGGA | + |
|
Preference number: 5 (lower is better) Translates to: LRARSLSVNTGGRES*MKSFALWSATASTG Trigger: TCCTGTCGATGCTGTGGCTGACCAGAGAGCAAAAGACTTCATTCACGATTCCCTGCCCCCTGTGTTGACCGATAGGGAACGGGCTCTAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CAA 90 bp | CCAAGGAAGCAACTTCCATATAAAACCCCCAATGTCTCCAGCAGAATGGCCCAGGGACTTGGGTTTCAGTaGTCAGCTGGGCCCCCACAT | + |
|
Preference number: 5 (lower is better) Translates to: PRKQLPYKTPNVSSRMAQGLGFQ*SAGPPH Trigger: ATGTGGGGGCCCAGCTGACAACTGAAACCCAAGTCC...CTGGGCCATTCTGCTGGAGACATTGGGGGTTTTATATGGAAGTTGCTTCCTTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CCA 90 bp | AGAGTTCCATGGCGTCGGCTTGCTGGGGGTGGATTTCTAAGCACTTaGGTTCCTCTAGGTGATAAACTCGAGAGTTTTCCACCGTGTGAT | + |
|
Preference number: 5 (lower is better) Translates to: RVPWRRLAGGGFLST*VPLGDKLESFPPCD Trigger: ATCACACGGTGGAAAACTCTCGAGTTTATCACCTAGAGGAACCCAAGTGCTTAGAAATCCACCCCCAGCAAGCCGACGCCATGGAACTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CCA 90 bp | GTGAGTAGCAGCCCCTTATCATATAACATGGTTGCCAAGGAGAGCTaGTCTTCCACACTGTCACATGGCAAGTCCCCCACTCTCACAAAC | + |
|
Preference number: 5 (lower is better) Translates to: VSSSPLSYNMVAKES*SSTLSHGKSPTLTN Trigger: GTTTGTGAGAGTGGGGGACTTGCCATGTGACAGTGTGGAAGACCAGCTCTCCTTGGCAACCATGTTATATGATAAGGGGCTGCTACTCAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS-3UTR CAA 90 bp | AAAGGACAGGGGTCAGGGCCACTTCTGCCACGAACTTTCCCCCTCAGCTTCAATTATCATATAACATGGTaGCCAAGGAGAGCTGGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: KGQGSGPLLPRTFPLSFNYHITW*PRRAGL Trigger: AAGACCAGCTCTCCTTGGCAACCATGTTATATGATA...ATTGAAGCTGAGGGGGAAAGTTCGTGGCAGAAGTGGCCCTGACCCCTGTCCTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS GCA 72 bp | CCGCGGCTCCGCCGACCGCGAGGCCTCCAGCAGCTCTaGCGGCCTCTTCCGCTTGCCCCGAACCGAGGCCAC | + |
|
Preference number: 6 (lower is better) Translates to: PRLRRPRGLQQL*RPLPLAPNRGH Trigger: GTGGCCTCGGTTCGGGGCAAGCGGAAGAGGCCGGCAGAGCTGCTGGAGGCCTCGCGGTCGGCGGAGCCGCGG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS GCA 72 bp | AGCGCGGCCACGCGGGACGCCGCCGCACTTTTCCGGTaGCTTCGGATCTTCCGGGGCCGCAAGGGCAGGGCC | + |
|
Preference number: 6 (lower is better) Translates to: SAATRDAAALFR*LRIFRGRKGRA Trigger: GGCCCTGCCCTTGCGGCCCCGGAAGATCCGAAGGCACCGGAAAAGTGCGGCGGCGTCCCGCGTGGCCGCGCT 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CAA 90 bp | TCCGCCGACCGCGAGGCCTCCAGCAGCTCTGCCGGCCTCTTCCGCTaGCCCCGAACCGAGGCCACCGCCACTTTCGAGTCCGAGTCCTCG | + |
|
Preference number: 6 (lower is better) Translates to: SADREASSSSAGLFR*PRTEATATFESESS Trigger: CGAGGACTCGGACTCGAAAGTGGCGGTGGCCTCGGTTCGGGGCAAGCGGAAGAGGCCGGCAGAGCTGCTGGAGGCCTCGCGGTCGGCGGA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS GCA 72 bp | GGAGCCACTCGAAGAGGCGGGCGGCGCGCCTCCGGCTaGTGGGGATGCCGTTCAGCTCCGTCAGTACCTGCT | + |
|
Preference number: 6 (lower is better) Translates to: GATRRGGRRASG*WGCRSAPSVPA Trigger: AGCAGGTACTGACGGAGCTGAACGGCATCCCCAGCAGCCGGAGGCGCGCCGCCCGCCTCTTCGAGTGGCTCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CCA 72 bp | GCCACTCGAAGAGGCGGGCGGCGCGCCTCCGGCTGCTaGGGATGCCGTTCAGCTCCGTCAGTACCTGCTGCA | + |
|
Preference number: 6 (lower is better) Translates to: ATRRGGRRASGC*GCRSAPSVPAA Trigger: TGCAGCAGGTACTGACGGAGCTGAACGGCATCCCCAGCAGCCGGAGGCGCGCCGCCCGCCTCTTCGAGTGGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS GCA 72 bp | ACGGCCAGAAACTGCCACACGGTGGGCGAGAAGGCTTaGGGGCACAGGAGGCGCAAGGAGCAGCCGGCTCGG | + |
|
Preference number: 6 (lower is better) Translates to: TARNCHTVGEKA*GHRRRKEQPAR Trigger: CCGAGCCGGCTGCTCCTTGCGCCTCCTGTGCCCGCAAGCCTTCTCGCCCACCGTGTGGCAGTTTCTGGCCGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CAA 72 bp | CACGGCCAGAAACTGCCACACGGTGGGCGAGAAGGCTaGCGGGCACAGGAGGCGCAAGGAGCAGCCGGCTCG | + |
|
Preference number: 6 (lower is better) Translates to: HGQKLPHGGREG*RAQEAQGAAGS Trigger: CGAGCCGGCTGCTCCTTGCGCCTCCTGTGCCCGCAAGCCTTCTCGCCCACCGTGTGGCAGTTTCTGGCCGTG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CAA 90 bp | CCGCCGTCCATCGACGTAGCGCGCGGCGTCCAGATGCTGCCCGAATaGCACGTCCTCGTAGCGCAGCATCGAGTCCAGGTCGGCGGTGGA | + |
|
Preference number: 6 (lower is better) Translates to: PPSIDVARGVQMLPE*HVLVAQHRVQVGGG Trigger: TCCACCGCCGACCTGGACTCGATGCTGCGCTACGAGGACGTGCAATTCGGGCAGCATCTGGACGCCGCGCGCTACGTCGATGGACGGCGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CAA 90 bp | CTCCTGGAGCACGGCCAGAAACTGCCACACGGTGGGCGAGAAGGCTaGCGGGCACAGGAGGCGCAAGGAGCAGCCGGCTCGGTACAAGGA | + |
|
Preference number: 6 (lower is better) Translates to: LLEHGQKLPHGGREG*RAQEAQGAAGSVQG Trigger: TCCTTGTACCGAGCCGGCTGCTCCTTGCGCCTCCTGTGCCCGCAAGCCTTCTCGCCCACCGTGTGGCAGTTTCTGGCCGTGCTCCAGGAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CCA 72 bp | ACTGCTCCTGGAGCACGGCCAGAAACTGCCACACGGTaGGCGAGAAGGCTTGCGGGCACAGGAGGCGCAAGG | + |
|
Preference number: 6 (lower is better) Translates to: TAPGARPETATR*ARRLAGTGGAR Trigger: CCTTGCGCCTCCTGTGCCCGCAAGCCTTCTCGCCCACCGTGTGGCAGTTTCTGGCCGTGCTCCAGGAGCAGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CCA 72 bp | CGTCCTCGTAGCGCAGCATCGAGTCCAGGTCGGCGGTaGAGAAGAGACCCTCGTAGTAGCTGCGGTCCTGCC | + |
|
Preference number: 6 (lower is better) Translates to: RPRSAASSPGRR*RRDPRSSCGPA Trigger: GGCAGGACCGCAGCTACTACGAGGGTCTCTTCTCCACCGCCGACCTGGACTCGATGCTGCGCTACGAGGACG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS GCA 72 bp | ATGCTGCCAAACTGCTCCTGGAGCACGGCCAGAAACTaGCACACGGTGGGCGAGAAGGCTTGCGGGCACAGG | + |
|
Preference number: 6 (lower is better) Translates to: MLPNCSWSTARN*HTVGEKACGHR Trigger: CCTGTGCCCGCAAGCCTTCTCGCCCACCGTGTGGCAGTTTCTGGCCGTGCTCCAGGAGCAGTTTGGCAGCAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CAA 72 bp | ATCGACGTAGCGCGCGGCGTCCAGATGCTGCCCGAATaGCACGTCCTCGTAGCGCAGCATCGAGTCCAGGTC | + |
|
Preference number: 6 (lower is better) Translates to: IDVARGVQMLPE*HVLVAQHRVQV Trigger: GACCTGGACTCGATGCTGCGCTACGAGGACGTGCAATTCGGGCAGCATCTGGACGCCGCGCGCTACGTCGAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS TCA 72 bp | GGACTTGGGTTTCAGTTGTCAGCTGGGCCCCCACATTaGCGGGTTCTCCAGCCTCCCAGCGAACTGGGAGCC | + |
|
Preference number: 6 (lower is better) Translates to: GLGFQLSAGPPH*RVLQPPSELGA Trigger: GGCTCCCAGTTCGCTGGGAGGCTGGAGAACCCGTCAATGTGGGGGCCCAGCTGACAACTGAAACCCAAGTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS TCA 72 bp | CGGCCTCCCTCTCCCACCAGCCGAGCTACGCCGTCCTaGAGCATGTGGACTTGGGTTTCAGTTGTCAGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: RPPSPTSRATPS*SMWTWVSVVSW Trigger: CCAGCTGACAACTGAAACCCAAGTCCACATGCTTCAGGACGGCGTAGCTCGGCTGGTGGGAGAGGGAGGCCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CCA 72 bp | GGGGCAAGCCTCTGCGGAACTCCACGTTCTCCTCTATaGCCGCTTGCACTGCCAGAGGCAGTACAGCCTCCA | + |
|
Preference number: 6 (lower is better) Translates to: GASLCGTPRSPL*PLALPEAVQPP Trigger: TGGAGGCTGTACTGCCTCTGGCAGTGCAAGCGGCCATAGAGGAGAACGTGGAGTTCCGCAGAGGCTTGCCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CAA 90 bp | TCCCTCTCCCACCAGCCGAGCTACGCCGTCCTGAAGCATGTGGACTaGGGTTTCAGTTGTCAGCTGGGCCCCCACATTGACGGGTTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: SLSHQPSYAVLKHVD*GFSCQLGPHIDGFS Trigger: GGAGAACCCGTCAATGTGGGGGCCCAGCTGACAACTGAAACCCAAGTCCACATGCTTCAGGACGGCGTAGCTCGGCTGGTGGGAGAGGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS GCA 72 bp | GCGGAACTCCACGTTCTCCTCTATGGCCGCTTGCACTaGCAGAGGCAGTACAGCCTCCAGGAAGTCACCCCA | + |
|
Preference number: 6 (lower is better) Translates to: AELHVLLYGRLH*QRQYSLQEVTP Trigger: TGGGGTGACTTCCTGGAGGCTGTACTGCCTCTGGCAGTGCAAGCGGCCATAGAGGAGAACGTGGAGTTCCGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CAA 72 bp | TGGACTTGGGTTTCAGTTGTCAGCTGGGCCCCCACATaGACGGGTTCTCCAGCCTCCCAGCGAACTGGGAGC | + |
|
Preference number: 6 (lower is better) Translates to: WTWVSVVSWAPT*TGSPASQRTGS Trigger: GCTCCCAGTTCGCTGGGAGGCTGGAGAACCCGTCAATGTGGGGGCCCAGCTGACAACTGAAACCCAAGTCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CAA 72 bp | TGCAGCACAGGCTCACCAAGGTCCTCCTGGCTGAAGTaGGGACTAGATGTCAGGGCCAACTCCTCACTCGGG | + |
|
Preference number: 6 (lower is better) Translates to: CSTGSPRSSWLK*GLDVRANSSLG Trigger: CCCGAGTGAGGAGTTGGCCCTGACATCTAGTCCCAACTTCAGCCAGGAGGACCTTGGTGAGCCTGTGCTGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CAA 72 bp | CACCAGCCGAGCTACGCCGTCCTGAAGCATGTGGACTaGGGTTTCAGTTGTCAGCTGGGCCCCCACATTGAC | + |
|
Preference number: 6 (lower is better) Translates to: HQPSYAVLKHVD*GFSCQLGPHID Trigger: GTCAATGTGGGGGCCCAGCTGACAACTGAAACCCAAGTCCACATGCTTCAGGACGGCGTAGCTCGGCTGGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CCA 72 bp | AGTACCGTTTGCAGCACAGGCTCACCAAGGTCCTCCTaGCTGAAGTTGGGACTAGATGTCAGGGCCAACTCC | + |
|
Preference number: 6 (lower is better) Translates to: STVCSTGSPRSS*LKLGLDVRANS Trigger: GGAGTTGGCCCTGACATCTAGTCCCAACTTCAGCCAGGAGGACCTTGGTGAGCCTGTGCTGCAAACGGTACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CCA 72 bp | TCACAAACTCCGGGTAGGAGCGAAGCAAGAGTTCCATaGCGTCGGCTTGCTGGGGGTGGATTTCTAAGCACT | + |
|
Preference number: 6 (lower is better) Translates to: SQTPGRSEARVP*RRLAGGGFLST Trigger: AGTGCTTAGAAATCCACCCCCAGCAAGCCGACGCCATGGAACTCTTGCTTCGCTCCTACCCGGAGTTTGTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS TCA 72 bp | CCCTATCGGTCAACACAGGGGGCAGGGAATCGTGAATaGAGTCTTTTGCTCTCTGGTCAGCCACAGCATCGA | + |
|
Preference number: 6 (lower is better) Translates to: PYRSTQGAGNRE*SLLLSGQPQHR Trigger: TCGATGCTGTGGCTGACCAGAGAGCAAAAGACTTCATTCACGATTCCCTGCCCCCTGTGTTGACCGATAGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS TCA 72 bp | GGGAGTGGACTCCATCCTGACATTCAGCTTGGTGAATaGAGCCCCGAGGAAAATAGAGCAGGTCTCCAGGTT | + |
|
Preference number: 6 (lower is better) Translates to: GSGLHPDIQLGE*SPEENRAGLQV Trigger: AACCTGGAGACCTGCTCTATTTTCCTCGGGGCTTCATTCACCAAGCTGAATGTCAGGATGGAGTCCACTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS GCA 72 bp | CAACACAGGGGGCAGGGAATCGTGAATGAAGTCTTTTaGTCTCTGGTCAGCCACAGCATCGACAGGAGCAAA | + |
|
Preference number: 6 (lower is better) Translates to: QHRGQGIVNEVF*SLVSHSIDRSK Trigger: TTTGCTCCTGTCGATGCTGTGGCTGACCAGAGAGCAAAAGACTTCATTCACGATTCCCTGCCCCCTGTGTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CCA 72 bp | TGGCGTCGGCTTGCTGGGGGTGGATTTCTAAGCACTTaGGTTCCTCTAGGTGATAAACTCGAGAGTTTTCCA | + |
|
Preference number: 6 (lower is better) Translates to: WRRLAGGGFLST*VPLGDKLESFP Trigger: TGGAAAACTCTCGAGTTTATCACCTAGAGGAACCCAAGTGCTTAGAAATCCACCCCCAGCAAGCCGACGCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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| CDS CCA 72 bp | AGCCCCTTATCATATAACATGGTTGCCAAGGAGAGCTaGTCTTCCACACTGTCACATGGCAAGTCCCCCACT | + |
|
Preference number: 6 (lower is better) Translates to: SPLSYNMVAKES*SSTLSHGKSPT Trigger: AGTGGGGGACTTGCCATGTGACAGTGTGGAAGACCAGCTCTCCTTGGCAACCATGTTATATGATAAGGGGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053744.9 |
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