RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RIN3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044456

Ensembl transcript IDs: ENSMUST00000056950.14, ENSMUST00000101114.11, ENSMUST00000133820.2, ENSMUST00000150795.8

Found 428 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTTGTGAAACAATGGCAGGGTCGGGGTGGGGCTAGAAGCGGAGCCTaGTGGACTCAGACTCGGAGGACTCAGAAGCCGGGCTCAGAGCGG +
Preference number: 1 (lower is better)
Translates to: FVKQWQGRGGARSGA*WTQTRRTQKPGSER
Trigger: CCGCTCTGAGCCCGGCTTCTGAGTCCTCCGAGTCTGAGTCCACCAGGCTCCGCTTCTAGCCCCACCCCGACCCTGCCATTGTTTCACAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR GCA 90 bp GTGGACTCAGACTCGGAGGACTCAGAAGCCGGGCTCAGAGCGGCTTaGAGAACACAGAAGGCTGCAGAGCAGAGCAGAGGCTGTTGCTCA +
Preference number: 1 (lower is better)
Translates to: VDSDSEDSEAGLRAA*RTQKAAEQSRGCCS
Trigger: TGAGCAACAGCCTCTGCTCTGCTCTGCAGCCTTCTGTGTTCTGCAAGCCGCTCTGAGCCCGGCTTCTGAGTCCTCCGAGTCTGAGTCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR TCA 90 bp CAGGCACCTAGATGGCAGGGATGTGTGGTTAAGGAGAGCGGCCAATaGGAGCCCAGTCCCAATCCCTCTAGCCTCCTCTCAGGAGATCCT +
Preference number: 1 (lower is better)
Translates to: QAPRWQGCVVKESGQ*EPSPNPSSLLSGDP
Trigger: AGGATCTCCTGAGAGGAGGCTAGAGGGATTGGGACTGGGCTCTCATTGGCCGCTCTCCTTAACCACACATCCCTGCCATCTAGGTGCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR GCA 90 bp GGAGAATTGCCTGAGGAACCTGGTGTGAGCAGGGTTGGGCTTGTTTaGTGCAGCTGGCAAGAGCCTCTTCCACCTGAGCCTTGGTTTCCC +
Preference number: 1 (lower is better)
Translates to: GELPEEPGVSRVGLV*CSWQEPLPPEPWFP
Trigger: GGGAAACCAAGGCTCAGGTGGAAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGCTCACACCAGGTTCCTCAGGCAATTCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR TCA 90 bp CCTGATTGGCTTAGGCATGCTCAGTGGGCGTTACACCAGTGTGACTaGCACAGGCACCTAGATGGCAGGGATGTGTGGTTAAGGAGAGCG +
Preference number: 1 (lower is better)
Translates to: PDWLRHAQWALHQCD*HRHLDGRDVWLRRA
Trigger: CGCTCTCCTTAACCACACATCCCTGCCATCTAGGTGCCTGTGTCAGTCACACTGGTGTAACGCCCACTGAGCATGCCTAAGCCAATCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR TCA 90 bp CACAGAAGGCTGCAGAGCAGAGCAGAGGCTGTTGCTCACAAAGTCTaGTGGCCCTCCCCTCCACTTCTCAGAATTCTCCATGCAGGTTTG +
Preference number: 1 (lower is better)
Translates to: HRRLQSRAEAVAHKV*WPSPPLLRILHAGL
Trigger: CAAACCTGCATGGAGAATTCTGAGAAGTGGAGGGGAGGGCCATCAGACTTTGTGAGCAACAGCCTCTGCTCTGCTCTGCAGCCTTCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR CCA 90 bp CAGGGCTGTCTCTTCAAAACAATACTCTTAGATCTTGGGTTGTGGTaGAACATCTCAGCTCCATCCCCGAGGGTCAGGGAGCAGCTGGGG +
Preference number: 1 (lower is better)
Translates to: QGCLFKTILLDLGLW*NISAPSPRVREQLG
Trigger: CCCCAGCTGCTCCCTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGTATTGTTTTGAAGAGACAGCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CCA 90 bp CCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGTCCCTaGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTG +
Preference number: 1 (lower is better)
Translates to: PLPILWHWLNLSMCP*SWLGCFQWSSGAPL
Trigger: CAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR TCA 90 bp TATATACCTGTCAGTGGCAGTGGAAAGGCTGAGGTAGGAGGACCATaGGTTCGAGGCCAGCCTGGATTAAAGATCCCCAAACAGGCTCCC +
Preference number: 1 (lower is better)
Translates to: YIPVSGSGKAEVGGP*VRGQPGLKIPKQAP
Trigger: GGGAGCCTGTTTGGGGATCTTTAATCCAGGCTGGCCTCGAACTCATGGTCCTCCTACCTCAGCCTTTCCACTGCCACTGACAGGTATATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
3UTR CCA 90 bp GTGCAGGGCTGTCTCTTCAAAACAATACTCTTAGATCTTGGGTTGTaGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGGGAGCAGCTG +
Preference number: 1 (lower is better)
Translates to: VQGCLFKTILLDLGL*WNISAPSPRVREQL
Trigger: CAGCTGCTCCCTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGTATTGTTTTGAAGAGACAGCCCTGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CCA 90 bp GGATGCGGTGCAGGGCTGTCTCTTCAAAACAATACTCTTAGATCTTaGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGGGA +
Preference number: 1 (lower is better)
Translates to: GCGAGLSLQNNTLRS*VVVEHLSSIPEGQG
Trigger: TCCCTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGTATTGTTTTGAAGAGACAGCCCTGCACCGCATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CCA 90 bp TTTATGGCATTGGTTGAACTTGTCCATGTGTCCCTGGAGCTGGCTTaGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTAGGCACT +
Preference number: 1 (lower is better)
Translates to: FMALVELVHVSLELA*LLPVELRSPVVLGT
Trigger: AGTGCCTAGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGACACATGGACAAGTTCAACCAATGCCATAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CCA 90 bp ACCAGGGCCAGGTGTCTGGCAGTTTCAGGTCTTCATCTGTTCAGATaGACTGGAAAGCTAACCTCTCCTTGGCTCTGGGTAAAAGTCAGT +
Preference number: 1 (lower is better)
Translates to: TRARCLAVSGLHLFR*TGKLTSPWLWVKVS
Trigger: ACTGACTTTTACCCAGAGCCAAGGAGAGGTTAGCTTTCCAGTCCATCTGAACAGATGAAGACCTGAAACTGCCAGACACCTGGCCCTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR CCA 90 bp ACGACACACGGCAAGTCATGGCTTGAGAATGTAGTAATGAGTCACTaGAACCCAGGACCGGACATCTCATTTCCTCCCCTTTCTCTGTCG +
Preference number: 1 (lower is better)
Translates to: TTHGKSWLENVVMSH*NPGPDISFPPLSLS
Trigger: CGACAGAGAAAGGGGAGGAAATGAGATGTCCGGTCCTGGGTTCCAGTGACTCATTACTACATTCTCAAGCCATGACTTGCCGTGTGTCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
3UTR CCA 90 bp CCATCACAGAACAGGCCTTTAATGACCCTCCCACTCCCAATTTTATaGCATTGGTTGAACTTGTCCATGTGTCCCTGGAGCTGGCTTGGT +
Preference number: 1 (lower is better)
Translates to: PSQNRPLMTLPLPIL*HWLNLSMCPWSWLG
Trigger: ACCAAGCCAGCTCCAGGGACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGCCTGTTCTGTGATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CCA 90 bp GAGAAAGCTGAATTTCAGAGAGACGACACGACACACGGCAAGTCATaGCTTGAGAATGTAGTAATGAGTCACTGGAACCCAGGACCGGAC +
Preference number: 1 (lower is better)
Translates to: EKAEFQRDDTTHGKS*LENVVMSHWNPGPD
Trigger: GTCCGGTCCTGGGTTCCAGTGACTCATTACTACATTCTCAAGCCATGACTTGCCGTGTGTCGTGTCGTCTCTCTGAAATTCAGCTTTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
3UTR CCA 90 bp ATGACGTCTTTAATAGTACAAAGCCACTGTGGAATCCAGGCATGGTaGTATATACCTGTCAGTGGCAGTGGAAAGGCTGAGGTAGGAGGA +
Preference number: 1 (lower is better)
Translates to: MTSLIVQSHCGIQAW*YIPVSGSGKAEVGG
Trigger: TCCTCCTACCTCAGCCTTTCCACTGCCACTGACAGGTATATACCACCATGCCTGGATTCCACAGTGGCTTTGTACTATTAAAGACGTCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
3UTR CCA 90 bp TCCATGACGTCTTTAATAGTACAAAGCCACTGTGGAATCCAGGCATaGTGGTATATACCTGTCAGTGGCAGTGGAAAGGCTGAGGTAGGA +
Preference number: 1 (lower is better)
Translates to: SMTSLIVQSHCGIQA*WYIPVSGSGKAEVG
Trigger: TCCTACCTCAGCCTTTCCACTGCCACTGACAGGTATATACCACCATGCCTGGATTCCACAGTGGCTTTGTACTATTAAAGACGTCATGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
3UTR CAA 90 bp GGTGGACTCAGACTCGGAGGACTCAGAAGCCGGGCTCAGAGCGGCTaGCAGAACACAGAAGGCTGCAGAGCAGAGCAGAGGCTGTTGCTC +
Preference number: 2 (lower is better)
Translates to: GGLRLGGLRSRAQSG*QNTEGCRAEQRLLL
Trigger: GAGCAACAGCCTCTGCTCTGCTCTGCAGCCTTCTGTGTTCTGCAAGCCGCTCTGAGCCCGGCTTCTGAGTCCTCCGAGTCTGAGTCCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR TCA 90 bp AACAATGGCAGGGTCGGGGTGGGGCTAGAAGCGGAGCCTGGTGGACTCAGACTCGGTGTGTCCAGTCCTTaGCTGCATGGGTCTGAGGAC +
Preference number: 2 (lower is better)
Translates to: NNGRVGVGLEAEPGGLRLGVSSP*LHGSED
Trigger: GTCCTCAGACCCATGCAGTCAAGGACTGGACACACC...GAGTCTGAGTCCACCAGGCTCCGCTTCTAGCCCCACCCCGACCCTGCCATTGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR TCA 90 bp GTGAGCAGGGTTGGGCTTGTTTGCTGCAGCTGGCAAGAGCCTCTTCCACCTGAGAAGGAGAGCGGCCAATaGGAGCCCAGTCCCAATCCC +
Preference number: 2 (lower is better)
Translates to: VSRVGLVCCSWQEPLPPEKESGQ*EPSPNP
Trigger: GGGATTGGGACTGGGCTCTCATTGGCCGCTCTCCTT...CTCAGGTGGAAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGCTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR TCA 90 bp GCCGGGCTCAGAGCGGCTTGCAGAACACAGAAGGCTGCAGAGCAGAGCAGAGGCAGTGCCCTTGACAGGTaGCCTCATGCAGTTATCCTG +
Preference number: 2 (lower is better)
Translates to: AGLRAACRTQKAAEQSRGSALDR*PHAVIL
Trigger: CAGGATAACTGCATGAGGTCACCTGTCAAGGGCACT...GCCTCTGCTCTGCTCTGCAGCCTTCTGTGTTCTGCAAGCCGCTCTGAGCCCGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR GCA 90 bp TTCAGCACCGGGGACACCTCGTCAGACAGAACCTTCCAGATGGTTCCTCAGGAGGCCAACAGGCCAGTCTaGGCCATCCCTGGCTTCCTG +
Preference number: 2 (lower is better)
Translates to: FSTGDTSSDRTFQMVPQEANRPV*AIPGFL
Trigger: CAGGAAGCCAGGGATGGCGCAGACTGGCCTGTTGGC...CTCCTGAGGAACCATCTGGAAGGTTCTGTCTGACGAGGTGTCCCCGGTGCTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR CCA 90 bp ACTTGTCCATGTGTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGGGGTCAGGGAGCAGCTaGGGCCAGGAACCCCTTCAT +
Preference number: 2 (lower is better)
Translates to: TCPCVPGAGLVASSGAQEGSGSS*GQEPLH
Trigger: ATGAAGGGGTTCCTGGCCCCAGCTGCTCCCTGACCC...CTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGACACATGGACAAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR TCA 90 bp CTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTAGGCGGCGTTACACCAGTGTaGCTGACACAGGCACCTAGA +
Preference number: 2 (lower is better)
Translates to: LELAWLLPVELRSPVVLGGVTPV*LTQAPR
Trigger: TCTAGGTGCCTGTGTCAGTCACACTGGTGTAACGCC...GCCTAGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR TCA 90 bp GTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTACCAGGAGAATTGCCTaGGGAACCTGGTGTGAGCAG +
Preference number: 2 (lower is better)
Translates to: VPGAGLVASSGAQEPRCTTRRIA*GTWCEQ
Trigger: CTGCTCACACCAGGTTCCTCAGGCAATTCTCCTGGT...AGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR GCA 90 bp GTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTAGGGTTGGGCTTGTTTaGTGCAGCTGGCAAGAGCCT +
Preference number: 2 (lower is better)
Translates to: VPGAGLVASSGAQEPRCTRVGLV*CSWQEP
Trigger: AGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCT...AGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR TCA 90 bp AACAATGGCAGGGTCGGGGTGGGGCTAGAAGCGGAGCCTGGTGGACTCAGACTCGAGGTCACATTCTCTTaGGAGCAGGGCCATTCTGTT +
Preference number: 2 (lower is better)
Translates to: NNGRVGVGLEAEPGGLRLEVTFS*EQGHSV
Trigger: AACAGAATGGCCCTGCTCTCAAGAGAATGTGACCTC...GAGTCTGAGTCCACCAGGCTCCGCTTCTAGCCCCACCCCGACCCTGCCATTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR TCA 90 bp AGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGGGAGCAATGGGGGCTAGGAGGTaGGACAGGACCAGGAGAATT +
Preference number: 2 (lower is better)
Translates to: RSWVVVEHLSSIPEGQGAMGARR*DRTRRI
Trigger: AATTCTCCTGGTCCTGTCTCACCTCCTAGCCCCCAT...TGCTCCCTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR CCA 90 bp GCAGGGTTGGGCTTGTTTGCTGCAGCTGGCAAGAGCCTCTTCCACCTGAGCCTTGATGGCAGGGATGTGTaGTTAAGGAGAGCGGCCAAT +
Preference number: 2 (lower is better)
Translates to: AGLGLFAAAGKSLFHLSLDGRDV*LRRAAN
Trigger: ATTGGCCGCTCTCCTTAACCACACATCCCTGCCATC...AAGGCTCAGGTGGAAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CAA 90 bp ATGGCATTGGTTGAACTTGTCCATGTGTCCCTGGAGCTGGCTTGGTaGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTAGGCACTCTG +
Preference number: 2 (lower is better)
Translates to: MALVELVHVSLELAW*LPVELRSPVVLGTL
Trigger: CAGAGTGCCTAGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGACACATGGACAAGTTCAACCAATGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CAA 90 bp AGCGGCTTGCAGAACACAGAAGGCTGCAGAGCAGAGCAGAGGCTGTaGCTCACAAAGTCTGATGGCCCTCCCCTCCACTTCTCAGAATTC +
Preference number: 2 (lower is better)
Translates to: SGLQNTEGCRAEQRL*LTKSDGPPLHFSEF
Trigger: GAATTCTGAGAAGTGGAGGGGAGGGCCATCAGACTTTGTGAGCAACAGCCTCTGCTCTGCTCTGCAGCCTTCTGTGTTCTGCAAGCCGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR TCA 90 bp TGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTAGGCACTCTGGTAGCTTTACACCAGTGTGACTaGCACAGGCACCTAGATGGC +
Preference number: 2 (lower is better)
Translates to: WLLPVELRSPVVLGTLVALHQCD*HRHLDG
Trigger: GCCATCTAGGTGCCTGTGTCAGTCACACTGGTGTAA...AGCTACCAGAGTGCCTAGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR GCA 90 bp GTGGACTCAGACTCGGAGGACTCAGAAGCCGGGCTCAGAGCGGCTTGCAGAACACAGTCAGCCTCTTGTTaGAATGTCAGAAGGTTGGAC +
Preference number: 2 (lower is better)
Translates to: VDSDSEDSEAGLRAACRTQSASC*NVRRLD
Trigger: GTCCAACCTTCTGACATTGCAACAAGAGGCTGACTG...TGTTCTGCAAGCCGCTCTGAGCCCGGCTTCTGAGTCCTCCGAGTCTGAGTCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR CCA 90 bp GAGACAGGACCAGGAGAATTGCCTGAGGAACCTGGTGTGAGCAGGGTTGGGCTTGATGGCAGGGATGTGTaGTTAAGGAGAGCGGCCAAT +
Preference number: 2 (lower is better)
Translates to: ETGPGELPEEPGVSRVGLDGRDV*LRRAAN
Trigger: ATTGGCCGCTCTCCTTAACCACACATCCCTGCCATC...AAGCCCAACCCTGCTCACACCAGGTTCCTCAGGCAATTCTCCTGGTCCTGTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR CCA 90 bp GTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTCTTCCACCTGAGCCTTaGTTTCCCTTACATCCAACT +
Preference number: 2 (lower is better)
Translates to: VPGAGLVASSGAQEPRCTLPPEP*FPLHPT
Trigger: AGTTGGATGTAAGGGAAACCAAGGCTCAGGTGGAAG...AGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CAA 90 bp GCGGTGCAGGGCTGTCTCTTCAAAACAATACTCTTAGATCTTGGGTaGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGGGAGCAG +
Preference number: 2 (lower is better)
Translates to: AVQGCLFKTILLDLG*WWNISAPSPRVREQ
Trigger: CTGCTCCCTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGTATTGTTTTGAAGAGACAGCCCTGCACCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CAA 90 bp ACTGGAAAGCTAACCTCTCCTTGGCTCTGGGTAAAAGTCAGTCTGTaGAGCCCAGCTCTGTGTCTTCAGCACCGGGGACACCTCGTCAGA +
Preference number: 2 (lower is better)
Translates to: TGKLTSPWLWVKVSL*SPALCLQHRGHLVR
Trigger: TCTGACGAGGTGTCCCCGGTGCTGAAGACACAGAGCTGGGCTCAACAGACTGACTTTTACCCAGAGCCAAGGAGAGGTTAGCTTTCCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR TCA 90 bp ACTGTGGAATCCAGGCATGGTGGTATATACCTGTCAGTGGCAGTGGAAAGGCTGGTTCTGGTAGCCCTATaGACACCCAGGAGTTTTGCC +
Preference number: 2 (lower is better)
Translates to: TVESRHGGIYLSVAVERLVLVAL*TPRSFA
Trigger: GGCAAAACTCCTGGGTGTTCATAGGGCTACCAGAAC...CAGCCTTTCCACTGCCACTGACAGGTATATACCACCATGCCTGGATTCCACAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
3UTR-3UTR CCA 90 bp TGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTAGGCACTCTGGTAGCTTTAGATCTTGGGTTGTaGTGGAACATCTCAGCTCCA +
Preference number: 2 (lower is better)
Translates to: WLLPVELRSPVVLGTLVALDLGL*WNISAP
Trigger: TGGAGCTGAGATGTTCCACCACAACCCAAGATCTAA...AGCTACCAGAGTGCCTAGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR CCA 90 bp TCATGGCAGGTGAGCCTGGAGTTTATAGCTTGGTCCTTTTCTTGCCCTCTCTTGAGAGCACAGAAAGGCTaGCAAAGCTGCGCCTTGCCT +
Preference number: 2 (lower is better)
Translates to: SWQVSLEFIAWSFSCPLLRAQKG*QSCALP
Trigger: AGGCAAGGCGCAGCTTTGCCAGCCTTTCTGTGCTCT...CAAGAGAGGGCAAGAAAAGGACCAAGCTATAAACTCCAGGCTCACCTGCCATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR GCA 90 bp TCTGTGTTTGGATTTGCCTCCCCTGAGCATATCTACTTTGGAGTCTCACATGTGGGGCTCAGAGCGGCTTaGAGAACACAGAAGGCTGCA +
Preference number: 2 (lower is better)
Translates to: SVFGFASPEHIYFGVSHVGLRAA*RTQKAA
Trigger: TGCAGCCTTCTGTGTTCTGCAAGCCGCTCTGAGCCC...CACATGTGAGACTCCAAAGTAGATATGCTCAGGGGAGGCAAATCCAAACACAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR GCA 90 bp AAAGATCCCCAAACAGGCTCCCCACAAGCCCAGGTCTGTTCTGGTAGCCCTATGCTCTGTCGTCCTTTGTaGTCAGCAAACAAGAGACAA +
Preference number: 2 (lower is better)
Translates to: KDPQTGSPQAQVCSGSPMLCRPL*SANKRQ
Trigger: TTGTCTCTTGTTTGCTGAGCACAAAGGACGACAGAG...CATAGGGCTACCAGAACAGACCTGGGCTTGTGGGGAGCCTGTTTGGGGATCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
3UTR-3UTR CCA 90 bp GGGCCAGGTGTCTGGCAGTTTCAGGTCTTCATCTGTTCAGATGGACTGGAAAGCACCTCTCCTTGGCTCTaGGTAAAAGTCAGTCTGTTG +
Preference number: 2 (lower is better)
Translates to: GPGVWQFQVFICSDGLESTSPWL*VKVSLL
Trigger: CAACAGACTGACTTTTACCCAGAGCCAAGGAGAGGT...GCTTTCCAGTCCATCTGAACAGATGAAGACCTGAAACTGCCAGACACCTGGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR TCA 90 bp AGGCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCACCAGGAGAATTGCCTaGGGAACCTGGTGTGAGCAG +
Preference number: 2 (lower is better)
Translates to: RPLMTLPLPILWHWLNLSTRRIA*GTWCEQ
Trigger: CTGCTCACACCAGGTTCCTCAGGCAATTCTCCTGGT...GGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR GCA 90 bp AGGCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCAGGGTTGGGCTTGTTTaGTGCAGCTGGCAAGAGCCT +
Preference number: 2 (lower is better)
Translates to: RPLMTLPLPILWHWLNLSRVGLV*CSWQEP
Trigger: AGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCT...GGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR GCA 90 bp CAGGCATGGTGGTATATACCTGTCAGTGGCAGTGGAAAGGCTGAGGTAGGAGGAGCCTTTGGAATTGCTTaGCCATGTGACCCTAACAAA +
Preference number: 2 (lower is better)
Translates to: QAWWYIPVSGSGKAEVGGAFGIA*PCDPNK
Trigger: TTTGTTAGGGTCACATGGGCAAGCAATTCCAAAGGC...TCCTCCTACCTCAGCCTTTCCACTGCCACTGACAGGTATATACCACCATGCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
3UTR-3UTR CCA 90 bp GACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGTCCCTGGATCTTGGGTTGTGGTaGAACATCTCAGCTCCATCC +
Preference number: 2 (lower is better)
Translates to: DPPTPNFMALVELVHVSLDLGLW*NISAPS
Trigger: GGATGGAGCTGAGATGTTCCACCACAACCCAAGATC...CAGGGACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR CCA 90 bp GCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATCTTGGTTGCTTCCAGTaGAGCTCAGGAGCCCCGTTG +
Preference number: 2 (lower is better)
Translates to: AFNDPPTPNFMALVELVHLGCFQ*SSGAPL
Trigger: CAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAG...ATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR CCA 90 bp GGTAGGAGGACCATGAGTTCGAGGCCAGCCTGGATTAAAGATCCCCAAACAGGCACACACGGCAAGTCATaGCTTGAGAATGTAGTAATG +
Preference number: 2 (lower is better)
Translates to: GRRTMSSRPAWIKDPQTGTHGKS*LENVVM
Trigger: CATTACTACATTCTCAAGCCATGACTTGCCGTGTGT...GCCTGTTTGGGGATCTTTAATCCAGGCTGGCCTCGAACTCATGGTCCTCCTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
3UTR-3UTR TCA 90 bp AGGCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCAGAGCCTCTTCCACCTaGGCCTTGGTTTCCCTTACA +
Preference number: 2 (lower is better)
Translates to: RPLMTLPLPILWHWLNLSRASST*ALVSLT
Trigger: TGTAAGGGAAACCAAGGCTCAGGTGGAAGAGGCTCT...GGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR GCA 90 bp TGCACAATTGTCATTGTGATAGATTTTAGGGCATTTTATAGCTACCTCCCTACCGGCAAAGCTGCGCCTTaGCTGTACCAGGGCCAGGTG +
Preference number: 2 (lower is better)
Translates to: CTIVIVIDFRAFYSYLPTGKAAP*LYQGQV
Trigger: CACCTGGCCCTGGTACAGGCAAGGCGCAGCTTTGCC...GGTAGGGAGGTAGCTATAAAATGCCCTAAAATCTATCACAATGACAATTGTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR CCA 90 bp TGTACCAGGGCCAGGTGTCTGGCAGTTTCAGGTCTTCATCTGTTCAGATGGACTAAGCTAACCTCTCCTTaGCTCTGGGTAAAAGTCAGT +
Preference number: 2 (lower is better)
Translates to: CTRARCLAVSGLHLFRWTKLTSP*LWVKVS
Trigger: ACTGACTTTTACCCAGAGCCAAGGAGAGGTTAGCTT...AGTCCATCTGAACAGATGAAGACCTGAAACTGCCAGACACCTGGCCCTGGTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR TCA 90 bp TTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGTGGCGTTACACCAGTGTaGCTGACACAGGCACCTAGA +
Preference number: 2 (lower is better)
Translates to: LMTLPLPILWHWLNLSMCGVTPV*LTQAPR
Trigger: TCTAGGTGCCTGTGTCAGTCACACTGGTGTAACGCC...ACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR TCA 90 bp TCATGGCAGGTGAGCCTGGAGTTTATAGCTTGGTCCTTTTCTTGCCCTCTCTTGTTCTCCATGCAGGTTTaGGTAGGTTTCAACACTCTG +
Preference number: 2 (lower is better)
Translates to: SWQVSLEFIAWSFSCPLLFSMQV*VGFNTL
Trigger: CAGAGTGTTGAAACCTACTCAAACCTGCATGGAGAA...CAAGAGAGGGCAAGAAAAGGACCAAGCTATAAACTCCAGGCTCACCTGCCATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR CAA 90 bp CAGGTGAGCCTGGAGTTTATAGCTTGGTCCTTTTCTTGCCCTCTCTaGCTTTTTGGTGGAGATGTGGAAGATGTCCTAGTCACACATTCT +
Preference number: 2 (lower is better)
Translates to: QVSLEFIAWSFSCPL*LFGGDVEDVLVTHS
Trigger: AGAATGTGTGACTAGGACATCTTCCACATCTCCACCAAAAAGCAAGAGAGGGCAAGAAAAGGACCAAGCTATAAACTCCAGGCTCACCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR TCA 90 bp TTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGTTTACACCAGTGTGACTaGCACAGGCACCTAGATGGC +
Preference number: 2 (lower is better)
Translates to: LMTLPLPILWHWLNLSMCLHQCD*HRHLDG
Trigger: GCCATCTAGGTGCCTGTGTCAGTCACACTGGTGTAA...ACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR TCA 90 bp TTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGCAGTCCTGGGGAAAGTaGGCTCTTCTCAGGAAAGAC +
Preference number: 2 (lower is better)
Translates to: FNDPPTPNFMALVELVHVQSWGK*ALLRKD
Trigger: GTCTTTCCTGAGAAGAGCTCACTTTCCCCAGGACTG...CACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR TCA 90 bp TGCACAATTGTCATTGTGATAGATTTTAGGGCATTTTATAGCTACCTCCCTACCCATGGTCCTTCTGGGTaGACTTCGTCACAGTCAGCC +
Preference number: 2 (lower is better)
Translates to: CTIVIVIDFRAFYSYLPTHGPSG*TSSQSA
Trigger: GGCTGACTGTGACGAAGTTCACCCAGAAGGACCATG...GGTAGGGAGGTAGCTATAAAATGCCCTAAAATCTATCACAATGACAATTGTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR CCA 90 bp CATAGCTGCACAATTGTCATTGTGATAGATTTTAGGGCATTTTATAGCTACCTCCCAGGGCCAGGTGTCTaGCAGTTTCAGGTCTTCATC +
Preference number: 2 (lower is better)
Translates to: HSCTIVIVIDFRAFYSYLPGPGV*QFQVFI
Trigger: GATGAAGACCTGAAACTGCCAGACACCTGGCCCTGG...GAGGTAGCTATAAAATGCCCTAAAATCTATCACAATGACAATTGTGCAGCTATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR CCA 90 bp TCATTTATCAAATGGGTTTCTCCTCCTCTTCCTCCTCCTCCTTTTGGTATAAAATCTGTTCAGATGGACTaGAAAGCTAACCTCTCCTTG +
Preference number: 2 (lower is better)
Translates to: SFIKWVSPPLPPPPFGIKSVQMD*KANLSL
Trigger: CAAGGAGAGGTTAGCTTTCCAGTCCATCTGAACAGA...TTTTATACCAAAAGGAGGAGGAGGAAGAGGAGGAGAAACCCATTTGATAAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR GCA 72 bp GACTCGGAGGACTCAGAAGCCGGGCTCAGAGCGGCTTaGAGAACACAGAAGGCTGCAGAGCAGAGCAGAGGC +
Preference number: 3 (lower is better)
Translates to: DSEDSEAGLRAA*RTQKAAEQSRG
Trigger: GCCTCTGCTCTGCTCTGCAGCCTTCTGTGTTCTGCAAGCCGCTCTGAGCCCGGCTTCTGAGTCCTCCGAGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR CAA 90 bp GTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTCAGGGTTGGGCTTGTTaGCTGCAGCTGGCAAGAGCC +
Preference number: 3 (lower is better)
Translates to: VPGAGLVASSGAQEPRCTQGWAC*LQLARA
Trigger: GGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTG...AGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR GCA 72 bp GAGGAACCTGGTGTGAGCAGGGTTGGGCTTGTTTGCTaGAGCTGGCAAGAGCCTCTTCCACCTGAGCCTTGG +
Preference number: 3 (lower is better)
Translates to: EEPGVSRVGLVC*SWQEPLPPEPW
Trigger: CCAAGGCTCAGGTGGAAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGCTCACACCAGGTTCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR GCA 72 bp CCTGAGGAACCTGGTGTGAGCAGGGTTGGGCTTGTTTaGTGCAGCTGGCAAGAGCCTCTTCCACCTGAGCCT +
Preference number: 3 (lower is better)
Translates to: PEEPGVSRVGLV*CSWQEPLPPEP
Trigger: AGGCTCAGGTGGAAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGCTCACACCAGGTTCCTCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CCA 72 bp CCTGGTGTGAGCAGGGTTGGGCTTGTTTGCTGCAGCTaGCAAGAGCCTCTTCCACCTGAGCCTTGGTTTCCC +
Preference number: 3 (lower is better)
Translates to: PGVSRVGLVCCS*QEPLPPEPWFP
Trigger: GGGAAACCAAGGCTCAGGTGGAAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGCTCACACCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR CAA 90 bp CCTGAGAGCACAGAAAGGCTGGCAAAGCTGCGCCTTGCCTGTACCAGGGCCAGGCAGCTCACTCCATGCTaGAGGTCACATTCTCTTGAG +
Preference number: 3 (lower is better)
Translates to: PESTERLAKLRLACTRARQLTPC*RSHSLE
Trigger: CTCAAGAGAATGTGACCTCAAGCATGGAGTGAGCTG...CCTGGCCCTGGTACAGGCAAGGCGCAGCTTTGCCAGCCTTTCTGTGCTCTCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR TCA 72 bp CAGGCCAGTCTGCGCCATCCCTGGCTTCCTGTGTGGTaGCTTTCATCTCCAGCTCACTCCATGCTTGAGGTC +
Preference number: 3 (lower is better)
Translates to: QASLRHPWLPVW*LSSPAHSMLEV
Trigger: GACCTCAAGCATGGAGTGAGCTGGAGATGAAAGTCACCACACAGGAAGCCAGGGATGGCGCAGACTGGCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR CAA 90 bp CCTGAGAGCACAGAAAGGCTGGCAAAGCTGCGCCTTGCCTGTACCAGGGCCAGGGTAAAAGTCAGTCTGTaGAGCCCAGCTCTGTGTCTT +
Preference number: 3 (lower is better)
Translates to: PESTERLAKLRLACTRARVKVSL*SPALCL
Trigger: AAGACACAGAGCTGGGCTCAACAGACTGACTTTTAC...CCTGGCCCTGGTACAGGCAAGGCGCAGCTTTGCCAGCCTTTCTGTGCTCTCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR TCA 72 bp AGATGGCAGGGATGTGTGGTTAAGGAGAGCGGCCAATaGGAGCCCAGTCCCAATCCCTCTAGCCTCCTCTCA +
Preference number: 3 (lower is better)
Translates to: RWQGCVVKESGQ*EPSPNPSSLLS
Trigger: TGAGAGGAGGCTAGAGGGATTGGGACTGGGCTCTCATTGGCCGCTCTCCTTAACCACACATCCCTGCCATCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR TCA 72 bp AGACAGGACCAGGAGAATTGCCTGAGGAACCTGGTGTaGGCAGGGTTGGGCTTGTTTGCTGCAGCTGGCAAG +
Preference number: 3 (lower is better)
Translates to: RQDQENCLRNLV*AGLGLFAAAGK
Trigger: CTTGCCAGCTGCAGCAAACAAGCCCAACCCTGCTCACACCAGGTTCCTCAGGCAATTCTCCTGGTCCTGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR CAA 90 bp ATACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCCAGGGTTGGGCTTGTTaGCTGCAGCTGGCAAGAGCC +
Preference number: 3 (lower is better)
Translates to: ILLDLGLWWNISAPSPRVQGWAC*LQLARA
Trigger: GGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTG...GACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR CAA 90 bp GTGGACTCAGACTCGGAGGACTCAGAAGCCGGGCTCAGAGCGGCTTGCAGAACATTATCAAAGAAGTCATaGCCAACAGGCCAGTCTGCG +
Preference number: 3 (lower is better)
Translates to: VDSDSEDSEAGLRAACRTLSKKS*PTGQSA
Trigger: CGCAGACTGGCCTGTTGGCAATGACTTCTTTGATAA...TGTTCTGCAAGCCGCTCTGAGCCCGGCTTCTGAGTCCTCCGAGTCTGAGTCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR TCA 72 bp TCAGTGCCCTTGACAGGTGACCTCATGCAGTTATCCTaGGAGCACAGAAAGGCTGGCAAAGCTGCGCCTTGC +
Preference number: 3 (lower is better)
Translates to: SVPLTGDLMQLS*EHRKAGKAAPC
Trigger: GCAAGGCGCAGCTTTGCCAGCCTTTCTGTGCTCTCAGGATAACTGCATGAGGTCACCTGTCAAGGGCACTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR CCA 72 bp TTGGTTGAACTTGTCCATGTGTCCCTGGAGCTGGCTTaGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTA +
Preference number: 3 (lower is better)
Translates to: LVELVHVSLELA*LLPVELRSPVV
Trigger: TACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGACACATGGACAAGTTCAACCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CCA 72 bp CAAAGCTGCGCCTTGCCTGTACCAGGGCCAGGTGTCTaGCAGTTTCAGGTCTTCATCTGTTCAGATGGACTG +
Preference number: 3 (lower is better)
Translates to: QSCALPVPGPGV*QFQVFICSDGL
Trigger: CAGTCCATCTGAACAGATGAAGACCTGAAACTGCCAGACACCTGGCCCTGGTACAGGCAAGGCGCAGCTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR TCA 72 bp CTGCAGAGCAGAGCAGAGGCTGTTGCTCACAAAGTCTaGTGGCCCTCCCCTCCACTTCTCAGAATTCTCCAT +
Preference number: 3 (lower is better)
Translates to: LQSRAEAVAHKV*WPSPPLLRILH
Trigger: ATGGAGAATTCTGAGAAGTGGAGGGGAGGGCCATCAGACTTTGTGAGCAACAGCCTCTGCTCTGCTCTGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR TCA 72 bp GCTCCCCACAAGCCCAGGTCTGTTCTGGTAGCCCTATaGACACCCAGGAGTTTTGCCTTTGGAATTGCTTGC +
Preference number: 3 (lower is better)
Translates to: APHKPRSVLVAL*TPRSFAFGIAC
Trigger: GCAAGCAATTCCAAAGGCAAAACTCCTGGGTGTTCATAGGGCTACCAGAACAGACCTGGGCTTGTGGGGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
3UTR-3UTR CAA 90 bp GGTAGGAGGACCATGAGTTCGAGGCCAGCCTGGATTAAAGATCCCCAAACAGGCCCAGGAGTTTTGCCTTaGGAATTGCTTGCCCATGTG +
Preference number: 3 (lower is better)
Translates to: GRRTMSSRPAWIKDPQTGPGVLP*ELLAHV
Trigger: CACATGGGCAAGCAATTCCAAAGGCAAAACTCCTGG...GCCTGTTTGGGGATCTTTAATCCAGGCTGGCCTCGAACTCATGGTCCTCCTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
3UTR TCA 72 bp GTTGTACTAGGCACTCTGGTAGCTGAAGGCAAATTCTaGGGCAGGGATGCGGTGCAGGGCTGTCTCTTCAAA +
Preference number: 3 (lower is better)
Translates to: VVLGTLVAEGKF*GRDAVQGCLFK
Trigger: TTTGAAGAGACAGCCCTGCACCGCATCCCTGCCTCAGAATTTGCCTTCAGCTACCAGAGTGCCTAGTACAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CCA 72 bp TGCTGCAGCTGGCAAGAGCCTCTTCCACCTGAGCCTTaGTTTCCCTTACATCCAACTAAGAACTTGGTGCCT +
Preference number: 3 (lower is better)
Translates to: CCSWQEPLPPEP*FPLHPTKNLVP
Trigger: AGGCACCAAGTTCTTAGTTGGATGTAAGGGAAACCAAGGCTCAGGTGGAAGAGGCTCTTGCCAGCTGCAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR CAA 90 bp AGGCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCCTGGAGCTGGCTTGGTaGCTTCCAGTGGAGCTCAGG +
Preference number: 3 (lower is better)
Translates to: RPLMTLPLPILWHWLNLSLELAW*LPVELR
Trigger: CCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAG...GGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR TCA 72 bp TCAGAGAGACGACACGACACACGGCAAGTCATGGCTTaGGAATGTAGTAATGAGTCACTGGAACCCAGGACC +
Preference number: 3 (lower is better)
Translates to: SERRHDTRQVMA*ECSNESLEPRT
Trigger: GGTCCTGGGTTCCAGTGACTCATTACTACATTCTCAAGCCATGACTTGCCGTGTGTCGTGTCGTCTCTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
3UTR GCA 72 bp CCCATTATCAAAGAAGTCATTGCCAACAGGCCAGTCTaGGCCATCCCTGGCTTCCTGTGTGGTGACTTTCAT +
Preference number: 3 (lower is better)
Translates to: PIIKEVIANRPV*AIPGFLCGDFH
Trigger: ATGAAAGTCACCACACAGGAAGCCAGGGATGGCGCAGACTGGCCTGTTGGCAATGACTTCTTTGATAATGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR CAA 90 bp TTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGCTGGAGCTGGCTTGGTaGCTTCCAGTGGAGCTCAGG +
Preference number: 3 (lower is better)
Translates to: FNDPPTPNFMALVELVHVLELAW*LPVELR
Trigger: CCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAG...CACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR CAA 90 bp GTGTTTGGATTTGCCTCCCCTGAGCATATCTACTTTGGAGTCTCACATGTGCTTCTTAGCTCAGTGCCCTaGACAGGTGACCTCATGCAG +
Preference number: 3 (lower is better)
Translates to: VFGFASPEHIYFGVSHVLLSSVP*TGDLMQ
Trigger: CTGCATGAGGTCACCTGTCAAGGGCACTGAGCTAAG...AAGCACATGTGAGACTCCAAAGTAGATATGCTCAGGGGAGGCAAATCCAAACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR CAA 90 bp GTGTTTGGATTTGCCTCCCCTGAGCATATCTACTTTGGAGTCTCACATGTGCTTGCAGAGCAGAGGCTGTaGCTCACAAAGTCTGATGGC +
Preference number: 3 (lower is better)
Translates to: VFGFASPEHIYFGVSHVLAEQRL*LTKSDG
Trigger: GCCATCAGACTTTGTGAGCAACAGCCTCTGCTCTGC...AAGCACATGTGAGACTCCAAAGTAGATATGCTCAGGGGAGGCAAATCCAAACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR TCA 72 bp CCTTACATCCAACTAAGAACTTGGTGCCTCAGGCAATaGCTCTACCTGATTGGCTTAGGCATGCTCAGTGGG +
Preference number: 3 (lower is better)
Translates to: PYIQLRTWCLRQ*LYLIGLGMLSG
Trigger: CCCACTGAGCATGCCTAAGCCAATCAGGTAGAGTCATTGCCTGAGGCACCAAGTTCTTAGTTGGATGTAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR GCA 72 bp TTCCTGTGTGGTGACTTTCATCTCCAGCTCACTCCATaGTTGAGGTCACATTCTCTTGAGAGCAGGGCCATT +
Preference number: 3 (lower is better)
Translates to: FLCGDFHLQLTP*LRSHSLESRAI
Trigger: AATGGCCCTGCTCTCAAGAGAATGTGACCTCAAGCATGGAGTGAGCTGGAGATGAAAGTCACCACACAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR CCA 72 bp CTCTTCAAAACAATACTCTTAGATCTTGGGTTGTGGTaGAACATCTCAGCTCCATCCCCGAGGGTCAGGGAG +
Preference number: 3 (lower is better)
Translates to: LFKTILLDLGLW*NISAPSPRVRE
Trigger: CTCCCTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGTATTGTTTTGAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CCA 72 bp TTCAGATGGACTGGAAAGCTAACCTCTCCTTGGCTCTaGGTAAAAGTCAGTCTGTTGAGCCCAGCTCTGTGT +
Preference number: 3 (lower is better)
Translates to: FRWTGKLTSPWL*VKVSLLSPALC
Trigger: ACACAGAGCTGGGCTCAACAGACTGACTTTTACCCAGAGCCAAGGAGAGGTTAGCTTTCCAGTCCATCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR CCA 72 bp AGGTGTCTGGCAGTTTCAGGTCTTCATCTGTTCAGATaGACTGGAAAGCTAACCTCTCCTTGGCTCTGGGTA +
Preference number: 3 (lower is better)
Translates to: RCLAVSGLHLFR*TGKLTSPWLWV
Trigger: TACCCAGAGCCAAGGAGAGGTTAGCTTTCCAGTCCATCTGAACAGATGAAGACCTGAAACTGCCAGACACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR CAA 90 bp AGTACAAAGCCACTGTGGAATCCAGGCATGGTGGTATATACCTGTCAGTGGCAGGTTTTGCCTTTGGAATaGCTTGCCCATGTGACCCTA +
Preference number: 3 (lower is better)
Translates to: STKPLWNPGMVVYTCQWQVLPLE*LAHVTL
Trigger: TAGGGTCACATGGGCAAGCAATTCCAAAGGCAAAAC...CTGCCACTGACAGGTATATACCACCATGCCTGGATTCCACAGTGGCTTTGTACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
3UTR CCA 72 bp TGTCTCTTCAAAACAATACTCTTAGATCTTGGGTTGTaGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGG +
Preference number: 3 (lower is better)
Translates to: CLFKTILLDLGL*WNISAPSPRVR
Trigger: CCTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGTATTGTTTTGAAGAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CCA 72 bp CCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTaGTTGAACTTGTCCATGTGTCCCTGGAGCTGGCTT +
Preference number: 3 (lower is better)
Translates to: PLMTLPLPILWH*LNLSMCPWSWL
Trigger: AAGCCAGCTCCAGGGACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CCA 72 bp AACAGGCCTTTAATGACCCTCCCACTCCCAATTTTATaGCATTGGTTGAACTTGTCCATGTGTCCCTGGAGC +
Preference number: 3 (lower is better)
Translates to: NRPLMTLPLPIL*HWLNLSMCPWS
Trigger: GCTCCAGGGACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGCCTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR-3UTR CAA 90 bp GAGAAAGCTGAATTTCAGAGAGACGACACGACACACGGCAAGTCATGGCTTGAGTTTCTCTGTCGTCCTTaGTGCTCAGCAAACAAGAGA +
Preference number: 3 (lower is better)
Translates to: EKAEFQRDDTTHGKSWLEFLCRP*CSANKR
Trigger: TCTCTTGTTTGCTGAGCACAAAGGACGACAGAGAAA...CTCAAGCCATGACTTGCCGTGTGTCGTGTCGTCTCTCTGAAATTCAGCTTTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
3UTR-3UTR CAA 90 bp TCCTTGACTCCCATGGCTTCATTTATCAAATGGGTTTCTCCTCCTCTTCCTCCTAAAGCTAACCTCTCCTaGGCTCTGGGTAAAAGTCAG +
Preference number: 3 (lower is better)
Translates to: SLTPMASFIKWVSPPLPPKANLS*ALGKSQ
Trigger: CTGACTTTTACCCAGAGCCAAGGAGAGGTTAGCTTT...AGGAGGAAGAGGAGGAGAAACCCATTTGATAAATGAAGCCATGGGAGTCAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR-3UTR CAA 90 bp TCTGTGTTTGGATTTGCCTCCCCTGAGCATATCTACTTTGGAGTCTCACATGTGACAGTCAGCCTCTTGTaGCAATGTCAGAAGGTTGGA +
Preference number: 3 (lower is better)
Translates to: SVFGFASPEHIYFGVSHVTVSLL*QCQKVG
Trigger: TCCAACCTTCTGACATTGCAACAAGAGGCTGACTGT...CACATGTGAGACTCCAAAGTAGATATGCTCAGGGGAGGCAAATCCAAACACAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR GCA 72 bp AGTCAGCCTCTTGTTGCAATGTCAGAAGGTTGGACATaGCTGGTAGAAGAGTCACTCAATGTGCTTAGCTCA +
Preference number: 3 (lower is better)
Translates to: SQPLVAMSEGWT*LVEESLNVLSS
Trigger: TGAGCTAAGCACATTGAGTGACTCTTCTACCAGGCATGTCCAACCTTCTGACATTGCAACAAGAGGCTGACT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR CCA 72 bp TCTGGCAGTTTCAGGTCTTCATCTGTTCAGATGGACTaGAAAGCTAACCTCTCCTTGGCTCTGGGTAAAAGT +
Preference number: 3 (lower is better)
Translates to: SGSFRSSSVQMD*KANLSLALGKS
Trigger: ACTTTTACCCAGAGCCAAGGAGAGGTTAGCTTTCCAGTCCATCTGAACAGATGAAGACCTGAAACTGCCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR CCA 72 bp GAACACTTGGCCTCAAGACCTCCCCCAACCCAAAGCTaGCTAGTAATATCGCAATTCTCCTTTTGTGAAACA +
Preference number: 3 (lower is better)
Translates to: EHLASRPPPTQS*LVISQFSFCET
Trigger: TGTTTCACAAAAGGAGAATTGCGATATTACTAGCCAGCTTTGGGTTGGGGGAGGTCTTGAGGCCAAGTGTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR CCA 72 bp GAATTTCAGAGAGACGACACGACACACGGCAAGTCATaGCTTGAGAATGTAGTAATGAGTCACTGGAACCCA +
Preference number: 3 (lower is better)
Translates to: EFQRDDTTHGKS*LENVVMSHWNP
Trigger: TGGGTTCCAGTGACTCATTACTACATTCTCAAGCCATGACTTGCCGTGTGTCGTGTCGTCTCTCTGAAATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
3UTR CCA 72 bp TTAATAGTACAAAGCCACTGTGGAATCCAGGCATGGTaGTATATACCTGTCAGTGGCAGTGGAAAGGCTGAG +
Preference number: 3 (lower is better)
Translates to: LIVQSHCGIQAW*YIPVSGSGKAE
Trigger: CTCAGCCTTTCCACTGCCACTGACAGGTATATACCACCATGCCTGGATTCCACAGTGGCTTTGTACTATTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
3UTR CCA 72 bp TTAGGTTCCTTGACTCCCATGGCTTCATTTATCAAATaGGTTTCTCCTCCTCTTCCTCCTCCTCCTTTTGGT +
Preference number: 3 (lower is better)
Translates to: LGSLTPMASFIK*VSPPLPPPPFG
Trigger: ACCAAAAGGAGGAGGAGGAAGAGGAGGAGAAACCCATTTGATAAATGAAGCCATGGGAGTCAAGGAACCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR CCA 72 bp TCTTTAATAGTACAAAGCCACTGTGGAATCCAGGCATaGTGGTATATACCTGTCAGTGGCAGTGGAAAGGCT +
Preference number: 3 (lower is better)
Translates to: SLIVQSHCGIQA*WYIPVSGSGKA
Trigger: AGCCTTTCCACTGCCACTGACAGGTATATACCACCATGCCTGGATTCCACAGTGGCTTTGTACTATTAAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
3UTR CCA 72 bp AAACTCCATGACGTCTTTAATAGTACAAAGCCACTGTaGAATCCAGGCATGGTGGTATATACCTGTCAGTGG +
Preference number: 3 (lower is better)
Translates to: KLHDVFNSTKPL*NPGMVVYTCQW
Trigger: CCACTGACAGGTATATACCACCATGCCTGGATTCCACAGTGGCTTTGTACTATTAAAGACGTCATGGAGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
3UTR-3UTR CAA 90 bp TCCTTGACTCCCATGGCTTCATTTATCAAATGGGTTTCTCCTCCTCTTCCTCCTAATGGAACAATGAACTaGTGTCCTATCATGCTTTTG +
Preference number: 3 (lower is better)
Translates to: SLTPMASFIKWVSPPLPPNGTMN*CPIMLL
Trigger: CAAAAGCATGATAGGACACAAGTTCATTGTTCCATT...AGGAGGAAGAGGAGGAGAAACCCATTTGATAAATGAAGCCATGGGAGTCAAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
3UTR TCA 72 bp TTTTTCACTAAACATGTTTCCATCCCTGTGGTACCATaGGCCATTGCTTCATTTCTATTTATAGTTGAGAAA +
Preference number: 3 (lower is better)
Translates to: FFTKHVSIPVVP*AIASFLFIVEK
Trigger: TTTCTCAACTATAAATAGAAATGAAGCAATGGCTCATGGTACCACAGGGATGGAAACATGTTTAGTGAAAAA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR CCA 90 bp GTGTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTAGCCTCGTCGGCCAGCTaGAAGCAGCGCCCGTCCACC +
Preference number: 4 (lower is better)
Translates to: VSLELAWLLPVELRSPVVASSAS*KQRPST
Trigger: GGTGGACGGGCGCTGCTTCCAGCTGGCCGACGAGGC...TACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGACAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp CCCGAGGGTCAGGGAGCAGCTGGGGCCAGGAACCCCTTCATTAGCCAGTCCTGGGCAGGATCTTCTCCATaGCAGCCACCTCAGGCACGC +
Preference number: 4 (lower is better)
Translates to: PEGQGAAGARNPFISQSWAGSSP*QPPQAR
Trigger: GCGTGCCTGAGGTGGCTGTCATGGAGAAGATCCTGC...CCAGGACTGGCTAATGAAGGGGTTCCTGGCCCCAGCTGCTCCCTGACCCTCGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GGCAGGGATGTGTGGTTAAGGAGAGCGGCCAATGAGAGCCCAGTCCCAATCCCTGCCTCGTCGGCCAGCTaGAAGCAGCGCCCGTCCACC +
Preference number: 4 (lower is better)
Translates to: GRDVWLRRAANESPVPIPASSAS*KQRPST
Trigger: GGTGGACGGGCGCTGCTTCCAGCTGGCCGACGAGGC...AGGGATTGGGACTGGGCTCTCATTGGCCGCTCTCCTTAACCACACATCCCTGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp CTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTAGGCCCTCAGGCACGCTGGTaGTCACACCCAGGTCGGTGG +
Preference number: 4 (lower is better)
Translates to: LELAWLLPVELRSPVVLGPQARW*SHPGRW
Trigger: CCACCGACCTGGGTGTGACCACCAGCGTGCCTGAGG...GCCTAGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp AGAGCGGCCAATGAGAGCCCAGTCCCAATCCCTCTAGCCTCCTCTCAGGAGATCGCTTCTCCAGGACACTaGTGCCCCGGCGTGGGATGC +
Preference number: 4 (lower is better)
Translates to: RAANESPVPIPLASSQEIASPGH*CPGVGC
Trigger: GCATCCCACGCCGGGGCATCAGTGTCCTGGAGAAGC...GATCTCCTGAGAGGAGGCTAGAGGGATTGGGACTGGGCTCTCATTGGCCGCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056950.14
CDS-3UTR TCA 90 bp CCCCAAACAGGCTCCCCACAAGCCCAGGTCTGTTCTGGTAGCCCTATGAACACCGCTTCTCCAGGACACTaGTGCCCCGGCGTGGGATGC +
Preference number: 4 (lower is better)
Translates to: PQTGSPQAQVCSGSPMNTASPGH*CPGVGC
Trigger: GCATCCCACGCCGGGGCATCAGTGTCCTGGAGAAGC...GGTGTTCATAGGGCTACCAGAACAGACCTGGGCTTGTGGGGAGCCTGTTTGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
CDS-3UTR CCA 90 bp CCTGAGAGCACAGAAAGGCTGGCAAAGCTGCGCCTTGCCTGTACCAGGGCCAGGTTGGCAGCCTCTGCCTaGCCTAGACCTAGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: PESTERLAKLRLACTRARLAASA*PRPSCS
Trigger: GCTGCAGCTAGGTCTAGGCCAGGCAGAGGCTGCCAA...CCTGGCCCTGGTACAGGCAAGGCGCAGCTTTGCCAGCCTTTCTGTGCTCTCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR CCA 90 bp GGCAGGGATGTGTGGTTAAGGAGAGCGGCCAATGAGAGCCCAGTCCCAATCCCTCCACCTCAGGCACGCTaGTGGTCACACCCAGGTCGG +
Preference number: 4 (lower is better)
Translates to: GRDVWLRRAANESPVPIPPPQAR*WSHPGR
Trigger: CCGACCTGGGTGTGACCACCAGCGTGCCTGAGGTGG...AGGGATTGGGACTGGGCTCTCATTGGCCGCTCTCCTTAACCACACATCCCTGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp CTAGATGGCAGGGATGTGTGGTTAAGGAGAGCGGCCAATGAGAGCCCAGTCCCACAGGGGCTGGGCTTCTaGGTGGCTCTGCAGAGCCTC +
Preference number: 4 (lower is better)
Translates to: LDGRDVWLRRAANESPVPQGLGF*VALQSL
Trigger: GAGGCTCTGCAGAGCCACTCAGAAGCCCAGCCCCTG...TGGGACTGGGCTCTCATTGGCCGCTCTCCTTAACCACACATCCCTGCCATCTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp ACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGCCGGAGGCTGGAGGATaGAGGGGTCCCAGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: TLRSWVVVEHLSSIPEGQPEAGG*RGPRGW
Trigger: CCAGCCCCTGGGACCCCTGCATCCTCCAGCCTCCGG...CTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp GGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGGGAGCAGCTGGGGCAGGAGGCACTGGTATaGTGTCAGCATGGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: GLWWNISAPSPRVREQLGQEALV*CQHGWL
Trigger: AAGCCAGCCATGCTGACAGCATACCAGTGCCTCCTG...CCCCAGCTGCTCCCTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp GTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTCTTGGAGGTGCTGCATaGCAGCTTGCCGGACAGGAC +
Preference number: 4 (lower is better)
Translates to: VPGAGLVASSGAQEPRCTLGGAA*QLAGQD
Trigger: GTCCTGTCCGGCAAGCTGGCATGCAGCACCTCCAAG...AGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp GTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTGCACTGTGCACACAGTaGCTGGGCTGCTGTGTCTGC +
Preference number: 4 (lower is better)
Translates to: VPGAGLVASSGAQEPRCTALCTQ*LGCCVC
Trigger: GCAGACACAGCAGCCCAGGCACTGTGTGCACAGTGC...AGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp ACTTGTCCATGTGTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGAGGGGTCCCAGGGGCTaGGCTTCTGAGTGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: TCPCVPGAGLVASSGAQERGPRG*ASEWLC
Trigger: GCAGAGCCACTCAGAAGCCCAGCCCCTGGGACCCCT...CTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGACACATGGACAAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp CTAGATGGCAGGGATGTGTGGTTAAGGAGAGCGGCCAATGAGAGCCCAGTCCCAGCCCAGGCCTACAGCTaGGCGAGGGAGACTCTCGCA +
Preference number: 4 (lower is better)
Translates to: LDGRDVWLRRAANESPVPAQAYS*ARETLA
Trigger: TGCGAGAGTCTCCCTCGCCCAGCTGTAGGCCTGGGC...TGGGACTGGGCTCTCATTGGCCGCTCTCCTTAACCACACATCCCTGCCATCTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTCAGAAATGCGCCTCCTaGGAGGGGCTGCTGGAAGAG +
Preference number: 4 (lower is better)
Translates to: VPGAGLVASSGAQEPRCTQKCAS*EGLLEE
Trigger: CTCTTCCAGCAGCCCCTCCCAGGAGGCGCATTTCTG...AGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGGGAGCAGCTGGGGCTTCTTCCTTGGGGGTaGTACTGGGGGTTGTTTGGC +
Preference number: 4 (lower is better)
Translates to: GLWWNISAPSPRVREQLGLLPWG*YWGLFG
Trigger: GCCAAACAACCCCCAGTACCACCCCCAAGGAAGAAG...CCCCAGCTGCTCCCTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp TGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTAGGCACTCTGGTAGCTCCACCTCAGGCACGCTaGTGGTCACACCCAGGTCGG +
Preference number: 4 (lower is better)
Translates to: WLLPVELRSPVVLGTLVAPPQAR*WSHPGR
Trigger: CCGACCTGGGTGTGACCACCAGCGTGCCTGAGGTGG...AGCTACCAGAGTGCCTAGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GTGTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTAGTTCCCAGCGATGGATaGAGTCCTGCACCTCCACGC +
Preference number: 4 (lower is better)
Translates to: VSLELAWLLPVELRSPVVVPSDG*SPAPPR
Trigger: GCGTGGAGGTGCAGGACTCCATCCATCGCTGGGAAC...TACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GTGTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTATGTGCACACAGTGCCTaGGCTGCTGTGTCTGCCCGT +
Preference number: 4 (lower is better)
Translates to: VSLELAWLLPVELRSPVVCAHSA*AAVSAR
Trigger: ACGGGCAGACACAGCAGCCCAGGCACTGTGTGCACA...TACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CAA 72 bp AGACTCGGAGGACTCAGAAGCCGGGCTCAGAGCGGCTaGCAGAACACAGAAGGCTGCAGAGCAGAGCAGAGG +
Preference number: 4 (lower is better)
Translates to: RLGGLRSRAQSG*QNTEGCRAEQR
Trigger: CCTCTGCTCTGCTCTGCAGCCTTCTGTGTTCTGCAAGCCGCTCTGAGCCCGGCTTCTGAGTCCTCCGAGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR TCA 90 bp GTGTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTAGGGGCAGCCGTAGAGTaGAGGGCAGTAAGTCTCTAC +
Preference number: 4 (lower is better)
Translates to: VSLELAWLLPVELRSPVVGAAVE*RAVSLY
Trigger: GTAGAGACTTACTGCCCTTCACTCTACGGCTGCCCC...TACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp GTGAGCAGGGTTGGGCTTGTTTGCTGCAGCTGGCAAGAGCCTCTTCCACCTGAGGGCTCTCCAAGGGACTaGGAAGGGTTGAGGCCAGCT +
Preference number: 4 (lower is better)
Translates to: VSRVGLVCCSWQEPLPPEGSPRD*EGLRPA
Trigger: AGCTGGCCTCAACCCTTCTCAGTCCCTTGGAGAGCC...CTCAGGTGGAAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGCTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp GTGAGCAGGGTTGGGCTTGTTTGCTGCAGCTGGCAAGAGCCTCTTCCACCTGAGCTTGAGCTGCTGCAGTaGGCCATCCCGGCTGTGGAT +
Preference number: 4 (lower is better)
Translates to: VSRVGLVCCSWQEPLPPELELLQ*AIPAVD
Trigger: ATCCACAGCCGGGATGGCTCACTGCAGCAGCTCAAG...CTCAGGTGGAAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGCTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp GTGAGCAGGGTTGGGCTTGTTTGCTGCAGCTGGCAAGAGCCTCTTCCACCTGAGGCAGGGCGGGGTCCATaGGCTCCATCATGTACTCCA +
Preference number: 4 (lower is better)
Translates to: VSRVGLVCCSWQEPLPPEAGRGP*APSCTP
Trigger: TGGAGTACATGATGGAGCTCATGGACCCCGCCCTGC...CTCAGGTGGAAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGCTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp GTGAGCAGGGTTGGGCTTGTTTGCTGCAGCTGGCAAGAGCCTCTTCCACCTGAGCTTGGAGGTGCTGCATaGCAGCTTGCCGGACAGGAC +
Preference number: 4 (lower is better)
Translates to: VSRVGLVCCSWQEPLPPELGGAA*QLAGQD
Trigger: GTCCTGTCCGGCAAGCTGGCATGCAGCACCTCCAAG...CTCAGGTGGAAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGCTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp CTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTAGGCTTCTCCTTGAGCTGCTaGAGTGAGCCATCCCGGCTG +
Preference number: 4 (lower is better)
Translates to: LELAWLLPVELRSPVVLGFSLSC*SEPSRL
Trigger: CAGCCGGGATGGCTCACTGCAGCAGCTCAAGGAGAA...GCCTAGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp AGAGCGGCCAATGAGAGCCCAGTCCCAATCCCTCTAGCCTCCTCTCAGGAGATCGAACCCTCTCCTAACTaGAGGGCGGGGTCCATGAGC +
Preference number: 4 (lower is better)
Translates to: RAANESPVPIPLASSQEIEPSPN*RAGSMS
Trigger: GCTCATGGACCCCGCCCTGCAGTTAGGAGAGGGTTC...GATCTCCTGAGAGGAGGCTAGAGGGATTGGGACTGGGCTCTCATTGGCCGCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp GCAGGGTTGGGCTTGTTTGCTGCAGCTGGCAAGAGCCTCTTCCACCTGAGCCTTGCACTGTGCACACAGTaGCTGGGCTGCTGTGTCTGC +
Preference number: 4 (lower is better)
Translates to: AGLGLFAAAGKSLFHLSLALCTQ*LGCCVC
Trigger: GCAGACACAGCAGCCCAGGCACTGTGTGCACAGTGC...AAGGCTCAGGTGGAAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp GCAGGGTTGGGCTTGTTTGCTGCAGCTGGCAAGAGCCTCTTCCACCTGAGCCTTCTTCTCAGCGCACTGTaGACACAGTGCCTGGGCTGC +
Preference number: 4 (lower is better)
Translates to: AGLGLFAAAGKSLFHLSLLLSAL*TQCLGC
Trigger: GCAGCCCAGGCACTGTGTGCACAGTGCGCTGAGAAG...AAGGCTCAGGTGGAAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp AGAGCGGCCAATGAGAGCCCAGTCCCAATCCCTCTAGCCTCCTCTCAGGAGATCCAGAAATGCGCCTCCTaGGAGGGGCTGCTGGAAGAG +
Preference number: 4 (lower is better)
Translates to: RAANESPVPIPLASSQEIQKCAS*EGLLEE
Trigger: CTCTTCCAGCAGCCCCTCCCAGGAGGCGCATTTCTG...GATCTCCTGAGAGGAGGCTAGAGGGATTGGGACTGGGCTCTCATTGGCCGCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp TGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTAGGCACTCTGGTAGCTCCTGGCTTTGCTCCGTaGTCCTTGGAGGCCTGTCCC +
Preference number: 4 (lower is better)
Translates to: WLLPVELRSPVVLGTLVAPGFAP*SLEACP
Trigger: GGGACAGGCCTCCAAGGACCACGGAGCAAAGCCAGG...AGCTACCAGAGTGCCTAGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp ACTTGTCCATGTGTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCACCCAGGTCGGTGGTaGTGGTGGCCAGGACCACTA +
Preference number: 4 (lower is better)
Translates to: TCPCVPGAGLVASSGAQEHPGRW*WWPGPL
Trigger: TAGTGGTCCTGGCCACCACCACCACCGACCTGGGTG...CTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGACACATGGACAAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GGCAGGGATGTGTGGTTAAGGAGAGCGGCCAATGAGAGCCCAGTCCCAATCCCTTGTGCACACAGTGCCTaGGCTGCTGTGTCTGCCCGT +
Preference number: 4 (lower is better)
Translates to: GRDVWLRRAANESPVPIPCAHSA*AAVSAR
Trigger: ACGGGCAGACACAGCAGCCCAGGCACTGTGTGCACA...AGGGATTGGGACTGGGCTCTCATTGGCCGCTCTCCTTAACCACACATCCCTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GAACCTGGTGTGAGCAGGGTTGGGCTTGTTTGCTGCAGCTGGCAAGAGCCTCTTTCCTTGCCGCTGTCCTaGGGCCGGTACACGAAGTGG +
Preference number: 4 (lower is better)
Translates to: EPGVSRVGLVCCSWQEPLSLPLS*GRYTKW
Trigger: CCACTTCGTGTACCGGCCCCAGGACAGCGGCAAGGA...AAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGCTCACACCAGGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp AGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGGGAGCATCCTTGCCGCTGTCCTaGGGCCGGTACACGAAGTGG +
Preference number: 4 (lower is better)
Translates to: RSWVVVEHLSSIPEGQGASLPLS*GRYTKW
Trigger: CCACTTCGTGTACCGGCCCCAGGACAGCGGCAAGGA...TGCTCCCTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp AGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGGGAGCAGGCTCTCCAAGGGACTaGGAAGGGTTGAGGCCAGCT +
Preference number: 4 (lower is better)
Translates to: RSWVVVEHLSSIPEGQGAGSPRD*EGLRPA
Trigger: AGCTGGCCTCAACCCTTCTCAGTCCCTTGGAGAGCC...TGCTCCCTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp ACTTGTCCATGTGTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGGCAGGGCGGGGTCCATaGGCTCCATCATGTACTCCA +
Preference number: 4 (lower is better)
Translates to: TCPCVPGAGLVASSGAQEAGRGP*APSCTP
Trigger: TGGAGTACATGATGGAGCTCATGGACCCCGCCCTGC...CTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGACACATGGACAAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp TGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTAGGCACTCTGGTAGCTTGGCCTAGACCTAGCTaGAGCCACACAGGGCAGGTC +
Preference number: 4 (lower is better)
Translates to: WLLPVELRSPVVLGTLVAWPRPS*SHTGQV
Trigger: GACCTGCCCTGTGTGGCTGCAGCTAGGTCTAGGCCA...AGCTACCAGAGTGCCTAGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056950.14
CDS-3UTR GCA 90 bp CCCCAAACAGGCTCCCCACAAGCCCAGGTCTGTTCTGGTAGCCCTATGAACACCCCAGCCATCTCCTGCTaGAGGATCTTGGCAGCCTCT +
Preference number: 4 (lower is better)
Translates to: PQTGSPQAQVCSGSPMNTPAISC*RILAAS
Trigger: AGAGGCTGCCAAGATCCTGCAGCAGGAGATGGCTGG...GGTGTTCATAGGGCTACCAGAACAGACCTGGGCTTGTGGGGAGCCTGTTTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
CDS-3UTR GCA 90 bp GGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGGGAGCAGCTGGGGACACACAGCACCAATTaGTTCAGGTTGTTGTCCCGG +
Preference number: 4 (lower is better)
Translates to: GLWWNISAPSPRVREQLGTHSTN*FRLLSR
Trigger: CCGGGACAACAACCTGAAGCAATTGGTGCTGTGTGT...CCCCAGCTGCTCCCTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp GTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTGGAGCTCTTGTCCTGTaGCAGCTCCACCACCTTCTT +
Preference number: 4 (lower is better)
Translates to: VPGAGLVASSGAQEPRCTGALVL*QLHHLL
Trigger: AAGAAGGTGGTGGAGCTGGCACAGGACAAGAGCTCC...AGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp GAACCTGGTGTGAGCAGGGTTGGGCTTGTTTGCTGCAGCTGGCAAGAGCCTCTTGAACCCTCTCCTAACTaGAGGGCGGGGTCCATGAGC +
Preference number: 4 (lower is better)
Translates to: EPGVSRVGLVCCSWQEPLEPSPN*RAGSMS
Trigger: GCTCATGGACCCCGCCCTGCAGTTAGGAGAGGGTTC...AAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGCTCACACCAGGTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp CTAGATGGCAGGGATGTGTGGTTAAGGAGAGCGGCCAATGAGAGCCCAGTCCCATTGGCAGCCTCTGCCTaGCCTAGACCTAGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: LDGRDVWLRRAANESPVPLAASA*PRPSCS
Trigger: GCTGCAGCTAGGTCTAGGCCAGGCAGAGGCTGCCAA...TGGGACTGGGCTCTCATTGGCCGCTCTCCTTAACCACACATCCCTGCCATCTAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056950.14
CDS-3UTR CCA 90 bp GAGACAGGACCAGGAGAATTGCCTGAGGAACCTGGTGTGAGCAGGGTTGGGCTTGGAGGGGGAGGGGCTTaGTGCAAGGGATTGGGAGTT +
Preference number: 4 (lower is better)
Translates to: ETGPGELPEEPGVSRVGLGGGGA*CKGLGV
Trigger: AACTCCCAATCCCTTGCACCAAGCCCCTCCCCCTCC...AAGCCCAACCCTGCTCACACCAGGTTCCTCAGGCAATTCTCCTGGTCCTGTCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp ACTTGTCCATGTGTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGTTGCTCCGTGGTCCTTaGAGGCCTGTCCCCAAGGCT +
Preference number: 4 (lower is better)
Translates to: TCPCVPGAGLVASSGAQELLRGP*RPVPKA
Trigger: AGCCTTGGGGACAGGCCTCCAAGGACCACGGAGCAA...CTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGACACATGGACAAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp CTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTAGGCCAGCATGGCTGGCTTTaGCCTCTGTGTCCTGGCTTT +
Preference number: 4 (lower is better)
Translates to: LELAWLLPVELRSPVVLGQHGWL*PLCPGF
Trigger: AAAGCCAGGACACAGAGGCCAAAGCCAGCCATGCTG...GCCTAGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GTGTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTATGCTGTCAGCATGGCTaGCTTTGGCCTCTGTGTCCT +
Preference number: 4 (lower is better)
Translates to: VSLELAWLLPVELRSPVVCCQHG*LWPLCP
Trigger: AGGACACAGAGGCCAAAGCCAGCCATGCTGACAGCA...TACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGACAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp CTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTAGGCCTTCCCAGGAGGCACTaGTATGCTGTCAGCATGGCT +
Preference number: 4 (lower is better)
Translates to: LELAWLLPVELRSPVVLGLPRRH*YAVSMA
Trigger: AGCCATGCTGACAGCATACCAGTGCCTCCTGGGAAG...GCCTAGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTCTTCCCAGGAGGCACTaGTATGCTGTCAGCATGGCT +
Preference number: 4 (lower is better)
Translates to: VPGAGLVASSGAQEPRCTLPRRH*YAVSMA
Trigger: AGCCATGCTGACAGCATACCAGTGCCTCCTGGGAAG...AGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp ACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGCCTCAGGCACGCTGGTaGTCACACCCAGGTCGGTGG +
Preference number: 4 (lower is better)
Translates to: TLRSWVVVEHLSSIPEGQPQARW*SHPGRW
Trigger: CCACCGACCTGGGTGTGACCACCAGCGTGCCTGAGG...CTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp ATACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCGCATGGGGTGCAAGGTaGGAGGTGGGCGTTAGGGGG +
Preference number: 4 (lower is better)
Translates to: ILLDLGLWWNISAPSPRVAWGAR*EVGVRG
Trigger: CCCCCTAACGCCCACCTCTCACCTTGCACCCCATGC...GACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGTAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp GTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTGGGAGGAAGGTTGAGTaGTGCTGTCCTAGAAATGCC +
Preference number: 4 (lower is better)
Translates to: VPGAGLVASSGAQEPRCTGRKVE*CCPRNA
Trigger: GGCATTTCTAGGACAGCATCACTCAACCTTCCTCCC...AGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp CCCGAGGGTCAGGGAGCAGCTGGGGCCAGGAACCCCTTCATTAGCCAGTCCTGGCTTGTCCAGGATCATTaGGGGTTTCTTCTTCACGTT +
Preference number: 4 (lower is better)
Translates to: PEGQGAAGARNPFISQSWLVQDH*GFLLHV
Trigger: AACGTGAAGAAGAAACCCTCAATGATCCTGGACAAG...CCAGGACTGGCTAATGAAGGGGTTCCTGGCCCCAGCTGCTCCCTGACCCTCGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp ATACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCGCCCGGTGCATGGGGTaGAAGGTGAGAGGTGGGCGT +
Preference number: 4 (lower is better)
Translates to: ILLDLGLWWNISAPSPRVARCMG*KVRGGR
Trigger: ACGCCCACCTCTCACCTTGCACCCCATGCACCGGGC...GACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp GGCAGGGATGTGTGGTTAAGGAGAGCGGCCAATGAGAGCCCAGTCCCAATCCCTGGAGCTCTTGTCCTGTaGCAGCTCCACCACCTTCTT +
Preference number: 4 (lower is better)
Translates to: GRDVWLRRAANESPVPIPGALVL*QLHHLL
Trigger: AAGAAGGTGGTGGAGCTGGCACAGGACAAGAGCTCC...AGGGATTGGGACTGGGCTCTCATTGGCCGCTCTCCTTAACCACACATCCCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp AGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGGGAGCATTCTCCTTGAGCTGCTaGAGTGAGCCATCCCGGCTG +
Preference number: 4 (lower is better)
Translates to: RSWVVVEHLSSIPEGQGAFSLSC*SEPSRL
Trigger: CAGCCGGGATGGCTCACTGCAGCAGCTCAAGGAGAA...TGCTCCCTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp ATACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCGCCCAGGCCTACAGCTaGGCGAGGGAGACTCTCGCA +
Preference number: 4 (lower is better)
Translates to: ILLDLGLWWNISAPSPRVAQAYS*ARETLA
Trigger: TGCGAGAGTCTCCCTCGCCCAGCTGTAGGCCTGGGC...GACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp TGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTAGGCACTCTGGTAGCTGCAGCATCTCAGTGCTaGATGTCTGGCGGGCCATCA +
Preference number: 4 (lower is better)
Translates to: WLLPVELRSPVVLGTLVAAASQC*MSGGPS
Trigger: TGATGGCCCGCCAGACATCCAGCACTGAGATGCTGC...AGCTACCAGAGTGCCTAGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp AGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGGGAGCAGCAGCATCTCAGTGCTaGATGTCTGGCGGGCCATCA +
Preference number: 4 (lower is better)
Translates to: RSWVVVEHLSSIPEGQGAAASQC*MSGGPS
Trigger: TGATGGCCCGCCAGACATCCAGCACTGAGATGCTGC...TGCTCCCTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp AGAGCGGCCAATGAGAGCCCAGTCCCAATCCCTCTAGCCTCCTCTCAGGAGATCGGGCTCCGTAGGTGGTaGTCAGATAGTAGGAACCCT +
Preference number: 4 (lower is better)
Translates to: RAANESPVPIPLASSQEIGLRRW*SDSRNP
Trigger: AGGGTTCCTACTATCTGACCACCACCTACGGAGCCC...GATCTCCTGAGAGGAGGCTAGAGGGATTGGGACTGGGCTCTCATTGGCCGCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp CCCGAGGGTCAGGGAGCAGCTGGGGCCAGGAACCCCTTCATTAGCCAGTCCTGGAGAACGCAATCAGTCTaGAGATGTCCTCAAACACAA +
Preference number: 4 (lower is better)
Translates to: PEGQGAAGARNPFISQSWRTQSV*RCPQTQ
Trigger: TTGTGTTTGAGGACATCTTCAGACTGATTGCGTTCT...CCAGGACTGGCTAATGAAGGGGTTCCTGGCCCCAGCTGCTCCCTGACCCTCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp GACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGTCCCTGCAGGGGCTGGGCTTCTaGGTGGCTCTGCAGAGCCTC +
Preference number: 4 (lower is better)
Translates to: DPPTPNFMALVELVHVSLQGLGF*VALQSL
Trigger: GAGGCTCTGCAGAGCCACTCAGAAGCCCAGCCCCTG...CAGGGACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp ACTTGTCCATGTGTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCTAGCTGGTTCTCCTTaGGCTGCTGCAGTGAGCCAT +
Preference number: 4 (lower is better)
Translates to: TCPCVPGAGLVASSGAQELAGSP*AAAVSH
Trigger: ATGGCTCACTGCAGCAGCTCAAGGAGAACCAGCTAG...CTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGACACATGGACAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp ACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGGCAGGATCTTCTCCATaGCAGCCACCTCAGGCACGC +
Preference number: 4 (lower is better)
Translates to: TLRSWVVVEHLSSIPEGQAGSSP*QPPQAR
Trigger: GCGTGCCTGAGGTGGCTGTCATGGAGAAGATCCTGC...CTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp CTAGATGGCAGGGATGTGTGGTTAAGGAGAGCGGCCAATGAGAGCCCAGTCCCAGGTAGGACACACAGATaGAGTCCTGCACAGAGGAGC +
Preference number: 4 (lower is better)
Translates to: LDGRDVWLRRAANESPVPGRTHR*SPAQRS
Trigger: GCTCCTCTGTGCAGGACTTCATCTGTGTGTCCTACC...TGGGACTGGGCTCTCATTGGCCGCTCTCCTTAACCACACATCCCTGCCATCTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp AGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGGGAGCAGGTAGGACACACAGATaGAGTCCTGCACAGAGGAGC +
Preference number: 4 (lower is better)
Translates to: RSWVVVEHLSSIPEGQGAGRTHR*SPAQRS
Trigger: GCTCCTCTGTGCAGGACTTCATCTGTGTGTCCTACC...TGCTCCCTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp CCTCTTCCACCTGAGCCTTGGTTTCCCTTACATCCAACTAAGAACTTGGTGCCTGCCCGGTGCATGGGGTaGAAGGTGAGAGGTGGGCGT +
Preference number: 4 (lower is better)
Translates to: PLPPEPWFPLHPTKNLVPARCMG*KVRGGR
Trigger: ACGCCCACCTCTCACCTTGCACCCCATGCACCGGGC...AGGCACCAAGTTCTTAGTTGGATGTAAGGGAAACCAAGGCTCAGGTGGAAGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp GGCAGGGATGTGTGGTTAAGGAGAGCGGCCAATGAGAGCCCAGTCCCAATCCCTCTGTTTCTCAGAGGATaGCTCCTGTATGGGGCTCTC +
Preference number: 4 (lower is better)
Translates to: GRDVWLRRAANESPVPIPLFLRG*LLYGAL
Trigger: GAGAGCCCCATACAGGAGGCATCCTCTGAGAAACAG...AGGGATTGGGACTGGGCTCTCATTGGCCGCTCTCCTTAACCACACATCCCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp ACACTGATGACCTGTGGTGTTTCCATCACAGAACAGGCCTTTAATGACCCTCCCAGGGGTCCCAGGGGCTaGGCTTCTGAGTGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: TLMTCGVSITEQAFNDPPRGPRG*ASEWLC
Trigger: GCAGAGCCACTCAGAAGCCCAGCCCCTGGGACCCCT...GGGAGGGTCATTAAAGGCCTGTTCTGTGATGGAAACACCACAGGTCATCAGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp ACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGGACCCGCTTCTTCCTTaGGGGTGGTACTGGGGGTTG +
Preference number: 4 (lower is better)
Translates to: TLRSWVVVEHLSSIPEGQDPLLP*GWYWGL
Trigger: CAACCCCCAGTACCACCCCCAAGGAAGAAGCGGGTC...CTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GTGAGCAGGGTTGGGCTTGTTTGCTGCAGCTGGCAAGAGCCTCTTCCACCTGAGTCTGAGAGTGAGGCCTaGGAACCCTTGAACTCTGGA +
Preference number: 4 (lower is better)
Translates to: VSRVGLVCCSWQEPLPPESESEA*EPLNSG
Trigger: TCCAGAGTTCAAGGGTTCCCAGGCCTCACTCTCAGA...CTCAGGTGGAAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGCTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp ACTTGTCCATGTGTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGGGGCTCCGTAGGTGGTaGTCAGATAGTAGGAACCCT +
Preference number: 4 (lower is better)
Translates to: TCPCVPGAGLVASSGAQEGLRRW*SDSRNP
Trigger: AGGGTTCCTACTATCTGACCACCACCTACGGAGCCC...CTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGACACATGGACAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CAA 72 bp CAGAACACAGAAGGCTGCAGAGCAGAGCAGAGGCTGTaGCTCACAAAGTCTGATGGCCCTCCCCTCCACTTC +
Preference number: 4 (lower is better)
Translates to: QNTEGCRAEQRL*LTKSDGPPLHF
Trigger: GAAGTGGAGGGGAGGGCCATCAGACTTTGTGAGCAACAGCCTCTGCTCTGCTCTGCAGCCTTCTGTGTTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR TCA 90 bp AACAATGGCAGGGTCGGGGTGGGGCTAGAAGCGGAGCCTGGTGGACTCAGACTCGCAGTAAGTCTCTACTaGCACAGTAGAACGCAATCA +
Preference number: 4 (lower is better)
Translates to: NNGRVGVGLEAEPGGLRLAVSLY*HSRTQS
Trigger: TGATTGCGTTCTACTGTGTCAGTAGAGACTTACTGC...GAGTCTGAGTCCACCAGGCTCCGCTTCTAGCCCCACCCCGACCCTGCCATTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR TCA 90 bp ACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGGGGGCAGCCGTAGAGTaGAGGGCAGTAAGTCTCTAC +
Preference number: 4 (lower is better)
Translates to: TLRSWVVVEHLSSIPEGQGAAVE*RAVSLY
Trigger: GTAGAGACTTACTGCCCTTCACTCTACGGCTGCCCC...CTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp AGTGGGTCATGGCAGGTGAGCCTGGAGTTTATAGCTTGGTCCTTTTCTTGCCCTTGGCCTAGACCTAGCTaGAGCCACACAGGGCAGGTC +
Preference number: 4 (lower is better)
Translates to: SGSWQVSLEFIAWSFSCPWPRPS*SHTGQV
Trigger: GACCTGCCCTGTGTGGCTGCAGCTAGGTCTAGGCCA...AGGGCAAGAAAAGGACCAAGCTATAAACTCCAGGCTCACCTGCCATGACCCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR GCA 90 bp GTGGAATCCAGGCATGGTGGTATATACCTGTCAGTGGCAGTGGAAAGGCTGAGGATCCCAGCCATCTCCTaGTGCAGGATCTTGGCAGCC +
Preference number: 4 (lower is better)
Translates to: VESRHGGIYLSVAVERLRIPAIS*CRILAA
Trigger: GGCTGCCAAGATCCTGCAGCAGGAGATGGCTGGGAT...CCTCAGCCTTTCCACTGCCACTGACAGGTATATACCACCATGCCTGGATTCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
CDS-3UTR GCA 90 bp ACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGGCACCTCAGCTGAGCTaGCCTTCAGGGAAGGGAAGT +
Preference number: 4 (lower is better)
Translates to: TLRSWVVVEHLSSIPEGQAPQLS*PSGKGS
Trigger: ACTTCCCTTCCCTGAAGGGCAGCTCAGCTGAGGTGC...CTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp TTAAAGATCCCCAAACAGGCTCCCCACAAGCCCAGGTCTGTTCTGGTAGCCCTAGCACCTCAGCTGAGCTaGCCTTCAGGGAAGGGAAGT +
Preference number: 4 (lower is better)
Translates to: LKIPKQAPHKPRSVLVALAPQLS*PSGKGS
Trigger: ACTTCCCTTCCCTGAAGGGCAGCTCAGCTGAGGTGC...TAGGGCTACCAGAACAGACCTGGGCTTGTGGGGAGCCTGTTTGGGGATCTTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
CDS-3UTR GCA 90 bp ATACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCGGGGGAGGGGCTTGGTaGAAGGGATTGGGAGTTGTC +
Preference number: 4 (lower is better)
Translates to: ILLDLGLWWNISAPSPRVGGGAW*KGLGVV
Trigger: GACAACTCCCAATCCCTTGCACCAAGCCCCTCCCCC...GACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp CTCTGGGTAAAAGTCAGTCTGTTGAGCCCAGCTCTGTGTCTTCAGCACCGGGGATCCTTTGCCAGCATCTaGAATAGGACCGGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: LWVKVSLLSPALCLQHRGSFASI*NRTGRV
Trigger: CACCCTGCCGGTCCTATTCCAGATGCTGGCAAAGGA...TCCCCGGTGCTGAAGACACAGAGCTGGGCTCAACAGACTGACTTTTACCCAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR CCA 90 bp GAACCTGGTGTGAGCAGGGTTGGGCTTGTTTGCTGCAGCTGGCAAGAGCCTCTTGGCCCAGGTTGGAGATaGTCTCAAGTTCAAGGAAGC +
Preference number: 4 (lower is better)
Translates to: EPGVSRVGLVCCSWQEPLGPGWR*SQVQGS
Trigger: GCTTCCTTGAACTTGAGACCATCTCCAACCTGGGCC...AAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGCTCACACCAGGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GCAGGGTTGGGCTTGTTTGCTGCAGCTGGCAAGAGCCTCTTCCACCTGAGCCTTCTTGGTGCAAGGGATTaGGAGTTGTCCCAGGTTTCA +
Preference number: 4 (lower is better)
Translates to: AGLGLFAAAGKSLFHLSLLGARD*ELSQVS
Trigger: TGAAACCTGGGACAACTCCCAATCCCTTGCACCAAG...AAGGCTCAGGTGGAAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp ATACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCGGAGGGGGAGGGGCTTaGTGCAAGGGATTGGGAGTT +
Preference number: 4 (lower is better)
Translates to: ILLDLGLWWNISAPSPRVGGGGA*CKGLGV
Trigger: AACTCCCAATCCCTTGCACCAAGCCCCTCCCCCTCC...GACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp ATACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCTTGCTCCGTGGTCCTTaGAGGCCTGTCCCCAAGGCT +
Preference number: 4 (lower is better)
Translates to: ILLDLGLWWNISAPSPRVLLRGP*RPVPKA
Trigger: AGCCTTGGGGACAGGCCTCCAAGGACCACGGAGCAA...GACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp CTAGATGGCAGGGATGTGTGGTTAAGGAGAGCGGCCAATGAGAGCCCAGTCCCAGGAACCCTTGAACTCTaGAGAGCTTTGGGGACAGCT +
Preference number: 4 (lower is better)
Translates to: LDGRDVWLRRAANESPVPGTLEL*RALGTA
Trigger: AGCTGTCCCCAAAGCTCTCCAGAGTTCAAGGGTTCC...TGGGACTGGGCTCTCATTGGCCGCTCTCCTTAACCACACATCCCTGCCATCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGTCCCTGCACCCAGGTCGGTGGTaGTGGTGGCCAGGACCACTA +
Preference number: 4 (lower is better)
Translates to: DPPTPNFMALVELVHVSLHPGRW*WWPGPL
Trigger: TAGTGGTCCTGGCCACCACCACCACCGACCTGGGTG...CAGGGACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CAA 72 bp GTTGAACTTGTCCATGTGTCCCTGGAGCTGGCTTGGTaGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTA +
Preference number: 4 (lower is better)
Translates to: VELVHVSLELAW*LPVELRSPVVL
Trigger: TAGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGACACATGGACAAGTTCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp TCCTTGACTCCCATGGCTTCATTTATCAAATGGGTTTCTCCTCCTCTTCCTCCTGCTTCTCCAGGACACTaGTGCCCCGGCGTGGGATGC +
Preference number: 4 (lower is better)
Translates to: SLTPMASFIKWVSPPLPPASPGH*CPGVGC
Trigger: GCATCCCACGCCGGGGCATCAGTGTCCTGGAGAAGC...AGGAGGAAGAGGAGGAGAAACCCATTTGATAAATGAAGCCATGGGAGTCAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR TCA 90 bp GAGACAGGACCAGGAGAATTGCCTGAGGAACCTGGTGTGAGCAGGGTTGGGCTTGTTCCACCAAGGCTTTaGGTTCAGTGCTCTGTAGCA +
Preference number: 4 (lower is better)
Translates to: ETGPGELPEEPGVSRVGLVPPRL*VQCSVA
Trigger: TGCTACAGAGCACTGAACTCAAAGCCTTGGTGGAAC...AAGCCCAACCCTGCTCACACCAGGTTCCTCAGGCAATTCTCCTGGTCCTGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp AGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGGGAGCAGTTCCACCAAGGCTTTaGGTTCAGTGCTCTGTAGCA +
Preference number: 4 (lower is better)
Translates to: RSWVVVEHLSSIPEGQGAVPPRL*VQCSVA
Trigger: TGCTACAGAGCACTGAACTCAAAGCCTTGGTGGAAC...TGCTCCCTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp GGAACCCCTTCATTAGCCAGTCCTGGGGAAAGTGAGCTCTTCTCAGGAAAGACTATCCCAGCCATCTCCTaGTGCAGGATCTTGGCAGCC +
Preference number: 4 (lower is better)
Translates to: GTPSLASPGESELFSGKTIPAIS*CRILAA
Trigger: GGCTGCCAAGATCCTGCAGCAGGAGATGGCTGGGAT...AGTCTTTCCTGAGAAGAGCTCACTTTCCCCAGGACTGGCTAATGAAGGGGTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056950.14
CDS-3UTR GCA 90 bp AGTGGGTCATGGCAGGTGAGCCTGGAGTTTATAGCTTGGTCCTTTTCTTGCCCTATCCCAGCCATCTCCTaGTGCAGGATCTTGGCAGCC +
Preference number: 4 (lower is better)
Translates to: SGSWQVSLEFIAWSFSCPIPAIS*CRILAA
Trigger: GGCTGCCAAGATCCTGCAGCAGGAGATGGCTGGGAT...AGGGCAAGAAAAGGACCAAGCTATAAACTCCAGGCTCACCTGCCATGACCCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR GCA 90 bp TTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGCCGGAGGCTGGAGGATaGAGGGGTCCCAGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: FNDPPTPNFMALVELVHVPEAGG*RGPRGW
Trigger: CCAGCCCCTGGGACCCCTGCATCCTCCAGCCTCCGG...CACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp ACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGGCTCCTCCTCTGCACTaGTGGTTGAGTAGGAGTCCT +
Preference number: 4 (lower is better)
Translates to: TLRSWVVVEHLSSIPEGQAPPLH*WLSRSP
Trigger: AGGACTCCTACTCAACCAGCAGTGCAGAGGAGGAGC...CTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp GAGACAGGACCAGGAGAATTGCCTGAGGAACCTGGTGTGAGCAGGGTTGGGCTTATGGTACGGATCTCCTaGAGCATCTCAGTGCTGGAT +
Preference number: 4 (lower is better)
Translates to: ETGPGELPEEPGVSRVGLMVRIS*SISVLD
Trigger: ATCCAGCACTGAGATGCTGCAGGAGATCCGTACCAT...AAGCCCAACCCTGCTCACACCAGGTTCCTCAGGCAATTCTCCTGGTCCTGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp ACACTGATGACCTGTGGTGTTTCCATCACAGAACAGGCCTTTAATGACCCTCCCCTTCTCAGCGCACTGTaGACACAGTGCCTGGGCTGC +
Preference number: 4 (lower is better)
Translates to: TLMTCGVSITEQAFNDPPLLSAL*TQCLGC
Trigger: GCAGCCCAGGCACTGTGTGCACAGTGCGCTGAGAAG...GGGAGGGTCATTAAAGGCCTGTTCTGTGATGGAAACACCACAGGTCATCAGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GTGGAATCCAGGCATGGTGGTATATACCTGTCAGTGGCAGTGGAAAGGCTGAGGTCCTTTGCCAGCATCTaGAATAGGACCGGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: VESRHGGIYLSVAVERLRSFASI*NRTGRV
Trigger: CACCCTGCCGGTCCTATTCCAGATGCTGGCAAAGGA...CCTCAGCCTTTCCACTGCCACTGACAGGTATATACCACCATGCCTGGATTCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
CDS-3UTR CCA 90 bp GAACCTGGTGTGAGCAGGGTTGGGCTTGTTTGCTGCAGCTGGCAAGAGCCTCTTCTTGGTGCAAGGGATTaGGAGTTGTCCCAGGTTTCA +
Preference number: 4 (lower is better)
Translates to: EPGVSRVGLVCCSWQEPLLGARD*ELSQVS
Trigger: TGAAACCTGGGACAACTCCCAATCCCTTGCACCAAG...AAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGCTCACACCAGGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp CTGAGGCAGGGATGCGGTGCAGGGCTGTCTCTTCAAAACAATACTCTTAGATCTCCTTGGGGGTGGTACTaGGGGTTGTTTGGCCTTCCC +
Preference number: 4 (lower is better)
Translates to: LRQGCGAGLSLQNNTLRSPWGWY*GLFGLP
Trigger: GGGAAGGCCAAACAACCCCCAGTACCACCCCCAAGG...AGATCTAAGAGTATTGTTTTGAAGAGACAGCCCTGCACCGCATCCCTGCCTCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp ACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGCTTCTTCCTTGGGGGTaGTACTGGGGGTTGTTTGGC +
Preference number: 4 (lower is better)
Translates to: TLRSWVVVEHLSSIPEGQLLPWG*YWGLFG
Trigger: GCCAAACAACCCCCAGTACCACCCCCAAGGAAGAAG...CTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp ATACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCCTGGAGAGGAAGGCATaGAAGACGCTGGCGAAGCTG +
Preference number: 4 (lower is better)
Translates to: ILLDLGLWWNISAPSPRVLERKA*KTLAKL
Trigger: CAGCTTCGCCAGCGTCTTCCATGCCTTCCTCTCCAG...GACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GGAACCCCTTCATTAGCCAGTCCTGGGGAAAGTGAGCTCTTCTCAGGAAAGACTCTGGAGAGGAAGGCATaGAAGACGCTGGCGAAGCTG +
Preference number: 4 (lower is better)
Translates to: GTPSLASPGESELFSGKTLERKA*KTLAKL
Trigger: CAGCTTCGCCAGCGTCTTCCATGCCTTCCTCTCCAG...AGTCTTTCCTGAGAAGAGCTCACTTTCCCCAGGACTGGCTAATGAAGGGGTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GGAACCCCTTCATTAGCCAGTCCTGGGGAAAGTGAGCTCTTCTCAGGAAAGACTTCAGTGCTGGATGTCTaGCGGGCCATCATCTCCAGG +
Preference number: 4 (lower is better)
Translates to: GTPSLASPGESELFSGKTSVLDV*RAIISR
Trigger: CCTGGAGATGATGGCCCGCCAGACATCCAGCACTGA...AGTCTTTCCTGAGAAGAGCTCACTTTCCCCAGGACTGGCTAATGAAGGGGTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GGAACCCCTTCATTAGCCAGTCCTGGGGAAAGTGAGCTCTTCTCAGGAAAGACTGCCAGGACCACTAGCTaGTTCTCCTTGAGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: GTPSLASPGESELFSGKTARTTS*FSLSCC
Trigger: GCAGCAGCTCAAGGAGAACCAGCTAGTGGTCCTGGC...AGTCTTTCCTGAGAAGAGCTCACTTTCCCCAGGACTGGCTAATGAAGGGGTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTAGGTCTTCAGCAAGATaGAGATTTTCTTCCCTGGTG +
Preference number: 4 (lower is better)
Translates to: VPGAGLVASSGAQEPRCTRSSAR*RFSSLV
Trigger: CACCAGGGAAGAAAATCTCCATCTTGCTGAAGACCT...AGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp ACACTGATGACCTGTGGTGTTTCCATCACAGAACAGGCCTTTAATGACCCTCCCGTTCCCAGCGATGGATaGAGTCCTGCACCTCCACGC +
Preference number: 4 (lower is better)
Translates to: TLMTCGVSITEQAFNDPPVPSDG*SPAPPR
Trigger: GCGTGGAGGTGCAGGACTCCATCCATCGCTGGGAAC...GGGAGGGTCATTAAAGGCCTGTTCTGTGATGGAAACACCACAGGTCATCAGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp AGGCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCCTCCAGCACCTCAGCTaGGCTGCCCTTCAGGGAAGG +
Preference number: 4 (lower is better)
Translates to: RPLMTLPLPILWHWLNLSLQHLS*AALQGR
Trigger: CCTTCCCTGAAGGGCAGCTCAGCTGAGGTGCTGGAG...GGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp TCTGTGTTTGGATTTGCCTCCCCTGAGCATATCTACTTTGGAGTCTCACATGTGCTCCAGCACCTCAGCTaGGCTGCCCTTCAGGGAAGG +
Preference number: 4 (lower is better)
Translates to: SVFGFASPEHIYFGVSHVLQHLS*AALQGR
Trigger: CCTTCCCTGAAGGGCAGCTCAGCTGAGGTGCTGGAG...CACATGTGAGACTCCAAAGTAGATATGCTCAGGGGAGGCAAATCCAAACACAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR TCA 90 bp GGGCTCAGAGCGGCTTGCAGAACACAGAAGGCTGCAGAGCAGAGCAGAGGCTGTAGAACGCAATCAGTCTaGAGATGTCCTCAAACACAA +
Preference number: 4 (lower is better)
Translates to: GLRAACRTQKAAEQSRGCRTQSV*RCPQTQ
Trigger: TTGTGTTTGAGGACATCTTCAGACTGATTGCGTTCT...ACAGCCTCTGCTCTGCTCTGCAGCCTTCTGTGTTCTGCAAGCCGCTCTGAGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR TCA 90 bp GCAGGGTTGGGCTTGTTTGCTGCAGCTGGCAAGAGCCTCTTCCACCTGAGCCTTGCAGTAAGTCTCTACTaGCACAGTAGAACGCAATCA +
Preference number: 4 (lower is better)
Translates to: AGLGLFAAAGKSLFHLSLAVSLY*HSRTQS
Trigger: TGATTGCGTTCTACTGTGTCAGTAGAGACTTACTGC...AAGGCTCAGGTGGAAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp GCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGCATGGGGTGCAAGGTaGGAGGTGGGCGTTAGGGGG +
Preference number: 4 (lower is better)
Translates to: AFNDPPTPNFMALVELVHAWGAR*EVGVRG
Trigger: CCCCCTAACGCCCACCTCTCACCTTGCACCCCATGC...ATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp ACTAAGAACTTGGTGCCTCAGGCAATGACTCTACCTGATTGGCTTAGGCATGCTCTTGAGCTGCTGCAGTaGGCCATCCCGGCTGTGGAT +
Preference number: 4 (lower is better)
Translates to: TKNLVPQAMTLPDWLRHALELLQ*AIPAVD
Trigger: ATCCACAGCCGGGATGGCTCACTGCAGCAGCTCAAG...AGCATGCCTAAGCCAATCAGGTAGAGTCATTGCCTGAGGCACCAAGTTCTTAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp TGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTAGGCACTCTGGTAGCTGATTTTCTTCCCTGGTaGGTAGGCTTTGTGCATGCT +
Preference number: 4 (lower is better)
Translates to: WLLPVELRSPVVLGTLVADFLPW*VGFVHA
Trigger: AGCATGCACAAAGCCTACTCACCAGGGAAGAAAATC...AGCTACCAGAGTGCCTAGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp ACACTGATGACCTGTGGTGTTTCCATCACAGAACAGGCCTTTAATGACCCTCCCCCAGCCATCTCCTGCTaGAGGATCTTGGCAGCCTCT +
Preference number: 4 (lower is better)
Translates to: TLMTCGVSITEQAFNDPPPAISC*RILAAS
Trigger: AGAGGCTGCCAAGATCCTGCAGCAGGAGATGGCTGG...GGGAGGGTCATTAAAGGCCTGTTCTGTGATGGAAACACCACAGGTCATCAGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056950.14
CDS-3UTR GCA 90 bp CTGAGGCAGGGATGCGGTGCAGGGCTGTCTCTTCAAAACAATACTCTTAGATCTGCACCTCAGCTGAGCTaGCCTTCAGGGAAGGGAAGT +
Preference number: 4 (lower is better)
Translates to: LRQGCGAGLSLQNNTLRSAPQLS*PSGKGS
Trigger: ACTTCCCTTCCCTGAAGGGCAGCTCAGCTGAGGTGC...AGATCTAAGAGTATTGTTTTGAAGAGACAGCCCTGCACCGCATCCCTGCCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp GGCAGGGATGTGTGGTTAAGGAGAGCGGCCAATGAGAGCCCAGTCCCAATCCCTTTCACAGGAACAATTTaGGTAATGGGTTGTAGGCCG +
Preference number: 4 (lower is better)
Translates to: GRDVWLRRAANESPVPIPFTGTI*VMGCRP
Trigger: CGGCCTACAACCCATTACGCAAATTGTTCCTGTGAA...AGGGATTGGGACTGGGCTCTCATTGGCCGCTCTCCTTAACCACACATCCCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp AGAGCGGCCAATGAGAGCCCAGTCCCAATCCCTCTAGCCTCCTCTCAGGAGATCTTCACAGGAACAATTTaGGTAATGGGTTGTAGGCCG +
Preference number: 4 (lower is better)
Translates to: RAANESPVPIPLASSQEIFTGTI*VMGCRP
Trigger: CGGCCTACAACCCATTACGCAAATTGTTCCTGTGAA...GATCTCCTGAGAGGAGGCTAGAGGGATTGGGACTGGGCTCTCATTGGCCGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp ACACTGATGACCTGTGGTGTTTCCATCACAGAACAGGCCTTTAATGACCCTCCCAGTTCCTCCTCCGAGTaGAGGGTGGGTTCCACCAAG +
Preference number: 4 (lower is better)
Translates to: TLMTCGVSITEQAFNDPPSSSSE*RVGSTK
Trigger: CTTGGTGGAACCCACCCTGCACTCGGAGGAGGAACT...GGGAGGGTCATTAAAGGCCTGTTCTGTGATGGAAACACCACAGGTCATCAGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp CCTCTTCCACCTGAGCCTTGGTTTCCCTTACATCCAACTAAGAACTTGGTGCCTAGTTCCTCCTCCGAGTaGAGGGTGGGTTCCACCAAG +
Preference number: 4 (lower is better)
Translates to: PLPPEPWFPLHPTKNLVPSSSSE*RVGSTK
Trigger: CTTGGTGGAACCCACCCTGCACTCGGAGGAGGAACT...AGGCACCAAGTTCTTAGTTGGATGTAAGGGAAACCAAGGCTCAGGTGGAAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp GACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGTCCCTGCGATGGATGGAGTCCTaGACCTCCACGCTCAGCTGT +
Preference number: 4 (lower is better)
Translates to: DPPTPNFMALVELVHVSLRWMES*TSTLSC
Trigger: ACAGCTGAGCGTGGAGGTGCAGGACTCCATCCATCG...CAGGGACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp AGGCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCCCTGGCTTTGCTCCGTaGTCCTTGGAGGCCTGTCCC +
Preference number: 4 (lower is better)
Translates to: RPLMTLPLPILWHWLNLSPGFAP*SLEACP
Trigger: GGGACAGGCCTCCAAGGACCACGGAGCAAAGCCAGG...GGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GGAACCCCTTCATTAGCCAGTCCTGGGGAAAGTGAGCTCTTCTCAGGAAAGACTGGTATGCTGTCAGCATaGCTGGCTTTGGCCTCTGTG +
Preference number: 4 (lower is better)
Translates to: GTPSLASPGESELFSGKTGMLSA*LALASV
Trigger: CACAGAGGCCAAAGCCAGCCATGCTGACAGCATACC...AGTCTTTCCTGAGAAGAGCTCACTTTCCCCAGGACTGGCTAATGAAGGGGTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp CTGAGGCAGGGATGCGGTGCAGGGCTGTCTCTTCAAAACAATACTCTTAGATCTGCCAGGACCACTAGCTaGTTCTCCTTGAGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: LRQGCGAGLSLQNNTLRSARTTS*FSLSCC
Trigger: GCAGCAGCTCAAGGAGAACCAGCTAGTGGTCCTGGC...AGATCTAAGAGTATTGTTTTGAAGAGACAGCCCTGCACCGCATCCCTGCCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp CCTCTTCCACCTGAGCCTTGGTTTCCCTTACATCCAACTAAGAACTTGGTGCCTGTGGTCCCTGTCTGTTaGAGTCCCCACATTCTGGCT +
Preference number: 4 (lower is better)
Translates to: PLPPEPWFPLHPTKNLVPVVPVC*SPHILA
Trigger: AGCCAGAATGTGGGGACTTCAACAGACAGGGACCAC...AGGCACCAAGTTCTTAGTTGGATGTAAGGGAAACCAAGGCTCAGGTGGAAGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp CCACAAGCCCAGGTCTGTTCTGGTAGCCCTATGAACACCCAGGAGTTTTGCCTTACAGACCAAGCCTCGTaGCGTCTTTCTCCTCATCTT +
Preference number: 4 (lower is better)
Translates to: PQAQVCSGSPMNTQEFCLTDQAS*RLSPHL
Trigger: AAGATGAGGAGAAAGACGGCACGAGGCTTGGTCTGT...AAGGCAAAACTCCTGGGTGTTCATAGGGCTACCAGAACAGACCTGGGCTTGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
CDS-3UTR GCA 90 bp ACTAAGAACTTGGTGCCTCAGGCAATGACTCTACCTGATTGGCTTAGGCATGCTTCTGTGTCCTGGCTTTaGTCCGTGGTCCTTGGAGGC +
Preference number: 4 (lower is better)
Translates to: TKNLVPQAMTLPDWLRHASVSWL*SVVLGG
Trigger: GCCTCCAAGGACCACGGAGCAAAGCCAGGACACAGA...AGCATGCCTAAGCCAATCAGGTAGAGTCATTGCCTGAGGCACCAAGTTCTTAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp ACACTGATGACCTGTGGTGTTTCCATCACAGAACAGGCCTTTAATGACCCTCCCCAGGAGGCACTGGTATaGTGTCAGCATGGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: TLMTCGVSITEQAFNDPPQEALV*CQHGWL
Trigger: AAGCCAGCCATGCTGACAGCATACCAGTGCCTCCTG...GGGAGGGTCATTAAAGGCCTGTTCTGTGATGGAAACACCACAGGTCATCAGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp CTGAGGCAGGGATGCGGTGCAGGGCTGTCTCTTCAAAACAATACTCTTAGATCTGCTCCTCCTCTGCACTaGTGGTTGAGTAGGAGTCCT +
Preference number: 4 (lower is better)
Translates to: LRQGCGAGLSLQNNTLRSAPPLH*WLSRSP
Trigger: AGGACTCCTACTCAACCAGCAGTGCAGAGGAGGAGC...AGATCTAAGAGTATTGTTTTGAAGAGACAGCCCTGCACCGCATCCCTGCCTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp CTGAGGCAGGGATGCGGTGCAGGGCTGTCTCTTCAAAACAATACTCTTAGATCTAGTCCTGCACCAGGCTaGCGAAGTAGGAGCTCTTGT +
Preference number: 4 (lower is better)
Translates to: LRQGCGAGLSLQNNTLRSSPAPG*RSRSSC
Trigger: ACAAGAGCTCCTACTTCGGCAGCCTGGTGCAGGACT...AGATCTAAGAGTATTGTTTTGAAGAGACAGCCCTGCACCGCATCCCTGCCTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp ACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGATGGTACGGATCTCCTaGAGCATCTCAGTGCTGGAT +
Preference number: 4 (lower is better)
Translates to: TLRSWVVVEHLSSIPEGQMVRIS*SISVLD
Trigger: ATCCAGCACTGAGATGCTGCAGGAGATCCGTACCAT...CTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp ACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGAGTAGGCTTTGTGCATaGTGGTCAGCTTCTGCAGGA +
Preference number: 4 (lower is better)
Translates to: TLRSWVVVEHLSSIPEGQSRLCA*WSASAG
Trigger: TCCTGCAGAAGCTGACCAGCATGCACAAAGCCTACT...CTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp ACTAAGAACTTGGTGCCTCAGGCAATGACTCTACCTGATTGGCTTAGGCATGCTCGATGGATGGAGTCCTaGACCTCCACGCTCAGCTGT +
Preference number: 4 (lower is better)
Translates to: TKNLVPQAMTLPDWLRHARWMES*TSTLSC
Trigger: ACAGCTGAGCGTGGAGGTGCAGGACTCCATCCATCG...AGCATGCCTAAGCCAATCAGGTAGAGTCATTGCCTGAGGCACCAAGTTCTTAGT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp CTGAGGCAGGGATGCGGTGCAGGGCTGTCTCTTCAAAACAATACTCTTAGATCTTCCTTTGCCAGCATCTaGAATAGGACCGGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: LRQGCGAGLSLQNNTLRSSFASI*NRTGRV
Trigger: CACCCTGCCGGTCCTATTCCAGATGCTGGCAAAGGA...AGATCTAAGAGTATTGTTTTGAAGAGACAGCCCTGCACCGCATCCCTGCCTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056950.14
CDS-3UTR CCA 90 bp AGTGGGTCATGGCAGGTGAGCCTGGAGTTTATAGCTTGGTCCTTTTCTTGCCCTGGCCCAGGTTGGAGATaGTCTCAAGTTCAAGGAAGC +
Preference number: 4 (lower is better)
Translates to: SGSWQVSLEFIAWSFSCPGPGWR*SQVQGS
Trigger: GCTTCCTTGAACTTGAGACCATCTCCAACCTGGGCC...AGGGCAAGAAAAGGACCAAGCTATAAACTCCAGGCTCACCTGCCATGACCCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR CCA 90 bp CCTCTTCCACCTGAGCCTTGGTTTCCCTTACATCCAACTAAGAACTTGGTGCCTCAGCATGGCTGGCTTTaGCCTCTGTGTCCTGGCTTT +
Preference number: 4 (lower is better)
Translates to: PLPPEPWFPLHPTKNLVPQHGWL*PLCPGF
Trigger: AAAGCCAGGACACAGAGGCCAAAGCCAGCCATGCTG...AGGCACCAAGTTCTTAGTTGGATGTAAGGGAAACCAAGGCTCAGGTGGAAGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp CCTCTTCCACCTGAGCCTTGGTTTCCCTTACATCCAACTAAGAACTTGGTGCCTTGCTGTCAGCATGGCTaGCTTTGGCCTCTGTGTCCT +
Preference number: 4 (lower is better)
Translates to: PLPPEPWFPLHPTKNLVPCCQHG*LWPLCP
Trigger: AGGACACAGAGGCCAAAGCCAGCCATGCTGACAGCA...AGGCACCAAGTTCTTAGTTGGATGTAAGGGAAACCAAGGCTCAGGTGGAAGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GGAACCCCTTCATTAGCCAGTCCTGGGGAAAGTGAGCTCTTCTCAGGAAAGACTTCTGAGAGTGAGGCCTaGGAACCCTTGAACTCTGGA +
Preference number: 4 (lower is better)
Translates to: GTPSLASPGESELFSGKTSESEA*EPLNSG
Trigger: TCCAGAGTTCAAGGGTTCCCAGGCCTCACTCTCAGA...AGTCTTTCCTGAGAAGAGCTCACTTTCCCCAGGACTGGCTAATGAAGGGGTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp CTCTGGGTAAAAGTCAGTCTGTTGAGCCCAGCTCTGTGTCTTCAGCACCGGGGACTCAAACACAAGAACTaGGCCTTCCAGGTACAGTAT +
Preference number: 4 (lower is better)
Translates to: LWVKVSLLSPALCLQHRGLKHKN*AFQVQY
Trigger: ATACTGTACCTGGAAGGCTCAGTTCTTGTGTTTGAG...TCCCCGGTGCTGAAGACACAGAGCTGGGCTCAACAGACTGACTTTTACCCAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR TCA 90 bp CCTCTTCCACCTGAGCCTTGGTTTCCCTTACATCCAACTAAGAACTTGGTGCCTGGGAGGAAGGTTGAGTaGTGCTGTCCTAGAAATGCC +
Preference number: 4 (lower is better)
Translates to: PLPPEPWFPLHPTKNLVPGRKVE*CCPRNA
Trigger: GGCATTTCTAGGACAGCATCACTCAACCTTCCTCCC...AGGCACCAAGTTCTTAGTTGGATGTAAGGGAAACCAAGGCTCAGGTGGAAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp ATACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCCCATGGAGTCATAGATaGGCTTGCAGGTCTTCAGCA +
Preference number: 4 (lower is better)
Translates to: ILLDLGLWWNISAPSPRVPWSHR*ACRSSA
Trigger: TGCTGAAGACCTGCAAGCTCATCTATGACTCCATGG...GACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp GGAACCCCTTCATTAGCCAGTCCTGGGGAAAGTGAGCTCTTCTCAGGAAAGACTACAGACCAAGCCTCGTaGCGTCTTTCTCCTCATCTT +
Preference number: 4 (lower is better)
Translates to: GTPSLASPGESELFSGKTTDQAS*RLSPHL
Trigger: AAGATGAGGAGAAAGACGGCACGAGGCTTGGTCTGT...AGTCTTTCCTGAGAAGAGCTCACTTTCCCCAGGACTGGCTAATGAAGGGGTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056950.14
CDS-3UTR GCA 90 bp TCTGTGTTTGGATTTGCCTCCCCTGAGCATATCTACTTTGGAGTCTCACATGTGCCAGCCATCTCCTGCTaGAGGATCTTGGCAGCCTCT +
Preference number: 4 (lower is better)
Translates to: SVFGFASPEHIYFGVSHVPAISC*RILAAS
Trigger: AGAGGCTGCCAAGATCCTGCAGCAGGAGATGGCTGG...CACATGTGAGACTCCAAAGTAGATATGCTCAGGGGAGGCAAATCCAAACACAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR GCA 90 bp AGTGGGTCATGGCAGGTGAGCCTGGAGTTTATAGCTTGGTCCTTTTCTTGCCCTACACACAGCACCAATTaGTTCAGGTTGTTGTCCCGG +
Preference number: 4 (lower is better)
Translates to: SGSWQVSLEFIAWSFSCPTHSTN*FRLLSR
Trigger: CCGGGACAACAACCTGAAGCAATTGGTGCTGTGTGT...AGGGCAAGAAAAGGACCAAGCTATAAACTCCAGGCTCACCTGCCATGACCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR GCA 90 bp GTGTTTGGATTTGCCTCCCCTGAGCATATCTACTTTGGAGTCTCACATGTGCTTGCACCTCAGCTGAGCTaGCCTTCAGGGAAGGGAAGT +
Preference number: 4 (lower is better)
Translates to: VFGFASPEHIYFGVSHVLAPQLS*PSGKGS
Trigger: ACTTCCCTTCCCTGAAGGGCAGCTCAGCTGAGGTGC...AAGCACATGTGAGACTCCAAAGTAGATATGCTCAGGGGAGGCAAATCCAAACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR GCA 90 bp CCTCTTCCACCTGAGCCTTGGTTTCCCTTACATCCAACTAAGAACTTGGTGCCTCTGTTTCTCAGAGGATaGCTCCTGTATGGGGCTCTC +
Preference number: 4 (lower is better)
Translates to: PLPPEPWFPLHPTKNLVPLFLRG*LLYGAL
Trigger: GAGAGCCCCATACAGGAGGCATCCTCTGAGAAACAG...AGGCACCAAGTTCTTAGTTGGATGTAAGGGAAACCAAGGCTCAGGTGGAAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp CTGAGGCAGGGATGCGGTGCAGGGCTGTCTCTTCAAAACAATACTCTTAGATCTAGCTTTGGGGACAGCTaGTGGACTGAACTTGGAGGT +
Preference number: 4 (lower is better)
Translates to: LRQGCGAGLSLQNNTLRSSFGDS*WTELGG
Trigger: ACCTCCAAGTTCAGTCCAGCAGCTGTCCCCAAAGCT...AGATCTAAGAGTATTGTTTTGAAGAGACAGCCCTGCACCGCATCCCTGCCTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp ACACTGATGACCTGTGGTGTTTCCATCACAGAACAGGCCTTTAATGACCCTCCCGGAACCCTTGAACTCTaGAGAGCTTTGGGGACAGCT +
Preference number: 4 (lower is better)
Translates to: TLMTCGVSITEQAFNDPPGTLEL*RALGTA
Trigger: AGCTGTCCCCAAAGCTCTCCAGAGTTCAAGGGTTCC...GGGAGGGTCATTAAAGGCCTGTTCTGTGATGGAAACACCACAGGTCATCAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp CCTCTTCCACCTGAGCCTTGGTTTCCCTTACATCCAACTAAGAACTTGGTGCCTACAGTTTGCGGTCGCTaGAGAGGAAGGCATGGAAGA +
Preference number: 4 (lower is better)
Translates to: PLPPEPWFPLHPTKNLVPTVCGR*RGRHGR
Trigger: TCTTCCATGCCTTCCTCTCCAGCGACCGCAAACTGT...AGGCACCAAGTTCTTAGTTGGATGTAAGGGAAACCAAGGCTCAGGTGGAAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CAA 72 bp ACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTaGTCCATGTGTCCCTGGAGCTGGCTTGGTTGCTTC +
Preference number: 4 (lower is better)
Translates to: TLPLPILWHWLN*SMCPWSWLGCF
Trigger: GAAGCAACCAAGCCAGCTCCAGGGACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CAA 72 bp CTGTGTGGTGACTTTCATCTCCAGCTCACTCCATGCTaGAGGTCACATTCTCTTGAGAGCAGGGCCATTCTG +
Preference number: 4 (lower is better)
Translates to: LCGDFHLQLTPC*RSHSLESRAIL
Trigger: CAGAATGGCCCTGCTCTCAAGAGAATGTGACCTCAAGCATGGAGTGAGCTGGAGATGAAAGTCACCACACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR TCA 90 bp CTGAGGCAGGGATGCGGTGCAGGGCTGTCTCTTCAAAACAATACTCTTAGATCTCCATGGAGTCATAGATaGGCTTGCAGGTCTTCAGCA +
Preference number: 4 (lower is better)
Translates to: LRQGCGAGLSLQNNTLRSPWSHR*ACRSSA
Trigger: TGCTGAAGACCTGCAAGCTCATCTATGACTCCATGG...AGATCTAAGAGTATTGTTTTGAAGAGACAGCCCTGCACCGCATCCCTGCCTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp AGTAATGAGTCACTGGAACCCAGGACCGGACATCTCATTTCCTCCCCTTTCTCTACACACAGCACCAATTaGTTCAGGTTGTTGTCCCGG +
Preference number: 4 (lower is better)
Translates to: SNESLEPRTGHLISSPFSTHSTN*FRLLSR
Trigger: CCGGGACAACAACCTGAAGCAATTGGTGCTGTGTGT...AGAGAAAGGGGAGGAAATGAGATGTCCGGTCCTGGGTTCCAGTGACTCATTACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
CDS-3UTR GCA 90 bp TTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGTGGGGGAGGGGCTTGGTaGAAGGGATTGGGAGTTGTC +
Preference number: 4 (lower is better)
Translates to: LMTLPLPILWHWLNLSMCGGGAW*KGLGVV
Trigger: GACAACTCCCAATCCCTTGCACCAAGCCCCTCCCCC...ACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp GCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATTCTGTGTCCTGGCTTTaGTCCGTGGTCCTTGGAGGC +
Preference number: 4 (lower is better)
Translates to: AFNDPPTPNFMALVELVHSVSWL*SVVLGG
Trigger: GCCTCCAAGGACCACGGAGCAAAGCCAGGACACAGA...ATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp TTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGCCTTGGGGGTGGTACTaGGGGTTGTTTGGCCTTCCC +
Preference number: 4 (lower is better)
Translates to: FNDPPTPNFMALVELVHVPWGWY*GLFGLP
Trigger: GGGAAGGCCAAACAACCCCCAGTACCACCCCCAAGG...CACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp TTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGTGACCCGCTTCTTCCTTaGGGGTGGTACTGGGGGTTG +
Preference number: 4 (lower is better)
Translates to: LMTLPLPILWHWLNLSMCDPLLP*GWYWGL
Trigger: CAACCCCCAGTACCACCCCCAAGGAAGAAGCGGGTC...ACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp ACTAAGAACTTGGTGCCTCAGGCAATGACTCTACCTGATTGGCTTAGGCATGCTACAGTTTGCGGTCGCTaGAGAGGAAGGCATGGAAGA +
Preference number: 4 (lower is better)
Translates to: TKNLVPQAMTLPDWLRHATVCGR*RGRHGR
Trigger: TCTTCCATGCCTTCCTCTCCAGCGACCGCAAACTGT...AGCATGCCTAAGCCAATCAGGTAGAGTCATTGCCTGAGGCACCAAGTTCTTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATTCAGTGCTGGATGTCTaGCGGGCCATCATCTCCAGG +
Preference number: 4 (lower is better)
Translates to: AFNDPPTPNFMALVELVHSVLDV*RAIISR
Trigger: CCTGGAGATGATGGCCCGCCAGACATCCAGCACTGA...ATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CAA 72 bp GGCTGTCTCTTCAAAACAATACTCTTAGATCTTGGGTaGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTC +
Preference number: 4 (lower is better)
Translates to: GCLFKTILLDLG*WWNISAPSPRV
Trigger: GACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGTATTGTTTTGAAGAGACAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CAA 72 bp GCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATaGGTTGAACTTGTCCATGTGTCCCTGGAGCTGGCT +
Preference number: 4 (lower is better)
Translates to: AFNDPPTPNFMA*VELVHVSLELA
Trigger: AGCCAGCTCCAGGGACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CAA 72 bp CCCTCCCCTCCACTTCTCAGAATTCTCCATGCAGGTTaGAGTAGGTTTCAACACTCTGCTGTAACAGGTGTG +
Preference number: 4 (lower is better)
Translates to: PSPPLLRILHAG*SRFQHSAVTGV
Trigger: CACACCTGTTACAGCAGAGTGTTGAAACCTACTCAAACCTGCATGGAGAATTCTGAGAAGTGGAGGGGAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR TCA 90 bp GCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGGTCCCTGTCTGTTaGAGTCCCCACATTCTGGCT +
Preference number: 4 (lower is better)
Translates to: AFNDPPTPNFMALVELVHVVPVC*SPHILA
Trigger: AGCCAGAATGTGGGGACTTCAACAGACAGGGACCAC...ATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp GCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATAGTCCTGCACCAGGCTaGCGAAGTAGGAGCTCTTGT +
Preference number: 4 (lower is better)
Translates to: AFNDPPTPNFMALVELVHSPAPG*RSRSSC
Trigger: ACAAGAGCTCCTACTTCGGCAGCCTGGTGCAGGACT...ATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGGTATGCTGTCAGCATaGCTGGCTTTGGCCTCTGTG +
Preference number: 4 (lower is better)
Translates to: AFNDPPTPNFMALVELVHGMLSA*LALASV
Trigger: CACAGAGGCCAAAGCCAGCCATGCTGACAGCATACC...ATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATCCAGGGCTCCGTAGGTaGTGGTCAGATAGTAGGAAC +
Preference number: 4 (lower is better)
Translates to: AFNDPPTPNFMALVELVHPGLRR*WSDSRN
Trigger: GTTCCTACTATCTGACCACCACCTACGGAGCCCTGG...ATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CAA 72 bp TTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTaGAACTTGTCCATGTGTCCCTGGAGCTGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: LMTLPLPILWHW*NLSMCPWSWLG
Trigger: ACCAAGCCAGCTCCAGGGACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp GACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGTCCCTGCTCAAACACAAGAACTaGGCCTTCCAGGTACAGTAT +
Preference number: 4 (lower is better)
Translates to: DPPTPNFMALVELVHVSLLKHKN*AFQVQY
Trigger: ATACTGTACCTGGAAGGCTCAGTTCTTGTGTTTGAG...CAGGGACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp ACACTGATGACCTGTGGTGTTTCCATCACAGAACAGGCCTTTAATGACCCTCCCCTCAAACACAAGAACTaGGCCTTCCAGGTACAGTAT +
Preference number: 4 (lower is better)
Translates to: TLMTCGVSITEQAFNDPPLKHKN*AFQVQY
Trigger: ATACTGTACCTGGAAGGCTCAGTTCTTGTGTTTGAG...GGGAGGGTCATTAAAGGCCTGTTCTGTGATGGAAACACCACAGGTCATCAGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp TTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGCTAGCTGGTTCTCCTTaGGCTGCTGCAGTGAGCCAT +
Preference number: 4 (lower is better)
Translates to: FNDPPTPNFMALVELVHVLAGSP*AAAVSH
Trigger: ATGGCTCACTGCAGCAGCTCAAGGAGAACCAGCTAG...CACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp TCTGTGTTTGGATTTGCCTCCCCTGAGCATATCTACTTTGGAGTCTCACATGTGACAGACCAAGCCTCGTaGCGTCTTTCTCCTCATCTT +
Preference number: 4 (lower is better)
Translates to: SVFGFASPEHIYFGVSHVTDQAS*RLSPHL
Trigger: AAGATGAGGAGAAAGACGGCACGAGGCTTGGTCTGT...CACATGTGAGACTCCAAAGTAGATATGCTCAGGGGAGGCAAATCCAAACACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR GCA 90 bp GCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATAGCTTTGGGGACAGCTaGTGGACTGAACTTGGAGGT +
Preference number: 4 (lower is better)
Translates to: AFNDPPTPNFMALVELVHSFGDS*WTELGG
Trigger: ACCTCCAAGTTCAGTCCAGCAGCTGTCCCCAAAGCT...ATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp GCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGGCCCAGGTTGGAGATaGTCTCAAGTTCAAGGAAGC +
Preference number: 4 (lower is better)
Translates to: AFNDPPTPNFMALVELVHGPGWR*SQVQGS
Trigger: GCTTCCTTGAACTTGAGACCATCTCCAACCTGGGCC...ATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp TTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGCCTCCTCTGCACTGCTaGTTGAGTAGGAGTCCTGGT +
Preference number: 4 (lower is better)
Translates to: FNDPPTPNFMALVELVHVPPLHC*LSRSPG
Trigger: ACCAGGACTCCTACTCAACCAGCAGTGCAGAGGAGG...CACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CCA 90 bp TTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGTCCTCCTCTGCACTGCTaGTTGAGTAGGAGTCCTGGT +
Preference number: 4 (lower is better)
Translates to: LMTLPLPILWHWLNLSMCPPLHC*LSRSPG
Trigger: ACCAGGACTCCTACTCAACCAGCAGTGCAGAGGAGG...ACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp ACTAAGAACTTGGTGCCTCAGGCAATGACTCTACCTGATTGGCTTAGGCATGCTGCAGTAAGTCTCTACTaGCACAGTAGAACGCAATCA +
Preference number: 4 (lower is better)
Translates to: TKNLVPQAMTLPDWLRHAAVSLY*HSRTQS
Trigger: TGATTGCGTTCTACTGTGTCAGTAGAGACTTACTGC...AGCATGCCTAAGCCAATCAGGTAGAGTCATTGCCTGAGGCACCAAGTTCTTAGT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp TCATTTATCAAATGGGTTTCTCCTCCTCTTCCTCCTCCTCCTTTTGGTATAAAAGGGGCAGCCGTAGAGTaGAGGGCAGTAAGTCTCTAC +
Preference number: 4 (lower is better)
Translates to: SFIKWVSPPLPPPPFGIKGAAVE*RAVSLY
Trigger: GTAGAGACTTACTGCCCTTCACTCTACGGCTGCCCC...TTTTATACCAAAAGGAGGAGGAGGAAGAGGAGGAGAAACCCATTTGATAAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR GCA 90 bp GCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATACACACAGCACCAATTaGTTCAGGTTGTTGTCCCGG +
Preference number: 4 (lower is better)
Translates to: AFNDPPTPNFMALVELVHTHSTN*FRLLSR
Trigger: CCGGGACAACAACCTGAAGCAATTGGTGCTGTGTGT...ATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CAA 72 bp GCCCGTTATCAGTCACTCCCATCCAGTGTTAATGGTTaGAATGTGAACTATCCATTGCGGGCTCATGGGTTT +
Preference number: 4 (lower is better)
Translates to: ARYQSLPSSVNG*NVNYPLRAHGF
Trigger: AAACCCATGAGCCCGCAATGGATAGTTCACATTCAAACCATTAACACTGGATGGGAGTGACTGATAACGGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR TCA 90 bp ACTAAGAACTTGGTGCCTCAGGCAATGACTCTACCTGATTGGCTTAGGCATGCTAGAACGCAATCAGTCTaGAGATGTCCTCAAACACAA +
Preference number: 4 (lower is better)
Translates to: TKNLVPQAMTLPDWLRHARTQSV*RCPQTQ
Trigger: TTGTGTTTGAGGACATCTTCAGACTGATTGCGTTCT...AGCATGCCTAAGCCAATCAGGTAGAGTCATTGCCTGAGGCACCAAGTTCTTAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR TCA 90 bp GCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGATTTTCTTCCCTGGTaGGTAGGCTTTGTGCATGCT +
Preference number: 4 (lower is better)
Translates to: AFNDPPTPNFMALVELVHDFLPW*VGFVHA
Trigger: AGCATGCACAAAGCCTACTCACCAGGGAAGAAAATC...ATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR GCA 90 bp TTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGTAGTAGGCTTTGTGCATaGTGGTCAGCTTCTGCAGGA +
Preference number: 4 (lower is better)
Translates to: LMTLPLPILWHWLNLSMCSRLCA*WSASAG
Trigger: TCCTGCAGAAGCTGACCAGCATGCACAAAGCCTACT...ACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
3UTR CAA 72 bp CTGGAGTTTATAGCTTGGTCCTTTTCTTGCCCTCTCTaGCTTTTTGGTGGAGATGTGGAAGATGTCCTAGTC +
Preference number: 4 (lower is better)
Translates to: LEFIAWSFSCPL*LFGGDVEDVLV
Trigger: GACTAGGACATCTTCCACATCTCCACCAAAAAGCAAGAGAGGGCAAGAAAAGGACCAAGCTATAAACTCCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR CCA 90 bp TTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGTAGGTCTTCAGCAAGATaGAGATTTTCTTCCCTGGTG +
Preference number: 4 (lower is better)
Translates to: LMTLPLPILWHWLNLSMCRSSAR*RFSSLV
Trigger: CACCAGGGAAGAAAATCTCCATCTTGCTGAAGACCT...ACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 90 bp CGGGAGGCCCGCGCTTTGTTGAGCGTGCGCCTGCGTTCCCAGCGATaGATGGAGTCCTGCACCTCCACGCTCAGCTGTCGGGTCACTGTG +
Preference number: 5 (lower is better)
Translates to: REARALLSVRLRSQR*MESCTSTLSCRVTV
Trigger: CACAGTGACCCGACAGCTGAGCGTGGAGGTGCAGGACTCCATCCATCGCTGGGAACGCAGGCGCACGCTCAACAAAGCGCGGGCCTCCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS TCA 90 bp CACGTTGGGGCTGCTGAACTCCAGCTCCTCCTCTGCACTGCTGGTTaGGTAGGAGTCCTGGTCAGCGGCCGAGGCAGGCACCCCCAGGCT +
Preference number: 5 (lower is better)
Translates to: HVGAAELQLLLCTAG*VGVLVSGRGRHPQA
Trigger: AGCCTGGGGGTGCCTGCCTCGGCCGCTGACCAGGACTCCTACTCAACCAGCAGTGCAGAGGAGGAGCTGGAGTTCAGCAGCCCCAACGTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS TCA 90 bp CCAGGTCGGTGGTGGTGGTGGCCAGGACCACTAGCTGGTTCTCCTTaGGCTGCTGCAGTGAGCCATCCCGGCTGTGGATCTCCAGCAGGC +
Preference number: 5 (lower is better)
Translates to: PGRWWWWPGPLAGSP*AAAVSHPGCGSPAG
Trigger: GCCTGCTGGAGATCCACAGCCGGGATGGCTCACTGCAGCAGCTCAAGGAGAACCAGCTAGTGGTCCTGGCCACCACCACCACCGACCTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 90 bp TCAGCGGCCGAGGCAGGCACCCCCAGGCTGTCTGAGAGTGAGGCCTaGGAACCCTTGAACTCTGGAGAGCTTTGGGGACAGCTGCTGGAC +
Preference number: 5 (lower is better)
Translates to: SAAEAGTPRLSESEA*EPLNSGELWGQLLD
Trigger: GTCCAGCAGCTGTCCCCAAAGCTCTCCAGAGTTCAAGGGTTCCCAGGCCTCACTCTCAGACAGCCTGGGGGTGCCTGCCTCGGCCGCTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp CCCGAGGGTCAGGGAGCAGCTGGGGCCAGGAACCCCTTCATTAGCCAGTCCTGGAGCATCTCAGTGAGGTaGCTGCGGGCCAGCACGTAC +
Preference number: 5 (lower is better)
Translates to: PEGQGAAGARNPFISQSWSISVR*LRASTY
Trigger: GTACGTGCTGGCCCGCAGCAACCTCACTGAGATGCT...CCAGGACTGGCTAATGAAGGGGTTCCTGGCCCCAGCTGCTCCCTGACCCTCGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp GTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTGAGGCCCGCGCTTTGTaGAGCGTGCGCCTGCGTTCC +
Preference number: 5 (lower is better)
Translates to: VPGAGLVASSGAQEPRCTEARAL*SVRLRS
Trigger: GGAACGCAGGCGCACGCTCAACAAAGCGCGGGCCTC...AGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS TCA 90 bp GCTGCAGCCACACAGGGCAGGTCTTCACCAGCTTCTCCAGGACACTaGTGCCCCGGCGTGGGATGCAGTTCCTCGGGGTGGTTGACAGAC +
Preference number: 5 (lower is better)
Translates to: AAATQGRSSPASPGH*CPGVGCSSSGWLTD
Trigger: GTCTGTCAACCACCCCGAGGAACTGCATCCCACGCCGGGGCATCAGTGTCCTGGAGAAGCTGGTGAAGACCTGCCCTGTGTGGCTGCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056950.14
ENSMUST00000101114.11
ENSMUST00000150795.8
CDS TCA 90 bp GCAGCGCCCGTCCACCAGCACGAAGAGCCGGTAGTCTTGGGGCTGTaGCACCTCAAACTTCTCAGCGCACTGTGCACACAGTGCCTGGGC +
Preference number: 5 (lower is better)
Translates to: AAPVHQHEEPVVLGL*HLKLLSALCTQCLG
Trigger: GCCCAGGCACTGTGTGCACAGTGCGCTGAGAAGTTTGAGGTGTCACAGCCCCAAGACTACCGGCTCTTCGTGCTGGTGGACGGGCGCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 90 bp GTGGTCACACCCAGGTCGGTGGTGGTGGTGGCCAGGACCACTAGCTaGTTCTCCTTGAGCTGCTGCAGTGAGCCATCCCGGCTGTGGATC +
Preference number: 5 (lower is better)
Translates to: VVTPRSVVVVARTTS*FSLSCCSEPSRLWI
Trigger: GATCCACAGCCGGGATGGCTCACTGCAGCAGCTCAAGGAGAACCAGCTAGTGGTCCTGGCCACCACCACCACCGACCTGGGTGTGACCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS TCA 90 bp AGGGGTCCCAGGGGCTGGGCTTCTGAGTGGCTCTGCAGAGCCTCTTaGGTTCAGCGAGGAGTCCCAGAAACCCAGGCCCAGGTTGGAGAT +
Preference number: 5 (lower is better)
Translates to: RGPRGWASEWLCRAS*VQRGVPETQAQVGD
Trigger: ATCTCCAACCTGGGCCTGGGTTTCTGGGACTCCTCGCTGAACTCAAGAGGCTCTGCAGAGCCACTCAGAAGCCCAGCCCCTGGGACCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS GCA 90 bp GTGGTGGTGGTGGCCAGGACCACTAGCTGGTTCTCCTTGAGCTGCTaGAGTGAGCCATCCCGGCTGTGGATCTCCAGCAGGCTGGAGTTG +
Preference number: 5 (lower is better)
Translates to: VVVVARTTSWFSLSC*SEPSRLWISSRLEL
Trigger: CAACTCCAGCCTGCTGGAGATCCACAGCCGGGATGGCTCACTGCAGCAGCTCAAGGAGAACCAGCTAGTGGTCCTGGCCACCACCACCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 90 bp GCCGGGAGACCCGCTTCTTCCTTGGGGGTGGTACTGGGGGTTGTTTaGCCTTCCCAGGAGGCACTGGTATGCTGTCAGCATGGCTGGCTT +
Preference number: 5 (lower is better)
Translates to: AGRPASSLGVVLGVV*PSQEALVCCQHGWL
Trigger: AAGCCAGCCATGCTGACAGCATACCAGTGCCTCCTGGGAAGGCCAAACAACCCCCAGTACCACCCCCAAGGAAGAAGCGGGTCTCCCGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 90 bp GGCTGTGACACCTCAAACTTCTCAGCGCACTGTGCACACAGTGCCTaGGCTGCTGTGTCTGCCCGTGACGCCAGTGTCCGTGACTGCTGC +
Preference number: 5 (lower is better)
Translates to: GCDTSNFSAHCAHSA*AAVSARDASVRDCC
Trigger: GCAGCAGTCACGGACACTGGCGTCACGGGCAGACACAGCAGCCCAGGCACTGTGTGCACAGTGCGCTGAGAAGTTTGAGGTGTCACAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp CCCGAGGGTCAGGGAGCAGCTGGGGCCAGGAACCCCTTCATTAGCCAGTCCTGGCTATACAGGGCTGGCTaGAAGCATCCTTGCCGCTGT +
Preference number: 5 (lower is better)
Translates to: PEGQGAAGARNPFISQSWLYRAG*KHPCRC
Trigger: ACAGCGGCAAGGATGCTTCAAGCCAGCCCTGTATAG...CCAGGACTGGCTAATGAAGGGGTTCCTGGCCCCAGCTGCTCCCTGACCCTCGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS TCA 90 bp CAGGACACTGATGCCCCGGCGTGGGATGCAGTTCCTCGGGGTGGTTaGCAGACCAAGCCTCGTGCCGTCTTTCTCCTCATCTTCCTCTCC +
Preference number: 5 (lower is better)
Translates to: QDTDAPAWDAVPRGG*QTKPRAVFLLIFLS
Trigger: GGAGAGGAAGATGAGGAGAAAGACGGCACGAGGCTTGGTCTGTCAACCACCCCGAGGAACTGCATCCCACGCCGGGGCATCAGTGTCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056950.14
ENSMUST00000101114.11
ENSMUST00000150795.8
CDS CCA 90 bp ATGGCTGGCTTTGGCCTCTGTGTCCTGGCTTTGCTCCGTGGTCCTTaGAGGCCTGTCCCCAAGGCTACTTACGGTGCTCTGGGGAGGAAG +
Preference number: 5 (lower is better)
Translates to: MAGFGLCVLALLRGP*RPVPKATYGALGRK
Trigger: CTTCCTCCCCAGAGCACCGTAAGTAGCCTTGGGGACAGGCCTCCAAGGACCACGGAGCAAAGCCAGGACACAGAGGCCAAAGCCAGCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 90 bp TGGCCTTCCCAGGAGGCACTGGTATGCTGTCAGCATGGCTGGCTTTaGCCTCTGTGTCCTGGCTTTGCTCCGTGGTCCTTGGAGGCCTGT +
Preference number: 5 (lower is better)
Translates to: WPSQEALVCCQHGWL*PLCPGFAPWSLEAC
Trigger: ACAGGCCTCCAAGGACCACGGAGCAAAGCCAGGACACAGAGGCCAAAGCCAGCCATGCTGACAGCATACCAGTGCCTCCTGGGAAGGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 90 bp TCCACCACCTTCTTATACAGTTTGCGGTCGCTGGAGAGGAAGGCATaGAAGACGCTGGCGAAGCTGACGAAGCTGAGGCGGTGGCGGGCC +
Preference number: 5 (lower is better)
Translates to: STTFLYSLRSLERKA*KTLAKLTKLRRWRA
Trigger: GGCCCGCCACCGCCTCAGCTTCGTCAGCTTCGCCAGCGTCTTCCATGCCTTCCTCTCCAGCGACCGCAAACTGTATAAGAAGGTGGTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp CCCGAGGGTCAGGGAGCAGCTGGGGCCAGGAACCCCTTCATTAGCCAGTCCTGGGGTTCCACCAAGGCTTaGAGTTCAGTGCTCTGTAGC +
Preference number: 5 (lower is better)
Translates to: PEGQGAAGARNPFISQSWGSTKA*SSVLCS
Trigger: GCTACAGAGCACTGAACTCAAAGCCTTGGTGGAACC...CCAGGACTGGCTAATGAAGGGGTTCCTGGCCCCAGCTGCTCCCTGACCCTCGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp AGAGCGGCCAATGAGAGCCCAGTCCCAATCCCTCTAGCCTCCTCTCAGGAGATCTCCAGCAGGCTGGAGTaGATGGCCTCCTTCAGGGGC +
Preference number: 5 (lower is better)
Translates to: RAANESPVPIPLASSQEISSRLE*MASFRG
Trigger: GCCCCTGAAGGAGGCCATCAACTCCAGCCTGCTGGA...GATCTCCTGAGAGGAGGCTAGAGGGATTGGGACTGGGCTCTCATTGGCCGCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS TCA 90 bp AGGCAGGCACCCCCAGGCTGTCTGAGAGTGAGGCCTGGGAACCCTTaGACTCTGGAGAGCTTTGGGGACAGCTGCTGGACTGAACTTGGA +
Preference number: 5 (lower is better)
Translates to: RQAPPGCLRVRPGNP*TLESFGDSCWTELG
Trigger: TCCAAGTTCAGTCCAGCAGCTGTCCCCAAAGCTCTCCAGAGTTCAAGGGTTCCCAGGCCTCACTCTCAGACAGCCTGGGGGTGCCTGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 90 bp CGCACTACTATACAGGGCTGGCTTGAAGCATCCTTGCCGCTGTCCTaGGGCCGGTACACGAAGTGGAAGTCTCGTTTGGGCTCGCTCCGA +
Preference number: 5 (lower is better)
Translates to: RTTIQGWLEASLPLS*GRYTKWKSRLGSLR
Trigger: TCGGAGCGAGCCCAAACGAGACTTCCACTTCGTGTACCGGCCCCAGGACAGCGGCAAGGATGCTTCAAGCCAGCCCTGTATAGTAGTGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp CCTGAGAGCACAGAAAGGCTGGCAAAGCTGCGCCTTGCCTGTACCAGGGCCAGGACCAATTGCTTCAGGTaGTTGTCCCGGCACACCAGG +
Preference number: 5 (lower is better)
Translates to: PESTERLAKLRLACTRARTNCFR*LSRHTR
Trigger: CCTGGTGTGCCGGGACAACAACCTGAAGCAATTGGT...CCTGGCCCTGGTACAGGCAAGGCGCAGCTTTGCCAGCCTTTCTGTGCTCTCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS-3UTR CAA 90 bp TGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTAGGCACTCTGGTAGCTTTTGCTCCGTGGTCCTaGGAGGCCTGTCCCCAAGGC +
Preference number: 5 (lower is better)
Translates to: WLLPVELRSPVVLGTLVAFAPWS*EACPQG
Trigger: GCCTTGGGGACAGGCCTCCAAGGACCACGGAGCAAA...AGCTACCAGAGTGCCTAGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp GGCAGGGATGTGTGGTTAAGGAGAGCGGCCAATGAGAGCCCAGTCCCAATCCCTGCTGCTGGACTGAACTaGGAGGTGCTGCATGCCAGC +
Preference number: 5 (lower is better)
Translates to: GRDVWLRRAANESPVPIPAAGLN*EVLHAS
Trigger: GCTGGCATGCAGCACCTCCAAGTTCAGTCCAGCAGC...AGGGATTGGGACTGGGCTCTCATTGGCCGCTCTCCTTAACCACACATCCCTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp GTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTGAGGCCTGGGAACCCTaGAACTCTGGAGAGCTTTGG +
Preference number: 5 (lower is better)
Translates to: VPGAGLVASSGAQEPRCTEAWEP*NSGELW
Trigger: CCAAAGCTCTCCAGAGTTCAAGGGTTCCCAGGCCTC...AGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp GAGACAGGACCAGGAGAATTGCCTGAGGAACCTGGTGTGAGCAGGGTTGGGCTTTCCAGCAGGCTGGAGTaGATGGCCTCCTTCAGGGGC +
Preference number: 5 (lower is better)
Translates to: ETGPGELPEEPGVSRVGLSSRLE*MASFRG
Trigger: GCCCCTGAAGGAGGCCATCAACTCCAGCCTGCTGGA...AAGCCCAACCCTGCTCACACCAGGTTCCTCAGGCAATTCTCCTGGTCCTGTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp GGAACCCCTTCATTAGCCAGTCCTGGGGAAAGTGAGCTCTTCTCAGGAAAGACTCGGGAGGCCCGCGCTTaGTTGAGCGTGCGCCTGCGT +
Preference number: 5 (lower is better)
Translates to: GTPSLASPGESELFSGKTREARA*LSVRLR
Trigger: ACGCAGGCGCACGCTCAACAAAGCGCGGGCCTCCCG...AGTCTTTCCTGAGAAGAGCTCACTTTCCCCAGGACTGGCTAATGAAGGGGTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp ATACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCCGGGAGGCCCGCGCTTaGTTGAGCGTGCGCCTGCGT +
Preference number: 5 (lower is better)
Translates to: ILLDLGLWWNISAPSPRVREARA*LSVRLR
Trigger: ACGCAGGCGCACGCTCAACAAAGCGCGGGCCTCCCG...GACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS TCA 90 bp GAAGCTGACGAAGCTGAGGCGGTGGCGGGCCTTGTCCAGGATCATTaGGGGTTTCTTCTTCACGTTGGGGCTGCTGAACTCCAGCTCCTC +
Preference number: 5 (lower is better)
Translates to: EADEAEAVAGLVQDH*GFLLHVGAAELQLL
Trigger: GAGGAGCTGGAGTTCAGCAGCCCCAACGTGAAGAAGAAACCCTCAATGATCCTGGACAAGGCCCGCCACCGCCTCAGCTTCGTCAGCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS TCA 90 bp AGTAGGCTTTGTGCATGCTGGTCAGCTTCTGCAGGATCTTCTCCATaGCAGCCACCTCAGGCACGCTGGTGGTCACACCCAGGTCGGTGG +
Preference number: 5 (lower is better)
Translates to: SRLCACWSASAGSSP*QPPQARWWSHPGRW
Trigger: CCACCGACCTGGGTGTGACCACCAGCGTGCCTGAGGTGGCTGTCATGGAGAAGATCCTGCAGAAGCTGACCAGCATGCACAAAGCCTACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS GCA 90 bp GTGCTGCATGCCAGCTTGCCGGACAGGACTCAAGCCTTCCCAAGATaGACCAGTCGCCTGTTTCTCAGAGGATGCCTCCTGTATGGGGCT +
Preference number: 5 (lower is better)
Translates to: VLHASLPDRTQAFPR*TSRLFLRGCLLYGA
Trigger: AGCCCCATACAGGAGGCATCCTCTGAGAAACAGGCGACTGGTGCATCTTGGGAAGGCTTGAGTCCTGTCCGGCAAGCTGGCATGCAGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS GCA 90 bp GAGAGCTTTGGGGACAGCTGCTGGACTGAACTTGGAGGTGCTGCATaGCAGCTTGCCGGACAGGACTCAAGCCTTCCCAAGATGCACCAG +
Preference number: 5 (lower is better)
Translates to: ESFGDSCWTELGGAA*QLAGQDSSLPKMHQ
Trigger: CTGGTGCATCTTGGGAAGGCTTGAGTCCTGTCCGGCAAGCTGGCATGCAGCACCTCCAAGTTCAGTCCAGCAGCTGTCCCCAAAGCTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 90 bp GGGTACTCCAGCACCTCAGCTGAGCTGCCCTTCAGGGAAGGGAAGTaGACACACAGCACCAATTGCTTCAGGTTGTTGTCCCGGCACACC +
Preference number: 5 (lower is better)
Translates to: GYSSTSAELPFREGK*THSTNCFRLLSRHT
Trigger: GGTGTGCCGGGACAACAACCTGAAGCAATTGGTGCTGTGTGTCCACTTCCCTTCCCTGAAGGGCAGCTCAGCTGAGGTGCTGGAGTACCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000056950.14
ENSMUST00000101114.11
ENSMUST00000133820.2
ENSMUST00000150795.8
CDS CCA 90 bp GTTGTTTGGCCTTCCCAGGAGGCACTGGTATGCTGTCAGCATGGCTaGCTTTGGCCTCTGTGTCCTGGCTTTGCTCCGTGGTCCTTGGAG +
Preference number: 5 (lower is better)
Translates to: VVWPSQEALVCCQHG*LWPLCPGFAPWSLE
Trigger: CTCCAAGGACCACGGAGCAAAGCCAGGACACAGAGGCCAAAGCCAGCCATGCTGACAGCATACCAGTGCCTCCTGGGAAGGCCAAACAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp GTCCCTGGAGCTGGCTTGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTAGTGGTCCCTGTCTGTaGAAGTCCCCACATTCTGGC +
Preference number: 5 (lower is better)
Translates to: VPGAGLVASSGAQEPRCTSGPCL*KSPHSG
Trigger: GCCAGAATGTGGGGACTTCAACAGACAGGGACCACT...AGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCAAGCCAGCTCCAGGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp GAGACAGGACCAGGAGAATTGCCTGAGGAACCTGGTGTGAGCAGGGTTGGGCTTCTCTGTGTCCTGGCTTaGCTCCGTGGTCCTTGGAGG +
Preference number: 5 (lower is better)
Translates to: ETGPGELPEEPGVSRVGLLCVLA*LRGPWR
Trigger: CCTCCAAGGACCACGGAGCAAAGCCAGGACACAGAG...AAGCCCAACCCTGCTCACACCAGGTTCCTCAGGCAATTCTCCTGGTCCTGTCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp GAGACAGGACCAGGAGAATTGCCTGAGGAACCTGGTGTGAGCAGGGTTGGGCTTAGACCCGCTTCTTCCTaGGGGGTGGTACTGGGGGTT +
Preference number: 5 (lower is better)
Translates to: ETGPGELPEEPGVSRVGLRPASS*GVVLGV
Trigger: AACCCCCAGTACCACCCCCAAGGAAGAAGCGGGTCT...AAGCCCAACCCTGCTCACACCAGGTTCCTCAGGCAATTCTCCTGGTCCTGTCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp CTAGATGGCAGGGATGTGTGGTTAAGGAGAGCGGCCAATGAGAGCCCAGTCCCAAGACCCGCTTCTTCCTaGGGGGTGGTACTGGGGGTT +
Preference number: 5 (lower is better)
Translates to: LDGRDVWLRRAANESPVPRPASS*GVVLGV
Trigger: AACCCCCAGTACCACCCCCAAGGAAGAAGCGGGTCT...TGGGACTGGGCTCTCATTGGCCGCTCTCCTTAACCACACATCCCTGCCATCTAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp GGAACCCCTTCATTAGCCAGTCCTGGGGAAAGTGAGCTCTTCTCAGGAAAGACTGAGGCCCGCGCTTTGTaGAGCGTGCGCCTGCGTTCC +
Preference number: 5 (lower is better)
Translates to: GTPSLASPGESELFSGKTEARAL*SVRLRS
Trigger: GGAACGCAGGCGCACGCTCAACAAAGCGCGGGCCTC...AGTCTTTCCTGAGAAGAGCTCACTTTCCCCAGGACTGGCTAATGAAGGGGTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS TCA 90 bp TGGGAACCCTTGAACTCTGGAGAGCTTTGGGGACAGCTGCTGGACTaGACTTGGAGGTGCTGCATGCCAGCTTGCCGGACAGGACTCAAG +
Preference number: 5 (lower is better)
Translates to: WEPLNSGELWGQLLD*TWRCCMPACRTGLK
Trigger: CTTGAGTCCTGTCCGGCAAGCTGGCATGCAGCACCTCCAAGTTCAGTCCAGCAGCTGTCCCCAAAGCTCTCCAGAGTTCAAGGGTTCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS GCA 90 bp GCTGAGCTGCCCTTCAGGGAAGGGAAGTGGACACACAGCACCAATTaGTTCAGGTTGTTGTCCCGGCACACCAGGAACATCCCAGCCATC +
Preference number: 5 (lower is better)
Translates to: AELPFREGKWTHSTN*FRLLSRHTRNIPAI
Trigger: GATGGCTGGGATGTTCCTGGTGTGCCGGGACAACAACCTGAAGCAATTGGTGCTGTGTGTCCACTTCCCTTCCCTGAAGGGCAGCTCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056950.14
ENSMUST00000101114.11
ENSMUST00000150795.8
CDS GCA 90 bp AGTTGGGTTCCCGCACTACTATACAGGGCTGGCTTGAAGCATCCTTaGCGCTGTCCTGGGGCCGGTACACGAAGTGGAAGTCTCGTTTGG +
Preference number: 5 (lower is better)
Translates to: SWVPALLYRAGLKHP*RCPGAGTRSGSLVW
Trigger: CCAAACGAGACTTCCACTTCGTGTACCGGCCCCAGGACAGCGGCAAGGATGCTTCAAGCCAGCCCTGTATAGTAGTGCGGGAACCCAACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 90 bp TCCGTGGTCCTTGGAGGCCTGTCCCCAAGGCTACTTACGGTGCTCTaGGGAGGAAGGTTGAGTGATGCTGTCCTAGAAATGCCTGAGTGG +
Preference number: 5 (lower is better)
Translates to: SVVLGGLSPRLLTVL*GGRLSDAVLEMPEW
Trigger: CCACTCAGGCATTTCTAGGACAGCATCACTCAACCTTCCTCCCCAGAGCACCGTAAGTAGCCTTGGGGACAGGCCTCCAAGGACCACGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 90 bp AGGAAGGCATGGAAGACGCTGGCGAAGCTGACGAAGCTGAGGCGGTaGCGGGCCTTGTCCAGGATCATTGAGGGTTTCTTCTTCACGTTG +
Preference number: 5 (lower is better)
Translates to: RKAWKTLAKLTKLRR*RALSRIIEGFFFTL
Trigger: CAACGTGAAGAAGAAACCCTCAATGATCCTGGACAAGGCCCGCCACCGCCTCAGCTTCGTCAGCTTCGCCAGCGTCTTCCATGCCTTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp GTGAGCAGGGTTGGGCTTGTTTGCTGCAGCTGGCAAGAGCCTCTTCCACCTGAGAGTGGTCCCTGTCTGTaGAAGTCCCCACATTCTGGC +
Preference number: 5 (lower is better)
Translates to: VSRVGLVCCSWQEPLPPESGPCL*KSPHSG
Trigger: GCCAGAATGTGGGGACTTCAACAGACAGGGACCACT...CTCAGGTGGAAGAGGCTCTTGCCAGCTGCAGCAAACAAGCCCAACCCTGCTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp AGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGGGAGCAGAGGCCTGGGAACCCTaGAACTCTGGAGAGCTTTGG +
Preference number: 5 (lower is better)
Translates to: RSWVVVEHLSSIPEGQGAEAWEP*NSGELW
Trigger: CCAAAGCTCTCCAGAGTTCAAGGGTTCCCAGGCCTC...TGCTCCCTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp TGGTTGCTTCCAGTGGAGCTCAGGAGCCCCGTTGTACTAGGCACTCTGGTAGCTCCTCTGCACTGCTGGTaGAGTAGGAGTCCTGGTCAG +
Preference number: 5 (lower is better)
Translates to: WLLPVELRSPVVLGTLVAPLHCW*SRSPGQ
Trigger: CTGACCAGGACTCCTACTCAACCAGCAGTGCAGAGG...AGCTACCAGAGTGCCTAGTACAACGGGGCTCCTGAGCTCCACTGGAAGCAACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp AGAGCGGCCAATGAGAGCCCAGTCCCAATCCCTCTAGCCTCCTCTCAGGAGATCAAGTGGAAGTCTCGTTaGGGCTCGCTCCGAAGCAGA +
Preference number: 5 (lower is better)
Translates to: RAANESPVPIPLASSQEIKWKSR*GSLRSR
Trigger: TCTGCTTCGGAGCGAGCCCAAACGAGACTTCCACTT...GATCTCCTGAGAGGAGGCTAGAGGGATTGGGACTGGGCTCTCATTGGCCGCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp AGAGCGGCCAATGAGAGCCCAGTCCCAATCCCTCTAGCCTCCTCTCAGGAGATCCTATACAGGGCTGGCTaGAAGCATCCTTGCCGCTGT +
Preference number: 5 (lower is better)
Translates to: RAANESPVPIPLASSQEILYRAG*KHPCRC
Trigger: ACAGCGGCAAGGATGCTTCAAGCCAGCCCTGTATAG...GATCTCCTGAGAGGAGGCTAGAGGGATTGGGACTGGGCTCTCATTGGCCGCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp CTAGATGGCAGGGATGTGTGGTTAAGGAGAGCGGCCAATGAGAGCCCAGTCCCAACCAATTGCTTCAGGTaGTTGTCCCGGCACACCAGG +
Preference number: 5 (lower is better)
Translates to: LDGRDVWLRRAANESPVPTNCFR*LSRHTR
Trigger: CCTGGTGTGCCGGGACAACAACCTGAAGCAATTGGT...TGGGACTGGGCTCTCATTGGCCGCTCTCCTTAACCACACATCCCTGCCATCTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp ATACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCTTTGCTCCGTGGTCCTaGGAGGCCTGTCCCCAAGGC +
Preference number: 5 (lower is better)
Translates to: ILLDLGLWWNISAPSPRVFAPWS*EACPQG
Trigger: GCCTTGGGGACAGGCCTCCAAGGACCACGGAGCAAA...GACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp ACTCTTAGATCTTGGGTTGTGGTGGAACATCTCAGCTCCATCCCCGAGGGTCAGAGCATCTCAGTGAGGTaGCTGCGGGCCAGCACGTAC +
Preference number: 5 (lower is better)
Translates to: TLRSWVVVEHLSSIPEGQSISVR*LRASTY
Trigger: GTACGTGCTGGCCCGCAGCAACCTCACTGAGATGCT...CTGACCCTCGGGGATGGAGCTGAGATGTTCCACCACAACCCAAGATCTAAGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 90 bp GAGATGGTCTCAAGTTCAAGGAAGCTGCTAGCTTCGAGGATGGCCTaGGGCAGCCGTAGAGTGAAGGGCAGTAAGTCTCTACTGACACAG +
Preference number: 5 (lower is better)
Translates to: EMVSSSRKLLASRMA*GSRRVKGSKSLLTQ
Trigger: CTGTGTCAGTAGAGACTTACTGCCCTTCACTCTACGGCTGCCCCAGGCCATCCTCGAAGCTAGCAGCTTCCTTGAACTTGAGACCATCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056950.14
ENSMUST00000101114.11
ENSMUST00000133820.2
CDS CCA 90 bp CTAGAAATGCCTGAGTGGTCCCTGTCTGTTGAAGTCCCCACATTCTaGCTTTCCAGAGATACCCTCTCAGAAATGCGCCTCCTGGGAGGG +
Preference number: 5 (lower is better)
Translates to: LEMPEWSLSVEVPTF*LSRDTLSEMRLLGG
Trigger: CCCTCCCAGGAGGCGCATTTCTGAGAGGGTATCTCTGGAAAGCCAGAATGTGGGGACTTCAACAGACAGGGACCACTCAGGCATTTCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp GACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGTCCCTGCTCTGTGTCCTGGCTTaGCTCCGTGGTCCTTGGAGG +
Preference number: 5 (lower is better)
Translates to: DPPTPNFMALVELVHVSLLCVLA*LRGPWR
Trigger: CCTCCAAGGACCACGGAGCAAAGCCAGGACACAGAG...CAGGGACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp ACTAAGAACTTGGTGCCTCAGGCAATGACTCTACCTGATTGGCTTAGGCATGCTGGGTGGTACTGGGGGTaGTTTGGCCTTCCCAGGAGG +
Preference number: 5 (lower is better)
Translates to: TKNLVPQAMTLPDWLRHAGWYWG*FGLPRR
Trigger: CCTCCTGGGAAGGCCAAACAACCCCCAGTACCACCC...AGCATGCCTAAGCCAATCAGGTAGAGTCATTGCCTGAGGCACCAAGTTCTTAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp AGGCCTTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCGGGTGGTACTGGGGGTaGTTTGGCCTTCCCAGGAGG +
Preference number: 5 (lower is better)
Translates to: RPLMTLPLPILWHWLNLSGWYWG*FGLPRR
Trigger: CCTCCTGGGAAGGCCAAACAACCCCCAGTACCACCC...GGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAAGGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp ACACTGATGACCTGTGGTGTTTCCATCACAGAACAGGCCTTTAATGACCCTCCCCCTCTGCACTGCTGGTaGAGTAGGAGTCCTGGTCAG +
Preference number: 5 (lower is better)
Translates to: TLMTCGVSITEQAFNDPPPLHCW*SRSPGQ
Trigger: CTGACCAGGACTCCTACTCAACCAGCAGTGCAGAGG...GGGAGGGTCATTAAAGGCCTGTTCTGTGATGGAAACACCACAGGTCATCAGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS TCA 90 bp CAGTATAGCCTTTTCTTCTTTGATGGGGTACTCCAGCACCTCAGCTaGGCTGCCCTTCAGGGAAGGGAAGTGGACACACAGCACCAATTG +
Preference number: 5 (lower is better)
Translates to: QYSLFFFDGVLQHLS*AALQGREVDTQHQL
Trigger: CAATTGGTGCTGTGTGTCCACTTCCCTTCCCTGAAGGGCAGCTCAGCTGAGGTGCTGGAGTACCCCATCAAAGAAGAAAAGGCTATACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056950.14
ENSMUST00000101114.11
ENSMUST00000133820.2
CDS TCA 90 bp AAAGCTAGCCTTTTCTTCTTTGATGGGGTACTCCAGCACCTCAGCTaGGCTGCCCTTCAGGGAAGGGAAGTGGACACACAGCACCAATTG +
Preference number: 5 (lower is better)
Translates to: KASLFFFDGVLQHLS*AALQGREVDTQHQL
Trigger: CAATTGGTGCTGTGTGTCCACTTCCCTTCCCTGAAGGGCAGCTCAGCTGAGGTGCTGGAGTACCCCATCAAAGAAGAAAAGGCTAGCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
CDS CCA 90 bp CTCTGGGGAGGAAGGTTGAGTGATGCTGTCCTAGAAATGCCTGAGTaGTCCCTGTCTGTTGAAGTCCCCACATTCTGGCTTTCCAGAGAT +
Preference number: 5 (lower is better)
Translates to: LWGGRLSDAVLEMPE*SLSVEVPTFWLSRD
Trigger: ATCTCTGGAAAGCCAGAATGTGGGGACTTCAACAGACAGGGACCACTCAGGCATTTCTAGGACAGCATCACTCAACCTTCCTCCCCAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp AGTAATGAGTCACTGGAACCCAGGACCGGACATCTCATTTCCTCCCCTTTCTCTACCAATTGCTTCAGGTaGTTGTCCCGGCACACCAGG +
Preference number: 5 (lower is better)
Translates to: SNESLEPRTGHLISSPFSTNCFR*LSRHTR
Trigger: CCTGGTGTGCCGGGACAACAACCTGAAGCAATTGGT...AGAGAAAGGGGAGGAAATGAGATGTCCGGTCCTGGGTTCCAGTGACTCATTACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150795.8
CDS-3UTR CAA 90 bp GGAACCCCTTCATTAGCCAGTCCTGGGGAAAGTGAGCTCTTCTCAGGAAAGACTCTCTGGGGAGGAAGGTaGAGTGATGCTGTCCTAGAA +
Preference number: 5 (lower is better)
Translates to: GTPSLASPGESELFSGKTLWGGR*SDAVLE
Trigger: TTCTAGGACAGCATCACTCAACCTTCCTCCCCAGAG...AGTCTTTCCTGAGAAGAGCTCACTTTCCCCAGGACTGGCTAATGAAGGGGTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp ACTAAGAACTTGGTGCCTCAGGCAATGACTCTACCTGATTGGCTTAGGCATGCTACCAATTGCTTCAGGTaGTTGTCCCGGCACACCAGG +
Preference number: 5 (lower is better)
Translates to: TKNLVPQAMTLPDWLRHATNCFR*LSRHTR
Trigger: CCTGGTGTGCCGGGACAACAACCTGAAGCAATTGGT...AGCATGCCTAAGCCAATCAGGTAGAGTCATTGCCTGAGGCACCAAGTTCTTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp GACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGTCCCTGCTCTGGGGAGGAAGGTaGAGTGATGCTGTCCTAGAA +
Preference number: 5 (lower is better)
Translates to: DPPTPNFMALVELVHVSLLWGGR*SDAVLE
Trigger: TTCTAGGACAGCATCACTCAACCTTCCTCCCCAGAG...CAGGGACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp CCTCTTCCACCTGAGCCTTGGTTTCCCTTACATCCAACTAAGAACTTGGTGCCTGGTTCCACCAAGGCTTaGAGTTCAGTGCTCTGTAGC +
Preference number: 5 (lower is better)
Translates to: PLPPEPWFPLHPTKNLVPGSTKA*SSVLCS
Trigger: GCTACAGAGCACTGAACTCAAAGCCTTGGTGGAACC...AGGCACCAAGTTCTTAGTTGGATGTAAGGGAAACCAAGGCTCAGGTGGAAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp ACTAAGAACTTGGTGCCTCAGGCAATGACTCTACCTGATTGGCTTAGGCATGCTAAGTGGAAGTCTCGTTaGGGCTCGCTCCGAAGCAGA +
Preference number: 5 (lower is better)
Translates to: TKNLVPQAMTLPDWLRHAKWKSR*GSLRSR
Trigger: TCTGCTTCGGAGCGAGCCCAAACGAGACTTCCACTT...AGCATGCCTAAGCCAATCAGGTAGAGTCATTGCCTGAGGCACCAAGTTCTTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp TCATGGCAGGTGAGCCTGGAGTTTATAGCTTGGTCCTTTTCTTGCCCTCTCTTGGTTTCCAGGCCCAGGTaGGAGATGGTCTCAAGTTCA +
Preference number: 5 (lower is better)
Translates to: SWQVSLEFIAWSFSCPLLVSRPR*EMVSSS
Trigger: TGAACTTGAGACCATCTCCAACCTGGGCCTGGAAAC...CAAGAGAGGGCAAGAAAAGGACCAAGCTATAAACTCCAGGCTCACCTGCCATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS TCA 90 bp GATGAGCTTGCAGGTCTTCAGCAAGATGGAGATTTTCTTCCCTGGTaGGTAGGCTTTGTGCATGCTGGTCAGCTTCTGCAGGATCTTCTC +
Preference number: 5 (lower is better)
Translates to: DELAGLQQDGDFLPW*VGFVHAGQLLQDLL
Trigger: GAGAAGATCCTGCAGAAGCTGACCAGCATGCACAAAGCCTACTCACCAGGGAAGAAAATCTCCATCTTGCTGAAGACCTGCAAGCTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp TTTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGAAACCCAGGCCCAGGTaGGAGATGGTCTCAAGTTCA +
Preference number: 5 (lower is better)
Translates to: FNDPPTPNFMALVELVHVKPRPR*EMVSSS
Trigger: TGAACTTGAGACCATCTCCAACCTGGGCCTGGGTTT...CACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS-3UTR CAA 90 bp TTAATGACCCTCCCACTCCCAATTTTATGGCATTGGTTGAACTTGTCCATGTGTATCATGTACTCCACGTaGAGGAGCATCTCAGTGAGG +
Preference number: 5 (lower is better)
Translates to: LMTLPLPILWHWLNLSMCIMYST*RSISVR
Trigger: CCTCACTGAGATGCTCCTCAACGTGGAGTACATGAT...ACACATGGACAAGTTCAACCAATGCCATAAAATTGGGAGTGGGAGGGTCATTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS TCA 90 bp ACAGTAGAACGCAATCAGTCTGAAGATGTCCTCAAACACAAGAACTaGGCCTTCCAGGTACAGTATAGCCTTTTCTTCTTTGATGGGGTA +
Preference number: 5 (lower is better)
Translates to: TVERNQSEDVLKHKN*AFQVQYSLFFFDGV
Trigger: TACCCCATCAAAGAAGAAAAGGCTATACTGTACCTGGAAGGCTCAGTTCTTGTGTTTGAGGACATCTTCAGACTGATTGCGTTCTACTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056950.14
ENSMUST00000101114.11
ENSMUST00000133820.2
CDS CCA 72 bp CCACCTCAGGCACGCTGGTGGTCACACCCAGGTCGGTaGTGGTGGTGGCCAGGACCACTAGCTGGTTCTCCT +
Preference number: 6 (lower is better)
Translates to: PPQARWWSHPGR*WWWPGPLAGSP
Trigger: AGGAGAACCAGCTAGTGGTCCTGGCCACCACCACCACCGACCTGGGTGTGACCACCAGCGTGCCTGAGGTGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 72 bp CGCGCTTTGTTGAGCGTGCGCCTGCGTTCCCAGCGATaGATGGAGTCCTGCACCTCCACGCTCAGCTGTCGG +
Preference number: 6 (lower is better)
Translates to: RALLSVRLRSQR*MESCTSTLSCR
Trigger: CCGACAGCTGAGCGTGGAGGTGCAGGACTCCATCCATCGCTGGGAACGCAGGCGCACGCTCAACAAAGCGCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 90 bp CCCAGGTCGGTGGTGGTGGTGGCCAGGACCACTAGCTGGTTCTCCTaGAGCTGCTGCAGTGAGCCATCCCGGCTGTGGATCTCCAGCAGG +
Preference number: 6 (lower is better)
Translates to: PRSVVVVARTTSWFS*SCCSEPSRLWISSR
Trigger: CCTGCTGGAGATCCACAGCCGGGATGGCTCACTGCAGCAGCTCAAGGAGAACCAGCTAGTGGTCCTGGCCACCACCACCACCGACCTGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS TCA 72 bp ACACAGGGCAGGTCTTCACCAGCTTCTCCAGGACACTaGTGCCCCGGCGTGGGATGCAGTTCCTCGGGGTGG +
Preference number: 6 (lower is better)
Translates to: TQGRSSPASPGH*CPGVGCSSSGW
Trigger: CCACCCCGAGGAACTGCATCCCACGCCGGGGCATCAGTGTCCTGGAGAAGCTGGTGAAGACCTGCCCTGTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056950.14
ENSMUST00000101114.11
ENSMUST00000150795.8
CDS TCA 72 bp CAGAGGATGCCTCCTGTATGGGGCTCTCCAAGGGACTaGGAAGGGTTGAGGCCAGCTGCCGGGAGACCCGCT +
Preference number: 6 (lower is better)
Translates to: QRMPPVWGSPRD*EGLRPAAGRPA
Trigger: AGCGGGTCTCCCGGCAGCTGGCCTCAACCCTTCTCAGTCCCTTGGAGAGCCCCATACAGGAGGCATCCTCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS TCA 72 bp GCTGCTGAACTCCAGCTCCTCCTCTGCACTGCTGGTTaGGTAGGAGTCCTGGTCAGCGGCCGAGGCAGGCAC +
Preference number: 6 (lower is better)
Translates to: AAELQLLLCTAG*VGVLVSGRGRH
Trigger: GTGCCTGCCTCGGCCGCTGACCAGGACTCCTACTCAACCAGCAGTGCAGAGGAGGAGCTGGAGTTCAGCAGC
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS GCA 72 bp AGCGTGCGCCTGCGTTCCCAGCGATGGATGGAGTCCTaGACCTCCACGCTCAGCTGTCGGGTCACTGTGATC +
Preference number: 6 (lower is better)
Translates to: SVRLRSQRWMES*TSTLSCRVTVI
Trigger: GATCACAGTGACCCGACAGCTGAGCGTGGAGGTGCAGGACTCCATCCATCGCTGGGAACGCAGGCGCACGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 90 bp ACACAGATGAAGTCCTGCACAGAGGAGCGGGAGGCCCGCGCTTTGTaGAGCGTGCGCCTGCGTTCCCAGCGATGGATGGAGTCCTGCACC +
Preference number: 6 (lower is better)
Translates to: TQMKSCTEEREARAL*SVRLRSQRWMESCT
Trigger: GGTGCAGGACTCCATCCATCGCTGGGAACGCAGGCGCACGCTCAACAAAGCGCGGGCCTCCCGCTCCTCTGTGCAGGACTTCATCTGTGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 90 bp GACACACAGATGAAGTCCTGCACAGAGGAGCGGGAGGCCCGCGCTTaGTTGAGCGTGCGCCTGCGTTCCCAGCGATGGATGGAGTCCTGC +
Preference number: 6 (lower is better)
Translates to: DTQMKSCTEEREARA*LSVRLRSQRWMESC
Trigger: GCAGGACTCCATCCATCGCTGGGAACGCAGGCGCACGCTCAACAAAGCGCGGGCCTCCCGCTCCTCTGTGCAGGACTTCATCTGTGTGTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 90 bp TGCCGGGAGACCCGCTTCTTCCTTGGGGGTGGTACTGGGGGTTGTTaGGCCTTCCCAGGAGGCACTGGTATGCTGTCAGCATGGCTGGCT +
Preference number: 6 (lower is better)
Translates to: CRETRFFLGGGTGGC*AFPGGTGMLSAWLA
Trigger: AGCCAGCCATGCTGACAGCATACCAGTGCCTCCTGGGAAGGCCAAACAACCCCCAGTACCACCCCCAAGGAAGAAGCGGGTCTCCCGGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 90 bp CAGCTGCCGGGAGACCCGCTTCTTCCTTGGGGGTGGTACTGGGGGTaGTTTGGCCTTCCCAGGAGGCACTGGTATGCTGTCAGCATGGCT +
Preference number: 6 (lower is better)
Translates to: QLPGDPLLPWGWYWG*FGLPRRHWYAVSMA
Trigger: AGCCATGCTGACAGCATACCAGTGCCTCCTGGGAAGGCCAAACAACCCCCAGTACCACCCCCAAGGAAGAAGCGGGTCTCCCGGCAGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS GCA 72 bp GTGGCCAGGACCACTAGCTGGTTCTCCTTGAGCTGCTaGAGTGAGCCATCCCGGCTGTGGATCTCCAGCAGG +
Preference number: 6 (lower is better)
Translates to: VARTTSWFSLSC*SEPSRLWISSR
Trigger: CCTGCTGGAGATCCACAGCCGGGATGGCTCACTGCAGCAGCTCAAGGAGAACCAGCTAGTGGTCCTGGCCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 72 bp CATCTCTTCTTCTCCAAAGGGGCCCAGGCCTACAGCTaGGCGAGGGAGACTCTCGCAGGCTGTCATGGGTGG +
Preference number: 6 (lower is better)
Translates to: HLFFSKGAQAYS*ARETLAGCHGW
Trigger: CCACCCATGACAGCCTGCGAGAGTCTCCCTCGCCCAGCTGTAGGCCTGGGCCCCTTTGGAGAAGAAGAGATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 72 bp CTGCCGGGAGACCCGCTTCTTCCTTGGGGGTGGTACTaGGGGTTGTTTGGCCTTCCCAGGAGGCACTGGTAT +
Preference number: 6 (lower is better)
Translates to: LPGDPLLPWGWY*GLFGLPRRHWY
Trigger: ATACCAGTGCCTCCTGGGAAGGCCAAACAACCCCCAGTACCACCCCCAAGGAAGAAGCGGGTCTCCCGGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 90 bp CATGGCTGGCTTTGGCCTCTGTGTCCTGGCTTTGCTCCGTGGTCCTaGGAGGCCTGTCCCCAAGGCTACTTACGGTGCTCTGGGGAGGAA +
Preference number: 6 (lower is better)
Translates to: HGWLWPLCPGFAPWS*EACPQGYLRCSGEE
Trigger: TTCCTCCCCAGAGCACCGTAAGTAGCCTTGGGGACAGGCCTCCAAGGACCACGGAGCAAAGCCAGGACACAGAGGCCAAAGCCAGCCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS GCA 72 bp GGGGACAGCTGCTGGACTGAACTTGGAGGTGCTGCATaGCAGCTTGCCGGACAGGACTCAAGCCTTCCCAAG +
Preference number: 6 (lower is better)
Translates to: GDSCWTELGGAA*QLAGQDSSLPK
Trigger: CTTGGGAAGGCTTGAGTCCTGTCCGGCAAGCTGGCATGCAGCACCTCCAAGTTCAGTCCAGCAGCTGTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 72 bp CCTTCCCAGGAGGCACTGGTATGCTGTCAGCATGGCTaGCTTTGGCCTCTGTGTCCTGGCTTTGCTCCGTGG +
Preference number: 6 (lower is better)
Translates to: PSQEALVCCQHG*LWPLCPGFAPW
Trigger: CCACGGAGCAAAGCCAGGACACAGAGGCCAAAGCCAGCCATGCTGACAGCATACCAGTGCCTCCTGGGAAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 72 bp ACCTCAAACTTCTCAGCGCACTGTGCACACAGTGCCTaGGCTGCTGTGTCTGCCCGTGACGCCAGTGTCCGT +
Preference number: 6 (lower is better)
Translates to: TSNFSAHCAHSA*AAVSARDASVR
Trigger: ACGGACACTGGCGTCACGGGCAGACACAGCAGCCCAGGCACTGTGTGCACAGTGCGCTGAGAAGTTTGAGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 72 bp AGGGCGGGGTCCATGAGCTCCATCATGTACTCCACGTaGAGGAGCATCTCAGTGAGGTTGCTGCGGGCCAGC +
Preference number: 6 (lower is better)
Translates to: RAGSMSSIMYST*RSISVRLLRAS
Trigger: GCTGGCCCGCAGCAACCTCACTGAGATGCTCCTCAACGTGGAGTACATGATGGAGCTCATGGACCCCGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 90 bp TTGGGGACAGCTGCTGGACTGAACTTGGAGGTGCTGCATGCCAGCTaGCCGGACAGGACTCAAGCCTTCCCAAGATGCACCAGTCGCCTG +
Preference number: 6 (lower is better)
Translates to: LGTAAGLNLEVLHAS*PDRTQAFPRCTSRL
Trigger: CAGGCGACTGGTGCATCTTGGGAAGGCTTGAGTCCTGTCCGGCAAGCTGGCATGCAGCACCTCCAAGTTCAGTCCAGCAGCTGTCCCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS GCA 72 bp GCCAGCTTGCCGGACAGGACTCAAGCCTTCCCAAGATaGACCAGTCGCCTGTTTCTCAGAGGATGCCTCCTG +
Preference number: 6 (lower is better)
Translates to: ASLPDRTQAFPR*TSRLFLRGCLL
Trigger: CAGGAGGCATCCTCTGAGAAACAGGCGACTGGTGCATCTTGGGAAGGCTTGAGTCCTGTCCGGCAAGCTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 72 bp TTTGGCCTCTGTGTCCTGGCTTTGCTCCGTGGTCCTTaGAGGCCTGTCCCCAAGGCTACTTACGGTGCTCTG +
Preference number: 6 (lower is better)
Translates to: FGLCVLALLRGP*RPVPKATYGAL
Trigger: CAGAGCACCGTAAGTAGCCTTGGGGACAGGCCTCCAAGGACCACGGAGCAAAGCCAGGACACAGAGGCCAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 72 bp CCCGCTTCTTCCTTGGGGGTGGTACTGGGGGTTGTTTaGCCTTCCCAGGAGGCACTGGTATGCTGTCAGCAT +
Preference number: 6 (lower is better)
Translates to: PASSLGVVLGVV*PSQEALVCCQH
Trigger: ATGCTGACAGCATACCAGTGCCTCCTGGGAAGGCCAAACAACCCCCAGTACCACCCCCAAGGAAGAAGCGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 72 bp TTCTCCTTGAGCTGCTGCAGTGAGCCATCCCGGCTGTaGATCTCCAGCAGGCTGGAGTTGATGGCCTCCTTC +
Preference number: 6 (lower is better)
Translates to: FSLSCCSEPSRL*ISSRLELMASF
Trigger: GAAGGAGGCCATCAACTCCAGCCTGCTGGAGATCCACAGCCGGGATGGCTCACTGCAGCAGCTCAAGGAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 72 bp CTTTGGCCTCTGTGTCCTGGCTTTGCTCCGTGGTCCTaGGAGGCCTGTCCCCAAGGCTACTTACGGTGCTCT +
Preference number: 6 (lower is better)
Translates to: LWPLCPGFAPWS*EACPQGYLRCS
Trigger: AGAGCACCGTAAGTAGCCTTGGGGACAGGCCTCCAAGGACCACGGAGCAAAGCCAGGACACAGAGGCCAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 72 bp ACCCGCTTCTTCCTTGGGGGTGGTACTGGGGGTTGTTaGGCCTTCCCAGGAGGCACTGGTATGCTGTCAGCA +
Preference number: 6 (lower is better)
Translates to: TRFFLGGGTGGC*AFPGGTGMLSA
Trigger: TGCTGACAGCATACCAGTGCCTCCTGGGAAGGCCAAACAACCCCCAGTACCACCCCCAAGGAAGAAGCGGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 72 bp GCTGCTGGACTGAACTTGGAGGTGCTGCATGCCAGCTaGCCGGACAGGACTCAAGCCTTCCCAAGATGCACC +
Preference number: 6 (lower is better)
Translates to: AAGLNLEVLHAS*PDRTQAFPRCT
Trigger: GGTGCATCTTGGGAAGGCTTGAGTCCTGTCCGGCAAGCTGGCATGCAGCACCTCCAAGTTCAGTCCAGCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 72 bp CTCTGGAGAGCTTTGGGGACAGCTGCTGGACTGAACTaGGAGGTGCTGCATGCCAGCTTGCCGGACAGGACT +
Preference number: 6 (lower is better)
Translates to: LWRALGTAAGLN*EVLHASLPDRT
Trigger: AGTCCTGTCCGGCAAGCTGGCATGCAGCACCTCCAAGTTCAGTCCAGCAGCTGTCCCCAAAGCTCTCCAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 72 bp GAGCCATCCCGGCTGTGGATCTCCAGCAGGCTGGAGTaGATGGCCTCCTTCAGGGGCTTCAAGACACACTTG +
Preference number: 6 (lower is better)
Translates to: EPSRLWISSRLE*MASFRGFKTHL
Trigger: CAAGTGTGTCTTGAAGCCCCTGAAGGAGGCCATCAACTCCAGCCTGCTGGAGATCCACAGCCGGGATGGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 72 bp GGAAGTTGGGTTCCCGCACTACTATACAGGGCTGGCTaGAAGCATCCTTGCCGCTGTCCTGGGGCCGGTACA +
Preference number: 6 (lower is better)
Translates to: GSWVPALLYRAG*KHPCRCPGAGT
Trigger: TGTACCGGCCCCAGGACAGCGGCAAGGATGCTTCAAGCCAGCCCTGTATAGTAGTGCGGGAACCCAACTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 90 bp CCTAACTGCAGGGCGGGGTCCATGAGCTCCATCATGTACTCCACGTaGAGGAGCATCTCAGTGAGGTTGCTGCGGGCCAGCACGTACATG +
Preference number: 6 (lower is better)
Translates to: PNCRAGSMSSIMYST*RSISVRLLRASTYM
Trigger: CATGTACGTGCTGGCCCGCAGCAACCTCACTGAGATGCTCCTCAACGTGGAGTACATGATGGAGCTCATGGACCCCGCCCTGCAGTTAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 90 bp ACCCTTGAACTCTGGAGAGCTTTGGGGACAGCTGCTGGACTGAACTaGGAGGTGCTGCATGCCAGCTTGCCGGACAGGACTCAAGCCTTC +
Preference number: 6 (lower is better)
Translates to: TLELWRALGTAAGLN*EVLHASLPDRTQAF
Trigger: GAAGGCTTGAGTCCTGTCCGGCAAGCTGGCATGCAGCACCTCCAAGTTCAGTCCAGCAGCTGTCCCCAAAGCTCTCCAGAGTTCAAGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS TCA 72 bp GAAGCTGAGGCGGTGGCGGGCCTTGTCCAGGATCATTaGGGGTTTCTTCTTCACGTTGGGGCTGCTGAACTC +
Preference number: 6 (lower is better)
Translates to: EAEAVAGLVQDH*GFLLHVGAAEL
Trigger: GAGTTCAGCAGCCCCAACGTGAAGAAGAAACCCTCAATGATCCTGGACAAGGCCCGCCACCGCCTCAGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS TCA 72 bp TGTGCATGCTGGTCAGCTTCTGCAGGATCTTCTCCATaGCAGCCACCTCAGGCACGCTGGTGGTCACACCCA +
Preference number: 6 (lower is better)
Translates to: CACWSASAGSSP*QPPQARWWSHP
Trigger: TGGGTGTGACCACCAGCGTGCCTGAGGTGGCTGTCATGGAGAAGATCCTGCAGAAGCTGACCAGCATGCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS TCA 72 bp GTCCACCAGCACGAAGAGCCGGTAGTCTTGGGGCTGTaGCACCTCAAACTTCTCAGCGCACTGTGCACACAG +
Preference number: 6 (lower is better)
Translates to: VHQHEEPVVLGL*HLKLLSALCTQ
Trigger: CTGTGTGCACAGTGCGCTGAGAAGTTTGAGGTGTCACAGCCCCAAGACTACCGGCTCTTCGTGCTGGTGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS GCA 72 bp GGGTCATCATGGTACGGATCTCCTGCAGCATCTCAGTaGTGGATGTCTGGCGGGCCATCATCTCCAGGCTGT +
Preference number: 6 (lower is better)
Translates to: GSSWYGSPAASQ*WMSGGPSSPGC
Trigger: ACAGCCTGGAGATGATGGCCCGCCAGACATCCAGCACTGAGATGCTGCAGGAGATCCGTACCATGATGACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS GCA 72 bp GCTGACTCCACTATGGCCTCGAGTTCCTCCTCCGAGTaGAGGGTGGGTTCCACCAAGGCTTTGAGTTCAGTG +
Preference number: 6 (lower is better)
Translates to: ADSTMASSSSSE*RVGSTKALSSV
Trigger: CACTGAACTCAAAGCCTTGGTGGAACCCACCCTGCACTCGGAGGAGGAACTCGAGGCCATAGTGGAGTCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 72 bp GGCTTTCCAGAGATACCCTCTCAGAAATGCGCCTCCTaGGAGGGGCTGCTGGAAGAGCCTTCTTCAGGGGTA +
Preference number: 6 (lower is better)
Translates to: GFPEIPSQKCAS*EGLLEEPSSGV
Trigger: TACCCCTGAAGAAGGCTCTTCCAGCAGCCCCTCCCAGGAGGCGCATTTCTGAGAGGGTATCTCTGGAAAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 72 bp TATAGGAAGTTGGGTTCCCGCACTACTATACAGGGCTaGCTTGAAGCATCCTTGCCGCTGTCCTGGGGCCGG +
Preference number: 6 (lower is better)
Translates to: YRKLGSRTTIQG*LEASLPLSWGR
Trigger: CCGGCCCCAGGACAGCGGCAAGGATGCTTCAAGCCAGCCCTGTATAGTAGTGCGGGAACCCAACTTCCTATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 72 bp CTGGCGAAGCTGACGAAGCTGAGGCGGTGGCGGGCCTaGTCCAGGATCATTGAGGGTTTCTTCTTCACGTTG +
Preference number: 6 (lower is better)
Translates to: LAKLTKLRRWRA*SRIIEGFFFTL
Trigger: CAACGTGAAGAAGAAACCCTCAATGATCCTGGACAAGGCCCGCCACCGCCTCAGCTTCGTCAGCTTCGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 90 bp GGAGGCCTGTCCCCAAGGCTACTTACGGTGCTCTGGGGAGGAAGGTaGAGTGATGCTGTCCTAGAAATGCCTGAGTGGTCCCTGTCTGTT +
Preference number: 6 (lower is better)
Translates to: GGLSPRLLTVLWGGR*SDAVLEMPEWSLSV
Trigger: AACAGACAGGGACCACTCAGGCATTTCTAGGACAGCATCACTCAACCTTCCTCCCCAGAGCACCGTAAGTAGCCTTGGGGACAGGCCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 90 bp AGCAGGCTGGAGTTGATGGCCTCCTTCAGGGGCTTCAAGACACACTaGTACAAGGCTGACTCCACTATGGCCTCGAGTTCCTCCTCCGAG +
Preference number: 6 (lower is better)
Translates to: SRLELMASFRGFKTH*YKADSTMASSSSSE
Trigger: CTCGGAGGAGGAACTCGAGGCCATAGTGGAGTCAGCCTTGTACAAGTGTGTCTTGAAGCCCCTGAAGGAGGCCATCAACTCCAGCCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 90 bp ATGAGCTCCATCATGTACTCCACGTTGAGGAGCATCTCAGTGAGGTaGCTGCGGGCCAGCACGTACATGAGCACAGGCAGGAAGTCGTCG +
Preference number: 6 (lower is better)
Translates to: MSSIMYSTLRSISVR*LRASTYMSTGRKSS
Trigger: CGACGACTTCCTGCCTGTGCTCATGTACGTGCTGGCCCGCAGCAACCTCACTGAGATGCTCCTCAACGTGGAGTACATGATGGAGCTCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 90 bp AAGTTGGGTTCCCGCACTACTATACAGGGCTGGCTTGAAGCATCCTaGCCGCTGTCCTGGGGCCGGTACACGAAGTGGAAGTCTCGTTTG +
Preference number: 6 (lower is better)
Translates to: KLGSRTTIQGWLEAS*PLSWGRYTKWKSRL
Trigger: CAAACGAGACTTCCACTTCGTGTACCGGCCCCAGGACAGCGGCAAGGATGCTTCAAGCCAGCCCTGTATAGTAGTGCGGGAACCCAACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS TCA 72 bp TTGAACTCTGGAGAGCTTTGGGGACAGCTGCTGGACTaGACTTGGAGGTGCTGCATGCCAGCTTGCCGGACA +
Preference number: 6 (lower is better)
Translates to: LNSGELWGQLLD*TWRCCMPACRT
Trigger: TGTCCGGCAAGCTGGCATGCAGCACCTCCAAGTTCAGTCCAGCAGCTGTCCCCAAAGCTCTCCAGAGTTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS GCA 72 bp TGTCCTGTGCCAGCTCCACCACCTTCTTATACAGTTTaGGGTCGCTGGAGAGGAAGGCATGGAAGACGCTGG +
Preference number: 6 (lower is better)
Translates to: CPVPAPPPSYTV*GRWRGRHGRRW
Trigger: CCAGCGTCTTCCATGCCTTCCTCTCCAGCGACCGCAAACTGTATAAGAAGGTGGTGGAGCTGGCACAGGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS GCA 72 bp CTGCACCAGGCTGCCGAAGTAGGAGCTCTTGTCCTGTaGCAGCTCCACCACCTTCTTATACAGTTTGCGGTC +
Preference number: 6 (lower is better)
Translates to: LHQAAEVGALVL*QLHHLLIQFAV
Trigger: GACCGCAAACTGTATAAGAAGGTGGTGGAGCTGGCACAGGACAAGAGCTCCTACTTCGGCAGCCTGGTGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 72 bp TTCTTATACAGTTTGCGGTCGCTGGAGAGGAAGGCATaGAAGACGCTGGCGAAGCTGACGAAGCTGAGGCGG +
Preference number: 6 (lower is better)
Translates to: FLYSLRSLERKA*KTLAKLTKLRR
Trigger: CCGCCTCAGCTTCGTCAGCTTCGCCAGCGTCTTCCATGCCTTCCTCTCCAGCGACCGCAAACTGTATAAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 72 bp ATCATGTACTCCACGTTGAGGAGCATCTCAGTGAGGTaGCTGCGGGCCAGCACGTACATGAGCACAGGCAGG +
Preference number: 6 (lower is better)
Translates to: IMYSTLRSISVR*LRASTYMSTGR
Trigger: CCTGCCTGTGCTCATGTACGTGCTGGCCCGCAGCAACCTCACTGAGATGCTCCTCAACGTGGAGTACATGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 72 bp CTTGGAGGCCTGTCCCCAAGGCTACTTACGGTGCTCTaGGGAGGAAGGTTGAGTGATGCTGTCCTAGAAATG +
Preference number: 6 (lower is better)
Translates to: LGGLSPRLLTVL*GGRLSDAVLEM
Trigger: CATTTCTAGGACAGCATCACTCAACCTTCCTCCCCAGAGCACCGTAAGTAGCCTTGGGGACAGGCCTCCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 72 bp TCATCATGGTACGGATCTCCTGCAGCATCTCAGTGCTaGATGTCTGGCGGGCCATCATCTCCAGGCTGTACA +
Preference number: 6 (lower is better)
Translates to: SSWYGSPAASQC*MSGGPSSPGCT
Trigger: TGTACAGCCTGGAGATGATGGCCCGCCAGACATCCAGCACTGAGATGCTGCAGGAGATCCGTACCATGATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 72 bp GCTTCAAGACACACTTGTACAAGGCTGACTCCACTATaGCCTCGAGTTCCTCCTCCGAGTGCAGGGTGGGTT +
Preference number: 6 (lower is better)
Translates to: ASRHTCTRLTPL*PRVPPPSAGWV
Trigger: AACCCACCCTGCACTCGGAGGAGGAACTCGAGGCCATAGTGGAGTCAGCCTTGTACAAGTGTGTCTTGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 72 bp TCCCCAAGGCTACTTACGGTGCTCTGGGGAGGAAGGTaGAGTGATGCTGTCCTAGAAATGCCTGAGTGGTCC +
Preference number: 6 (lower is better)
Translates to: SPRLLTVLWGGR*SDAVLEMPEWS
Trigger: GGACCACTCAGGCATTTCTAGGACAGCATCACTCAACCTTCCTCCCCAGAGCACCGTAAGTAGCCTTGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 72 bp TTGTCCTGTGCCAGCTCCACCACCTTCTTATACAGTTaGCGGTCGCTGGAGAGGAAGGCATGGAAGACGCTG +
Preference number: 6 (lower is better)
Translates to: LSCASSTTFLYS*RSLERKAWKTL
Trigger: CAGCGTCTTCCATGCCTTCCTCTCCAGCGACCGCAAACTGTATAAGAAGGTGGTGGAGCTGGCACAGGACAA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS TCA 72 bp CTTTTCTTCTTTGATGGGGTACTCCAGCACCTCAGCTaGGCTGCCCTTCAGGGAAGGGAAGTGGACACACAG +
Preference number: 6 (lower is better)
Translates to: LFFFDGVLQHLS*AALQGREVDTQ
Trigger: CTGTGTGTCCACTTCCCTTCCCTGAAGGGCAGCTCAGCTGAGGTGCTGGAGTACCCCATCAAAGAAGAAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000056950.14
ENSMUST00000101114.11
ENSMUST00000133820.2
ENSMUST00000150795.8
CDS GCA 72 bp ATTTCCCACGGAGAGCTCGATTTCACAGGAACAATTTaGGTAATGGGTTGTAGGCCGGAGGCTGGAGGATGC +
Preference number: 6 (lower is better)
Translates to: ISHGELDFTGTI*VMGCRPEAGGC
Trigger: GCATCCTCCAGCCTCCGGCCTACAACCCATTACGCAAATTGTTCCTGTGAAATCGAGCTCTCCGTGGGAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 72 bp TTCAGCAAGTGTTCCCAGGCTGTTTCCAGGCCCAGGTaGGAGATGGTCTCAAGTTCAAGGAAGCTGCTAGCT +
Preference number: 6 (lower is better)
Translates to: FSKCSQAVSRPR*EMVSSSRKLLA
Trigger: AGCTAGCAGCTTCCTTGAACTTGAGACCATCTCCAACCTGGGCCTGGAAACAGCCTGGGAACACTTGCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101114.11
CDS TCA 72 bp GCAGGTCTTCAGCAAGATGGAGATTTTCTTCCCTGGTaGGTAGGCTTTGTGCATGCTGGTCAGCTTCTGCAG +
Preference number: 6 (lower is better)
Translates to: AGLQQDGDFLPW*VGFVHAGQLLQ
Trigger: CTGCAGAAGCTGACCAGCATGCACAAAGCCTACTCACCAGGGAAGAAAATCTCCATCTTGCTGAAGACCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CCA 72 bp GGAAGGTTGAGTGATGCTGTCCTAGAAATGCCTGAGTaGTCCCTGTCTGTTGAAGTCCCCACATTCTGGCTT +
Preference number: 6 (lower is better)
Translates to: GRLSDAVLEMPE*SLSVEVPTFWL
Trigger: AAGCCAGAATGTGGGGACTTCAACAGACAGGGACCACTCAGGCATTTCTAGGACAGCATCACTCAACCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2
CDS CAA 90 bp AACACAAGAACTGAGCCTTCCAGGTACAGTATAGCCTTTTCTTCTTaGATGGGGTACTCCAGCACCTCAGCTGAGCTGCCCTTCAGGGAA +
Preference number: 6 (lower is better)
Translates to: NTRTEPSRYSIAFSS*MGYSSTSAELPFRE
Trigger: TTCCCTGAAGGGCAGCTCAGCTGAGGTGCTGGAGTACCCCATCAAAGAAGAAAAGGCTATACTGTACCTGGAAGGCTCAGTTCTTGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056950.14
ENSMUST00000101114.11
ENSMUST00000133820.2
CDS TCA 72 bp GCTTCCCTGGGTTGCCAAGAGCCATGGAGTCATAGATaGGCTTGCAGGTCTTCAGCAAGATGGAGATTTTCT +
Preference number: 6 (lower is better)
Translates to: ASLGCQEPWSHR*ACRSSARWRFS
Trigger: AGAAAATCTCCATCTTGCTGAAGACCTGCAAGCTCATCTATGACTCCATGGCTCTTGGCAACCCAGGGAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056950.14
ENSMUST00000133820.2