Pregenerated sensors for RIOK2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000116564Ensembl transcript IDs: ENSMUST00000024620.8, ENSMUST00000232199.2, ENSMUST00000232396.2
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CATGTCACTGCTGGCAAACACTGCCATCTGGTGGTCACTTCTTGCTaGAGACGATCTTCTATTCGAGATCTGCTCAGGGAAGCTGAAGGG | + |
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Preference number: 1 (lower is better) Translates to: HVTAGKHCHLVVTSC*RRSSIRDLLREAEG Trigger: CCCTTCAGCTTCCCTGAGCAGATCTCGAATAGAAGATCGTCTTCAGCAAGAAGTGACCACCAGATGGCAGTGTTTGCCAGCAGTGACATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| 3UTR CCA 90 bp | GAAGCTGGTGTTTTTATCATGTCACTGCTGGCAAACACTGCCATCTaGTGGTCACTTCTTGCTGAAGACGATCTTCTATTCGAGATCTGC | + |
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Preference number: 1 (lower is better) Translates to: EAGVFIMSLLANTAI*WSLLAEDDLLFEIC Trigger: GCAGATCTCGAATAGAAGATCGTCTTCAGCAAGAAGTGACCACCAGATGGCAGTGTTTGCCAGCAGTGACATGATAAAAACACCAGCTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| 3UTR CCA 90 bp | TTTGCTAAGGTAAAAGGGAAGCTGGTGTTTTTATCATGTCACTGCTaGCAAACACTGCCATCTGGTGGTCACTTCTTGCTGAAGACGATC | + |
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Preference number: 1 (lower is better) Translates to: FAKVKGKLVFLSCHC*QTLPSGGHFLLKTI Trigger: GATCGTCTTCAGCAAGAAGTGACCACCAGATGGCAGTGTTTGCCAGCAGTGACATGATAAAAACACCAGCTTCCCTTTTACCTTAGCAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| 3UTR TCA 90 bp | CTAAAGCCAACTCACCAATGTAGTAAAAGCCCAAGTGTGACCGACTaGAGGAGAAAAGAGAGAACTACAGATTGCATTAAGTTGTTCTAT | + |
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Preference number: 1 (lower is better) Translates to: LKPTHQCSKSPSVTD*RRKERTTDCIKLFY Trigger: ATAGAACAACTTAATGCAATCTGTAGTTCTCTCTTTTCTCCTTCAGTCGGTCACACTTGGGCTTTTACTACATTGGTGAGTTGGCTTTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| 3UTR-3UTR TCA 90 bp | CTGCTCAGGGAAGCTGAAGGGACAGTGCTTGTATACTTACACTCACTTCCACTGCCAAGTGTGACCGACTaGAGGAGAAAAGAGAGAACT | + |
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Preference number: 2 (lower is better) Translates to: LLREAEGTVLVYLHSLPLPSVTD*RRKERT Trigger: AGTTCTCTCTTTTCTCCTTCAGTCGGTCACACTTGG...CAGTGGAAGTGAGTGTAAGTATACAAGCACTGTCCCTTCAGCTTCCCTGAGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| 3UTR-3UTR TCA 90 bp | ATTCGAGATCTGCTCAGGGAAGCTGAAGGGACAGTGCTTGTATACTTACACTCAAAACCTGGGGAAAGCTaGCAACTGCAAAAATACTGG | + |
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Preference number: 2 (lower is better) Translates to: IRDLLREAEGTVLVYLHSKPGES*QLQKYW Trigger: CCAGTATTTTTGCAGTTGTCAGCTTTCCCCAGGTTT...TGAGTGTAAGTATACAAGCACTGTCCCTTCAGCTTCCCTGAGCAGATCTCGAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| 3UTR-3UTR GCA 90 bp | ATTCGAGATCTGCTCAGGGAAGCTGAAGGGACAGTGCTTGTATACTTACACTCAGGGAAAGCTGACAACTaGAAAAATACTGGTAGGAAC | + |
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Preference number: 2 (lower is better) Translates to: IRDLLREAEGTVLVYLHSGKADN*KNTGRN Trigger: GTTCCTACCAGTATTTTTGCAGTTGTCAGCTTTCCC...TGAGTGTAAGTATACAAGCACTGTCCCTTCAGCTTCCCTGAGCAGATCTCGAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| 3UTR-3UTR CCA 90 bp | CTGCTCAGGGAAGCTGAAGGGACAGTGCTTGTATACTTACACTCACTTCCACTGTCAGTTTCACTCCAATaGTCAAATAACTGTGTACTG | + |
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Preference number: 2 (lower is better) Translates to: LLREAEGTVLVYLHSLPLSVSLQ*SNNCVL Trigger: CAGTACACAGTTATTTGACCATTGGAGTGAAACTGA...CAGTGGAAGTGAGTGTAAGTATACAAGCACTGTCCCTTCAGCTTCCCTGAGCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| 3UTR-3UTR TCA 90 bp | ATTCGAGATCTGCTCAGGGAAGCTGAAGGGACAGTGCTTGTATACTTACACTCATGTAAATCCAGAATCTaGGGCAAGTCATTTTTCTAC | + |
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Preference number: 2 (lower is better) Translates to: IRDLLREAEGTVLVYLHSCKSRI*GKSFFY Trigger: GTAGAAAAATGACTTGCCTCAGATTCTGGATTTACA...TGAGTGTAAGTATACAAGCACTGTCCCTTCAGCTTCCCTGAGCAGATCTCGAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| 3UTR TCA 72 bp | AACCTAAACTTCCTTTTCCCACGACCACAGGGCCAATaGGAACGGCACCAAAAGACCCGCTGCTGCTCGTCT | + |
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Preference number: 3 (lower is better) Translates to: NLNFLFPRPQGQ*ERHQKTRCCSS Trigger: AGACGAGCAGCAGCGGGTCTTTTGGTGCCGTTCTCATTGGCCCTGTGGTCGTGGGAAAAGGAAGTTTAGGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| 3UTR GCA 72 bp | TCACTTCTTGCTGAAGACGATCTTCTATTCGAGATCTaGTCAGGGAAGCTGAAGGGACAGTGCTTGTATACT | + |
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Preference number: 3 (lower is better) Translates to: SLLAEDDLLFEI*SGKLKGQCLYT Trigger: AGTATACAAGCACTGTCCCTTCAGCTTCCCTGAGCAGATCTCGAATAGAAGATCGTCTTCAGCAAGAAGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| 3UTR-3UTR CAA 90 bp | GCCATCTGGTGGTCACTTCTTGCTGAAGACGATCTTCTATTCGAGATCTGCTCAACTATTAATCAGACCTaGGAAGCTCTGAGTCTAAAG | + |
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Preference number: 3 (lower is better) Translates to: AIWWSLLAEDDLLFEICSTINQT*EALSLK Trigger: CTTTAGACTCAGAGCTTCCAAGGTCTGATTAATAGT...TGAGCAGATCTCGAATAGAAGATCGTCTTCAGCAAGAAGTGACCACCAGATGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| 3UTR TCA 72 bp | GATCAGTTTCACTCCAATGGTCAAATAACTGTGTACTaGCTGTCTCAGGTGATCCTAAAGCCAACTCACCAA | + |
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Preference number: 3 (lower is better) Translates to: DQFHSNGQITVY*LSQVILKPTHQ Trigger: TTGGTGAGTTGGCTTTAGGATCACCTGAGACAGTCAGTACACAGTTATTTGACCATTGGAGTGAAACTGATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| 3UTR-3UTR CAA 90 bp | ATTCGAGATCTGCTCAGGGAAGCTGAAGGGACAGTGCTTGTATACTTACACTCAAATGATGTCCATGTTTaGCAATTACTGCCAATGAAG | + |
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Preference number: 3 (lower is better) Translates to: IRDLLREAEGTVLVYLHSNDVHV*QLLPMK Trigger: CTTCATTGGCAGTAATTGCAAAACATGGACATCATT...TGAGTGTAAGTATACAAGCACTGTCCCTTCAGCTTCCCTGAGCAGATCTCGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| 3UTR-3UTR CAA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGTTCAAATATCCTCCCTaGACAGAATCAAAGATCTCA | + |
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Preference number: 3 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGFKYPP*TESKIS Trigger: TGAGATCTTTGATTCTGTCAAGGGAGGATATTTGAA...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR CCA 90 bp | CTGCTCAGGGAAGCTGAAGGGACAGTGCTTGTATACTTACACTCACTTCCACTGTCTGCAGCCGGCGTCTaGCAGCCGCCTTCTGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: LLREAEGTVLVYLHSLPLSAAGV*QPPSAA Trigger: GGCAGCAGAAGGCGGCTGCCAGACGCCGGCTGCAGA...CAGTGGAAGTGAGTGTAAGTATACAAGCACTGTCCCTTCAGCTTCCCTGAGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR GCA 90 bp | ATTCGAGATCTGCTCAGGGAAGCTGAAGGGACAGTGCTTGTATACTTACACTCATCTGTGGAGCTTCAGTaGGAGCTGCTGCCCGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: IRDLLREAEGTVLVYLHSSVELQ*ELLPGF Trigger: GAAGCCGGGCAGCAGCTCGCACTGAAGCTCCACAGA...TGAGTGTAAGTATACAAGCACTGTCCCTTCAGCTTCCCTGAGCAGATCTCGAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CCA 90 bp | GCCATCTGGTGGTCACTTCTTGCTGAAGACGATCTTCTATTCGAGATCTGCTCATCAGTAACCGACCTGTaGGGAAGAACCTGCCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: AIWWSLLAEDDLLFEICSSVTDL*GRTCLS Trigger: GGAAAGGCAGGTTCTTCCCCACAGGTCGGTTACTGA...TGAGCAGATCTCGAATAGAAGATCGTCTTCAGCAAGAAGTGACCACCAGATGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR TCA 90 bp | ATTCGAGATCTGCTCAGGGAAGCTGAAGGGACAGTGCTTGTATACTTACACTCATCGAAACTGGACACATaGGCACTCTCCTCTGGTAAG | + |
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Preference number: 4 (lower is better) Translates to: IRDLLREAEGTVLVYLHSSKLDT*ALSSGK Trigger: CTTACCAGAGGAGAGTGCTCATGTGTCCAGTTTCGA...TGAGTGTAAGTATACAAGCACTGTCCCTTCAGCTTCCCTGAGCAGATCTCGAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR GCA 90 bp | GCCATCTGGTGGTCACTTCTTGCTGAAGACGATCTTCTATTCGAGATCTGCTCACTGTGGGGAAGAACCTaGCTTTCCATCTCTTCTACA | + |
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Preference number: 4 (lower is better) Translates to: AIWWSLLAEDDLLFEICSLWGRT*LSISST Trigger: TGTAGAAGAGATGGAAAGGCAGGTTCTTCCCCACAG...TGAGCAGATCTCGAATAGAAGATCGTCTTCAGCAAGAAGTGACCACCAGATGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CCA 90 bp | GCCATCTGGTGGTCACTTCTTGCTGAAGACGATCTTCTATTCGAGATCTGCTCAGCTGCCCGGCTTCATTaGCAACAATGTAAATGTCTG | + |
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Preference number: 4 (lower is better) Translates to: AIWWSLLAEDDLLFEICSAARLH*QQCKCL Trigger: CAGACATTTACATTGTTGCCAATGAAGCCGGGCAGC...TGAGCAGATCTCGAATAGAAGATCGTCTTCAGCAAGAAGTGACCACCAGATGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR TCA 90 bp | CTGCTCAGGGAAGCTGAAGGGACAGTGCTTGTATACTTACACTCACTTCCACTGTTCCTTTTCCAATTCTaGCCTCCACACTTTGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: LLREAEGTVLVYLHSLPLFLFQF*PPHFGF Trigger: AAAGCCAAAGTGTGGAGGTCAGAATTGGAAAAGGAA...CAGTGGAAGTGAGTGTAAGTATACAAGCACTGTCCCTTCAGCTTCCCTGAGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR GCA 90 bp | GCCATCTGGTGGTCACTTCTTGCTGAAGACGATCTTCTATTCGAGATCTGCTCAAAATGTCTGACTCTTTaGCCACACCCATCTGGTTTC | + |
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Preference number: 4 (lower is better) Translates to: AIWWSLLAEDDLLFEICSKCLTL*PHPSGF Trigger: GAAACCAGATGGGTGTGGGCAAAGAGTCAGACATTT...TGAGCAGATCTCGAATAGAAGATCGTCTTCAGCAAGAAGTGACCACCAGATGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR TCA 90 bp | ATTCGAGATCTGCTCAGGGAAGCTGAAGGGACAGTGCTTGTATACTTACACTCACTTCATCAGAAAACGTaGAGTCAGAGTCCTCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: IRDLLREAEGTVLVYLHSLHQKT*SQSPLL Trigger: CAGAAGAGGACTCTGACTTCACGTTTTCTGATGAAG...TGAGTGTAAGTATACAAGCACTGTCCCTTCAGCTTCCCTGAGCAGATCTCGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CCA 90 bp | GTAAATCCAGAATCTGAGGCAAGTCATTTTTCTACCTGTTTAAGGCAGAGTCTGAGGGCTTCTCTGACCTaGCTGCCCATCATTTTCAGT | + |
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Preference number: 4 (lower is better) Translates to: VNPESEASHFSTCLRQSLRASLT*LPIIFS Trigger: ACTGAAAATGATGGGCAGCCAGGTCAGAGAAGCCCT...CAGACTCTGCCTTAAACAGGTAGAAAAATGACTTGCCTCAGATTCTGGATTTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR GCA 90 bp | GCCATCTGGTGGTCACTTCTTGCTGAAGACGATCTTCTATTCGAGATCTGCTCAAAGCTCCATGATCACTaGATGGCGATTATAATCAAT | + |
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Preference number: 4 (lower is better) Translates to: AIWWSLLAEDDLLFEICSKLHDH*MAIIIN Trigger: ATTGATTATAATCGCCATGCAGTGATCATGGAGCTT...TGAGCAGATCTCGAATAGAAGATCGTCTTCAGCAAGAAGTGACCACCAGATGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CCA 90 bp | GTAAATCCAGAATCTGAGGCAAGTCATTTTTCTACCTGTTTAAGGCAGAGTCTGCATTCAGCATTTGGGTaGGATGTGGAAACCATCTGC | + |
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Preference number: 4 (lower is better) Translates to: VNPESEASHFSTCLRQSLHSAFG*DVETIC Trigger: GCAGATGGTTTCCACATCCCACCCAAATGCTGAATG...CAGACTCTGCCTTAAACAGGTAGAAAAATGACTTGCCTCAGATTCTGGATTTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CCA 90 bp | GCCATCTGGTGGTCACTTCTTGCTGAAGACGATCTTCTATTCGAGATCTGCTCACTGACCTCCACACTTTaGCTTTTTCTAACATTTCTT | + |
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Preference number: 4 (lower is better) Translates to: AIWWSLLAEDDLLFEICSLTSTL*LFLTFL Trigger: AAGAAATGTTAGAAAAAGCCAAAGTGTGGAGGTCAG...TGAGCAGATCTCGAATAGAAGATCGTCTTCAGCAAGAAGTGACCACCAGATGGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CCA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGTCAGTAACCGACCTGTaGGGAAGAACCTGCCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGSVTDL*GRTCLS Trigger: GGAAAGGCAGGTTCTTCCCCACAGGTCGGTTACTGA...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR TCA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGTCGAAACTGGACACATaGGCACTCTCCTCTGGTAAG | + |
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Preference number: 4 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGSKLDT*ALSSGK Trigger: CTTACCAGAGGAGAGTGCTCATGTGTCCAGTTTCGA...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR GCA 90 bp | GTAAATCCAGAATCTGAGGCAAGTCATTTTTCTACCTGTTTAAGGCAGAGTCTGCATTTTCAGTTCTCCTaGTCTCCTCAGAGAACTCAG | + |
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Preference number: 4 (lower is better) Translates to: VNPESEASHFSTCLRQSLHFQFS*SPQRTQ Trigger: CTGAGTTCTCTGAGGAGAGCAGGAGAACTGAAAATG...CAGACTCTGCCTTAAACAGGTAGAAAAATGACTTGCCTCAGATTCTGGATTTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CCA 90 bp | GTAAATCCAGAATCTGAGGCAAGTCATTTTTCTACCTGTTTAAGGCAGAGTCTGTTGCCCACACCCATCTaGTTTCCAACAGATTCAACT | + |
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Preference number: 4 (lower is better) Translates to: VNPESEASHFSTCLRQSLLPTPI*FPTDST Trigger: AGTTGAATCTGTTGGAAACCAGATGGGTGTGGGCAA...CAGACTCTGCCTTAAACAGGTAGAAAAATGACTTGCCTCAGATTCTGGATTTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CCA 90 bp | GGCAAGTCATTTTTCTACCTGTTTAAGGCAGAGTCTGAACATCACAGTGAAATAAGGCAAATTCCTTCATaGCCGAGAGCCGAGATAAGT | + |
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Preference number: 4 (lower is better) Translates to: GKSFFYLFKAESEHHSEIRQIPS*PRAEIS Trigger: ACTTATCTCGGCTCTCGGCCATGAAGGAATTTGCCT...TATTTCACTGTGATGTTCAGACTCTGCCTTAAACAGGTAGAAAAATGACTTGCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CCA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGAGGGCTTCTCTGACCTaGCTGCCCATCATTTTCAGT | + |
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Preference number: 4 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGRASLT*LPIIFS Trigger: ACTGAAAATGATGGGCAGCCAGGTCAGAGAAGCCCT...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR TCA 90 bp | GTAAATCCAGAATCTGAGGCAAGTCATTTTTCTACCTGTTTAAGGCAGAGTCTGTCATTGAAATCTCCATaGATCAGTCCATGGTTTCCC | + |
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Preference number: 4 (lower is better) Translates to: VNPESEASHFSTCLRQSLSLKSP*ISPWFP Trigger: GGGAAACCATGGACTGATTCATGGAGATTTCAATGA...CAGACTCTGCCTTAAACAGGTAGAAAAATGACTTGCCTCAGATTCTGGATTTAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR GCA 90 bp | GTAAATCCAGAATCTGAGGCAAGTCATTTTTCTACCTGTTTAAGGCAGAGTCTGTCTCATGGTTTTTCATaGCCATTTCAACCGCAGTCA | + |
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Preference number: 4 (lower is better) Translates to: VNPESEASHFSTCLRQSLSHGFS*PFQPQS Trigger: TGACTGCGGTTGAAATGGGCATGAAAAACCATGAGA...CAGACTCTGCCTTAAACAGGTAGAAAAATGACTTGCCTCAGATTCTGGATTTAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR GCA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGCTGTGGGGAAGAACCTaGCTTTCCATCTCTTCTACA | + |
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Preference number: 4 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGLWGRT*LSISST Trigger: TGTAGAAGAGATGGAAAGGCAGGTTCTTCCCCACAG...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR GCA 90 bp | GTAAATCCAGAATCTGAGGCAAGTCATTTTTCTACCTGTTTAAGGCAGAGTCTGCTCGATTTAATATTCTaGATGTTTTCCCTCCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: VNPESEASHFSTCLRQSLLDLIF*MFSLRC Trigger: GCAGCGGAGGGAAAACATGCAGAATATTAAATCGAG...CAGACTCTGCCTTAAACAGGTAGAAAAATGACTTGCCTCAGATTCTGGATTTAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CCA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGAGGCAAATTCCTTCATaGCCGAGAGCCGAGATAAGT | + |
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Preference number: 4 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGRQIPS*PRAEIS Trigger: ACTTATCTCGGCTCTCGGCCATGAAGGAATTTGCCT...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR CCA 90 bp | GGCAAGTCATTTTTCTACCTGTTTAAGGCAGAGTCTGAACATCACAGTGAAATACATTTGGGTGGGATGTaGAAACCATCTGCGGAAAAT | + |
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Preference number: 4 (lower is better) Translates to: GKSFFYLFKAESEHHSEIHLGGM*KPSAEN Trigger: ATTTTCCGCAGATGGTTTCCACATCCCACCCAAATG...TATTTCACTGTGATGTTCAGACTCTGCCTTAAACAGGTAGAAAAATGACTTGCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CCA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGCATTCAGCATTTGGGTaGGATGTGGAAACCATCTGC | + |
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Preference number: 4 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGHSAFG*DVETIC Trigger: GCAGATGGTTTCCACATCCCACCCAAATGCTGAATG...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR TCA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGCTTCATCAGAAAACGTaGAGTCAGAGTCCTCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGLHQKT*SQSPLL Trigger: CAGAAGAGGACTCTGACTTCACGTTTTCTGATGAAG...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR GCA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGAAATGTCTGACTCTTTaGCCACACCCATCTGGTTTC | + |
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Preference number: 4 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGKCLTL*PHPSGF Trigger: GAAACCAGATGGGTGTGGGCAAAGAGTCAGACATTT...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR GCA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGCATTTTCAGTTCTCCTaGTCTCCTCAGAGAACTCAG | + |
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Preference number: 4 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGHFQFS*SPQRTQ Trigger: CTGAGTTCTCTGAGGAGAGCAGGAGAACTGAAAATG...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR CCA 90 bp | GTAAATCCAGAATCTGAGGCAAGTCATTTTTCTACCTGTTTAAGGCAGAGTCTGCAGGGAACAATCTCATaGTTTTTCATGCCCATTTCA | + |
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Preference number: 4 (lower is better) Translates to: VNPESEASHFSTCLRQSLQGTIS*FFMPIS Trigger: TGAAATGGGCATGAAAAACCATGAGATTGTTCCCTG...CAGACTCTGCCTTAAACAGGTAGAAAAATGACTTGCCTCAGATTCTGGATTTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CCA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGTTGCCCACACCCATCTaGTTTCCAACAGATTCAACT | + |
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Preference number: 4 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGLPTPI*FPTDST Trigger: AGTTGAATCTGTTGGAAACCAGATGGGTGTGGGCAA...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR CCA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGCATTTGGGTGGGATGTaGAAACCATCTGCGGAAAAT | + |
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Preference number: 4 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGHLGGM*KPSAEN Trigger: ATTTTCCGCAGATGGTTTCCACATCCCACCCAAATG...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR TCA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGTCATTGAAATCTCCATaGATCAGTCCATGGTTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGSLKSP*ISPWFP Trigger: GGGAAACCATGGACTGATTCATGGAGATTTCAATGA...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR GCA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGTCTCATGGTTTTTCATaGCCATTTCAACCGCAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGSHGFS*PFQPQS Trigger: TGACTGCGGTTGAAATGGGCATGAAAAACCATGAGA...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR CCA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGCAGGGAACAATCTCATaGTTTTTCATGCCCATTTCA | + |
|
Preference number: 4 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGQGTIS*FFMPIS Trigger: TGAAATGGGCATGAAAAACCATGAGATTGTTCCCTG...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR GCA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGAAGCTCCATGATCACTaGATGGCGATTATAATCAAT | + |
|
Preference number: 4 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGKLHDH*MAIIIN Trigger: ATTGATTATAATCGCCATGCAGTGATCATGGAGCTT...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR CCA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGCTGACCTCCACACTTTaGCTTTTTCTAACATTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGLTSTL*LFLTFL Trigger: AAGAAATGTTAGAAAAAGCCAAAGTGTGGAGGTCAG...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR CAA 90 bp | GCCATCTGGTGGTCACTTCTTGCTGAAGACGATCTTCTATTCGAGATCTGCTCAGTTCTGGAGGGATTGTaGAACAGCTTAGGGCACTGC | + |
|
Preference number: 5 (lower is better) Translates to: AIWWSLLAEDDLLFEICSVLEGL*NSLGHC Trigger: GCAGTGCCCTAAGCTGTTCAACAATCCCTCCAGAAC...TGAGCAGATCTCGAATAGAAGATCGTCTTCAGCAAGAAGTGACCACCAGATGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CAA 90 bp | CTGCTCAGGGAAGCTGAAGGGACAGTGCTTGTATACTTACACTCACTTCCACTGAATCATAGCCAGCATTaGTCAACCGATAGCCCTGCA | + |
|
Preference number: 5 (lower is better) Translates to: LLREAEGTVLVYLHSLPLNHSQH*STDSPA Trigger: TGCAGGGCTATCGGTTGACAAATGCTGGCTATGATT...CAGTGGAAGTGAGTGTAAGTATACAAGCACTGTCCCTTCAGCTTCCCTGAGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS TCA 90 bp | TCTTCTACAGCTTGGCTTAATGCCGTCACTTCGAAACTGGACACATaGGCACTCTCCTCTGGTAAGCCGCCATCCTTTATTTGTTTGCTG | + |
|
Preference number: 5 (lower is better) Translates to: SSTAWLNAVTSKLDT*ALSSGKPPSFICLL Trigger: CAGCAAACAAATAAAGGATGGCGGCTTACCAGAGGAGAGTGCTCATGTGTCCAGTTTCGAAGTGACGGCATTAAGCCAAGCTGTAGAAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024620.8 ENSMUST00000232396.2 |
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| CDS CCA 90 bp | TTTTCAGTTCTCCTGCTCTCCTCAGAGAACTCAGTAACCGACCTGTaGGGAAGAACCTGCCTTTCCATCTCTTCTACAGCTTGGCTTAAT | + |
|
Preference number: 5 (lower is better) Translates to: FSVLLLSSENSVTDL*GRTCLSISSTAWLN Trigger: ATTAAGCCAAGCTGTAGAAGAGATGGAAAGGCAGGTTCTTCCCCACAGGTCGGTTACTGAGTTCTCTGAGGAGAGCAGGAGAACTGAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024620.8 ENSMUST00000232396.2 |
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| CDS-3UTR CAA 90 bp | GCCATCTGGTGGTCACTTCTTGCTGAAGACGATCTTCTATTCGAGATCTGCTCATGCTTGGTAAACACATaGGCTTCTCCTTTCTGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: AIWWSLLAEDDLLFEICSCLVNT*ASPFCS Trigger: GCTGCAGAAAGGAGAAGCCAATGTGTTTACCAAGCA...TGAGCAGATCTCGAATAGAAGATCGTCTTCAGCAAGAAGTGACCACCAGATGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CAA 90 bp | GCCATCTGGTGGTCACTTCTTGCTGAAGACGATCTTCTATTCGAGATCTGCTCAAATACCATTCAGCATTaGGGTGGGATGTGGAAACCA | + |
|
Preference number: 5 (lower is better) Translates to: AIWWSLLAEDDLLFEICSNTIQH*GGMWKP Trigger: TGGTTTCCACATCCCACCCAAATGCTGAATGGTATT...TGAGCAGATCTCGAATAGAAGATCGTCTTCAGCAAGAAGTGACCACCAGATGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CAA 90 bp | CTGCTCAGGGAAGCTGAAGGGACAGTGCTTGTATACTTACACTCACTTCCACTGGTGATGTGGTCATCTTaGTCCAACATGAGATTGAAT | + |
|
Preference number: 5 (lower is better) Translates to: LLREAEGTVLVYLHSLPLVMWSS*SNMRLN Trigger: ATTCAATCTCATGTTGGACAAAGATGACCACATCAC...CAGTGGAAGTGAGTGTAAGTATACAAGCACTGTCCCTTCAGCTTCCCTGAGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CAA 90 bp | ATTCGAGATCTGCTCAGGGAAGCTGAAGGGACAGTGCTTGTATACTTACACTCACCATCCTTTATTTGTTaGCTGTCTGTAGACGAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: IRDLLREAEGTVLVYLHSPSFIC*LSVDEQ Trigger: CTGCTCGTCTACAGACAGCAAACAAATAAAGGATGG...TGAGTGTAAGTATACAAGCACTGTCCCTTCAGCTTCCCTGAGCAGATCTCGAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CAA 90 bp | GTAAATCCAGAATCTGAGGCAAGTCATTTTTCTACCTGTTTAAGGCAGAGTCTGCCAGTTCTGGAGGGATaGTTGAACAGCTTAGGGCAC | + |
|
Preference number: 5 (lower is better) Translates to: VNPESEASHFSTCLRQSLPVLEG*LNSLGH Trigger: GTGCCCTAAGCTGTTCAACAATCCCTCCAGAACTGG...CAGACTCTGCCTTAAACAGGTAGAAAAATGACTTGCCTCAGATTCTGGATTTAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS CCA 90 bp | TTCAGGCTGGCTATAGAAGCAATCAAACTGCAGGGAACAATCTCATaGTTTTTCATGCCCATTTCAACCGCAGTCAGAACTCTGAAGTCA | + |
|
Preference number: 5 (lower is better) Translates to: FRLAIEAIKLQGTIS*FFMPISTAVRTLKS Trigger: TGACTTCAGAGTTCTGACTGCGGTTGAAATGGGCATGAAAAACCATGAGATTGTTCCCTGCAGTTTGATTGCTTCTATAGCCAGCCTGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024620.8 ENSMUST00000232396.2 |
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| CDS-3UTR CAA 90 bp | ATTCGAGATCTGCTCAGGGAAGCTGAAGGGACAGTGCTTGTATACTTACACTCAGGCGATTATAATCAATaGGCTTTGGAACTGGAAATT | + |
|
Preference number: 5 (lower is better) Translates to: IRDLLREAEGTVLVYLHSGDYNQ*ALELEI Trigger: AATTTCCAGTTCCAAAGCCAATTGATTATAATCGCC...TGAGTGTAAGTATACAAGCACTGTCCCTTCAGCTTCCCTGAGCAGATCTCGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CAA 90 bp | GTAAATCCAGAATCTGAGGCAAGTCATTTTTCTACCTGTTTAAGGCAGAGTCTGCCATGGTTTCCCAGTTaGACTATCAGTTCCATAGCT | + |
|
Preference number: 5 (lower is better) Translates to: VNPESEASHFSTCLRQSLPWFPS*TISSIA Trigger: AGCTATGGAACTGATAGTCAAACTGGGAAACCATGG...CAGACTCTGCCTTAAACAGGTAGAAAAATGACTTGCCTCAGATTCTGGATTTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CAA 90 bp | GGCAAGTCATTTTTCTACCTGTTTAAGGCAGAGTCTGAACATCACAGTGAAATACTGCTTGCATTTCCTTaGTGTAACCACTGGCAGAGA | + |
|
Preference number: 5 (lower is better) Translates to: GKSFFYLFKAESEHHSEILLAFP*CNHWQR Trigger: TCTCTGCCAGTGGTTACACAAAGGAAATGCAAGCAG...TATTTCACTGTGATGTTCAGACTCTGCCTTAAACAGGTAGAAAAATGACTTGCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS CCA 90 bp | GAAATTTCCTCTCATATAATGCCTTCATATAGGCAAATTCCTTCATaGCCGAGAGCCGAGATAAGTAAAGCCAAGAAACATTGTGCCTGT | + |
|
Preference number: 5 (lower is better) Translates to: EISSHIMPSYRQIPS*PRAEISKAKKHCAC Trigger: ACAGGCACAATGTTTCTTGGCTTTACTTATCTCGGCTCTCGGCCATGAAGGAATTTGCCTATATGAAGGCATTATATGAGAGGAAATTTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024620.8 ENSMUST00000232396.2 |
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| CDS CCA 90 bp | GACCTCAACATCAAGAGAATCCTCCTTCCTGATATCACTGAAGGTTaGGTAGAGCTCACTTTCATAGCTAAAACGTTTCATGAAGAATTC | + |
|
Preference number: 5 (lower is better) Translates to: DLNIKRILLPDITEG*VELTFIAKTFHEEF Trigger: GAATTCTTCATGAAACGTTTTAGCTATGAAAGTGAGCTCTACCCAACCTTCAGTGATATCAGGAAGGAGGATTCTCTTGATGTTGAGGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024620.8 ENSMUST00000232396.2 |
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| CDS-3UTR CAA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGAATCATAGCCAGCATTaGTCAACCGATAGCCCTGCA | + |
|
Preference number: 5 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGNHSQH*STDSPA Trigger: TGCAGGGCTATCGGTTGACAAATGCTGGCTATGATT...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR CAA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGCTGCTTGCATTTCCTTaGTGTAACCACTGGCAGAGA | + |
|
Preference number: 5 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGLLAFP*CNHWQR Trigger: TCTCTGCCAGTGGTTACACAAAGGAAATGCAAGCAG...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR CAA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGAATACCATTCAGCATTaGGGTGGGATGTGGAAACCA | + |
|
Preference number: 5 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGNTIQH*GGMWKP Trigger: TGGTTTCCACATCCCACCCAAATGCTGAATGGTATT...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR CAA 90 bp | GGCAAGTCATTTTTCTACCTGTTTAAGGCAGAGTCTGAACATCACAGTGAAATACAGTTCATCATCTGCTaGCATTTCCTTTGTGTAACC | + |
|
Preference number: 5 (lower is better) Translates to: GKSFFYLFKAESEHHSEIQFIIC*HFLCVT Trigger: GGTTACACAAAGGAAATGCAAGCAGATGATGAACTG...TATTTCACTGTGATGTTCAGACTCTGCCTTAAACAGGTAGAAAAATGACTTGCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CAA 90 bp | GTAAATCCAGAATCTGAGGCAAGTCATTTTTCTACCTGTTTAAGGCAGAGTCTGTCTGACCTCCACACTTaGGCTTTTTCTAACATTTCT | + |
|
Preference number: 5 (lower is better) Translates to: VNPESEASHFSTCLRQSLSDLHT*AFSNIS Trigger: AGAAATGTTAGAAAAAGCCAAAGTGTGGAGGTCAGA...CAGACTCTGCCTTAAACAGGTAGAAAAATGACTTGCCTCAGATTCTGGATTTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS-3UTR CAA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGCCATCCTTTATTTGTTaGCTGTCTGTAGACGAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGPSFIC*LSVDEQ Trigger: CTGCTCGTCTACAGACAGCAAACAAATAAAGGATGG...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS TCA 90 bp | TGGTCATCTTTGTCCAACATGAGATTGAATTCATTGAAATCTCCATaGATCAGTCCATGGTTTCCCAGTTTGACTATCAGTTCCATAGCT | + |
|
Preference number: 5 (lower is better) Translates to: WSSLSNMRLNSLKSP*ISPWFPSLTISSIA Trigger: AGCTATGGAACTGATAGTCAAACTGGGAAACCATGGACTGATTCATGGAGATTTCAATGAATTCAATCTCATGTTGGACAAAGATGACCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024620.8 ENSMUST00000232199.2 ENSMUST00000232396.2 |
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| CDS-3UTR CAA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGCAGTTCATCATCTGCTaGCATTTCCTTTGTGTAACC | + |
|
Preference number: 5 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGQFIIC*HFLCVT Trigger: GGTTACACAAAGGAAATGCAAGCAGATGATGAACTG...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR CAA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGGTGATGTGGTCATCTTaGTCCAACATGAGATTGAAT | + |
|
Preference number: 5 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGVMWSS*SNMRLN Trigger: ATTCAATCTCATGTTGGACAAAGATGACCACATCAC...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR CAA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGTCTGACCTCCACACTTaGGCTTTTTCTAACATTTCT | + |
|
Preference number: 5 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGSDLHT*AFSNIS Trigger: AGAAATGTTAGAAAAAGCCAAAGTGTGGAGGTCAGA...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS-3UTR CAA 90 bp | TTAACTTTCATTTTTACACATGATAATGGCACGACACAATCTTGTCACAGTGGGGGCGATTATAATCAATaGGCTTTGGAACTGGAAATT | + |
|
Preference number: 5 (lower is better) Translates to: LTFIFTHDNGTTQSCHSGGDYNQ*ALELEI Trigger: AATTTCCAGTTCCAAAGCCAATTGATTATAATCGCC...CCCACTGTGACAAGATTGTGTCGTGCCATTATCATGTGTAAAAATGAAAGTTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000232396.2 |
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| CDS GCA 72 bp | CTCCGCTGCTTGGTAAACACATTGGCTTCTCCTTTCTaGAGCCGGCGTCTGGCAGCCGCCTTCTGCTGCCTT | + |
|
Preference number: 6 (lower is better) Translates to: LRCLVNTLASPF*SRRLAAAFCCL Trigger: AAGGCAGCAGAAGGCGGCTGCCAGACGCCGGCTGCAGAAAGGAGAAGCCAATGTGTTTACCAAGCAGCGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024620.8 |
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| CDS GCA 72 bp | TCGAAAGGAAGTTCTTCCGAGTCTGTGGAGCTTCAGTaGGAGCTGCTGCCCGGCTTCATTGGCAACAATGTA | + |
|
Preference number: 6 (lower is better) Translates to: SKGSSSESVELQ*ELLPGFIGNNV Trigger: TACATTGTTGCCAATGAAGCCGGGCAGCAGCTCGCACTGAAGCTCCACAGACTCGGAAGAACTTCCTTTCGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024620.8 ENSMUST00000232396.2 |
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| CDS CCA 72 bp | TGTGGAGCTTCAGTGCGAGCTGCTGCCCGGCTTCATTaGCAACAATGTAAATGTCTGACTCTTTGCCCACAC | + |
|
Preference number: 6 (lower is better) Translates to: CGASVRAAARLH*QQCKCLTLCPH Trigger: GTGTGGGCAAAGAGTCAGACATTTACATTGTTGCCAATGAAGCCGGGCAGCAGCTCGCACTGAAGCTCCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024620.8 ENSMUST00000232396.2 |
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| CDS CCA 72 bp | CTCCTGCTCTCCTCAGAGAACTCAGTAACCGACCTGTaGGGAAGAACCTGCCTTTCCATCTCTTCTACAGCT | + |
|
Preference number: 6 (lower is better) Translates to: LLLSSENSVTDL*GRTCLSISSTA Trigger: AGCTGTAGAAGAGATGGAAAGGCAGGTTCTTCCCCACAGGTCGGTTACTGAGTTCTCTGAGGAGAGCAGGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024620.8 ENSMUST00000232396.2 |
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| CDS GCA 72 bp | TCAGAGAACTCAGTAACCGACCTGTGGGGAAGAACCTaGCTTTCCATCTCTTCTACAGCTTGGCTTAATGCC | + |
|
Preference number: 6 (lower is better) Translates to: SENSVTDLWGRT*LSISSTAWLNA Trigger: GGCATTAAGCCAAGCTGTAGAAGAGATGGAAAGGCAGGTTCTTCCCCACAGGTCGGTTACTGAGTTCTCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024620.8 ENSMUST00000232396.2 |
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| CDS CCA 72 bp | TTTTTCAGATTTCGAAAGGAAGTTCTTCCGAGTCTGTaGAGCTTCAGTGCGAGCTGCTGCCCGGCTTCATTG | + |
|
Preference number: 6 (lower is better) Translates to: FFRFRKEVLPSL*SFSASCCPASL Trigger: CAATGAAGCCGGGCAGCAGCTCGCACTGAAGCTCCACAGACTCGGAAGAACTTCCTTTCGAAATCTGAAAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024620.8 ENSMUST00000232396.2 |
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| CDS CAA 90 bp | CTGGGCCTACTGGATGTAGCAGTTCATCATCTGCTTGCATTTCCTTaGTGTAACCACTGGCAGAGACCTCAACATCAAGAGAATCCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: LGLLDVAVHHLLAFP*CNHWQRPQHQENPP Trigger: AGGAGGATTCTCTTGATGTTGAGGTCTCTGCCAGTGGTTACACAAAGGAAATGCAAGCAGATGATGAACTGCTACATCCAGTAGGCCCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024620.8 ENSMUST00000232396.2 |
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| CDS GCA 72 bp | CGGCTTCATTGGCAACAATGTAAATGTCTGACTCTTTaGCCACACCCATCTGGTTTCCAACAGATTCAACTA | + |
|
Preference number: 6 (lower is better) Translates to: RLHWQQCKCLTL*PHPSGFQQIQL Trigger: TAGTTGAATCTGTTGGAAACCAGATGGGTGTGGGCAAAGAGTCAGACATTTACATTGTTGCCAATGAAGCCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024620.8 ENSMUST00000232396.2 |
||
| CDS CCA 72 bp | GCTATAGAAGCAATCAAACTGCAGGGAACAATCTCATaGTTTTTCATGCCCATTTCAACCGCAGTCAGAACT | + |
|
Preference number: 6 (lower is better) Translates to: AIEAIKLQGTIS*FFMPISTAVRT Trigger: AGTTCTGACTGCGGTTGAAATGGGCATGAAAAACCATGAGATTGTTCCCTGCAGTTTGATTGCTTCTATAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024620.8 ENSMUST00000232396.2 |
||
| CDS CCA 72 bp | TCTCATATAATGCCTTCATATAGGCAAATTCCTTCATaGCCGAGAGCCGAGATAAGTAAAGCCAAGAAACAT | + |
|
Preference number: 6 (lower is better) Translates to: SHIMPSYRQIPS*PRAEISKAKKH Trigger: ATGTTTCTTGGCTTTACTTATCTCGGCTCTCGGCCATGAAGGAATTTGCCTATATGAAGGCATTATATGAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024620.8 ENSMUST00000232396.2 |
||
| CDS TCA 72 bp | TTGTCCAACATGAGATTGAATTCATTGAAATCTCCATaGATCAGTCCATGGTTTCCCAGTTTGACTATCAGT | + |
|
Preference number: 6 (lower is better) Translates to: LSNMRLNSLKSP*ISPWFPSLTIS Trigger: ACTGATAGTCAAACTGGGAAACCATGGACTGATTCATGGAGATTTCAATGAATTCAATCTCATGTTGGACAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024620.8 ENSMUST00000232199.2 ENSMUST00000232396.2 |
||
| CDS GCA 72 bp | TGCACAGTTTTAGTACGTTCCCACGCTATAAGTTTATaGTTCACCAATTCTCTTAGAATCTTATTACAGCCA | + |
|
Preference number: 6 (lower is better) Translates to: CTVLVRSHAISL*FTNSLRILLQP Trigger: TGGCTGTAATAAGATTCTAAGAGAATTGGTGAAGCATAAACTTATAGCGTGGGAACGTACTAAAACTGTGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024620.8 ENSMUST00000232396.2 |
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