Pregenerated sensors for RING1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024325Ensembl transcript IDs: ENSMUST00000025183.9
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGGAGACTGTAGAGGTCAGAAAAGGGCATCCAACGCCCTGGCACTaGAGTTACAGATGGTTGGAAGCTACCTTGTGGATGCTAGGAATC | + |
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Preference number: 1 (lower is better) Translates to: LETVEVRKGHPTPWH*SYRWLEATLWMLGI Trigger: GATTCCTAGCATCCACAAGGTAGCTTCCAACCATCTGTAACTCCAGTGCCAGGGCGTTGGATGCCCTTTTCTGACCTCTACAGTCTCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| 3UTR CCA 90 bp | GTGTTCCTGGAGACTGTAGAGGTCAGAAAAGGGCATCCAACGCCCTaGCACTGGAGTTACAGATGGTTGGAAGCTACCTTGTGGATGCTA | + |
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Preference number: 1 (lower is better) Translates to: VFLETVEVRKGHPTP*HWSYRWLEATLWML Trigger: TAGCATCCACAAGGTAGCTTCCAACCATCTGTAACTCCAGTGCCAGGGCGTTGGATGCCCTTTTCTGACCTCTACAGTCTCCAGGAACAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| 3UTR GCA 90 bp | ACCCACTCAACTAGCTTATTTTTAATTCCGTGTGTTTGGTTGTTTTaGCTGCACCAGTCAGTGTACCACGTGTTCCTGGAGACTGTAGAG | + |
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Preference number: 1 (lower is better) Translates to: THSTSLFLIPCVWLF*LHQSVYHVFLETVE Trigger: CTCTACAGTCTCCAGGAACACGTGGTACACTGACTGGTGCAGGCAAAACAACCAAACACACGGAATTAAAAATAAGCTAGTTGAGTGGGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| 3UTR-3UTR CCA 90 bp | GAATCAAACGGATCCTCTGCACAAGAGGCCAGTGCTCTTAGCCGCTGGGCCATCGCTGGCAGGCTGAGCTaGGACACAGAGACACCCTGT | + |
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Preference number: 2 (lower is better) Translates to: ESNGSSAQEASALSRWAIAGRLS*DTETPC Trigger: ACAGGGTGTCTCTGTGTCCCAGCTCAGCCTGCCAGC...GATGGCCCAGCGGCTAAGAGCACTGGCCTCTTGTGCAGAGGATCCGTTTGATTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| 3UTR-3UTR TCA 90 bp | CTGCACCAGTCAGTGTACCACGTGTTCCTGGAGACTGTAGAGGTCAGAAAAGGGCCAGCCCCCTCCCCCTaGGAGACACACACAGAGAAC | + |
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Preference number: 2 (lower is better) Translates to: LHQSVYHVFLETVEVRKGPAPSP*ETHTEN Trigger: GTTCTCTGTGTGTGTCTCTCAGGGGGAGGGGGCTGG...CCCTTTTCTGACCTCTACAGTCTCCAGGAACACGTGGTACACTGACTGGTGCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| 3UTR CCA 72 bp | GAGACTGTAGAGGTCAGAAAAGGGCATCCAACGCCCTaGCACTGGAGTTACAGATGGTTGGAAGCTACCTTG | + |
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Preference number: 3 (lower is better) Translates to: ETVEVRKGHPTP*HWSYRWLEATL Trigger: CAAGGTAGCTTCCAACCATCTGTAACTCCAGTGCCAGGGCGTTGGATGCCCTTTTCTGACCTCTACAGTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| 3UTR-3UTR CAA 90 bp | CTGCACCAGTCAGTGTACCACGTGTTCCTGGAGACTGTAGAGGTCAGAAAAGGGTGGAGTTACAGATGGTaGGAAGCTACCTTGTGGATG | + |
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Preference number: 3 (lower is better) Translates to: LHQSVYHVFLETVEVRKGWSYRW*EATLWM Trigger: CATCCACAAGGTAGCTTCCAACCATCTGTAACTCCA...CCCTTTTCTGACCTCTACAGTCTCCAGGAACACGTGGTACACTGACTGGTGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| 3UTR-3UTR CAA 90 bp | CAAACGGATCCTCTGCACAAGAGGCCAGTGCTCTTAGCCGCTGGGCCATCTTTCTTGTATAAAAGCCATTaGTCCTCCTTTGTCCTCTTG | + |
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Preference number: 3 (lower is better) Translates to: QTDPLHKRPVLLAAGPSFLYKSH*SSFVLL Trigger: CAAGAGGACAAAGGAGGACAAATGGCTTTTATACAA...GAAAGATGGCCCAGCGGCTAAGAGCACTGGCCTCTTGTGCAGAGGATCCGTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| 3UTR GCA 72 bp | ACTAGCTTATTTTTAATTCCGTGTGTTTGGTTGTTTTaGCTGCACCAGTCAGTGTACCACGTGTTCCTGGAG | + |
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Preference number: 3 (lower is better) Translates to: TSLFLIPCVWLF*LHQSVYHVFLE Trigger: CTCCAGGAACACGTGGTACACTGACTGGTGCAGGCAAAACAACCAAACACACGGAATTAAAAATAAGCTAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| 3UTR CCA 72 bp | ACCCACTCAACTAGCTTATTTTTAATTCCGTGTGTTTaGTTGTTTTGCCTGCACCAGTCAGTGTACCACGTG | + |
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Preference number: 3 (lower is better) Translates to: THSTSLFLIPCV*LFCLHQSVYHV Trigger: CACGTGGTACACTGACTGGTGCAGGCAAAACAACCAAACACACGGAATTAAAAATAAGCTAGTTGAGTGGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR GCA 90 bp | GTTGGGAGGAGGGCGGGGAGGGGGTCTTGTCCACCCTGCCTATCACCAGCAGGGCTGGAGCTCAGCGCCTaGTGGTTGTGCAGGCGGCTG | + |
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Preference number: 4 (lower is better) Translates to: VGRRAGRGSCPPCLSPAGLELSA*WLCRRL Trigger: CAGCCGCCTGCACAACCAGCAGGCGCTGAGCTCCAG...CCCTGCTGGTGATAGGCAGGGTGGACAAGACCCCCTCCCCGCCCTCCTCCCAAC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR CCA 90 bp | GCTGGGACACAGAGACACCCTGTGGTCCCCATGTTCCAGCTGTCCCCTTGTGACGGCCGCCTCACACGCTaGGCCCTGTGCATGGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: AGTQRHPVVPMFQLSPCDGRLTR*ALCMAC Trigger: GCAGGCCATGCACAGGGCCCAGCGTGTGAGGCGGCC...GTCACAAGGGGACAGCTGGAACATGGGGACCACAGGGTGTCTCTGTGTCCCAGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR TCA 90 bp | GTTGGGAGGAGGGCGGGGAGGGGGTCTTGTCCACCCTGCCTATCACCAGCAGGGCTCATTGTGGCGGTCTaGTCAGATCCAGGCATCGGC | + |
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Preference number: 4 (lower is better) Translates to: VGRRAGRGSCPPCLSPAGLIVAV*SDPGIG Trigger: GCCGATGCCTGGATCTGATCAGACCGCCACAATGAG...CCCTGCTGGTGATAGGCAGGGTGGACAAGACCCCCTCCCCGCCCTCCTCCCAAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR GCA 90 bp | GCTGGGACACAGAGACACCCTGTGGTCCCCATGTTCCAGCTGTCCCCTTGTGACTTCCCCCTCCCAGGGTaGCGCCCCGGTCACCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: AGTQRHPVVPMFQLSPCDFPLPG*RPGHQS Trigger: ACTCTGGTGACCGGGGCGGCACCCTGGGAGGGGGAA...GTCACAAGGGGACAGCTGGAACATGGGGACCACAGGGTGTCTCTGTGTCCCAGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR CCA 90 bp | AGGAATCAAACGGATCCTCTGCACAAGAGGCCAGTGCTCTTAGCCGCTGGGCCACTCCGCGGGGTCGCTTaGGAGCAGGGCCTGGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: RNQTDPLHKRPVLLAAGPLRGVA*EQGLEQ Trigger: CTGCTCCAGGCCCTGCTCCCAAGCGACCCCGCGGAG...TGGCCCAGCGGCTAAGAGCACTGGCCTCTTGTGCAGAGGATCCGTTTGATTCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR GCA 90 bp | AGGAATCAAACGGATCCTCTGCACAAGAGGCCAGTGCTCTTAGCCGCTGGGCCACCCCTGTCCCTACACTaGTGGCCCCTGCACCCGCTC | + |
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Preference number: 4 (lower is better) Translates to: RNQTDPLHKRPVLLAAGPPLSLH*WPLHPL Trigger: GAGCGGGTGCAGGGGCCAGCAGTGTAGGGACAGGGG...TGGCCCAGCGGCTAAGAGCACTGGCCTCTTGTGCAGAGGATCCGTTTGATTCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR GCA 90 bp | AGGAATCAAACGGATCCTCTGCACAAGAGGCCAGTGCTCTTAGCCGCTGGGCCAAGCGCCTGCTGGTTGTaGAGGCGGCTGAGGCGGATG | + |
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Preference number: 4 (lower is better) Translates to: RNQTDPLHKRPVLLAAGPSACWL*RRLRRM Trigger: CATCCGCCTCAGCCGCCTGCACAACCAGCAGGCGCT...TGGCCCAGCGGCTAAGAGCACTGGCCTCTTGTGCAGAGGATCCGTTTGATTCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR GCA 90 bp | AGGAATCAAACGGATCCTCTGCACAAGAGGCCAGTGCTCTTAGCCGCTGGGCCAGCCCTGTGCATGGCCTaGATCCGGAGCCCTTCCTCG | + |
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Preference number: 4 (lower is better) Translates to: RNQTDPLHKRPVLLAAGPALCMA*IRSPSS Trigger: CGAGGAAGGGCTCCGGATGCAGGCCATGCACAGGGC...TGGCCCAGCGGCTAAGAGCACTGGCCTCTTGTGCAGAGGATCCGTTTGATTCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR CCA 90 bp | AACGGATCCTCTGCACAAGAGGCCAGTGCTCTTAGCCGCTGGGCCATCTTTCCATCAGGGCGTCGAAGTTaGGGTCCGGCCGTAGGGACC | + |
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Preference number: 4 (lower is better) Translates to: NGSSAQEASALSRWAIFPSGRRS*GPAVGT Trigger: GGTCCCTACGGCCGGACCCCAACTTCGACGCCCTGA...TGGAAAGATGGCCCAGCGGCTAAGAGCACTGGCCTCTTGTGCAGAGGATCCGTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR CCA 90 bp | AGGAATCAAACGGATCCTCTGCACAAGAGGCCAGTGCTCTTAGCCGCTGGGCCAGAGCTCAGCGCCTGCTaGTTGTGCAGGCGGCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: RNQTDPLHKRPVLLAAGPELSAC*LCRRLR Trigger: CCTCAGCCGCCTGCACAACCAGCAGGCGCTGAGCTC...TGGCCCAGCGGCTAAGAGCACTGGCCTCTTGTGCAGAGGATCCGTTTGATTCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR TCA 90 bp | CGTGTTCCTGGAGACTGTAGAGGTCAGAAAAGGGCATCCAACGCCCTGGCACTGATCCATTCAGCGTCGTaGACGCTCCGCCCCCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: RVPGDCRGQKRASNALALIHSAS*TLRPQE Trigger: CTCCTGGGGGCGGAGCGTTCACGACGCTGAATGGAT...CAGTGCCAGGGCGTTGGATGCCCTTTTCTGACCTCTACAGTCTCCAGGAACACG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR CCA 90 bp | CTTGTCCACCCTGCCTATCACCAGCAGGGTAGGAAACTAGGGTCTATAGAAAAGCTCTCCACCGGGCTCTaGAGGGCTGGGGGCCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: LVHPAYHQQGRKLGSIEKLSTGL*RAGGPR Trigger: CCTGGGGCCCCCAGCCCTCCAGAGCCCGGTGGAGAG...CTTTTCTATAGACCCTAGTTTCCTACCCTGCTGGTGATAGGCAGGGTGGACAAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR TCA 90 bp | CGTGTTCCTGGAGACTGTAGAGGTCAGAAAAGGGCATCCAACGCCCTGGCACTGATGAGCACCCGGTCCTaGTGGGCCTCGTATTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: RVPGDCRGQKRASNALALMSTRS*WASYSS Trigger: GGAGGAATACGAGGCCCATCAGGACCGGGTGCTCAT...CAGTGCCAGGGCGTTGGATGCCCTTTTCTGACCTCTACAGTCTCCAGGAACACG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR GCA 90 bp | CTGCACCAGTCAGTGTACCACGTGTTCCTGGAGACTGTAGAGGTCAGAAAAGGGACACGCTGGGCCCTGTaGATGGCCTGCATCCGGAGC | + |
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Preference number: 4 (lower is better) Translates to: LHQSVYHVFLETVEVRKGTRWAL*MACIRS Trigger: GCTCCGGATGCAGGCCATGCACAGGGCCCAGCGTGT...CCCTTTTCTGACCTCTACAGTCTCCAGGAACACGTGGTACACTGACTGGTGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR CCA 90 bp | TGCCTGCACCAGTCAGTGTACCACGTGTTCCTGGAGACTGTAGAGGTCAGAAAACTGTCCCTACACTGCTaGCCCCTGCACCCGCTCCGC | + |
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Preference number: 4 (lower is better) Translates to: CLHQSVYHVFLETVEVRKLSLHC*PLHPLR Trigger: GCGGAGCGGGTGCAGGGGCCAGCAGTGTAGGGACAG...TTTTCTGACCTCTACAGTCTCCAGGAACACGTGGTACACTGACTGGTGCAGGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR CCA 90 bp | TTGCCTGCACCAGTCAGTGTACCACGTGTTCCTGGAGACTGTAGAGGTCAGAAAGCCCTCCGGGCTCTGTaGTTTCCTGCTGCTGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: LPAPVSVPRVPGDCRGQKALRAL*FPAAAS Trigger: GGAGGCAGCAGCAGGAAACCACAGAGCCCGGAGGGC...TTTCTGACCTCTACAGTCTCCAGGAACACGTGGTACACTGACTGGTGCAGGCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR TCA 90 bp | AACGGATCCTCTGCACAAGAGGCCAGTGCTCTTAGCCGCTGGGCCATCTTTCCAGGCAGATGGGACACATaGGCTCAGAATGCAGTGACC | + |
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Preference number: 4 (lower is better) Translates to: NGSSAQEASALSRWAIFPGRWDT*AQNAVT Trigger: GGTCACTGCATTCTGAGCTCATGTGTCCCATCTGCC...TGGAAAGATGGCCCAGCGGCTAAGAGCACTGGCCTCTTGTGCAGAGGATCCGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR TCA 90 bp | GCTGGGACACAGAGACACCCTGTGGTCCCCATGTTCCAGCTGTCCCCTTGTGACAGGTACTTGGAGAGATaGTCCACTGTGGCATTCCCA | + |
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Preference number: 4 (lower is better) Translates to: AGTQRHPVVPMFQLSPCDRYLER*STVAFP Trigger: TGGGAATGCCACAGTGGATCATCTCTCCAAGTACCT...GTCACAAGGGGACAGCTGGAACATGGGGACCACAGGGTGTCTCTGTGTCCCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR GCA 90 bp | AACGGATCCTCTGCACAAGAGGCCAGTGCTCTTAGCCGCTGGGCCATCTTTCCACACATGAGCTCAGAATaGAGTGACCGAGGCGAAACC | + |
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Preference number: 4 (lower is better) Translates to: NGSSAQEASALSRWAIFPHMSSE*SDRGET Trigger: GGTTTCGCCTCGGTCACTGCATTCTGAGCTCATGTG...TGGAAAGATGGCCCAGCGGCTAAGAGCACTGGCCTCTTGTGCAGAGGATCCGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR GCA 90 bp | TTGCCTGCACCAGTCAGTGTACCACGTGTTCCTGGAGACTGTAGAGGTCAGAAATCCTCTCCAGGGCAATaGGCAGGGCCAGGTACTTGG | + |
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Preference number: 4 (lower is better) Translates to: LPAPVSVPRVPGDCRGQKSSPGQ*AGPGTW Trigger: CCAAGTACCTGGCCCTGCGCATTGCCCTGGAGAGGA...TTTCTGACCTCTACAGTCTCCAGGAACACGTGGTACACTGACTGGTGCAGGCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR GCA 90 bp | CTGCACCAGTCAGTGTACCACGTGTTCCTGGAGACTGTAGAGGTCAGAAAAGGGGTGGTTTCCTGCTGCTaGCTCCTCTCCAGGGCAATG | + |
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Preference number: 4 (lower is better) Translates to: LHQSVYHVFLETVEVRKGVVSCC*LLSRAM Trigger: CATTGCCCTGGAGAGGAGGCAGCAGCAGGAAACCAC...CCCTTTTCTGACCTCTACAGTCTCCAGGAACACGTGGTACACTGACTGGTGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR CCA 90 bp | GAATCAAACGGATCCTCTGCACAAGAGGCCAGTGCTCTTAGCCGCTGGGCCATCGTTCCCACGTTTTGCTaGCATTCTGTGCATTCGCCG | + |
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Preference number: 4 (lower is better) Translates to: ESNGSSAQEASALSRWAIVPTFC*HSVHSP Trigger: CGGCGAATGCACAGAATGCCAGCAAAACGTGGGAAC...GATGGCCCAGCGGCTAAGAGCACTGGCCTCTTGTGCAGAGGATCCGTTTGATTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR GCA 90 bp | TTTTGCCTGCACCAGTCAGTGTACCACGTGTTCCTGGAGACTGTAGAGGTCAGATCTGTGGTTTCCTGCTaGTGCCTCCTCTCCAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: FCLHQSVYHVFLETVEVRSVVSC*CLLSRA Trigger: TGCCCTGGAGAGGAGGCAGCAGCAGGAAACCACAGA...TCTGACCTCTACAGTCTCCAGGAACACGTGGTACACTGACTGGTGCAGGCAAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR CCA 90 bp | TTTTGCCTGCACCAGTCAGTGTACCACGTGTTCCTGGAGACTGTAGAGGTCAGATCCACAAGCAGGGGATaGGGCCGGAACACAAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: FCLHQSVYHVFLETVEVRSTSRG*GRNTSS Trigger: TGAGCTTGTGTTCCGGCCCCATCCCCTGCTTGTGGA...TCTGACCTCTACAGTCTCCAGGAACACGTGGTACACTGACTGGTGCAGGCAAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR TCA 90 bp | TTGCCTGCACCAGTCAGTGTACCACGTGTTCCTGGAGACTGTAGAGGTCAGAAATGTACTGCTTTTCGCTaGCACCTTCCAGGCTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: LPAPVSVPRVPGDCRGQKCTAFR*HLPGWA Trigger: TGCCCAGCCTGGAAGGTGTCAGCGAAAAGCAGTACA...TTTCTGACCTCTACAGTCTCCAGGAACACGTGGTACACTGACTGGTGCAGGCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR GCA 90 bp | CTTGTCCACCCTGCCTATCACCAGCAGGGTAGGAAACTAGGGTCTATAGAAAAGTCCGAGCAGAACCTATaGAGGCACTCCTTGGTGGTC | + |
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Preference number: 4 (lower is better) Translates to: LVHPAYHQQGRKLGSIEKSEQNL*RHSLVV Trigger: GACCACCAAGGAGTGCCTGCATAGGTTCTGCTCGGA...CTTTTCTATAGACCCTAGTTTCCTACCCTGCTGGTGATAGGCAGGGTGGACAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR CCA 90 bp | CTGCACCAGTCAGTGTACCACGTGTTCCTGGAGACTGTAGAGGTCAGAAAAGGGGCAGGCACTCCTTGGTaGTCATTGTGTTCTTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: LHQSVYHVFLETVEVRKGAGTPW*SLCSSA Trigger: TGCTGAAGAACACAATGACCACCAAGGAGTGCCTGC...CCCTTTTCTGACCTCTACAGTCTCCAGGAACACGTGGTACACTGACTGGTGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR CCA 90 bp | CGTGTTCCTGGAGACTGTAGAGGTCAGAAAAGGGCATCCAACGCCCTGGCACTGTATGCAGGCACTCCTTaGTGGTCATTGTGTTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: RVPGDCRGQKRASNALALYAGTP*WSLCSS Trigger: TGAAGAACACAATGACCACCAAGGAGTGCCTGCATA...CAGTGCCAGGGCGTTGGATGCCCTTTTCTGACCTCTACAGTCTCCAGGAACACG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR CCA 90 bp | CTGCACCAGTCAGTGTACCACGTGTTCCTGGAGACTGTAGAGGTCAGAAAAGGGAGAGCTCTAAGGGCCTaGACACCTTCCAGAACTTCT | + |
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Preference number: 4 (lower is better) Translates to: LHQSVYHVFLETVEVRKGRALRA*TPSRTS Trigger: AGAAGTTCTGGAAGGTGTCCAGGCCCTTAGAGCTCT...CCCTTTTCTGACCTCTACAGTCTCCAGGAACACGTGGTACACTGACTGGTGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR GCA 90 bp | TTGCCTGCACCAGTCAGTGTACCACGTGTTCCTGGAGACTGTAGAGGTCAGAAATCAGTTCCCACGTTTTaGTGGCATTCTGTGCATTCG | + |
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Preference number: 4 (lower is better) Translates to: LPAPVSVPRVPGDCRGQKSVPTF*WHSVHS Trigger: CGAATGCACAGAATGCCAGCAAAACGTGGGAACTGA...TTTCTGACCTCTACAGTCTCCAGGAACACGTGGTACACTGACTGGTGCAGGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR CAA 90 bp | GTTGGGAGGAGGGCGGGGAGGGGGTCTTGTCCACCCTGCCTATCACCAGCAGGGGCTCCGCGGGGTCGCTaGGGAGCAGGGCCTGGAGCA | + |
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Preference number: 5 (lower is better) Translates to: VGRRAGRGSCPPCLSPAGAPRGR*GAGPGA Trigger: TGCTCCAGGCCCTGCTCCCAAGCGACCCCGCGGAGC...CCCTGCTGGTGATAGGCAGGGTGGACAAGACCCCCTCCCCGCCCTCCTCCCAAC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS CCA 90 bp | GATCAGATCCAGGCATCGGCCGCCTCACACGCTGGGCCCTGTGCATaGCCTGCATCCGGAGCCCTTCCTCGATACTGGAGCTCAGCGCCT | + |
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Preference number: 5 (lower is better) Translates to: DQIQASAASHAGPCA*PASGALPRYWSSAP Trigger: AGGCGCTGAGCTCCAGTATCGAGGAAGGGCTCCGGATGCAGGCCATGCACAGGGCCCAGCGTGTGAGGCGGCCGATGCCTGGATCTGATC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR CAA 90 bp | TGGGAGGAGGGCGGGGAGGGGGTCTTGTCCACCCTGCCTATCACCAGCAGGGTAGGCCGTAGGGACCGCTaGGATACCAGCTTTTTCCGG | + |
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Preference number: 5 (lower is better) Translates to: WEEGGEGVLSTLPITSRVGRRDR*DTSFFR Trigger: CCGGAAAAAGCTGGTATCCAAGCGGTCCCTACGGCC...TACCCTGCTGGTGATAGGCAGGGTGGACAAGACCCCCTCCCCGCCCTCCTCCCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS CCA 90 bp | ACGTACCGAGTCTGGCAGTACTCTCCTTTCTCCACAAGCAGGGGATaGGGCCGGAACACAAGCTCAATCTCTCCACCGGGCTCTGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: TYRVWQYSPFSTSRG*GRNTSSISPPGSGG Trigger: CCCTCCAGAGCCCGGTGGAGAGATTGAGCTTGTGTTCCGGCCCCATCCCCTGCTTGTGGAGAAAGGAGAGTACTGCCAGACTCGGTACGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS GCA 90 bp | TTCCCGCTCCGCAGGGCGGTGACGATGCAGTCCGAGCAGAACCTATaGAGGCACTCCTTGGTGGTCATTGTGTTCTTCAGCATGTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: FPLRRAVTMQSEQNL*RHSLVVIVFFSMSR Trigger: CCTGGACATGCTGAAGAACACAATGACCACCAAGGAGTGCCTGCATAGGTTCTGCTCGGACTGCATCGTCACCGCCCTGCGGAGCGGGAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR CAA 90 bp | CTTGTCCACCCTGCCTATCACCAGCAGGGTAGGAAACTAGGGTCTATAGAAAAGCTCAGCGCCTGCTGGTaGTGCAGGCGGCTGAGGCGG | + |
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Preference number: 5 (lower is better) Translates to: LVHPAYHQQGRKLGSIEKLSACW*CRRLRR Trigger: CCGCCTCAGCCGCCTGCACAACCAGCAGGCGCTGAG...CTTTTCTATAGACCCTAGTTTCCTACCCTGCTGGTGATAGGCAGGGTGGACAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS TCA 90 bp | TGCCTCCTCTCCAGGGCAATGCGCAGGGCCAGGTACTTGGAGAGATaGTCCACTGTGGCATTCCCAGTAGTCTTCACGTACCGAGTCTGG | + |
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Preference number: 5 (lower is better) Translates to: CLLSRAMRRARYLER*STVAFPVVFTYRVW Trigger: CCAGACTCGGTACGTGAAGACTACTGGGAATGCCACAGTGGATCATCTCTCCAAGTACCTGGCCCTGCGCATTGCCCTGGAGAGGAGGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR CAA 90 bp | TTTTGCCTGCACCAGTCAGTGTACCACGTGTTCCTGGAGACTGTAGAGGTCAGAATCAGGGCGTCGAAGTaGGGGTCCGGCCGTAGGGAC | + |
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Preference number: 5 (lower is better) Translates to: FCLHQSVYHVFLETVEVRIRASK*GSGRRD Trigger: GTCCCTACGGCCGGACCCCAACTTCGACGCCCTGAT...TCTGACCTCTACAGTCTCCAGGAACACGTGGTACACTGACTGGTGCAGGCAAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS TCA 90 bp | CCTGGACACCTTCCAGAACTTCTCGTTTACAAGCTCCAAGGTCAGTaGTCCATTCAGCGTCGTGAACGCTCCGCCCCCAGGAGCGATGTA | + |
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Preference number: 5 (lower is better) Translates to: PGHLPELLVYKLQGQ*SIQRRERSAPRSDV Trigger: TACATCGCTCCTGGGGGCGGAGCGTTCACGACGCTGAATGGATCACTGACCTTGGAGCTTGTAAACGAGAAGTTCTGGAAGGTGTCCAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR CAA 90 bp | CAAACGGATCCTCTGCACAAGAGGCCAGTGCTCTTAGCCGCTGGGCCATCTTTCCTCAGTTCCCACGTTTaGCTGGCATTCTGTGCATTC | + |
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Preference number: 5 (lower is better) Translates to: QTDPLHKRPVLLAAGPSFLSSHV*LAFCAF Trigger: GAATGCACAGAATGCCAGCAAAACGTGGGAACTGAG...GAAAGATGGCCCAGCGGCTAAGAGCACTGGCCTCTTGTGCAGAGGATCCGTTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS TCA 90 bp | ACTTCTCGTTTACAAGCTCCAAGGTCAGTGATCCATTCAGCGTCGTaGACGCTCCGCCCCCAGGAGCGATGTAGATGGTGTACTGCTTTT | + |
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Preference number: 5 (lower is better) Translates to: TSRLQAPRSVIHSAS*TLRPQERCRWCTAF Trigger: AAAAGCAGTACACCATCTACATCGCTCCTGGGGGCGGAGCGTTCACGACGCTGAATGGATCACTGACCTTGGAGCTTGTAAACGAGAAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS-3UTR CAA 90 bp | TGCCTGCACCAGTCAGTGTACCACGTGTTCCTGGAGACTGTAGAGGTCAGAAAAACTCCTTGGTGGTCATaGTGTTCTTCAGCATGTCCA | + |
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Preference number: 5 (lower is better) Translates to: CLHQSVYHVFLETVEVRKTPWWS*CSSACP Trigger: TGGACATGCTGAAGAACACAATGACCACCAAGGAGT...TTTTCTGACCTCTACAGTCTCCAGGAACACGTGGTACACTGACTGGTGCAGGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS CCA 72 bp | CGGAGCCCTTCCTCGATACTGGAGCTCAGCGCCTGCTaGTTGTGCAGGCGGCTGAGGCGGATGAGCACCCGG | + |
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Preference number: 6 (lower is better) Translates to: RSPSSILELSAC*LCRRLRRMSTR Trigger: CCGGGTGCTCATCCGCCTCAGCCGCCTGCACAACCAGCAGGCGCTGAGCTCCAGTATCGAGGAAGGGCTCCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS CCA 72 bp | CAGGCATCGGCCGCCTCACACGCTGGGCCCTGTGCATaGCCTGCATCCGGAGCCCTTCCTCGATACTGGAGC | + |
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Preference number: 6 (lower is better) Translates to: QASAASHAGPCA*PASGALPRYWS Trigger: GCTCCAGTATCGAGGAAGGGCTCCGGATGCAGGCCATGCACAGGGCCCAGCGTGTGAGGCGGCCGATGCCTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS CAA 72 bp | AGCCCTTCCTCGATACTGGAGCTCAGCGCCTGCTGGTaGTGCAGGCGGCTGAGGCGGATGAGCACCCGGTCC | + |
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Preference number: 6 (lower is better) Translates to: SPSSILELSACW*CRRLRRMSTRS Trigger: GGACCGGGTGCTCATCCGCCTCAGCCGCCTGCACAACCAGCAGGCGCTGAGCTCCAGTATCGAGGAAGGGCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS GCA 72 bp | ATCCGGAGCCCTTCCTCGATACTGGAGCTCAGCGCCTaGTGGTTGTGCAGGCGGCTGAGGCGGATGAGCACC | + |
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Preference number: 6 (lower is better) Translates to: IRSPSSILELSA*WLCRRLRRMST Trigger: GGTGCTCATCCGCCTCAGCCGCCTGCACAACCAGCAGGCGCTGAGCTCCAGTATCGAGGAAGGGCTCCGGAT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS CAA 72 bp | AGGGCGTCGAAGTTGGGGTCCGGCCGTAGGGACCGCTaGGATACCAGCTTTTTCCGGCAGGTAGGGCACTCC | + |
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Preference number: 6 (lower is better) Translates to: RASKLGSGRRDR*DTSFFRQVGHS Trigger: GGAGTGCCCTACCTGCCGGAAAAAGCTGGTATCCAAGCGGTCCCTACGGCCGGACCCCAACTTCGACGCCCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS CAA 90 bp | AGGGACCGCTTGGATACCAGCTTTTTCCGGCAGGTAGGGCACTCCTaGTTCCCGCTCCGCAGGGCGGTGACGATGCAGTCCGAGCAGAAC | + |
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Preference number: 6 (lower is better) Translates to: RDRLDTSFFRQVGHS*FPLRRAVTMQSEQN Trigger: GTTCTGCTCGGACTGCATCGTCACCGCCCTGCGGAGCGGGAACAAGGAGTGCCCTACCTGCCGGAAAAAGCTGGTATCCAAGCGGTCCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS CAA 90 bp | TTGGAGATCAGGGCGTCGAAGTTGGGGTCCGGCCGTAGGGACCGCTaGGATACCAGCTTTTTCCGGCAGGTAGGGCACTCCTTGTTCCCG | + |
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Preference number: 6 (lower is better) Translates to: LEIRASKLGSGRRDR*DTSFFRQVGHSLFP Trigger: CGGGAACAAGGAGTGCCCTACCTGCCGGAAAAAGCTGGTATCCAAGCGGTCCCTACGGCCGGACCCCAACTTCGACGCCCTGATCTCCAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS TCA 72 bp | CCCCAGGAGCGATGTAGATGGTGTACTGCTTTTCGCTaGCACCTTCCAGGCTGGGCAGCGCAGGCTCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: PQERCRWCTAFR*HLPGWAAQAPQ Trigger: CTGAGGAGCCTGCGCTGCCCAGCCTGGAAGGTGTCAGCGAAAAGCAGTACACCATCTACATCGCTCCTGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS CAA 72 bp | TTGGATACCAGCTTTTTCCGGCAGGTAGGGCACTCCTaGTTCCCGCTCCGCAGGGCGGTGACGATGCAGTCC | + |
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Preference number: 6 (lower is better) Translates to: LDTSFFRQVGHS*FPLRRAVTMQS Trigger: GGACTGCATCGTCACCGCCCTGCGGAGCGGGAACAAGGAGTGCCCTACCTGCCGGAAAAAGCTGGTATCCAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS CCA 72 bp | GTCTGGCAGTACTCTCCTTTCTCCACAAGCAGGGGATaGGGCCGGAACACAAGCTCAATCTCTCCACCGGGC | + |
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Preference number: 6 (lower is better) Translates to: VWQYSPFSTSRG*GRNTSSISPPG Trigger: GCCCGGTGGAGAGATTGAGCTTGTGTTCCGGCCCCATCCCCTGCTTGTGGAGAAAGGAGAGTACTGCCAGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS GCA 72 bp | CGCAGGGCGGTGACGATGCAGTCCGAGCAGAACCTATaGAGGCACTCCTTGGTGGTCATTGTGTTCTTCAGC | + |
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Preference number: 6 (lower is better) Translates to: RRAVTMQSEQNL*RHSLVVIVFFS Trigger: GCTGAAGAACACAATGACCACCAAGGAGTGCCTGCATAGGTTCTGCTCGGACTGCATCGTCACCGCCCTGCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS TCA 72 bp | TCCAGGGCAATGCGCAGGGCCAGGTACTTGGAGAGATaGTCCACTGTGGCATTCCCAGTAGTCTTCACGTAC | + |
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Preference number: 6 (lower is better) Translates to: SRAMRRARYLER*STVAFPVVFTY Trigger: GTACGTGAAGACTACTGGGAATGCCACAGTGGATCATCTCTCCAAGTACCTGGCCCTGCGCATTGCCCTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS TCA 72 bp | TTACAAGCTCCAAGGTCAGTGATCCATTCAGCGTCGTaGACGCTCCGCCCCCAGGAGCGATGTAGATGGTGT | + |
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Preference number: 6 (lower is better) Translates to: LQAPRSVIHSAS*TLRPQERCRWC Trigger: ACACCATCTACATCGCTCCTGGGGGCGGAGCGTTCACGACGCTGAATGGATCACTGACCTTGGAGCTTGTAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS CCA 72 bp | GGTCCTTCGTGGGGGCATAGCAGAGCTCTAAGGGCCTaGACACCTTCCAGAACTTCTCGTTTACAAGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: GPSWGHSRALRA*TPSRTSRLQAP Trigger: TGGAGCTTGTAAACGAGAAGTTCTGGAAGGTGTCCAGGCCCTTAGAGCTCTGCTATGCCCCCACGAAGGACC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS TCA 72 bp | GTCCAGGCAGATGGGACACATGAGCTCAGAATGCAGTaGCCGAGGCGAAACCGCAATCTCTGTACCATCCAT | + |
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Preference number: 6 (lower is better) Translates to: VQADGTHELRMQ*PRRNRNLCTIH Trigger: ATGGATGGTACAGAGATTGCGGTTTCGCCTCGGTCACTGCATTCTGAGCTCATGTGTCCCATCTGCCTGGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS CCA 72 bp | TGCAGTCCGAGCAGAACCTATGCAGGCACTCCTTGGTaGTCATTGTGTTCTTCAGCATGTCCAGGCAGATGG | + |
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Preference number: 6 (lower is better) Translates to: CSPSRTYAGTPW*SLCSSACPGRW Trigger: CCATCTGCCTGGACATGCTGAAGAACACAATGACCACCAAGGAGTGCCTGCATAGGTTCTGCTCGGACTGCA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS CCA 72 bp | CGATGCAGTCCGAGCAGAACCTATGCAGGCACTCCTTaGTGGTCATTGTGTTCTTCAGCATGTCCAGGCAGA | + |
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Preference number: 6 (lower is better) Translates to: RCSPSRTYAGTP*WSLCSSACPGR Trigger: TCTGCCTGGACATGCTGAAGAACACAATGACCACCAAGGAGTGCCTGCATAGGTTCTGCTCGGACTGCATCG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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| CDS CCA 72 bp | ACTGTGGCATTCCCAGTAGTCTTCACGTACCGAGTCTaGCAGTACTCTCCTTTCTCCACAAGCAGGGGATGG | + |
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Preference number: 6 (lower is better) Translates to: TVAFPVVFTYRV*QYSPFSTSRGW Trigger: CCATCCCCTGCTTGTGGAGAAAGGAGAGTACTGCCAGACTCGGTACGTGAAGACTACTGGGAATGCCACAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025183.9 |
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