Pregenerated sensors for RIOK3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024404Ensembl transcript IDs: ENSMUST00000025270.8, ENSMUST00000234148.2, ENSMUST00000234415.2, ENSMUST00000234985.2
Found 116 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGAGGCGAGCGGAATGGAGCAGAGCGCAGCCATCGAGCCTCCCCTaGAAACACCTCAGTCCCCACCTCCCACATTTGGAAACACTGCCT | + |
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Preference number: 1 (lower is better) Translates to: RRRAEWSRAQPSSLP*KHLSPHLPHLETLP Trigger: AGGCAGTGTTTCCAAATGTGGGAGGTGGGGACTGAGGTGTTTGCAGGGGAGGCTCGATGGCTGCGCTCTGCTCCATTCCGCTCGCCTCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR CCA 90 bp | CAACATCCACCCAAAGACGCAAGGGAAAGCAGGAGGCGAGCGGAATaGAGCAGAGCGCAGCCATCGAGCCTCCCCTGCAAACACCTCAGT | + |
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Preference number: 1 (lower is better) Translates to: QHPPKDARESRRRAE*SRAQPSSLPCKHLS Trigger: ACTGAGGTGTTTGCAGGGGAGGCTCGATGGCTGCGCTCTGCTCCATTCCGCTCGCCTCCTGCTTTCCCTTGCGTCTTTGGGTGGATGTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR CCA 90 bp | CAGCTGCCGTCCGTCACCGCTGTACTAGTCGGCAGACAGCACAGGTaGGCTTCCATCATCTTTCAGAAACGAGGCTGCTTTCCTCCCGTT | + |
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Preference number: 1 (lower is better) Translates to: QLPSVTAVLVGRQHR*ASIIFQKRGCFPPV Trigger: AACGGGAGGAAAGCAGCCTCGTTTCTGAAAGATGATGGAAGCCCACCTGTGCTGTCTGCCGACTAGTACAGCGGTGACGGACGGCAGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234148.2 |
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| 3UTR TCA 90 bp | AATGCCGAGTTAAAAATTGCACACATCTGGCACGTGGGTCACAAGTaGGAAGCCCAGAAGCAGCACTGTCCACTCCTGCTTTGGTATGTC | + |
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Preference number: 1 (lower is better) Translates to: NAELKIAHIWHVGHK*EAQKQHCPLLLWYV Trigger: GACATACCAAAGCAGGAGTGGACAGTGCTGCTTCTGGGCTTCTCACTTGTGACCCACGTGCCAGATGTGTGCAATTTTTAACTCGGCATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR GCA 90 bp | CCAATAAAATGCTTATGTCCATTTCCACCATCCACTGAGGCCAAGTaGCCATTTCTAGTACCCACTGGGGTCTCCACGCTCACGGTCAAA | + |
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Preference number: 1 (lower is better) Translates to: PIKCLCPFPPSTEAK*PFLVPTGVSTLTVK Trigger: TTTGACCGTGAGCGTGGAGACCCCAGTGGGTACTAGAAATGGGCACTTGGCCTCAGTGGATGGTGGAAATGGACATAAGCATTTTATTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR CCA 90 bp | TTGAACAGCTCCCGTTCATTGAGGGCTTCCGTTACTCCTCCTTTCTaGAAGAACTGTGAAACATTCCTACAGTCACGGAATAAGAACTCC | + |
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Preference number: 1 (lower is better) Translates to: LNSSRSLRASVTPPF*KNCETFLQSRNKNS Trigger: GGAGTTCTTATTCCGTGACTGTAGGAATGTTTCACAGTTCTTCCAGAAAGGAGGAGTAACGGAAGCCCTCAATGAACGGGAGCTGTTCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000234148.2 ENSMUST00000234415.2 |
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| 3UTR GCA 90 bp | GGAATTGGACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTaGTGTCATCTCTCCAGCTCGGTAACATACATACATACATACATA | + |
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Preference number: 1 (lower is better) Translates to: GIGLRTSGRAVSALN*CHLSSSVTYIHTYI Trigger: TATGTATGTATGTATGTATGTTACCGAGCTGGAGAGATGACAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTCCAATTCC 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
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| 3UTR GCA 90 bp | ATGAGAGGTAGTGACATTTTATTCTTTCAATGCCGAGTTAAAAATTaGACACATCTGGCACGTGGGTCACAAGTGAGAAGCCCAGAAGCA | + |
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Preference number: 1 (lower is better) Translates to: MRGSDILFFQCRVKN*THLARGSQVRSPEA Trigger: TGCTTCTGGGCTTCTCACTTGTGACCCACGTGCCAGATGTGTGCAATTTTTAACTCGGCATTGAAAGAATAAAATGTCACTACCTCTCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR GCA 90 bp | ACAAACAAACAAACAAACAAACAAACAAAACAAACAAACCAAAACTaGACTGCTTACTTTGCTATAGAAAGGGTGTCTTGGTGCCAGGAC | + |
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Preference number: 1 (lower is better) Translates to: TNKQTNKQTKQTNQN*TAYFAIERVSWCQD Trigger: GTCCTGGCACCAAGACACCCTTTCTATAGCAAAGTAAGCAGTGCAGTTTTGGTTTGTTTGTTTTGTTTGTTTGTTTGTTTGTTTGTTTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
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| 3UTR-3UTR TCA 90 bp | CAGAGCGCAGCCATCGAGCCTCCCCTGCAAACACCTCAGTCCCCACCTCCCACACACGTGGGTCACAAGTaGGAAGCCCAGAAGCAGCAC | + |
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Preference number: 2 (lower is better) Translates to: QSAAIEPPLQTPQSPPPTHVGHK*EAQKQH Trigger: GTGCTGCTTCTGGGCTTCTCACTTGTGACCCACGTG...TGTGGGAGGTGGGGACTGAGGTGTTTGCAGGGGAGGCTCGATGGCTGCGCTCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR-3UTR TCA 90 bp | TTGCTGGGAATTGGACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTGCCGAGTCCAGCCAGTGTaGCGCTGGCAGAGGCCCACA | + |
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Preference number: 2 (lower is better) Translates to: LLGIGLRTSGRAVSALNCRVQPV*RWQRPT Trigger: TGTGGGCCTCTGCCAGCGTCACACTGGCTGGACTCG...GCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTCCAATTCCCAGCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
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| 3UTR-3UTR CCA 90 bp | GAGAAGCCCAGAAGCAGCACTGTCCACTCCTGCTTTGGTATGTCAGGTCACCTCCACACATCTGGCACGTaGGTCACAAGTGAGAAGCCC | + |
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Preference number: 2 (lower is better) Translates to: EKPRSSTVHSCFGMSGHLHTSGT*VTSEKP Trigger: GGGCTTCTCACTTGTGACCCACGTGCCAGATGTGTG...GAGGTGACCTGACATACCAAAGCAGGAGTGGACAGTGCTGCTTCTGGGCTTCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR-3UTR TCA 90 bp | ACAAGTGAGAAGCCCAGAAGCAGCACTGTCCACTCCTGCTTTGGTATGTCAGGTCACGTGGGTCACAAGTaGGAAGCCCAGAAGCAGCAC | + |
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Preference number: 2 (lower is better) Translates to: TSEKPRSSTVHSCFGMSGHVGHK*EAQKQH Trigger: GTGCTGCTTCTGGGCTTCTCACTTGTGACCCACGTG...ACCTGACATACCAAAGCAGGAGTGGACAGTGCTGCTTCTGGGCTTCTCACTTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR-3UTR TCA 90 bp | GAGAAGCCCAGAAGCAGCACTGTCCACTCCTGCTTTGGTATGTCAGGTCACCTCGAAACACTGCCTATGTaGAAATCCTCATCTAGACAC | + |
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Preference number: 2 (lower is better) Translates to: EKPRSSTVHSCFGMSGHLETLPM*KSSSRH Trigger: GTGTCTAGATGAGGATTTTCACATAGGCAGTGTTTC...GAGGTGACCTGACATACCAAAGCAGGAGTGGACAGTGCTGCTTCTGGGCTTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR-3UTR CCA 90 bp | GAGAAGCCCAGAAGCAGCACTGTCCACTCCTGCTTTGGTATGTCAGGTCACCTCAAATCCAGACTCCTGTaGCTACACATCTATACCTGT | + |
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Preference number: 2 (lower is better) Translates to: EKPRSSTVHSCFGMSGHLKSRLL*LHIYTC Trigger: ACAGGTATAGATGTGTAGCCACAGGAGTCTGGATTT...GAGGTGACCTGACATACCAAAGCAGGAGTGGACAGTGCTGCTTCTGGGCTTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR-3UTR CCA 90 bp | GCTAAGAAATCAGCTTCATTGTCTGCCGAGATGTTCAGGCCAGAAACAGCATTGGCCATGAGGATGGGTTaGCTCTACCGACTGACTGAC | + |
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Preference number: 2 (lower is better) Translates to: AKKSASLSAEMFRPETALAMRMG*LYRLTD Trigger: GTCAGTCAGTCGGTAGAGCCAACCCATCCTCATGGC...CAATGCTGTTTCTGGCCTGAACATCTCGGCAGACAATGAAGCTGATTTCTTAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000234148.2 ENSMUST00000234415.2 |
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| 3UTR CAA 90 bp | AAATCAGCTTCATTGTCTGCCGAGATGTTCAGGCCAGAAACAGCATaGAACAGCTCCCGTTCATTGAGGGCTTCCGTTACTCCTCCTTTC | + |
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Preference number: 2 (lower is better) Translates to: KSASLSAEMFRPETA*NSSRSLRASVTPPF Trigger: GAAAGGAGGAGTAACGGAAGCCCTCAATGAACGGGAGCTGTTCAATGCTGTTTCTGGCCTGAACATCTCGGCAGACAATGAAGCTGATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000234148.2 ENSMUST00000234415.2 |
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| 3UTR-3UTR GCA 90 bp | CTAGGAAGGGCTAATTTAAAACAGCAACATCCACCCAAAGACGCAAGGGAAAGCAGCACTGTCCACTCCTaGTTTGGTATGTCAGGTCAC | + |
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Preference number: 2 (lower is better) Translates to: LGRANLKQQHPPKDARESSTVHS*FGMSGH Trigger: GTGACCTGACATACCAAAGCAGGAGTGGACAGTGCT...GCTTTCCCTTGCGTCTTTGGGTGGATGTTGCTGTTTTAAATTAGCCCTTCCTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR-3UTR GCA 90 bp | AACAGCAACATCCACCCAAAGACGCAAGGGAAAGCAGGAGGCGAGCGGAATGGACACATTTGGAAACACTaGCTATGTGAAAATCCTCAT | + |
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Preference number: 2 (lower is better) Translates to: NSNIHPKTQGKAGGERNGHIWKH*LCENPH Trigger: ATGAGGATTTTCACATAGGCAGTGTTTCCAAATGTG...TCCATTCCGCTCGCCTCCTGCTTTCCCTTGCGTCTTTGGGTGGATGTTGCTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR-3UTR GCA 90 bp | AAAAATTGCACACATCTGGCACGTGGGTCACAAGTGAGAAGCCCAGAAGCAGCAGTAGTGATGTCTAAATaGCTACTTGCTCTGCAGCAC | + |
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Preference number: 2 (lower is better) Translates to: KNCTHLARGSQVRSPEAAVVMSK*LLALQH Trigger: GTGCTGCAGAGCAAGTAGGCATTTAGACATCACTAC...TGCTGCTTCTGGGCTTCTCACTTGTGACCCACGTGCCAGATGTGTGCAATTTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234148.2 |
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| 3UTR-3UTR GCA 90 bp | AGAACTGTGAAACATTCCTACAGTCACGGAATAAGAACTCCAGGCCATGAGGATAGCACTGTCCACTCCTaGTTTGGTATGTCAGGTCAC | + |
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Preference number: 2 (lower is better) Translates to: RTVKHSYSHGIRTPGHEDSTVHS*FGMSGH Trigger: GTGACCTGACATACCAAAGCAGGAGTGGACAGTGCT...ATCCTCATGGCCTGGAGTTCTTATTCCGTGACTGTAGGAATGTTTCACAGTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234148.2 |
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| 3UTR-3UTR GCA 90 bp | GAAATCCTTTTATATTTATCTTTCAGAAACCTGTCACCTCTCCTGGCTATGAGACCATCGAGCCTCCCCTaGAAACACCTCAGTCCCCAC | + |
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Preference number: 2 (lower is better) Translates to: EILLYLSFRNLSPLLAMRPSSLP*KHLSPH Trigger: GTGGGGACTGAGGTGTTTGCAGGGGAGGCTCGATGG...TCTCATAGCCAGGAGAGGTGACAGGTTTCTGAAAGATAAATATAAAAGGATTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR-3UTR CCA 90 bp | TCTTTGTGTGGAGCAGCAAACATAAGTGGGATGAGCCACCTAAATTCACTCCTCAGAGCAAGCAAGCACTaGTCTTCAGAACAAGGCTCA | + |
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Preference number: 2 (lower is better) Translates to: SLCGAANISGMSHLNSLLRASKH*SSEQGS Trigger: TGAGCCTTGTTCTGAAGACCAGTGCTTGCTTGCTCT...GAGGAGTGAATTTAGGTGGCTCATCCCACTTATGTTTGCTGCTCCACACAAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR-3UTR TCA 90 bp | TGTGTCCAGCCAATAATTTCTCATCATTTAAATCTTTGTGTGGAGCAGCAAACAAAGAACTCCAGGCCATaGGGATGGGTTGGCTCTACC | + |
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Preference number: 2 (lower is better) Translates to: CVQPIISHHLNLCVEQQTKNSRP*GWVGST Trigger: GGTAGAGCCAACCCATCCTCATGGCCTGGAGTTCTT...TGTTTGCTGCTCCACACAAAGATTTAAATGATGAGAAATTATTGGCTGGACACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234148.2 |
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| 3UTR-3UTR CCA 90 bp | GCTACACAGAGAAACCCTGCCTTGAAAAACAAACAAACAAACAAACAAACAAACCACACATCTGGCACGTaGGTCACAAGTGAGAAGCCC | + |
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Preference number: 2 (lower is better) Translates to: ATQRNPALKNKQTNKQTNHTSGT*VTSEKP Trigger: GGGCTTCTCACTTGTGACCCACGTGCCAGATGTGTG...GTTTGTTTGTTTGTTTGTTTGTTTGTTTTTCAAGGCAGGGTTTCTCTGTGTAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
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| 3UTR-3UTR TCA 90 bp | TTTATATTTATCTTTCAGAAACCTGTCACCTCTCCTGGCTATGAGACGGAAATGACATGTTATACTCGCTaGGGTCAGCATGCACAAGGG | + |
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Preference number: 2 (lower is better) Translates to: FIFIFQKPVTSPGYETEMTCYTR*GQHAQG Trigger: CCCTTGTGCATGCTGACCTCAGCGAGTATAACATGT...CATTTCCGTCTCATAGCCAGGAGAGGTGACAGGTTTCTGAAAGATAAATATAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234148.2 |
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| 3UTR-3UTR GCA 90 bp | CGGAAATGTAGAATTCCACACATCTACGGTGTACCAATAAAATGCTTATGTCCATGCCGAGTTAAAAATTaGACACATCTGGCACGTGGG | + |
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Preference number: 2 (lower is better) Translates to: RKCRIPHIYGVPIKCLCPCRVKN*THLARG Trigger: CCCACGTGCCAGATGTGTGCAATTTTTAACTCGGCA...TGGACATAAGCATTTTATTGGTACACCGTAGATGTGTGGAATTCTACATTTCCG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR-3UTR GCA 90 bp | AGCCAGGGCTACACAGAGAAACCCTGCCTTGAAAAACAAACAAACAAACAAACACCCATTCTTACCTTCTaGCCTTCCAGATACTTTGTA | + |
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Preference number: 2 (lower is better) Translates to: SQGYTEKPCLEKQTNKQTPILTF*PSRYFV Trigger: TACAAAGTATCTGGAAGGGCAGAAGGTAAGAATGGG...TGTTTGTTTGTTTGTTTGTTTTTCAAGGCAGGGTTTCTCTGTGTAGCCCTGGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
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| 3UTR-3UTR CCA 90 bp | TTCAGGCTGTGTCTTCCACTTACTGAACAGCTCCACTTACTTTGTTCTAGTTCTAAGCAGTACAACTGTTaGACAAGGAATTCCAGCCTT | + |
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Preference number: 2 (lower is better) Translates to: FRLCLPLTEQLHLLCSSSKQYNC*TRNSSL Trigger: AAGGCTGGAATTCCTTGTCCAACAGTTGTACTGCTT...AGAACTAGAACAAAGTAAGTGGAGCTGTTCAGTAAGTGGAAGACACAGCCTGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234148.2 |
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| 3UTR-3UTR GCA 90 bp | TGTGTCCAGCCAATAATTTCTCATCATTTAAATCTTTGTGTGGAGCAGCAAACATGCCGAGTTAAAAATTaGACACATCTGGCACGTGGG | + |
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Preference number: 2 (lower is better) Translates to: CVQPIISHHLNLCVEQQTCRVKN*THLARG Trigger: CCCACGTGCCAGATGTGTGCAATTTTTAACTCGGCA...TGTTTGCTGCTCCACACAAAGATTTAAATGATGAGAAATTATTGGCTGGACACA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR-3UTR GCA 90 bp | AGCTGTTCAGGCTGTGTCTTCCACTTACTGAACAGCTCCACTTACTTTGTTCTAGGTGTACCAATAAAATaGTTATGTCCATTTCCACCA | + |
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Preference number: 2 (lower is better) Translates to: SCSGCVFHLLNSSTYFVLGVPIK*LCPFPP Trigger: TGGTGGAAATGGACATAAGCATTTTATTGGTACACC...TAGAACAAAGTAAGTGGAGCTGTTCAGTAAGTGGAAGACACAGCCTGAACAGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR-3UTR GCA 90 bp | AATTTCTCATCATTTAAATCTTTGTGTGGAGCAGCAAACATAAGTGGGATGAGCTTTCAGAAACGAGGCTaGTTTCCTCCCGTTCTTCTG | + |
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Preference number: 2 (lower is better) Translates to: NFSSFKSLCGAANISGMSFQKRG*FPPVLL Trigger: CAGAAGAACGGGAGGAAAGCAGCCTCGTTTCTGAAA...GCTCATCCCACTTATGTTTGCTGCTCCACACAAAGATTTAAATGATGAGAAATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234148.2 |
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| 3UTR-3UTR CCA 90 bp | CTGTGTCTTCCACTTACTGAACAGCTCCACTTACTTTGTTCTAGTTCTCTCCAAGCACACTCCAAGCAATaGTTTGAGAAAGAATATGTG | + |
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Preference number: 2 (lower is better) Translates to: LCLPLTEQLHLLCSSSLQAHSKQ*FEKEYV Trigger: CACATATTCTTTCTCAAACCATTGCTTGGAGTGTGC...TTGGAGAGAACTAGAACAAAGTAAGTGGAGCTGTTCAGTAAGTGGAAGACACAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR-3UTR GCA 90 bp | GAACAGCTCCACTTACTTTGTTCTAGTTCTCTCCAAATGATTAGCAATCAATATTCGCTGAGGTCAGCATaGACAAGGGTACATTCGTTA | + |
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Preference number: 2 (lower is better) Translates to: EQLHLLCSSSLQMISNQYSLRSA*TRVHSL Trigger: TAACGAATGTACCCTTGTGCATGCTGACCTCAGCGA...ATATTGATTGCTAATCATTTGGAGAGAACTAGAACAAAGTAAGTGGAGCTGTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234148.2 |
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| 3UTR-3UTR GCA 90 bp | AGCCAGGGCTACACAGAGAAACCCTGCCTTGAAAAACAAACAAACAAACAAACAAAACCAAAACTGCACTaGTTACTTTGCTATAGAAAG | + |
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Preference number: 2 (lower is better) Translates to: SQGYTEKPCLEKQTNKQTKPKLH*LLCYRK Trigger: CTTTCTATAGCAAAGTAAGCAGTGCAGTTTTGGTTT...TGTTTGTTTGTTTGTTTGTTTTTCAAGGCAGGGTTTCTCTGTGTAGCCCTGGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
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| 3UTR-3UTR CCA 90 bp | GAAATCCTTTTATATTTATCTTTCAGAAACCTGTCACCTCTCCTGGCTATGAGAAAATCCAGACTCCTGTaGCTACACATCTATACCTGT | + |
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Preference number: 2 (lower is better) Translates to: EILLYLSFRNLSPLLAMRKSRLL*LHIYTC Trigger: ACAGGTATAGATGTGTAGCCACAGGAGTCTGGATTT...TCTCATAGCCAGGAGAGGTGACAGGTTTCTGAAAGATAAATATAAAAGGATTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR-3UTR CCA 90 bp | GCTACACAGAGAAACCCTGCCTTGAAAAACAAACAAACAAACAAACAAACAAACAGCAGCAAACATAAGTaGGATGAGCCACCTAAATTC | + |
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Preference number: 2 (lower is better) Translates to: ATQRNPALKNKQTNKQTNSSKHK*DEPPKF Trigger: GAATTTAGGTGGCTCATCCCACTTATGTTTGCTGCT...GTTTGTTTGTTTGTTTGTTTGTTTGTTTTTCAAGGCAGGGTTTCTCTGTGTAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
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| 3UTR CAA 90 bp | TTCTGCAATTTGTGTCCAGCCAATAATTTCTCATCATTTAAATCTTaGTGTGGAGCAGCAAACATAAGTGGGATGAGCCACCTAAATTCA | + |
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Preference number: 2 (lower is better) Translates to: FCNLCPANNFSSFKS*CGAANISGMSHLNS Trigger: TGAATTTAGGTGGCTCATCCCACTTATGTTTGCTGCTCCACACAAAGATTTAAATGATGAGAAATTATTGGCTGGACACAAATTGCAGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR-3UTR TCA 90 bp | GAACAGCTCCACTTACTTTGTTCTAGTTCTCTCCAAATGATTAGCAATCAATATGAAACACTGCCTATGTaGAAATCCTCATCTAGACAC | + |
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Preference number: 2 (lower is better) Translates to: EQLHLLCSSSLQMISNQYETLPM*KSSSRH Trigger: GTGTCTAGATGAGGATTTTCACATAGGCAGTGTTTC...ATATTGATTGCTAATCATTTGGAGAGAACTAGAACAAAGTAAGTGGAGCTGTTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR TCA 72 bp | ACAAGGCTCACCTTCTCAGGCCGAGTCCAGCCAGTGTaGCGCTGGCAGAGGCCCACAGCCGAGTTAGCCGGT | + |
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Preference number: 3 (lower is better) Translates to: TRLTFSGRVQPV*RWQRPTAELAG Trigger: ACCGGCTAACTCGGCTGTGGGCCTCTGCCAGCGTCACACTGGCTGGACTCGGCCTGAGAAGGTGAGCCTTGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR-3UTR CAA 90 bp | AGAGCGCAGCCATCGAGCCTCCCCTGCAAACACCTCAGTCCCCACCTCCCACATCAGCCTTCTGCATTCTaGATGGCACATTCTGTTGGT | + |
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Preference number: 3 (lower is better) Translates to: RAQPSSLPCKHLSPHLPHQPSAF*MAHSVG Trigger: ACCAACAGAATGTGCCATCAAGAATGCAGAAGGCTG...ATGTGGGAGGTGGGGACTGAGGTGTTTGCAGGGGAGGCTCGATGGCTGCGCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234148.2 |
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| 3UTR GCA 72 bp | ACAAGTGAGAAGCCCAGAAGCAGCACTGTCCACTCCTaGTTTGGTATGTCAGGTCACCTCCACTCGCTGGCT | + |
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Preference number: 3 (lower is better) Translates to: TSEKPRSSTVHS*FGMSGHLHSLA Trigger: AGCCAGCGAGTGGAGGTGACCTGACATACCAAAGCAGGAGTGGACAGTGCTGCTTCTGGGCTTCTCACTTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR CCA 72 bp | CGGAACTGGGGTAATGAGGTGAGAGCAAGCAAGCACTaGTCTTCAGAACAAGGCTCACCTTCTCAGGCCGAG | + |
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Preference number: 3 (lower is better) Translates to: RNWGNEVRASKH*SSEQGSPSQAE Trigger: CTCGGCCTGAGAAGGTGAGCCTTGTTCTGAAGACCAGTGCTTGCTTGCTCTCACCTCATTACCCCAGTTCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR CCA 72 bp | TCCGTCACCGCTGTACTAGTCGGCAGACAGCACAGGTaGGCTTCCATCATCTTTCAGAAACGAGGCTGCTTT | + |
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Preference number: 3 (lower is better) Translates to: SVTAVLVGRQHR*ASIIFQKRGCF Trigger: AAAGCAGCCTCGTTTCTGAAAGATGATGGAAGCCCACCTGTGCTGTCTGCCGACTAGTACAGCGGTGACGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234148.2 |
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| 3UTR TCA 72 bp | GGATCCAATGTAACTCCCGGAACTGGGGTAATGAGGTaGGAGCAAGCAAGCACTGGTCTTCAGAACAAGGCT | + |
|
Preference number: 3 (lower is better) Translates to: GSNVTPGTGVMR*EQASTGLQNKA Trigger: AGCCTTGTTCTGAAGACCAGTGCTTGCTTGCTCTCACCTCATTACCCCAGTTCCGGGAGTTACATTGGATCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| 3UTR GCA 72 bp | CTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTaGTGTCATCTCTCCAGCTCGGTAACATACATACAT | + |
|
Preference number: 3 (lower is better) Translates to: LRTSGRAVSALN*CHLSSSVTYIH Trigger: ATGTATGTATGTTACCGAGCTGGAGAGATGACAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
||
| 3UTR CCA 72 bp | TCCCGTTCATTGAGGGCTTCCGTTACTCCTCCTTTCTaGAAGAACTGTGAAACATTCCTACAGTCACGGAAT | + |
|
Preference number: 3 (lower is better) Translates to: SRSLRASVTPPF*KNCETFLQSRN Trigger: ATTCCGTGACTGTAGGAATGTTTCACAGTTCTTCCAGAAAGGAGGAGTAACGGAAGCCCTCAATGAACGGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000234148.2 ENSMUST00000234415.2 |
||
| 3UTR-3UTR CAA 90 bp | TTCAGGCTGTGTCTTCCACTTACTGAACAGCTCCACTTACTTTGTTCTAGTTCTCGGTCAATTCAGTACTaGAGCTGTTCAGGCTGTGTC | + |
|
Preference number: 3 (lower is better) Translates to: FRLCLPLTEQLHLLCSSSRSIQY*SCSGCV Trigger: GACACAGCCTGAACAGCTCAAGTACTGAATTGACCG...AGAACTAGAACAAAGTAAGTGGAGCTGTTCAGTAAGTGGAAGACACAGCCTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| 3UTR TCA 72 bp | AGACCTTCCCAGCATGCCACAACATGTTATACTCGCTaGGGTCAGCATGCACAAGGGTACATTCGTTATATA | + |
|
Preference number: 3 (lower is better) Translates to: RPSQHATTCYTR*GQHAQGYIRYI Trigger: TATATAACGAATGTACCCTTGTGCATGCTGACCTCAGCGAGTATAACATGTTGTGGCATGCTGGGAAGGTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000234148.2 ENSMUST00000234415.2 |
||
| 3UTR GCA 72 bp | GCATGCCACAACATGTTATACTCGCTGAGGTCAGCATaGACAAGGGTACATTCGTTATATAATTGCTGCATC | + |
|
Preference number: 3 (lower is better) Translates to: ACHNMLYSLRSA*TRVHSLYNCCI Trigger: GATGCAGCAATTATATAACGAATGTACCCTTGTGCATGCTGACCTCAGCGAGTATAACATGTTGTGGCATGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000234148.2 ENSMUST00000234415.2 |
||
| 3UTR TCA 72 bp | ATTTATCTTTCAGAAACCTGTCACCTCTCCTGGCTATaGGACGGAAATGTAGAATTCCACACATCTACGGTG | + |
|
Preference number: 3 (lower is better) Translates to: IYLSETCHLSWL*DGNVEFHTSTV Trigger: CACCGTAGATGTGTGGAATTCTACATTTCCGTCTCATAGCCAGGAGAGGTGACAGGTTTCTGAAAGATAAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| 3UTR GCA 72 bp | AGTGACATTTTATTCTTTCAATGCCGAGTTAAAAATTaGACACATCTGGCACGTGGGTCACAAGTGAGAAGC | + |
|
Preference number: 3 (lower is better) Translates to: SDILFFQCRVKN*THLARGSQVRS Trigger: GCTTCTCACTTGTGACCCACGTGCCAGATGTGTGCAATTTTTAACTCGGCATTGAAAGAATAAAATGTCACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| 3UTR GCA 72 bp | TATTTACTTATTTTATGTGAGTACACTGTAGCTGTCTaGAGACACACCAGAAGAGGGCATCAGAGCCTATTA | + |
|
Preference number: 3 (lower is better) Translates to: YLLILCEYTVAV*RHTRRGHQSLL Trigger: TAATAGGCTCTGATGCCCTCTTCTGGTGTGTCTGCAGACAGCTACAGTGTACTCACATAAAATAAGTAAATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
||
| 3UTR GCA 72 bp | AAACAAACAAACAAAACAAACAAACCAAAACTGCACTaGTTACTTTGCTATAGAAAGGGTGTCTTGGTGCCA | + |
|
Preference number: 3 (lower is better) Translates to: KQTNKTNKPKLH*LLCYRKGVLVP Trigger: TGGCACCAAGACACCCTTTCTATAGCAAAGTAAGCAGTGCAGTTTTGGTTTGTTTGTTTTGTTTGTTTGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
||
| 3UTR-3UTR CAA 90 bp | TGTAGAATTCCACACATCTACGGTGTACCAATAAAATGCTTATGTCCATTTCCAACTTCAGATCATGAGTaGTATAAAATCCAGACTCCT | + |
|
Preference number: 3 (lower is better) Translates to: CRIPHIYGVPIKCLCPFPTSDHE*YKIQTP Trigger: AGGAGTCTGGATTTTATACAACTCATGATCTGAAGT...TGGAAATGGACATAAGCATTTTATTGGTACACCGTAGATGTGTGGAATTCTACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| 3UTR TCA 72 bp | AACATAAGTGGGATGAGCCACCTAAATTCACTCCTCTaGAATGCAATTAAAGCAGTAGAACAGAAACAAAAA | + |
|
Preference number: 3 (lower is better) Translates to: NISGMSHLNSLL*NAIKAVEQKQK Trigger: TTTTTGTTTCTGTTCTACTGCTTTAATTGCATTTCAGAGGAGTGAATTTAGGTGGCTCATCCCACTTATGTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| 3UTR GCA 72 bp | CAAACAAACAAACAAACAAAACAAACAAACCAAAACTaGACTGCTTACTTTGCTATAGAAAGGGTGTCTTGG | + |
|
Preference number: 3 (lower is better) Translates to: QTNKQTKQTNQN*TAYFAIERVSW Trigger: CCAAGACACCCTTTCTATAGCAAAGTAAGCAGTGCAGTTTTGGTTTGTTTGTTTTGTTTGTTTGTTTGTTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
||
| CDS-3UTR CCA 90 bp | AGAGCGCAGCCATCGAGCCTCCCCTGCAAACACCTCAGTCCCCACCTCCCACATCCCATGGGCACTTACTaGGTCCCCAAGCTGCTGCGG | + |
|
Preference number: 4 (lower is better) Translates to: RAQPSSLPCKHLSPHLPHPMGTY*VPKLLR Trigger: CCGCAGCAGCTTGGGGACCCAGTAAGTGCCCATGGG...ATGTGGGAGGTGGGGACTGAGGTGTTTGCAGGGGAGGCTCGATGGCTGCGCTCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| CDS-3UTR CCA 90 bp | CCCAGAAGCAGCACTGTCCACTCCTGCTTTGGTATGTCAGGTCACCTCCACTCGAGCTGCTGCGGGCCCTaGCTCAGGCGAAGACACTCC | + |
|
Preference number: 4 (lower is better) Translates to: PRSSTVHSCFGMSGHLHSSCCGP*LRRRHS Trigger: GGAGTGTCTTCGCCTGAGCCAGGGCCCGCAGCAGCT...CGAGTGGAGGTGACCTGACATACCAAAGCAGGAGTGGACAGTGCTGCTTCTGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| CDS-3UTR CCA 90 bp | CTGTCCACTCCTGCTTTGGTATGTCAGGTCACCTCCACTCGCTGGCTATGGCAGAGCTGCTGCGGGCCCTaGCTCAGGCGAAGACACTCC | + |
|
Preference number: 4 (lower is better) Translates to: LSTPALVCQVTSTRWLWQSCCGP*LRRRHS Trigger: GGAGTGTCTTCGCCTGAGCCAGGGCCCGCAGCAGCT...CTGCCATAGCCAGCGAGTGGAGGTGACCTGACATACCAAAGCAGGAGTGGACAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| CDS-3UTR TCA 90 bp | TCCACCCAAAGACGCAAGGGAAAGCAGGAGGCGAGCGGAATGGAGCAGAGCGCACAGGATACTGTGTTTTaGGGGGTAGCCCATGGGCAC | + |
|
Preference number: 4 (lower is better) Translates to: STQRRKGKQEASGMEQSAQDTVF*GVAHGH Trigger: GTGCCCATGGGCTACCCCTCAAAACACAGTATCCTG...TGCGCTCTGCTCCATTCCGCTCGCCTCCTGCTTTCCCTTGCGTCTTTGGGTGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| 3UTR CAA 72 bp | GTGAGAAGCCCAGAAGCAGCACTGTCCACTCCTGCTTaGGTATGTCAGGTCACCTCCACTCGCTGGCTATGG | + |
|
Preference number: 4 (lower is better) Translates to: VRSPEAALSTPA*VCQVTSTRWLW Trigger: CCATAGCCAGCGAGTGGAGGTGACCTGACATACCAAAGCAGGAGTGGACAGTGCTGCTTCTGGGCTTCTCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| CDS-3UTR TCA 90 bp | AGAGCGCAGCCATCGAGCCTCCCCTGCAAACACCTCAGTCCCCACCTCCCACATCTTTGCTATCACCATTaGACTTCTTTTCCTCACGCC | + |
|
Preference number: 4 (lower is better) Translates to: RAQPSSLPCKHLSPHLPHLCYHH*TSFPHA Trigger: GGCGTGAGGAAAAGAAGTTCAATGGTGATAGCAAAG...ATGTGGGAGGTGGGGACTGAGGTGTTTGCAGGGGAGGCTCGATGGCTGCGCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| CDS-3UTR GCA 90 bp | CGCAGCCATCGAGCCTCCCCTGCAAACACCTCAGTCCCCACCTCCCACATTTGGCAGGCTCCCTCCATATaGATGAAAGACAACAGATTC | + |
|
Preference number: 4 (lower is better) Translates to: RSHRASPANTSVPTSHIWQAPSI*MKDNRF Trigger: GAATCTGTTGTCTTTCATGCATATGGAGGGAGCCTG...CCAAATGTGGGAGGTGGGGACTGAGGTGTTTGCAGGGGAGGCTCGATGGCTGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
||
| CDS-3UTR GCA 90 bp | AGCCAGGGCTACACAGAGAAACCCTGCCTTGAAAAACAAACAAACAAACAAACAGGGTCCCCAAGCTGCTaGGGGCCCTGGCTCAGGCGA | + |
|
Preference number: 4 (lower is better) Translates to: SQGYTEKPCLEKQTNKQTGSPSC*GPWLRR Trigger: TCGCCTGAGCCAGGGCCCGCAGCAGCTTGGGGACCC...TGTTTGTTTGTTTGTTTGTTTTTCAAGGCAGGGTTTCTCTGTGTAGCCCTGGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
||
| CDS-3UTR GCA 90 bp | CTATCTCAGCTAAGAAATCAGCTTCATTGTCTGCCGAGATGTTCAGGCCAGAAAACTGGGTCCCCAAGCTaGTGCGGGCCCTGGCTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: LSQLRNQLHCLPRCSGQKTGSPS*CGPWLR Trigger: CCTGAGCCAGGGCCCGCAGCAGCTTGGGGACCCAGT...TTTCTGGCCTGAACATCTCGGCAGACAATGAAGCTGATTTCTTAGCTGAGATAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000234148.2 |
||
| CDS-3UTR GCA 90 bp | AGGCGAGCGGAATGGAGCAGAGCGCAGCCATCGAGCCTCCCCTGCAAACACCTCTGTCTTAGGATCAACTaGTTTTTCAGCGGTAGAATG | + |
|
Preference number: 4 (lower is better) Translates to: RRAEWSRAQPSSLPCKHLCLRIN*FFSGRM Trigger: CATTCTACCGCTGAAAAAGCAGTTGATCCTAAGACA...GAGGTGTTTGCAGGGGAGGCTCGATGGCTGCGCTCTGCTCCATTCCGCTCGCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| CDS-3UTR GCA 90 bp | AGGCGAGCGGAATGGAGCAGAGCGCAGCCATCGAGCCTCCCCTGCAAACACCTCATTCTTGTAAGATTGTaGATTTCTTTCTCTGCCCAC | + |
|
Preference number: 4 (lower is better) Translates to: RRAEWSRAQPSSLPCKHLILVRL*ISFSAH Trigger: GTGGGCAGAGAAAGAAATGCACAATCTTACAAGAAT...GAGGTGTTTGCAGGGGAGGCTCGATGGCTGCGCTCTGCTCCATTCCGCTCGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
||
| CDS-3UTR CCA 90 bp | GCTAAGAAATCAGCTTCATTGTCTGCCGAGATGTTCAGGCCAGAAACAGCATTGCCCATGGGCACTTACTaGGTCCCCAAGCTGCTGCGG | + |
|
Preference number: 4 (lower is better) Translates to: AKKSASLSAEMFRPETALPMGTY*VPKLLR Trigger: CCGCAGCAGCTTGGGGACCCAGTAAGTGCCCATGGG...CAATGCTGTTTCTGGCCTGAACATCTCGGCAGACAATGAAGCTGATTTCTTAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234148.2 |
||
| CDS-3UTR GCA 90 bp | TTTATATTTATCTTTCAGAAACCTGTCACCTCTCCTGGCTATGAGACGGAAATGGGGTCCCCAAGCTGCTaGGGGCCCTGGCTCAGGCGA | + |
|
Preference number: 4 (lower is better) Translates to: FIFIFQKPVTSPGYETEMGSPSC*GPWLRR Trigger: TCGCCTGAGCCAGGGCCCGCAGCAGCTTGGGGACCC...CATTTCCGTCTCATAGCCAGGAGAGGTGACAGGTTTCTGAAAGATAAATATAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| CDS-3UTR GCA 90 bp | GAGAAGCCCAGAAGCAGCACTGTCCACTCCTGCTTTGGTATGTCAGGTCACCTCTCGCTGAGGTCAGCATaGACAAGGGTACATTCGTTA | + |
|
Preference number: 4 (lower is better) Translates to: EKPRSSTVHSCFGMSGHLSLRSA*TRVHSL Trigger: TAACGAATGTACCCTTGTGCATGCTGACCTCAGCGA...GAGGTGACCTGACATACCAAAGCAGGAGTGGACAGTGCTGCTTCTGGGCTTCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
||
| CDS-3UTR GCA 90 bp | GAGAAGCCCAGAAGCAGCACTGTCCACTCCTGCTTTGGTATGTCAGGTCACCTCCAGACCTTCCCAGCATaGCACAACATGTTATACTCG | + |
|
Preference number: 4 (lower is better) Translates to: EKPRSSTVHSCFGMSGHLQTFPA*HNMLYS Trigger: CGAGTATAACATGTTGTGGCATGCTGGGAAGGTCTG...GAGGTGACCTGACATACCAAAGCAGGAGTGGACAGTGCTGCTTCTGGGCTTCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
||
| CDS-3UTR TCA 90 bp | ACAAGTGAGAAGCCCAGAAGCAGCACTGTCCACTCCTGCTTTGGTATGTCAGGTACATGTTATACTCGCTaGGGTCAGCATGCACAAGGG | + |
|
Preference number: 4 (lower is better) Translates to: TSEKPRSSTVHSCFGMSGTCYTR*GQHAQG Trigger: CCCTTGTGCATGCTGACCTCAGCGAGTATAACATGT...ACCTGACATACCAAAGCAGGAGTGGACAGTGCTGCTTCTGGGCTTCTCACTTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
||
| CDS-3UTR GCA 90 bp | TTTATATTTATCTTTCAGAAACCTGTCACCTCTCCTGGCTATGAGACGGAAATGACTGGGTCCCCAAGCTaGTGCGGGCCCTGGCTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: FIFIFQKPVTSPGYETEMTGSPS*CGPWLR Trigger: CCTGAGCCAGGGCCCGCAGCAGCTTGGGGACCCAGT...CATTTCCGTCTCATAGCCAGGAGAGGTGACAGGTTTCTGAAAGATAAATATAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| CDS-3UTR TCA 90 bp | ACATCTGGCACGTGGGTCACAAGTGAGAAGCCCAGAAGCAGCACTGTCCACTCCTGTTTTCTCCAGAAATaGATGGTCCTTCAGCAACAA | + |
|
Preference number: 4 (lower is better) Translates to: TSGTWVTSEKPRSSTVHSCFLQK*MVLQQQ Trigger: TTGTTGCTGAAGGACCATTCATTTCTGGAGAAAACA...GGAGTGGACAGTGCTGCTTCTGGGCTTCTCACTTGTGACCCACGTGCCAGATGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| CDS-3UTR GCA 90 bp | ACAAGTGAGAAGCCCAGAAGCAGCACTGTCCACTCCTGCTTTGGTATGTCAGGTTTTCAGAAACGAGGCTaGTTTCCTCCCGTTCTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: TSEKPRSSTVHSCFGMSGFQKRG*FPPVLL Trigger: CAGAAGAACGGGAGGAAAGCAGCCTCGTTTCTGAAA...ACCTGACATACCAAAGCAGGAGTGGACAGTGCTGCTTCTGGGCTTCTCACTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
||
| 3UTR CAA 72 bp | TCATTGTCTGCCGAGATGTTCAGGCCAGAAACAGCATaGAACAGCTCCCGTTCATTGAGGGCTTCCGTTACT | + |
|
Preference number: 4 (lower is better) Translates to: SLSAEMFRPETA*NSSRSLRASVT Trigger: AGTAACGGAAGCCCTCAATGAACGGGAGCTGTTCAATGCTGTTTCTGGCCTGAACATCTCGGCAGACAATGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000234148.2 ENSMUST00000234415.2 |
||
| CDS-3UTR GCA 90 bp | GAGAAGCCCAGAAGCAGCACTGTCCACTCCTGCTTTGGTATGTCAGGTCACCTCTTACCTCCCTCCATATaGATGAAAGACAACAGATTC | + |
|
Preference number: 4 (lower is better) Translates to: EKPRSSTVHSCFGMSGHLLPPSI*MKDNRF Trigger: GAATCTGTTGTCTTTCATGCATATGGAGGGAGGTAA...GAGGTGACCTGACATACCAAAGCAGGAGTGGACAGTGCTGCTTCTGGGCTTCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234148.2 |
||
| CDS-3UTR CCA 90 bp | CTAGGAAGGGCTAATTTAAAACAGCAACATCCACCCAAAGACGCAAGGGAAAGCGGCAGACAGCACAGGTaGGCTTCCATCATCTTTCAG | + |
|
Preference number: 4 (lower is better) Translates to: LGRANLKQQHPPKDARESGRQHR*ASIIFQ Trigger: CTGAAAGATGATGGAAGCCCACCTGTGCTGTCTGCC...GCTTTCCCTTGCGTCTTTGGGTGGATGTTGCTGTTTTAAATTAGCCCTTCCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
||
| CDS-3UTR GCA 90 bp | CCCAGCATGCCACAACATGTTATACTCGCTGAGGTCAGCATGCACAAGGGTACACTCACGCCTAAGCTGTaGATCATATTCTCTGTCAAA | + |
|
Preference number: 4 (lower is better) Translates to: PSMPQHVILAEVSMHKGTLTPKL*IIFSVK Trigger: TTTGACAGAGAATATGATGCACAGCTTAGGCGTGAG...TGTACCCTTGTGCATGCTGACCTCAGCGAGTATAACATGTTGTGGCATGCTGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234148.2 |
||
| CDS-3UTR CCA 90 bp | CGGAAATGTAGAATTCCACACATCTACGGTGTACCAATAAAATGCTTATGTCCATTGAGGGGTAGCCCATaGGCACTTACTGGGTCCCCA | + |
|
Preference number: 4 (lower is better) Translates to: RKCRIPHIYGVPIKCLCPLRGSP*ALTGSP Trigger: TGGGGACCCAGTAAGTGCCCATGGGCTACCCCTCAA...TGGACATAAGCATTTTATTGGTACACCGTAGATGTGTGGAATTCTACATTTCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| CDS-3UTR CCA 90 bp | CCTCCTTTCTGGAAGAACTGTGAAACATTCCTACAGTCACGGAATAAGAACTCCTTTGGGAGTAGGAATTaGCTTTGCTGGTCTGTAGGG | + |
|
Preference number: 4 (lower is better) Translates to: PPFWKNCETFLQSRNKNSFGSRN*LCWSVG Trigger: CCCTACAGACCAGCAAAGCCAATTCCTACTCCCAAA...GGAGTTCTTATTCCGTGACTGTAGGAATGTTTCACAGTTCTTCCAGAAAGGAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234148.2 |
||
| CDS-3UTR TCA 90 bp | TGTAGAATTCCACACATCTACGGTGTACCAATAAAATGCTTATGTCCATTTCCACAGGATACTGTGTTTTaGGGGGTAGCCCATGGGCAC | + |
|
Preference number: 4 (lower is better) Translates to: CRIPHIYGVPIKCLCPFPQDTVF*GVAHGH Trigger: GTGCCCATGGGCTACCCCTCAAAACACAGTATCCTG...TGGAAATGGACATAAGCATTTTATTGGTACACCGTAGATGTGTGGAATTCTACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| CDS-3UTR CCA 90 bp | AGCCAGGGCTACACAGAGAAACCCTGCCTTGAAAAACAAACAAACAAACAAACATTTGGGAGTAGGAATTaGCTTTGCTGGTCTGTAGGG | + |
|
Preference number: 4 (lower is better) Translates to: SQGYTEKPCLEKQTNKQTFGSRN*LCWSVG Trigger: CCCTACAGACCAGCAAAGCCAATTCCTACTCCCAAA...TGTTTGTTTGTTTGTTTGTTTTTCAAGGCAGGGTTTCTCTGTGTAGCCCTGGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
||
| CDS-3UTR TCA 90 bp | GAACAGCTCCACTTACTTTGTTCTAGTTCTCTCCAAATGATTAGCAATCAATATAAGAACTCCAGGCCATaGGGATGGGTTGGCTCTACC | + |
|
Preference number: 4 (lower is better) Translates to: EQLHLLCSSSLQMISNQYKNSRP*GWVGST Trigger: GGTAGAGCCAACCCATCCTCATGGCCTGGAGTTCTT...ATATTGATTGCTAATCATTTGGAGAGAACTAGAACAAAGTAAGTGGAGCTGTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
||
| CDS-3UTR CCA 90 bp | CGGAAATGTAGAATTCCACACATCTACGGTGTACCAATAAAATGCTTATGTCCAAGGAATTGGCTTTGCTaGTCTGTAGGGATCGTCTCG | + |
|
Preference number: 4 (lower is better) Translates to: RKCRIPHIYGVPIKCLCPRNWLC*SVGIVS Trigger: CGAGACGATCCCTACAGACCAGCAAAGCCAATTCCT...TGGACATAAGCATTTTATTGGTACACCGTAGATGTGTGGAATTCTACATTTCCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| CDS-3UTR CCA 90 bp | GAACAGCTCCACTTACTTTGTTCTAGTTCTCTCCAAATGATTAGCAATCAATATGCCATGAGGATGGGTTaGCTCTACCGACTGACTGAC | + |
|
Preference number: 4 (lower is better) Translates to: EQLHLLCSSSLQMISNQYAMRMG*LYRLTD Trigger: GTCAGTCAGTCGGTAGAGCCAACCCATCCTCATGGC...ATATTGATTGCTAATCATTTGGAGAGAACTAGAACAAAGTAAGTGGAGCTGTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
||
| CDS-3UTR TCA 90 bp | GCTACACAGAGAAACCCTGCCTTGAAAAACAAACAAACAAACAAACAAACAAACTCCATCTGTAGCATCTaGGCCAGCATTAGGTCACTG | + |
|
Preference number: 4 (lower is better) Translates to: ATQRNPALKNKQTNKQTNSICSI*ASIRSL Trigger: CAGTGACCTAATGCTGGCTCAGATGCTACAGATGGA...GTTTGTTTGTTTGTTTGTTTGTTTGTTTTTCAAGGCAGGGTTTCTCTGTGTAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
||
| CDS-3UTR GCA 90 bp | TGTAGAATTCCACACATCTACGGTGTACCAATAAAATGCTTATGTCCATTTCCAGCTTCTTCTTCCAACTaGAGCTCTTTAGCCAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: CRIPHIYGVPIKCLCPFPASSSN*SSLASS Trigger: GGAGCTGGCTAAAGAGCTGCAGTTGGAAGAAGAAGC...TGGAAATGGACATAAGCATTTTATTGGTACACCGTAGATGTGTGGAATTCTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| CDS-3UTR GCA 90 bp | GAACAGCTCCACTTACTTTGTTCTAGTTCTCTCCAAATGATTAGCAATCAATATTCGTCTCGAGTGTCCTaGCAGTCAACCTCGTCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: EQLHLLCSSSLQMISNQYSSRVS*QSTSSS Trigger: TGAAGACGAGGTTGACTGGCAGGACACTCGAGACGA...ATATTGATTGCTAATCATTTGGAGAGAACTAGAACAAAGTAAGTGGAGCTGTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
||
| CDS-3UTR GCA 90 bp | CTCCACTTACTTTGTTCTAGTTCTCTCCAAATGATTAGCAATCAATATGTGAACTCGTCTCGAGTGTCCTaGCAGTCAACCTCGTCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: LHLLCSSSLQMISNQYVNSSRVS*QSTSSS Trigger: TGAAGACGAGGTTGACTGGCAGGACACTCGAGACGA...GTTCACATATTGATTGCTAATCATTTGGAGAGAACTAGAACAAAGTAAGTGGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| CDS-3UTR GCA 90 bp | TCTATCTCAGCTAAGAAATCAGCTTCATTGTCTGCCGAGATGTTCAGGCCAGAATGTCTTAGGATCAACTaGTTTTTCAGCGGTAGAATG | + |
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Preference number: 4 (lower is better) Translates to: SISAKKSASLSAEMFRPECLRIN*FFSGRM Trigger: CATTCTACCGCTGAAAAAGCAGTTGATCCTAAGACA...TTCTGGCCTGAACATCTCGGCAGACAATGAAGCTGATTTCTTAGCTGAGATAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234148.2 |
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| CDS-3UTR GCA 90 bp | TCTATCTCAGCTAAGAAATCAGCTTCATTGTCTGCCGAGATGTTCAGGCCAGAACTTCTTGTAAGATTGTaGATTTCTTTCTCTGCCCAC | + |
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Preference number: 4 (lower is better) Translates to: SISAKKSASLSAEMFRPELLVRL*ISFSAH Trigger: GTGGGCAGAGAAAGAAATGCACAATCTTACAAGAAG...TTCTGGCCTGAACATCTCGGCAGACAATGAAGCTGATTTCTTAGCTGAGATAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234415.2 |
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| CDS-3UTR TCA 90 bp | AAAGCTTCTATCTCAGCTAAGAAATCAGCTTCATTGTCTGCCGAGATGTTCAGGTGTTTTCTCCAGAAATaGATGGTCCTTCAGCAACAA | + |
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Preference number: 4 (lower is better) Translates to: KASISAKKSASLSAEMFRCFLQK*MVLQQQ Trigger: TTGTTGCTGAAGGACCATTCATTTCTGGAGAAAACA...CCTGAACATCTCGGCAGACAATGAAGCTGATTTCTTAGCTGAGATAGAAGCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234148.2 |
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| CDS-3UTR TCA 90 bp | CGGAAATGTAGAATTCCACACATCTACGGTGTACCAATAAAATGCTTATGTCCACTTTGCTATCACCATTaGACTTCTTTTCCTCACGCC | + |
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Preference number: 4 (lower is better) Translates to: RKCRIPHIYGVPIKCLCPLCYHH*TSFPHA Trigger: GGCGTGAGGAAAAGAAGTTCAATGGTGATAGCAAAG...TGGACATAAGCATTTTATTGGTACACCGTAGATGTGTGGAATTCTACATTTCCG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| CDS-3UTR CCA 90 bp | GAACAGCTCCACTTACTTTGTTCTAGTTCTCTCCAAATGATTAGCAATCAATATAGGAATTGGCTTTGCTaGTCTGTAGGGATCGTCTCG | + |
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Preference number: 4 (lower is better) Translates to: EQLHLLCSSSLQMISNQYRNWLC*SVGIVS Trigger: CGAGACGATCCCTACAGACCAGCAAAGCCAATTCCT...ATATTGATTGCTAATCATTTGGAGAGAACTAGAACAAAGTAAGTGGAGCTGTTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| 3UTR CAA 72 bp | TTGTGTCCAGCCAATAATTTCTCATCATTTAAATCTTaGTGTGGAGCAGCAAACATAAGTGGGATGAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: LCPANNFSSFKS*CGAANISGMSH Trigger: GTGGCTCATCCCACTTATGTTTGCTGCTCCACACAAAGATTTAAATGATGAGAAATTATTGGCTGGACACAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| CDS-3UTR CCA 90 bp | AATTTCTCATCATTTAAATCTTTGTGTGGAGCAGCAAACATAAGTGGGATGAGCAAGCAGTACAACTGTTaGACAAGGAATTCCAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: NFSSFKSLCGAANISGMSKQYNC*TRNSSL Trigger: AAGGCTGGAATTCCTTGTCCAACAGTTGTACTGCTT...GCTCATCCCACTTATGTTTGCTGCTCCACACAAAGATTTAAATGATGAGAAATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
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| 3UTR CAA 72 bp | TGTGAAAATCCTCATCTAGACACTTCAGATCATGAGTaGTATAAAATCCAGACTCCTGTGGCTACACATCTA | + |
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Preference number: 4 (lower is better) Translates to: CENPHLDTSDHE*YKIQTPVATHL Trigger: TAGATGTGTAGCCACAGGAGTCTGGATTTTATACAACTCATGATCTGAAGTGTCTAGATGAGGATTTTCACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| CDS-3UTR TCA 90 bp | CTCCACTTACTTTGTTCTAGTTCTCTCCAAATGATTAGCAATCAATATGTGAACTTTCTGGAAGAACTGTaGAACATTCCTACAGTCACG | + |
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Preference number: 4 (lower is better) Translates to: LHLLCSSSLQMISNQYVNFLEEL*NIPTVT Trigger: CGTGACTGTAGGAATGTTTCACAGTTCTTCCAGAAA...GTTCACATATTGATTGCTAATCATTTGGAGAGAACTAGAACAAAGTAAGTGGAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
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| CDS-3UTR GCA 90 bp | GAACAGCTCCACTTACTTTGTTCTAGTTCTCTCCAAATGATTAGCAATCAATATCTCACGCCTAAGCTGTaGATCATATTCTCTGTCAAA | + |
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Preference number: 4 (lower is better) Translates to: EQLHLLCSSSLQMISNQYLTPKL*IIFSVK Trigger: TTTGACAGAGAATATGATGCACAGCTTAGGCGTGAG...ATATTGATTGCTAATCATTTGGAGAGAACTAGAACAAAGTAAGTGGAGCTGTTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| CDS-3UTR CCA 90 bp | AATTTCTCATCATTTAAATCTTTGTGTGGAGCAGCAAACATAAGTGGGATGAGCGTTACTCCTCCTTTCTaGAAGAACTGTGAAACATTC | + |
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Preference number: 4 (lower is better) Translates to: NFSSFKSLCGAANISGMSVTPPF*KNCETF Trigger: GAATGTTTCACAGTTCTTCCAGAAAGGAGGAGTAAC...GCTCATCCCACTTATGTTTGCTGCTCCACACAAAGATTTAAATGATGAGAAATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
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| 3UTR CAA 72 bp | TCTCTCCAAATGATTAGCAATCAATATGTGAACAATTaGGGGAAACGTAAACGGAAATGTTTCACTGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: SLQMISNQYVNN*GKRKRKCFTAF Trigger: GAAGGCAGTGAAACATTTCCGTTTACGTTTCCCCAAATTGTTCACATATTGATTGCTAATCATTTGGAGAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| CDS-3UTR CAA 90 bp | AATGGAGCAGAGCGCAGCCATCGAGCCTCCCCTGCAAACACCTCAGTCCCCACCACTTTGCTATCACCATaGAACTTCTTTTCCTCACGC | + |
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Preference number: 5 (lower is better) Translates to: NGAERSHRASPANTSVPTTLLSP*NFFSSR Trigger: GCGTGAGGAAAAGAAGTTCAATGGTGATAGCAAAGT...GGTGGGGACTGAGGTGTTTGCAGGGGAGGCTCGATGGCTGCGCTCTGCTCCATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| CDS-3UTR CAA 90 bp | TCCACCCAAAGACGCAAGGGAAAGCAGGAGGCGAGCGGAATGGAGCAGAGCGCAACTTTGCTATCACCATaGAACTTCTTTTCCTCACGC | + |
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Preference number: 5 (lower is better) Translates to: STQRRKGKQEASGMEQSATLLSP*NFFSSR Trigger: GCGTGAGGAAAAGAAGTTCAATGGTGATAGCAAAGT...TGCGCTCTGCTCCATTCCGCTCGCCTCCTGCTTTCCCTTGCGTCTTTGGGTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| CDS-3UTR CAA 90 bp | CAGAGCGCAGCCATCGAGCCTCCCCTGCAAACACCTCAGTCCCCACCTCCCACAAACGAAATGGAAACTTaGCTATCACCATTGAACTTC | + |
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Preference number: 5 (lower is better) Translates to: QSAAIEPPLQTPQSPPPTNEMET*LSPLNF Trigger: GAAGTTCAATGGTGATAGCAAAGTTTCCATTTCGTT...TGTGGGAGGTGGGGACTGAGGTGTTTGCAGGGGAGGCTCGATGGCTGCGCTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| CDS TCA 90 bp | CAACTGCAGCTCTTTAGCCAGCTCCTCACTCATCACCTCGGTCAGTaGACAGGATACTGTGTTTTGAGGGGTAGCCCATGGGCACTTACT | + |
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Preference number: 5 (lower is better) Translates to: QLQLFSQLLTHHLGQ*TGYCVLRGSPWALT Trigger: AGTAAGTGCCCATGGGCTACCCCTCAAAACACAGTATCCTGTTCACTGACCGAGGTGATGAGTGAGGAGCTGGCTAAAGAGCTGCAGTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| CDS-3UTR CAA 90 bp | ACATCTGGCACGTGGGTCACAAGTGAGAAGCCCAGAAGCAGCACTGTCCACTCCACTACTTCATCATGCTaGGTGGTGATGTCTTTTCCT | + |
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Preference number: 5 (lower is better) Translates to: TSGTWVTSEKPRSSTVHSTTSSC*VVMSFP Trigger: AGGAAAAGACATCACCACCAAGCATGATGAAGTAGT...GGAGTGGACAGTGCTGCTTCTGGGCTTCTCACTTGTGACCCACGTGCCAGATGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| CDS-3UTR CAA 90 bp | AGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTGCTGTCATCTCTCCAGCTCGCCAATAAAACCCTTTTaGGGAGTAGGAATTGGCTTT | + |
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Preference number: 5 (lower is better) Translates to: RTSGRAVSALNCCHLSSSPIKPF*GVGIGF Trigger: AAAGCCAATTCCTACTCCCAAAAAGGGTTTTATTGG...CGAGCTGGAGAGATGACAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025270.8 |
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| CDS GCA 90 bp | TCGCTGAGGTCAGCATGCACAAGGGTACATTCGTTATATAATTGCTaGATCAAAGCGGTAGAATGTTCCTTCTTCTCGTGTAGACGGGCA | + |
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Preference number: 5 (lower is better) Translates to: SLRSACTRVHSLYNC*IKAVECSFFSCRRA Trigger: TGCCCGTCTACACGAGAAGAAGGAACATTCTACCGCTTTGATGCAGCAATTATATAACGAATGTACCCTTGTGCATGCTGACCTCAGCGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234985.2 |
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| CDS GCA 90 bp | TACTCGCTGAGGTCAGCATGCACAAGGGTACATTCGTTATATAATTaGTGCATCAAAGCGGTAGAATGTTCCTTCTTCTCGTGTAGACGG | + |
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Preference number: 5 (lower is better) Translates to: YSLRSACTRVHSLYN*CIKAVECSFFSCRR Trigger: CCGTCTACACGAGAAGAAGGAACATTCTACCGCTTTGATGCAGCAATTATATAACGAATGTACCCTTGTGCATGCTGACCTCAGCGAGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234985.2 |
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| CDS-3UTR CAA 90 bp | AAAAATTGCACACATCTGGCACGTGGGTCACAAGTGAGAAGCCCAGAAGCAGCAAACGAAATGGAAACTTaGCTATCACCATTGAACTTC | + |
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Preference number: 5 (lower is better) Translates to: KNCTHLARGSQVRSPEAANEMET*LSPLNF Trigger: GAAGTTCAATGGTGATAGCAAAGTTTCCATTTCGTT...TGCTGCTTCTGGGCTTCTCACTTGTGACCCACGTGCCAGATGTGTGCAATTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| CDS-3UTR CAA 90 bp | TTCAGGCTGTGTCTTCCACTTACTGAACAGCTCCACTTACTTTGTTCTAGTTCTACTACTTCATCATGCTaGGTGGTGATGTCTTTTCCT | + |
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Preference number: 5 (lower is better) Translates to: FRLCLPLTEQLHLLCSSSTTSSC*VVMSFP Trigger: AGGAAAAGACATCACCACCAAGCATGATGAAGTAGT...AGAACTAGAACAAAGTAAGTGGAGCTGTTCAGTAAGTGGAAGACACAGCCTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| CDS TCA 72 bp | CTCTTTAGCCAGCTCCTCACTCATCACCTCGGTCAGTaGACAGGATACTGTGTTTTGAGGGGTAGCCCATGG | + |
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Preference number: 6 (lower is better) Translates to: LFSQLLTHHLGQ*TGYCVLRGSPW Trigger: CCATGGGCTACCCCTCAAAACACAGTATCCTGTTCACTGACCGAGGTGATGAGTGAGGAGCTGGCTAAAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025270.8 ENSMUST00000234148.2 |
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| CDS GCA 72 bp | AGGTCAGCATGCACAAGGGTACATTCGTTATATAATTaGTGCATCAAAGCGGTAGAATGTTCCTTCTTCTCG | + |
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Preference number: 6 (lower is better) Translates to: RSACTRVHSLYN*CIKAVECSFFS Trigger: CGAGAAGAAGGAACATTCTACCGCTTTGATGCAGCAATTATATAACGAATGTACCCTTGTGCATGCTGACCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234985.2 |
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| CDS GCA 72 bp | TCAGCATGCACAAGGGTACATTCGTTATATAATTGCTaGATCAAAGCGGTAGAATGTTCCTTCTTCTCGTGT | + |
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Preference number: 6 (lower is better) Translates to: SACTRVHSLYNC*IKAVECSFFSC Trigger: ACACGAGAAGAAGGAACATTCTACCGCTTTGATGCAGCAATTATATAACGAATGTACCCTTGTGCATGCTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234985.2 |
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