RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RIN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024883

Ensembl transcript IDs: ENSMUST00000025818.8, ENSMUST00000224032.2, ENSMUST00000224288.2, ENSMUST00000225427.2, ENSMUST00000225799.3, ENSMUST00000237762.2

Found 338 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGGGGCCACTAGCTTCTGGCAGCCGCACACACAGAGCCTGGCACTaGCGAGTGTTAGATTTCCGCACCAGGAAGGTCCCCGGAGGCTCT +
Preference number: 1 (lower is better)
Translates to: EGPLASGSRTHRAWH*RVLDFRTRKVPGGS
Trigger: AGAGCCTCCGGGGACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237762.2
3UTR CCA 90 bp GTGGCAGACACCACAGAGAACTGTGGGTGGGTGGTAAAGGAAGCTTaGCAGCTGGGAAGAGTGGACTTAGAGGCTCCCGGGGGCCCAGGT +
Preference number: 1 (lower is better)
Translates to: VADTTENCGWVVKEA*QLGRVDLEAPGGPG
Trigger: ACCTGGGCCCCCGGGAGCCTCTAAGTCCACTCTTCCCAGCTGCCAAGCTTCCTTTACCACCCACCCACAGTTCTCTGTGGTGTCTGCCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CCA 90 bp CGAGCCTTCAGCCGGGGTATGGGTGGGGCTTCCGAAGGCCTCTGTTaGTCCTTGGTGTTGAGTGAGGAGCTCCAGAACTCCATGCCCAGA +
Preference number: 1 (lower is better)
Translates to: RAFSRGMGGASEGLC*SLVLSEELQNSMPR
Trigger: TCTGGGCATGGAGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224288.2
3UTR TCA 90 bp GGGGTATGGGTGGGGCTTCCGAAGGCCTCTGTTGGTCCTTGGTGTTaGGTGAGGAGCTCCAGAACTCCATGCCCAGATGGGAGATGGCCT +
Preference number: 1 (lower is better)
Translates to: GVWVGLPKASVGPWC*VRSSRTPCPDGRWP
Trigger: AGGCCATCTCCCATCTGGGCATGGAGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224288.2
3UTR CCA 90 bp GGAGTTGCACAGGGTCTTGATGCTCCAGCATCTCTCCATGGGCAGTaGGAGAGGCAAAAGAAGCCAGGACTACCCTCCCACCACGCCCCT +
Preference number: 1 (lower is better)
Translates to: GVAQGLDAPASLHGQ*ERQKKPGLPSHHAP
Trigger: AGGGGCGTGGTGGGAGGGTAGTCCTGGCTTCTTTTGCCTCTCCCACTGCCCATGGAGAGATGCTGGAGCATCAAGACCCTGTGCAACTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR GCA 90 bp CTCCATGCCCAGATGGGAGATGGCCTCCAGCTCTTTGTGGGTGGCTaGCTGATGAATGGCTCTGGGGAGTCGGAGAGGGAGGAGAAGAAT +
Preference number: 1 (lower is better)
Translates to: LHAQMGDGLQLFVGG*LMNGSGESEREEKN
Trigger: ATTCTTCTCCTCCCTCTCCGACTCCCCAGAGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224288.2
3UTR CCA 90 bp AGATGGCCTCCAGCTCTTTGTGGGTGGCTGCCTGATGAATGGCTCTaGGGAGTCGGAGAGGGAGGAGAAGAATGTCCCTGGTACGGCAGT +
Preference number: 1 (lower is better)
Translates to: RWPPALCGWLPDEWL*GVGEGGEECPWYGS
Trigger: ACTGCCGTACCAGGGACATTCTTCTCCTCCCTCTCCGACTCCCCAGAGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224288.2
ENSMUST00000237762.2
3UTR TCA 90 bp TTCTCTGCTCAGATTTGCAGTGGGCTTCCCTCTGGGGCTGCTGCCTaGGCCTGGAGGGCTAGTCTGCTGGAACGTCTTGGGAATTACCTA +
Preference number: 1 (lower is better)
Translates to: FSAQICSGLPSGAAA*AWRASLLERLGNYL
Trigger: TAGGTAATTCCCAAGACGTTCCAGCAGACTAGCCCTCCAGGCTCAGGCAGCAGCCCCAGAGGGAAGCCCACTGCAAATCTGAGCAGAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR GCA 90 bp GGGAGGAGAAGAATGTCCCTGGTACGGCAGTATCCACAGATGAGCTaGACCAGGTCCTGGAACATGAGCTCTGAGCCCTCCAAAGAGACA +
Preference number: 1 (lower is better)
Translates to: GRRRMSLVRQYPQMS*TRSWNMSSEPSKET
Trigger: TGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAGGGACATTCTTCTCCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224288.2
ENSMUST00000237762.2
3UTR CCA 90 bp AGTCTACCTCCTGTTGGTATGTGCATCACATCTAAGTTGGTGCCCTaGTACTCAGAGGCCCAGGAGAGCAGCTCTGAGCCTGGCTGTGGT +
Preference number: 1 (lower is better)
Translates to: SLPPVGMCITSKLVP*YSEAQESSSEPGCG
Trigger: ACCACAGCCAGGCTCAGAGCTGCTCTCCTGGGCCTCTGAGTACCAGGGCACCAACTTAGATGTGATGCACATACCAACAGGAGGTAGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR TCA 90 bp TCCCTGACCCCTAGAACTAGGAGAGACTGGAGTTGCACAGGGTCTTaGTGCTCCAGCATCTCTCCATGGGCAGTGGGAGAGGCAAAAGAA +
Preference number: 1 (lower is better)
Translates to: SLTPRTRRDWSCTGS*CSSISPWAVGEAKE
Trigger: TTCTTTTGCCTCTCCCACTGCCCATGGAGAGATGCTGGAGCATCAAGACCCTGTGCAACTCCAGTCTCTCCTAGTTCTAGGGGTCAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CCA 90 bp CTCTTCGATATAGTGGCTGGAGACAAAAGAGGGGCCACTAGCTTCTaGCAGCCGCACACACAGAGCCTGGCACTGGCGAGTGTTAGATTT +
Preference number: 1 (lower is better)
Translates to: LFDIVAGDKRGATSF*QPHTQSLALASVRF
Trigger: AAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237762.2
3UTR TCA 90 bp GCAGTATCCACAGATGAGCTGCACCAGGTCCTGGAACATGAGCTCTaGGCCCTCCAAAGAGACACCGCCAGTACTCTCTTCGATATAGTG +
Preference number: 1 (lower is better)
Translates to: AVSTDELHQVLEHEL*ALQRDTASTLFDIV
Trigger: CACTATATCGAAGAGAGTACTGGCGGTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237762.2
3UTR GCA 90 bp TTGAAAGTCTACCTCCTGTTGGTATGTGCATCACATCTAAGTTGGTaGCCTGGTACTCAGAGGCCCAGGAGAGCAGCTCTGAGCCTGGCT +
Preference number: 1 (lower is better)
Translates to: LKVYLLLVCASHLSW*PGTQRPRRAALSLA
Trigger: AGCCAGGCTCAGAGCTGCTCTCCTGGGCCTCTGAGTACCAGGGCACCAACTTAGATGTGATGCACATACCAACAGGAGGTAGACTTTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CCA 90 bp AGCTTTAGTAAGGACCCAAGGAGTGGGGTACGACGGCAATGTTTGTaGAGCACCTCTCTGTTCTGGAAACTTCTCTTCCTGCTAGCGTGC +
Preference number: 1 (lower is better)
Translates to: SFSKDPRSGVRRQCL*STSLFWKLLFLLAC
Trigger: GCACGCTAGCAGGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTACCCCACTCCTTGGGTCCTTACTAAAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CCA 90 bp GATTTGAAAGTCTACCTCCTGTTGGTATGTGCATCACATCTAAGTTaGTGCCCTGGTACTCAGAGGCCCAGGAGAGCAGCTCTGAGCCTG +
Preference number: 1 (lower is better)
Translates to: DLKVYLLLVCASHLS*CPGTQRPRRAALSL
Trigger: CAGGCTCAGAGCTGCTCTCCTGGGCCTCTGAGTACCAGGGCACCAACTTAGATGTGATGCACATACCAACAGGAGGTAGACTTTCAAATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR TCA 90 bp ATCTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTCTTACCACTG +
Preference number: 1 (lower is better)
Translates to: ISLQMVVSHHVVAGI*TLDLRKSSWVLLPL
Trigger: CAGTGGTAAGAGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CCA 90 bp GAGTCAGATCTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTCTT +
Preference number: 1 (lower is better)
Translates to: ESDLVTDGCEPPCGC*DLNSGPSEEQLGAL
Trigger: AAGAGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAGATCTGACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CCA 90 bp AGGAGTGGGGTACGACGGCAATGTTTGTGGAGCACCTCTCTGTTCTaGAAACTTCTCTTCCTGCTAGCGTGCATTATTTCTCAGGGTCCA +
Preference number: 1 (lower is better)
Translates to: RSGVRRQCLWSTSLF*KLLFLLACIISQGP
Trigger: TGGACCCTGAGAAATAATGCACGCTAGCAGGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTACCCCACTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR TCA 90 bp TTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTCTTACCACTaGGCCATCTCACCAGCCCCTCAACAGATTTCTGATCGTGAGAAA +
Preference number: 1 (lower is better)
Translates to: FELWTFGRAVGCSYH*AISPAPQQISDREK
Trigger: TTTCTCACGATCAGAAATCTGTTGAGGGGCTGGTGAGATGGCTCAGTGGTAAGAGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR GCA 90 bp GCCCCTCAACAGATTTCTGATCGTGAGAAAAGACTGGAACATAGATaGTTTCTCTCCTACGGCCTGACCTCCAGGGTGACAACCATCTCT +
Preference number: 1 (lower is better)
Translates to: APQQISDREKRLEHR*FLSYGLTSRVTTIS
Trigger: AGAGATGGTTGTCACCCTGGAGGTCAGGCCGTAGGAGAGAAAGCATCTATGTTCCAGTCTTTTCTCACGATCAGAAATCTGTTGAGGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR GCA 90 bp AACAATCCTCTTCTAAGAATCTCTGACTATAAGGGGTCTCTGCTCTaGATGTCCCAAGCTGCTATAAGAGTGTGTGAGGCCAGTGACTGT +
Preference number: 1 (lower is better)
Translates to: NNPLLRISDYKGSLL*MSQAAIRVCEASDC
Trigger: ACAGTCACTGGCCTCACACACTCTTATAGCAGCTTGGGACATGCAGAGCAGAGACCCCTTATAGTCAGAGATTCTTAGAAGAGGATTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR GCA 90 bp TTGTGGAGCACCTCTCTGTTCTGGAAACTTCTCTTCCTGCTAGCGTaGATTATTTCTCAGGGTCCAATTTCCCAGAAATACTTCAGTGTC +
Preference number: 1 (lower is better)
Translates to: LWSTSLFWKLLFLLA*IISQGPISQKYFSV
Trigger: GACACTGAAGTATTTCTGGGAAATTGGACCCTGAGAAATAATGCACGCTAGCAGGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CAA 90 bp GGTGGCAGACACCACAGAGAACTGTGGGTGGGTGGTAAAGGAAGCTaGGCAGCTGGGAAGAGTGGACTTAGAGGCTCCCGGGGGCCCAGG +
Preference number: 2 (lower is better)
Translates to: GGRHHRELWVGGKGS*AAGKSGLRGSRGPR
Trigger: CCTGGGCCCCCGGGAGCCTCTAAGTCCACTCTTCCCAGCTGCCAAGCTTCCTTTACCACCCACCCACAGTTCTCTGTGGTGTCTGCCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CAA 90 bp CGGGGTATGGGTGGGGCTTCCGAAGGCCTCTGTTGGTCCTTGGTGTaGAGTGAGGAGCTCCAGAACTCCATGCCCAGATGGGAGATGGCC +
Preference number: 2 (lower is better)
Translates to: RGMGGASEGLCWSLV*SEELQNSMPRWEMA
Trigger: GGCCATCTCCCATCTGGGCATGGAGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224288.2
3UTR CAA 90 bp TTCAGCCGGGGTATGGGTGGGGCTTCCGAAGGCCTCTGTTGGTCCTaGGTGTTGAGTGAGGAGCTCCAGAACTCCATGCCCAGATGGGAG +
Preference number: 2 (lower is better)
Translates to: FSRGMGGASEGLCWS*VLSEELQNSMPRWE
Trigger: CTCCCATCTGGGCATGGAGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224288.2
3UTR-3UTR CCA 90 bp GGAGTTGCACAGGGTCTTGATGCTCCAGCATCTCTCCATGGGCAGTGGGAGAGGATCGGCCAGAGGTGGTaGCAGACACCACAGAGAACT +
Preference number: 2 (lower is better)
Translates to: GVAQGLDAPASLHGQWERIGQRW*QTPQRT
Trigger: AGTTCTCTGTGGTGTCTGCCACCACCTCTGGCCGAT...CCTCTCCCACTGCCCATGGAGAGATGCTGGAGCATCAAGACCCTGTGCAACTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR CCA 90 bp GAAGGCCTCTGTTGGTCCTTGGTGTTGAGTGAGGAGCTCCAGAACTCCATGCCCTGGCTGCCTGATGAATaGCTCTGGGGAGTCGGAGAG +
Preference number: 2 (lower is better)
Translates to: EGLCWSLVLSEELQNSMPWLPDE*LWGVGE
Trigger: CTCTCCGACTCCCCAGAGCCATTCATCAGGCAGCCA...GGGCATGGAGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224288.2
3UTR-3UTR TCA 90 bp CTGGTACGGCAGTATCCACAGATGAGCTGCACCAGGTCCTGGAACATGAGCTCTGGCAGTATCCACAGATaGGCTGCACCAGGTCCTGGA +
Preference number: 2 (lower is better)
Translates to: LVRQYPQMSCTRSWNMSSGSIHR*AAPGPG
Trigger: TCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCC...AGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224288.2
ENSMUST00000237762.2
3UTR-3UTR CCA 90 bp GACCTTCGGAAGAGCAGTTGGGTGCTCTTACCACTGAGCCATCTCACCAGCCCCCATCCATGTAGGTCCTaGGTCACTCTAGGAACCCTG +
Preference number: 2 (lower is better)
Translates to: DLRKSSWVLLPLSHLTSPHPCRS*VTLGTL
Trigger: CAGGGTTCCTAGAGTGACCCAGGACCTACATGGATG...GGGGCTGGTGAGATGGCTCAGTGGTAAGAGCACCCAACTGCTCTTCCGAAGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR TCA 90 bp AAGAATGTCCCTGGTACGGCAGTATCCACAGATGAGCTGCACCAGGTCCTGGAAGGCAGTATCCACAGATaGGCTGCACCAGGTCCTGGA +
Preference number: 2 (lower is better)
Translates to: KNVPGTAVSTDELHQVLEGSIHR*AAPGPG
Trigger: TCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCC...TTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAGGGACATTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224288.2
ENSMUST00000237762.2
3UTR-3UTR CCA 90 bp GGAGTTGCACAGGGTCTTGATGCTCCAGCATCTCTCCATGGGCAGTGGGAGAGGACAGAGAACTGTGGGTaGGTGGTAAAGGAAGCTTGG +
Preference number: 2 (lower is better)
Translates to: GVAQGLDAPASLHGQWERTENCG*VVKEAW
Trigger: CCAAGCTTCCTTTACCACCCACCCACAGTTCTCTGT...CCTCTCCCACTGCCCATGGAGAGATGCTGGAGCATCAAGACCCTGTGCAACTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR CCA 90 bp AGAATGTCCCTGGTACGGCAGTATCCACAGATGAGCTGCACCAGGTCCTGGAACCCAGCTCTTTGTGGGTaGCTGCCTGATGAATGGCTC +
Preference number: 2 (lower is better)
Translates to: RMSLVRQYPQMSCTRSWNPALCG*LPDEWL
Trigger: GAGCCATTCATCAGGCAGCCACCCACAAAGAGCTGG...GTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAGGGACATTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224288.2
ENSMUST00000237762.2
3UTR-3UTR CCA 90 bp AGGCCCAGGAGAGCAGCTCTGAGCCTGGCTGTGGTCCTCCTTTGTCCGGAAACACCCTCTTGTGGCTTTTaGTGGGTATTTTTCTCTGCT +
Preference number: 2 (lower is better)
Translates to: RPRRAALSLAVVLLCPETPSCGF*WVFFSA
Trigger: AGCAGAGAAAAATACCCACCAAAAGCCACAAGAGGG...TGTTTCCGGACAAAGGAGGACCACAGCCAGGCTCAGAGCTGCTCTCCTGGGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR CCA 90 bp AAGAATGTCCCTGGTACGGCAGTATCCACAGATGAGCTGCACCAGGTCCTGGAACCAGCTCTTTGTGGGTaGCTGCCTGATGAATGGCTC +
Preference number: 2 (lower is better)
Translates to: KNVPGTAVSTDELHQVLEPALCG*LPDEWL
Trigger: GAGCCATTCATCAGGCAGCCACCCACAAAGAGCTGG...TTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAGGGACATTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224288.2
ENSMUST00000237762.2
3UTR CAA 90 bp TCAGAGGCCCAGGAGAGCAGCTCTGAGCCTGGCTGTGGTCCTCCTTaGTCCGGAAACAATCCTCTTCTAAGAATCTCTGACTATAAGGGG +
Preference number: 2 (lower is better)
Translates to: SEAQESSSEPGCGPP*SGNNPLLRISDYKG
Trigger: CCCCTTATAGTCAGAGATTCTTAGAAGAGGATTGTTTCCGGACAAAGGAGGACCACAGCCAGGCTCAGAGCTGCTCTCCTGGGCCTCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR TCA 90 bp TCTTGGGAATTACCTAACCTGTACTGCCGTGGGGCCCACAGCTACACCATTCCTAGTTGCACAGGGTCTTaGTGCTCCAGCATCTCTCCA +
Preference number: 2 (lower is better)
Translates to: SWELPNLYCRGAHSYTIPSCTGS*CSSISP
Trigger: TGGAGAGATGCTGGAGCATCAAGACCCTGTGCAACT...AGGAATGGTGTAGCTGTGGGCCCCACGGCAGTACAGGTTAGGTAATTCCCAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR GCA 90 bp TCTTGGGAATTACCTAACCTGTACTGCCGTGGGGCCCACAGCTACACCATTCCTTTTGGGGAGCTTTGCTaGCATTCTGGTTCCCTGACC +
Preference number: 2 (lower is better)
Translates to: SWELPNLYCRGAHSYTIPFGELC*HSGSLT
Trigger: GGTCAGGGAACCAGAATGGCAGCAAAGCTCCCCAAA...AGGAATGGTGTAGCTGTGGGCCCCACGGCAGTACAGGTTAGGTAATTCCCAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR GCA 90 bp AGGAGAAGAATGTCCCTGGTACGGCAGTATCCACAGATGAGCTGCACCAGGTCCTATCCACAGATGAGCTaGACCAGGTCCTGGAACATG +
Preference number: 2 (lower is better)
Translates to: RRRMSLVRQYPQMSCTRSYPQMS*TRSWNM
Trigger: CATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATA...GGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAGGGACATTCTTCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224288.2
ENSMUST00000237762.2
3UTR-3UTR CCA 90 bp ACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCGTGGTAAAGGAAGCTTaGCAGCTGGGAAGAGTGGAC +
Preference number: 2 (lower is better)
Translates to: TMWLLGFELWTFGRAVGCVVKEA*QLGRVD
Trigger: GTCCACTCTTCCCAGCTGCCAAGCTTCCTTTACCAC...GCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR CCA 90 bp AGAGGCTGCCTACGGGACAGGCTTGCCATAGCTGCTAACACTCATTCTTTCTTCATCGGCCAGAGGTGGTaGCAGACACCACAGAGAACT +
Preference number: 2 (lower is better)
Translates to: RGCLRDRLAIAANTHSFFIGQRW*QTPQRT
Trigger: AGTTCTCTGTGGTGTCTGCCACCACCTCTGGCCGAT...GAAGAAAGAATGAGTGTTAGCAGCTATGGCAAGCCTGTCCCGTAGGCAGCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR CCA 90 bp TCTTGGGAATTACCTAACCTGTACTGCCGTGGGGCCCACAGCTACACCATTCCTTCCAGCATCTCTCCATaGGCAGTGGGAGAGGCAAAA +
Preference number: 2 (lower is better)
Translates to: SWELPNLYCRGAHSYTIPSSISP*AVGEAK
Trigger: TTTTGCCTCTCCCACTGCCCATGGAGAGATGCTGGA...AGGAATGGTGTAGCTGTGGGCCCCACGGCAGTACAGGTTAGGTAATTCCCAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR CCA 90 bp TCTTGGGAATTACCTAACCTGTACTGCCGTGGGGCCCACAGCTACACCATTCCTCATCCATGTAGGTCCTaGGTCACTCTAGGAACCCTG +
Preference number: 2 (lower is better)
Translates to: SWELPNLYCRGAHSYTIPHPCRS*VTLGTL
Trigger: CAGGGTTCCTAGAGTGACCCAGGACCTACATGGATG...AGGAATGGTGTAGCTGTGGGCCCCACGGCAGTACAGGTTAGGTAATTCCCAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR CCA 90 bp AGAATGTCCCTGGTACGGCAGTATCCACAGATGAGCTGCACCAGGTCCTGGAACCTTCGATATAGTGGCTaGAGACAAAAGAGGGGCCAC +
Preference number: 2 (lower is better)
Translates to: RMSLVRQYPQMSCTRSWNLRYSG*RQKRGH
Trigger: GTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAG...GTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAGGGACATTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237762.2
3UTR CAA 90 bp GGATTTGAAAGTCTACCTCCTGTTGGTATGTGCATCACATCTAAGTaGGTGCCCTGGTACTCAGAGGCCCAGGAGAGCAGCTCTGAGCCT +
Preference number: 2 (lower is better)
Translates to: GFESLPPVGMCITSK*VPWYSEAQESSSEP
Trigger: AGGCTCAGAGCTGCTCTCCTGGGCCTCTGAGTACCAGGGCACCAACTTAGATGTGATGCACATACCAACAGGAGGTAGACTTTCAAATCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR GCA 90 bp CTGCCGTGGGGCCCACAGCTACACCATTCCTCATTATCAAGCTTTAGTAAGGACTTTGGGGAGCTTTGCTaGCATTCTGGTTCCCTGACC +
Preference number: 2 (lower is better)
Translates to: LPWGPQLHHSSLSSFSKDFGELC*HSGSLT
Trigger: GGTCAGGGAACCAGAATGGCAGCAAAGCTCCCCAAA...GTCCTTACTAAAGCTTGATAATGAGGAATGGTGTAGCTGTGGGCCCCACGGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR CCA 90 bp AGAGGCTGCCTACGGGACAGGCTTGCCATAGCTGCTAACACTCATTCTTTCTTCTCCAGCATCTCTCCATaGGCAGTGGGAGAGGCAAAA +
Preference number: 2 (lower is better)
Translates to: RGCLRDRLAIAANTHSFFSSISP*AVGEAK
Trigger: TTTTGCCTCTCCCACTGCCCATGGAGAGATGCTGGA...GAAGAAAGAATGAGTGTTAGCAGCTATGGCAAGCCTGTCCCGTAGGCAGCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CAA 90 bp GATCTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTCTTACCACT +
Preference number: 2 (lower is better)
Translates to: DLVTDGCEPPCGCWD*NSGPSEEQLGALTT
Trigger: AGTGGTAAGAGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CAA 90 bp TCAAGCTTTAGTAAGGACCCAAGGAGTGGGGTACGACGGCAATGTTaGTGGAGCACCTCTCTGTTCTGGAAACTTCTCTTCCTGCTAGCG +
Preference number: 2 (lower is better)
Translates to: SSFSKDPRSGVRRQC*WSTSLFWKLLFLLA
Trigger: CGCTAGCAGGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTACCCCACTCCTTGGGTCCTTACTAAAGCTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR TCA 90 bp GTACGACGGCAATGTTTGTGGAGCACCTCTCTGTTCTGGAAACTTCTCTTCCTGAGTTGCACAGGGTCTTaGTGCTCCAGCATCTCTCCA +
Preference number: 2 (lower is better)
Translates to: VRRQCLWSTSLFWKLLFLSCTGS*CSSISP
Trigger: TGGAGAGATGCTGGAGCATCAAGACCCTGTGCAACT...CAGGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR CCA 90 bp GGGTACGACGGCAATGTTTGTGGAGCACCTCTCTGTTCTGGAAACTTCTCTTCCACAGAGAACTGTGGGTaGGTGGTAAAGGAAGCTTGG +
Preference number: 2 (lower is better)
Translates to: GYDGNVCGAPLCSGNFSSTENCG*VVKEAW
Trigger: CCAAGCTTCCTTTACCACCCACCCACAGTTCTCTGT...GGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR CCA 90 bp TCTTGGGAATTACCTAACCTGTACTGCCGTGGGGCCCACAGCTACACCATTCCTCTGGGATTTGAACTCTaGACCTTCGGAAGAGCAGTT +
Preference number: 2 (lower is better)
Translates to: SWELPNLYCRGAHSYTIPLGFEL*TFGRAV
Trigger: AACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAG...AGGAATGGTGTAGCTGTGGGCCCCACGGCAGTACAGGTTAGGTAATTCCCAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR GCA 90 bp TCTTGGGAATTACCTAACCTGTACTGCCGTGGGGCCCACAGCTACACCATTCCTGTCATATCCCTTCTTTaGACACCAGATGCTATGTCT +
Preference number: 2 (lower is better)
Translates to: SWELPNLYCRGAHSYTIPVISLL*TPDAMS
Trigger: AGACATAGCATCTGGTGTGCAAAGAAGGGATATGAC...AGGAATGGTGTAGCTGTGGGCCCCACGGCAGTACAGGTTAGGTAATTCCCAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR GCA 90 bp CTGCCGTGGGGCCCACAGCTACACCATTCCTCATTATCAAGCTTTAGTAAGGACGTCATATCCCTTCTTTaGACACCAGATGCTATGTCT +
Preference number: 2 (lower is better)
Translates to: LPWGPQLHHSSLSSFSKDVISLL*TPDAMS
Trigger: AGACATAGCATCTGGTGTGCAAAGAAGGGATATGAC...GTCCTTACTAAAGCTTGATAATGAGGAATGGTGTAGCTGTGGGCCCCACGGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR CCA 90 bp ATTTCTGATCGTGAGAAAAGACTGGAACATAGATGCTTTCTCTCCTACGGCCTGCTGTTCCCTAGCAGGTaGACTTATGAAGATCGGCCA +
Preference number: 2 (lower is better)
Translates to: ISDREKRLEHRCFLSYGLLFPSR*TYEDRP
Trigger: TGGCCGATCTTCATAAGTCCACCTGCTAGGGAACAG...CAGGCCGTAGGAGAGAAAGCATCTATGTTCCAGTCTTTTCTCACGATCAGAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR CCA 90 bp GGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTCTTACCATCGTGAGAAAAGACTaGAACATAGATGCTTTCTCT +
Preference number: 2 (lower is better)
Translates to: GCWDLNSGPSEEQLGALTIVRKD*NIDAFS
Trigger: AGAGAAAGCATCTATGTTCCAGTCTTTTCTCACGAT...GGTAAGAGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR CCA 90 bp CTTCTAAGAATCTCTGACTATAAGGGGTCTCTGCTCTGCATGTCCCAAGCTGCTGTATGCGCCCTCTTGTaGCTTTTGGTGGGTATTTTT +
Preference number: 2 (lower is better)
Translates to: LLRISDYKGSLLCMSQAAVCALL*LLVGIF
Trigger: AAAAATACCCACCAAAAGCCACAAGAGGGCGCATAC...AGCAGCTTGGGACATGCAGAGCAGAGACCCCTTATAGTCAGAGATTCTTAGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CCA 72 bp CTCTTGAGGGGAGCGAGCCTTCAGCCGGGGTATGGGTaGGGCTTCCGAAGGCCTCTGTTGGTCCTTGGTGTT +
Preference number: 3 (lower is better)
Translates to: LLRGASLQPGYG*GFRRPLLVLGV
Trigger: AACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224288.2
3UTR GCA 72 bp CAGATGGGAGATGGCCTCCAGCTCTTTGTGGGTGGCTaGCTGATGAATGGCTCTGGGGAGTCGGAGAGGGAG +
Preference number: 3 (lower is better)
Translates to: QMGDGLQLFVGG*LMNGSGESERE
Trigger: CTCCCTCTCCGACTCCCCAGAGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224288.2
ENSMUST00000237762.2
3UTR CCA 72 bp AGCCGGGGTATGGGTGGGGCTTCCGAAGGCCTCTGTTaGTCCTTGGTGTTGAGTGAGGAGCTCCAGAACTCC +
Preference number: 3 (lower is better)
Translates to: SRGMGGASEGLC*SLVLSEELQNS
Trigger: GGAGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224288.2
3UTR CCA 72 bp CTAGCTTCTGGCAGCCGCACACACAGAGCCTGGCACTaGCGAGTGTTAGATTTCCGCACCAGGAAGGTCCCC +
Preference number: 3 (lower is better)
Translates to: LASGSRTHRAWH*RVLDFRTRKVP
Trigger: GGGGACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237762.2
3UTR CCA 72 bp GGGCCACTAGCTTCTGGCAGCCGCACACACAGAGCCTaGCACTGGCGAGTGTTAGATTTCCGCACCAGGAAG +
Preference number: 3 (lower is better)
Translates to: GPLASGSRTHRA*HWRVLDFRTRK
Trigger: CTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237762.2
3UTR TCA 72 bp GTGGGGCTTCCGAAGGCCTCTGTTGGTCCTTGGTGTTaGGTGAGGAGCTCCAGAACTCCATGCCCAGATGGG +
Preference number: 3 (lower is better)
Translates to: VGLPKASVGPWC*VRSSRTPCPDG
Trigger: CCCATCTGGGCATGGAGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224288.2
3UTR CCA 72 bp TCGGCCAGAGGTGGTGGCAGACACCACAGAGAACTGTaGGTGGGTGGTAAAGGAAGCTTGGCAGCTGGGAAG +
Preference number: 3 (lower is better)
Translates to: SARGGGRHHREL*VGGKGSLAAGK
Trigger: CTTCCCAGCTGCCAAGCTTCCTTTACCACCCACCCACAGTTCTCTGTGGTGTCTGCCACCACCTCTGGCCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CCA 72 bp ATAGTGGCTGGAGACAAAAGAGGGGCCACTAGCTTCTaGCAGCCGCACACACAGAGCCTGGCACTGGCGAGT +
Preference number: 3 (lower is better)
Translates to: IVAGDKRGATSF*QPHTQSLALAS
Trigger: ACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237762.2
3UTR-3UTR CAA 90 bp AGGCCCAGGAGAGCAGCTCTGAGCCTGGCTGTGGTCCTCCTTTGTCCGGAAACATTTCTCTGCTCAGATTaGCAGTGGGCTTCCCTCTGG +
Preference number: 3 (lower is better)
Translates to: RPRRAALSLAVVLLCPETFLCSD*QWASLW
Trigger: CCAGAGGGAAGCCCACTGCAAATCTGAGCAGAGAAA...TGTTTCCGGACAAAGGAGGACCACAGCCAGGCTCAGAGCTGCTCTCCTGGGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CCA 72 bp ACCACAGAGAACTGTGGGTGGGTGGTAAAGGAAGCTTaGCAGCTGGGAAGAGTGGACTTAGAGGCTCCCGGG +
Preference number: 3 (lower is better)
Translates to: TTENCGWVVKEA*QLGRVDLEAPG
Trigger: CCCGGGAGCCTCTAAGTCCACTCTTCCCAGCTGCCAAGCTTCCTTTACCACCCACCCACAGTTCTCTGTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CCA 72 bp CCAGAGGTGGTGGCAGACACCACAGAGAACTGTGGGTaGGTGGTAAAGGAAGCTTGGCAGCTGGGAAGAGTG +
Preference number: 3 (lower is better)
Translates to: PEVVADTTENCG*VVKEAWQLGRV
Trigger: CACTCTTCCCAGCTGCCAAGCTTCCTTTACCACCCACCCACAGTTCTCTGTGGTGTCTGCCACCACCTCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CCA 72 bp TCCCTAGCAGGTGGACTTATGAAGATCGGCCAGAGGTaGTGGCAGACACCACAGAGAACTGTGGGTGGGTGG +
Preference number: 3 (lower is better)
Translates to: SLAGGLMKIGQR*WQTPQRTVGGW
Trigger: CCACCCACCCACAGTTCTCTGTGGTGTCTGCCACCACCTCTGGCCGATCTTCATAAGTCCACCTGCTAGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CCA 72 bp CAGGGTCTTGATGCTCCAGCATCTCTCCATGGGCAGTaGGAGAGGCAAAAGAAGCCAGGACTACCCTCCCAC +
Preference number: 3 (lower is better)
Translates to: QGLDAPASLHGQ*ERQKKPGLPSH
Trigger: GTGGGAGGGTAGTCCTGGCTTCTTTTGCCTCTCCCACTGCCCATGGAGAGATGCTGGAGCATCAAGACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR CAA 90 bp ATCCCTGTGGGCTATGGGGAGACAGAAGCCAGGGGCCTTAAACAGAGGGTCTGTGGTGGTAAAGGAAGCTaGGCAGCTGGGAAGAGTGGA +
Preference number: 3 (lower is better)
Translates to: IPVGYGETEARGLKQRVCGGKGS*AAGKSG
Trigger: TCCACTCTTCCCAGCTGCCAAGCTTCCTTTACCACC...ACAGACCCTCTGTTTAAGGCCCCTGGCTTCTGTCTCCCCATAGCCCACAGGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR TCA 72 bp GGCTTCCGAAGGCCTCTGTTGGTCCTTGGTGTTGAGTaGGGAGCTCCAGAACTCCATGCCCAGATGGGAGAT +
Preference number: 3 (lower is better)
Translates to: GFRRPLLVLGVE*GAPELHAQMGD
Trigger: ATCTCCCATCTGGGCATGGAGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224288.2
3UTR GCA 72 bp AGAATGTCCCTGGTACGGCAGTATCCACAGATGAGCTaGACCAGGTCCTGGAACATGAGCTCTGAGCCCTCC +
Preference number: 3 (lower is better)
Translates to: RMSLVRQYPQMS*TRSWNMSSEPS
Trigger: GGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAGGGACATTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224288.2
ENSMUST00000237762.2
3UTR-3UTR CAA 90 bp AGGAGAGCAGCTCTGAGCCTGGCTGTGGTCCTCCTTTGTCCGGAAACAATCCTCGTACGACGGCAATGTTaGTGGAGCACCTCTCTGTTC +
Preference number: 3 (lower is better)
Translates to: RRAALSLAVVLLCPETILVRRQC*WSTSLF
Trigger: GAACAGAGAGGTGCTCCACAAACATTGCCGTCGTAC...GAGGATTGTTTCCGGACAAAGGAGGACCACAGCCAGGCTCAGAGCTGCTCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CCA 72 bp CCTGTTGGTATGTGCATCACATCTAAGTTGGTGCCCTaGTACTCAGAGGCCCAGGAGAGCAGCTCTGAGCCT +
Preference number: 3 (lower is better)
Translates to: PVGMCITSKLVP*YSEAQESSSEP
Trigger: AGGCTCAGAGCTGCTCTCCTGGGCCTCTGAGTACCAGGGCACCAACTTAGATGTGATGCACATACCAACAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR CAA 90 bp CCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTGGTGGTAAAGGAAGCTaGGCAGCTGGGAAGAGTGGA +
Preference number: 3 (lower is better)
Translates to: PCGCWDLNSGPSEEQLGAGGKGS*AAGKSG
Trigger: TCCACTCTTCCCAGCTGCCAAGCTTCCTTTACCACC...AGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR TCA 72 bp CAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTC +
Preference number: 3 (lower is better)
Translates to: QMVVSHHVVAGI*TLDLRKSSWVL
Trigger: GAGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CCA 72 bp GTCTACCTCCTGTTGGTATGTGCATCACATCTAAGTTaGTGCCCTGGTACTCAGAGGCCCAGGAGAGCAGCT +
Preference number: 3 (lower is better)
Translates to: VYLLLVCASHLS*CPGTQRPRRAA
Trigger: AGCTGCTCTCCTGGGCCTCTGAGTACCAGGGCACCAACTTAGATGTGATGCACATACCAACAGGAGGTAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR TCA 72 bp TGGACCTTCGGAAGAGCAGTTGGGTGCTCTTACCACTaGGCCATCTCACCAGCCCCTCAACAGATTTCTGAT +
Preference number: 3 (lower is better)
Translates to: WTFGRAVGCSYH*AISPAPQQISD
Trigger: ATCAGAAATCTGTTGAGGGGCTGGTGAGATGGCTCAGTGGTAAGAGCACCCAACTGCTCTTCCGAAGGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CCA 72 bp AAGGACCCAAGGAGTGGGGTACGACGGCAATGTTTGTaGAGCACCTCTCTGTTCTGGAAACTTCTCTTCCTG +
Preference number: 3 (lower is better)
Translates to: KDPRSGVRRQCL*STSLFWKLLFL
Trigger: CAGGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTACCCCACTCCTTGGGTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CCA 72 bp CAGCTTCTCGGGCTGTATGCGCCCTCTTGTGGCTTTTaGTGGGTATTTTTCTCTGCTCAGATTTGCAGTGGG +
Preference number: 3 (lower is better)
Translates to: QLLGLYAPSCGF*WVFFSAQICSG
Trigger: CCCACTGCAAATCTGAGCAGAGAAAAATACCCACCAAAAGCCACAAGAGGGCGCATACAGCCCGAGAAGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CCA 72 bp CTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTG +
Preference number: 3 (lower is better)
Translates to: LVTDGCEPPCGC*DLNSGPSEEQL
Trigger: CAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR-3UTR CAA 90 bp CTTCTAAGAATCTCTGACTATAAGGGGTCTCTGCTCTGCATGTCCCAAGCTGCTTTTCTCTGCTCAGATTaGCAGTGGGCTTCCCTCTGG +
Preference number: 3 (lower is better)
Translates to: LLRISDYKGSLLCMSQAAFLCSD*QWASLW
Trigger: CCAGAGGGAAGCCCACTGCAAATCTGAGCAGAGAAA...AGCAGCTTGGGACATGCAGAGCAGAGACCCCTTATAGTCAGAGATTCTTAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR GCA 72 bp CAGATTTCTGATCGTGAGAAAAGACTGGAACATAGATaGTTTCTCTCCTACGGCCTGACCTCCAGGGTGACA +
Preference number: 3 (lower is better)
Translates to: QISDREKRLEHR*FLSYGLTSRVT
Trigger: TGTCACCCTGGAGGTCAGGCCGTAGGAGAGAAAGCATCTATGTTCCAGTCTTTTCTCACGATCAGAAATCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CCA 72 bp GTACGACGGCAATGTTTGTGGAGCACCTCTCTGTTCTaGAAACTTCTCTTCCTGCTAGCGTGCATTATTTCT +
Preference number: 3 (lower is better)
Translates to: VRRQCLWSTSLF*KLLFLLACIIS
Trigger: AGAAATAATGCACGCTAGCAGGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR TCA 72 bp ACTTCAGTGTCTCAACAGATTTCTGTAGCTGTCTTCTaGCACACCACAAGAGGGAGTCAGATCTCGTTACAG +
Preference number: 3 (lower is better)
Translates to: TSVSQQISVAVF*HTTRGSQISLQ
Trigger: CTGTAACGAGATCTGACTCCCTCTTGTGGTGTGTCAGAAGACAGCTACAGAAATCTGTTGAGACACTGAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR GCA 72 bp ACCTCTCTGTTCTGGAAACTTCTCTTCCTGCTAGCGTaGATTATTTCTCAGGGTCCAATTTCCCAGAAATAC +
Preference number: 3 (lower is better)
Translates to: TSLFWKLLFLLA*IISQGPISQKY
Trigger: GTATTTCTGGGAAATTGGACCCTGAGAAATAATGCACGCTAGCAGGAAGAGAAGTTTCCAGAACAGAGAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR TCA 90 bp AGGCCCAGGAGAGCAGCTCTGAGCCTGGCTGTGGTCCTCCTTTGTCCGGAAACAGCTCCTGTGCTGGGCTaGGTGGCAGTGCTCGGGCCT +
Preference number: 4 (lower is better)
Translates to: RPRRAALSLAVVLLCPETAPVLG*VAVLGP
Trigger: AGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGC...TGTTTCCGGACAAAGGAGGACCACAGCCAGGCTCAGAGCTGCTCTCCTGGGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp AGGCCCAGGAGAGCAGCTCTGAGCCTGGCTGTGGTCCTCCTTTGTCCGGAAACATTAGGGCCTGGCGGATaGCCTGCAACTCCCGGGGCT +
Preference number: 4 (lower is better)
Translates to: RPRRAALSLAVVLLCPETLGPGG*PATPGA
Trigger: AGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAA...TGTTTCCGGACAAAGGAGGACCACAGCCAGGCTCAGAGCTGCTCTCCTGGGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp AGGCCCAGGAGAGCAGCTCTGAGCCTGGCTGTGGTCCTCCTTTGTCCGGAAACACTCCTCCCATGCTCCTaGCTCTGGCCCCTTGCTGCC +
Preference number: 4 (lower is better)
Translates to: RPRRAALSLAVVLLCPETLLPCS*LWPLAA
Trigger: GGCAGCAAGGGGCCAGAGGCAGGAGCATGGGAGGAG...TGTTTCCGGACAAAGGAGGACCACAGCCAGGCTCAGAGCTGCTCTCCTGGGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp TATGGGGAGACAGAAGCCAGGGGCCTTAAACAGAGGGTCTGTGAGTCTCCCAGCGCTGCCCGGCCCACCTaGCTCTCTGGTGCCAGCAGA +
Preference number: 4 (lower is better)
Translates to: YGETEARGLKQRVCESPSAARPT*LSGASR
Trigger: TCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGC...GCTGGGAGACTCACAGACCCTCTGTTTAAGGCCCCTGGCTTCTGTCTCCCCATA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp TGGGTGGGTGGTAAAGGAAGCTTGGCAGCTGGGAAGAGTGGACTTAGAGGCTCCTGGAAGCACCGGGACTaGGGGAGGCGGCACAGCAGG +
Preference number: 4 (lower is better)
Translates to: WVGGKGSLAAGKSGLRGSWKHRD*GRRHSR
Trigger: CCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCA...GGAGCCTCTAAGTCCACTCTTCCCAGCTGCCAAGCTTCCTTTACCACCCACCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp AAGGAAGCTTGGCAGCTGGGAAGAGTGGACTTAGAGGCTCCCGGGGGCCCAGGTGCACAGCCAGGGTCTTaGAGGTGCAACCTGTGCTGG +
Preference number: 4 (lower is better)
Translates to: KEAWQLGRVDLEAPGGPGAQPGS*RCNLCW
Trigger: CCAGCACAGGTTGCACCTCCAAGACCCTGGCTGTGC...ACCTGGGCCCCCGGGAGCCTCTAAGTCCACTCTTCCCAGCTGCCAAGCTTCCTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp ATCCCTGTGGGCTATGGGGAGACAGAAGCCAGGGGCCTTAAACAGAGGGTCTGTGCGCTGGAGCTCCTGTaGTGGGCTGAGTGGCAGTGC +
Preference number: 4 (lower is better)
Translates to: IPVGYGETEARGLKQRVCALELL*WAEWQC
Trigger: GCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGC...ACAGACCCTCTGTTTAAGGCCCCTGGCTTCTGTCTCCCCATAGCCCACAGGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp GACCTTCGGAAGAGCAGTTGGGTGCTCTTACCACTGAGCCATCTCACCAGCCCCGTACGTGCTGGCTGTTaGGACCCGCCTGCCTGTACC +
Preference number: 4 (lower is better)
Translates to: DLRKSSWVLLPLSHLTSPVRAGC*DPPACT
Trigger: GGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTAC...GGGGCTGGTGAGATGGCTCAGTGGTAAGAGCACCCAACTGCTCTTCCGAAGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp CTTGATGCTCCAGCATCTCTCCATGGGCAGTGGGAGAGGCAAAAGAAGCCAGGATGGAAGCACCGGGACTaGGGGAGGCGGCACAGCAGG +
Preference number: 4 (lower is better)
Translates to: LDAPASLHGQWERQKKPGWKHRD*GRRHSR
Trigger: CCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCA...TCCTGGCTTCTTTTGCCTCTCCCACTGCCCATGGAGAGATGCTGGAGCATCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR TCA 90 bp GACCTTCGGAAGAGCAGTTGGGTGCTCTTACCACTGAGCCATCTCACCAGCCCCGCTCAACGTGGCAATTaGAGACCCTGGGGGCACAGC +
Preference number: 4 (lower is better)
Translates to: DLRKSSWVLLPLSHLTSPAQRGN*RPWGHS
Trigger: GCTGTGCCCCCAGGGTCTTCAATTGCCACGTTGAGC...GGGGCTGGTGAGATGGCTCAGTGGTAAGAGCACCCAACTGCTCTTCCGAAGGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp ATCCCTGTGGGCTATGGGGAGACAGAAGCCAGGGGCCTTAAACAGAGGGTCTGTACTGAGCTCTCCCTCTaGAGCAGCTGTCGAGGGGGC +
Preference number: 4 (lower is better)
Translates to: IPVGYGETEARGLKQRVCTELSL*SSCRGG
Trigger: GCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGT...ACAGACCCTCTGTTTAAGGCCCCTGGCTTCTGTCTCCCCATAGCCCACAGGGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp TCTTGGGAATTACCTAACCTGTACTGCCGTGGGGCCCACAGCTACACCATTCCTGCTGCCCGGCCCACCTaGCTCTCTGGTGCCAGCAGA +
Preference number: 4 (lower is better)
Translates to: SWELPNLYCRGAHSYTIPAARPT*LSGASR
Trigger: TCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGC...AGGAATGGTGTAGCTGTGGGCCCCACGGCAGTACAGGTTAGGTAATTCCCAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp GGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTCTTACCGCCGAGGGAACCATCTaGGGAAAGCCGGCGCCGCAG +
Preference number: 4 (lower is better)
Translates to: GCWDLNSGPSEEQLGALTAEGTI*GKPAPQ
Trigger: CTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGC...GGTAAGAGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp AGGAGAGCAGCTCTGAGCCTGGCTGTGGTCCTCCTTTGTCCGGAAACAATCCTCGGGGCCACTAGCTTCTaGCAGCCGCACACACAGAGC +
Preference number: 4 (lower is better)
Translates to: RRAALSLAVVLLCPETILGATSF*QPHTQS
Trigger: GCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCC...GAGGATTGTTTCCGGACAAAGGAGGACCACAGCCAGGCTCAGAGCTGCTCTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp TCTTGGGAATTACCTAACCTGTACTGCCGTGGGGCCCACAGCTACACCATTCCTGCTCTGCGCTCAGCATaGCCCGGGCCCGACTTAGGG +
Preference number: 4 (lower is better)
Translates to: SWELPNLYCRGAHSYTIPALRSA*PGPDLG
Trigger: CCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGC...AGGAATGGTGTAGCTGTGGGCCCCACGGCAGTACAGGTTAGGTAATTCCCAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp AGGAGAGCAGCTCTGAGCCTGGCTGTGGTCCTCCTTTGTCCGGAAACAATCCTCGTTGCAGGAAGCCTGTaGGCTAGGGCTTCAGGGGGC +
Preference number: 4 (lower is better)
Translates to: RRAALSLAVVLLCPETILVAGSL*ARASGG
Trigger: GCCCCCTGAAGCCCTAGCCCACAGGCTTCCTGCAAC...GAGGATTGTTTCCGGACAAAGGAGGACCACAGCCAGGCTCAGAGCTGCTCTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR TCA 90 bp AAGGAAGCTTGGCAGCTGGGAAGAGTGGACTTAGAGGCTCCCGGGGGCCCAGGTGTCCTTGGTGTTGAGTaGGGAGCTCCAGAACTCCAT +
Preference number: 4 (lower is better)
Translates to: KEAWQLGRVDLEAPGGPGVLGVE*GAPELH
Trigger: ATGGAGTTCTGGAGCTCCTCACTCAACACCAAGGAC...ACCTGGGCCCCCGGGAGCCTCTAAGTCCACTCTTCCCAGCTGCCAAGCTTCCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR TCA 90 bp ATCCCTGTGGGCTATGGGGAGACAGAAGCCAGGGGCCTTAAACAGAGGGTCTGTAGGTCCTGCACTAGCTaGCCCACGGCTGTGTATCGG +
Preference number: 4 (lower is better)
Translates to: IPVGYGETEARGLKQRVCRSCTS*PTAVYR
Trigger: CCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCT...ACAGACCCTCTGTTTAAGGCCCCTGGCTTCTGTCTCCCCATAGCCCACAGGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR TCA 90 bp GACCTTCGGAAGAGCAGTTGGGTGCTCTTACCACTGAGCCATCTCACCAGCCCCTGGGTCGAAGAGGCTTaGGAACAGAGCGATGCAGGG +
Preference number: 4 (lower is better)
Translates to: DLRKSSWVLLPLSHLTSPWVEEA*EQSDAG
Trigger: CCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCA...GGGGCTGGTGAGATGGCTCAGTGGTAAGAGCACCCAACTGCTCTTCCGAAGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR TCA 90 bp CTGCCGTGGGGCCCACAGCTACACCATTCCTCATTATCAAGCTTTAGTAAGGACGCTCCTGTGCTGGGCTaGGTGGCAGTGCTCGGGCCT +
Preference number: 4 (lower is better)
Translates to: LPWGPQLHHSSLSSFSKDAPVLG*VAVLGP
Trigger: AGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGC...GTCCTTACTAAAGCTTGATAATGAGGAATGGTGTAGCTGTGGGCCCCACGGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp CAAAAGAAGCCAGGACTACCCTCCCACCACGCCCCTATGGCTATCAGGAGGATTACTGAGCTCTCCCTCTaGAGCAGCTGTCGAGGGGGC +
Preference number: 4 (lower is better)
Translates to: QKKPGLPSHHAPMAIRRITELSL*SSCRGG
Trigger: GCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGT...AATCCTCCTGATAGCCATAGGGGCGTGGTGGGAGGGTAGTCCTGGCTTCTTTTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp GTACGACGGCAATGTTTGTGGAGCACCTCTCTGTTCTGGAAACTTCTCTTCCTGCTCAGGGCCCAGCTCTaGGCTCAGCATGGCCCGGGC +
Preference number: 4 (lower is better)
Translates to: VRRQCLWSTSLFWKLLFLLRAQL*AQHGPG
Trigger: GCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAG...CAGGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp ATCCCTGTGGGCTATGGGGAGACAGAAGCCAGGGGCCTTAAACAGAGGGTCTGTAGCAGCTTGCAGGCCTaGAGGAGCCACTTGACCTGG +
Preference number: 4 (lower is better)
Translates to: IPVGYGETEARGLKQRVCSSLQA*RSHLTW
Trigger: CCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCT...ACAGACCCTCTGTTTAAGGCCCCTGGCTTCTGTCTCCCCATAGCCCACAGGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp AGGAGAGCAGCTCTGAGCCTGGCTGTGGTCCTCCTTTGTCCGGAAACAATCCTCAGCAGCTTGCAGGCCTaGAGGAGCCACTTGACCTGG +
Preference number: 4 (lower is better)
Translates to: RRAALSLAVVLLCPETILSSLQA*RSHLTW
Trigger: CCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCT...GAGGATTGTTTCCGGACAAAGGAGGACCACAGCCAGGCTCAGAGCTGCTCTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp ACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCGCGCTGGAGCTCCTGTaGTGGGCTGAGTGGCAGTGC +
Preference number: 4 (lower is better)
Translates to: TMWLLGFELWTFGRAVGCALELL*WAEWQC
Trigger: GCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGC...GCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp TATGGGGAGACAGAAGCCAGGGGCCTTAAACAGAGGGTCTGTGAGTCTCCCAGCCCAGGGTCTTGGAGGTaGAACCTGTGCTGGGGTCCT +
Preference number: 4 (lower is better)
Translates to: YGETEARGLKQRVCESPSPGSWR*NLCWGP
Trigger: AGGACCCCAGCACAGGTTGCACCTCCAAGACCCTGG...GCTGGGAGACTCACAGACCCTCTGTTTAAGGCCCCTGGCTTCTGTCTCCCCATA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp TGGGTGGGTGGTAAAGGAAGCTTGGCAGCTGGGAAGAGTGGACTTAGAGGCTCCGCCCACCTGCCTCTCTaGTGCCAGCAGAGAGCAGAA +
Preference number: 4 (lower is better)
Translates to: WVGGKGSLAAGKSGLRGSAHLPL*CQQRAE
Trigger: TTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGC...GGAGCCTCTAAGTCCACTCTTCCCAGCTGCCAAGCTTCCTTTACCACCCACCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp AGGAGAGCAGCTCTGAGCCTGGCTGTGGTCCTCCTTTGTCCGGAAACAATCCTCGGACCAGCCCGAACCTaGGTCAGTAGGTCCTGCACT +
Preference number: 4 (lower is better)
Translates to: RRAALSLAVVLLCPETILGPART*VSRSCT
Trigger: AGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCC...GAGGATTGTTTCCGGACAAAGGAGGACCACAGCCAGGCTCAGAGCTGCTCTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp AGGTGGACTTATGAAGATCGGCCAGAGGTGGTGGCAGACACCACAGAGAACTGTGCCCGACTTAGGGCCTaGCGGATGCCCTGCAACTCC +
Preference number: 4 (lower is better)
Translates to: RWTYEDRPEVVADTTENCARLRA*RMPCNS
Trigger: GGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGC...ACAGTTCTCTGTGGTGTCTGCCACCACCTCTGGCCGATCTTCATAAGTCCACCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp GTACGACGGCAATGTTTGTGGAGCACCTCTCTGTTCTGGAAACTTCTCTTCCTGAAGGCTCCAGGCCCCTaGGTCCGGGCCAGGCGGAAG +
Preference number: 4 (lower is better)
Translates to: VRRQCLWSTSLFWKLLFLKAPGP*VRARRK
Trigger: CTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTT...CAGGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp GGAGTTGCACAGGGTCTTGATGCTCCAGCATCTCTCCATGGGCAGTGGGAGAGGGAAGAAAGAGTCAGGTaGGACCCGAAGGCTCCAGGC +
Preference number: 4 (lower is better)
Translates to: GVAQGLDAPASLHGQWEREERVR*DPKAPG
Trigger: GCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTC...CCTCTCCCACTGCCCATGGAGAGATGCTGGAGCATCAAGACCCTGTGCAACTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp GACCTTCGGAAGAGCAGTTGGGTGCTCTTACCACTGAGCCATCTCACCAGCCCCAGCTGCAGCAGCTTCTaGCGCACCTGTTCTGTCTCC +
Preference number: 4 (lower is better)
Translates to: DLRKSSWVLLPLSHLTSPSCSSF*RTCSVS
Trigger: GGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCT...GGGGCTGGTGAGATGGCTCAGTGGTAAGAGCACCCAACTGCTCTTCCGAAGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp AAGGAAGCTTGGCAGCTGGGAAGAGTGGACTTAGAGGCTCCCGGGGGCCCAGGTGCATTCTCTCCTGCCTaGCTCTTCAGGGCTGTGTAT +
Preference number: 4 (lower is better)
Translates to: KEAWQLGRVDLEAPGGPGAFSPA*LFRAVY
Trigger: ATACACAGCCCTGAAGAGCCAGGCAGGAGAGAATGC...ACCTGGGCCCCCGGGAGCCTCTAAGTCCACTCTTCCCAGCTGCCAAGCTTCCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp CTGCCGTGGGGCCCACAGCTACACCATTCCTCATTATCAAGCTTTAGTAAGGACGCTGGAAGCTGTGGGTaGCCGGCAGGCGGCGCTGTT +
Preference number: 4 (lower is better)
Translates to: LPWGPQLHHSSLSSFSKDAGSCG*PAGGAV
Trigger: AACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAGC...GTCCTTACTAAAGCTTGATAATGAGGAATGGTGTAGCTGTGGGCCCCACGGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR TCA 90 bp TGGGTGGGTGGTAAAGGAAGCTTGGCAGCTGGGAAGAGTGGACTTAGAGGCTCCCACACGATATCCCACTaGGCTCTCCCTCTGCAGCAG +
Preference number: 4 (lower is better)
Translates to: WVGGKGSLAAGKSGLRGSHTISH*ALPLQQ
Trigger: CTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTG...GGAGCCTCTAAGTCCACTCTTCCCAGCTGCCAAGCTTCCTTTACCACCCACCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR TCA 90 bp AGGTGGACTTATGAAGATCGGCCAGAGGTGGTGGCAGACACCACAGAGAACTGTAGAGCCCTCCTCCTCTaGGCTGCTGGGAGAGCAGCA +
Preference number: 4 (lower is better)
Translates to: RWTYEDRPEVVADTTENCRALLL*AAGRAA
Trigger: TGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCT...ACAGTTCTCTGTGGTGTCTGCCACCACCTCTGGCCGATCTTCATAAGTCCACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR TCA 90 bp GGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTCTTACCAGCCACCCTCTCCAGTaGGCAGGGTGGGTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: GCWDLNSGPSEEQLGALTSHPLQ*AGWVPG
Trigger: TCCTGGAACCCACCCTGCTCACTGGAGAGGGTGGCT...GGTAAGAGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp CTTCTAAGAATCTCTGACTATAAGGGGTCTCTGCTCTGCATGTCCCAAGCTGCTCTCAGGGCCCAGCTCTaGGCTCAGCATGGCCCGGGC +
Preference number: 4 (lower is better)
Translates to: LLRISDYKGSLLCMSQAALRAQL*AQHGPG
Trigger: GCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAG...AGCAGCTTGGGACATGCAGAGCAGAGACCCCTTATAGTCAGAGATTCTTAGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp GACCTTCGGAAGAGCAGTTGGGTGCTCTTACCACTGAGCCATCTCACCAGCCCCCTGCCTCTGGCCCCTTaGTGCCTGTCTTTGCCTTTT +
Preference number: 4 (lower is better)
Translates to: DLRKSSWVLLPLSHLTSPLPLAP*CLSLPF
Trigger: AAAAGGCAAAGACAGGCAGCAAGGGGCCAGAGGCAG...GGGGCTGGTGAGATGGCTCAGTGGTAAGAGCACCCAACTGCTCTTCCGAAGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp GGGTACGACGGCAATGTTTGTGGAGCACCTCTCTGTTCTGGAAACTTCTCTTCCCTCCTCCCATGCTCCTaGCTCTGGCCCCTTGCTGCC +
Preference number: 4 (lower is better)
Translates to: GYDGNVCGAPLCSGNFSSLLPCS*LWPLAA
Trigger: GGCAGCAAGGGGCCAGAGGCAGGAGCATGGGAGGAG...GGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp CAAAAGAAGCCAGGACTACCCTCCCACCACGCCCCTATGGCTATCAGGAGGATTTGTCTCCTCCTCCCATaGTCCTGCCTCTGGCCCCTT +
Preference number: 4 (lower is better)
Translates to: QKKPGLPSHHAPMAIRRICLLLP*SCLWPL
Trigger: AAGGGGCCAGAGGCAGGAGCATGGGAGGAGGAGACA...AATCCTCCTGATAGCCATAGGGGCGTGGTGGGAGGGTAGTCCTGGCTTCTTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp TATGGGGAGACAGAAGCCAGGGGCCTTAAACAGAGGGTCTGTGAGTCTCCCAGCAGCTGCACCAGGTCCTaGAACATGAGCTCTGAGCCC +
Preference number: 4 (lower is better)
Translates to: YGETEARGLKQRVCESPSSCTRS*NMSSEP
Trigger: GGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCT...GCTGGGAGACTCACAGACCCTCTGTTTAAGGCCCCTGGCTTCTGTCTCCCCATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp CTTGATGCTCCAGCATCTCTCCATGGGCAGTGGGAGAGGCAAAAGAAGCCAGGAGGACCAGCCCGAACCTaGGTCAGTAGGTCCTGCACT +
Preference number: 4 (lower is better)
Translates to: LDAPASLHGQWERQKKPGGPART*VSRSCT
Trigger: AGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCC...TCCTGGCTTCTTTTGCCTCTCCCACTGCCCATGGAGAGATGCTGGAGCATCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp TATGGGGAGACAGAAGCCAGGGGCCTTAAACAGAGGGTCTGTGAGTCTCCCAGCGAAGAAAGAGTCAGGTaGGACCCGAAGGCTCCAGGC +
Preference number: 4 (lower is better)
Translates to: YGETEARGLKQRVCESPSEERVR*DPKAPG
Trigger: GCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTC...GCTGGGAGACTCACAGACCCTCTGTTTAAGGCCCCTGGCTTCTGTCTCCCCATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp TCTTGGGAATTACCTAACCTGTACTGCCGTGGGGCCCACAGCTACACCATTCCTCTGGAGCTCCTGTGCTaGGCTGAGTGGCAGTGCTCG +
Preference number: 4 (lower is better)
Translates to: SWELPNLYCRGAHSYTIPLELLC*AEWQCS
Trigger: CGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAG...AGGAATGGTGTAGCTGTGGGCCCCACGGCAGTACAGGTTAGGTAATTCCCAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR TCA 90 bp CTTGATGCTCCAGCATCTCTCCATGGGCAGTGGGAGAGGCAAAAGAAGCCAGGAGGCAGTATCCACAGATaGGCTGCACCAGGTCCTGGA +
Preference number: 4 (lower is better)
Translates to: LDAPASLHGQWERQKKPGGSIHR*AAPGPG
Trigger: TCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCC...TCCTGGCTTCTTTTGCCTCTCCCACTGCCCATGGAGAGATGCTGGAGCATCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR TCA 90 bp GGGTACGACGGCAATGTTTGTGGAGCACCTCTCTGTTCTGGAAACTTCTCTTCCAGAGCCCTCCTCCTCTaGGCTGCTGGGAGAGCAGCA +
Preference number: 4 (lower is better)
Translates to: GYDGNVCGAPLCSGNFSSRALLL*AAGRAA
Trigger: TGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCT...GGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR TCA 90 bp CTGCCGTGGGGCCCACAGCTACACCATTCCTCATTATCAAGCTTTAGTAAGGACAGCCACCCTCTCCAGTaGGCAGGGTGGGTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: LPWGPQLHHSSLSSFSKDSHPLQ*AGWVPG
Trigger: TCCTGGAACCCACCCTGCTCACTGGAGAGGGTGGCT...GTCCTTACTAAAGCTTGATAATGAGGAATGGTGTAGCTGTGGGCCCCACGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp TGGGTGGGTGGTAAAGGAAGCTTGGCAGCTGGGAAGAGTGGACTTAGAGGCTCCAGCTCCAGAACTCCATaGCCAGATGGGAGATGGCCT +
Preference number: 4 (lower is better)
Translates to: WVGGKGSLAAGKSGLRGSSSRTP*PDGRWP
Trigger: AGGCCATCTCCCATCTGGGCATGGAGTTCTGGAGCT...GGAGCCTCTAAGTCCACTCTTCCCAGCTGCCAAGCTTCCTTTACCACCCACCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp GACCTTCGGAAGAGCAGTTGGGTGCTCTTACCACTGAGCCATCTCACCAGCCCCTTGAGAACAGAGCGATaGAGGGACTTCTCCAGGACC +
Preference number: 4 (lower is better)
Translates to: DLRKSSWVLLPLSHLTSPLRTER*RDFSRT
Trigger: GGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAA...GGGGCTGGTGAGATGGCTCAGTGGTAAGAGCACCCAACTGCTCTTCCGAAGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp CTTCTAAGAATCTCTGACTATAAGGGGTCTCTGCTCTGCATGTCCCAAGCTGCTGCCGAGGGAACCATCTaGGGAAAGCCGGCGCCGCAG +
Preference number: 4 (lower is better)
Translates to: LLRISDYKGSLLCMSQAAAEGTI*GKPAPQ
Trigger: CTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGC...AGCAGCTTGGGACATGCAGAGCAGAGACCCCTTATAGTCAGAGATTCTTAGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp TATGGGGAGACAGAAGCCAGGGGCCTTAAACAGAGGGTCTGTGAGTCTCCCAGCCTGTGTATAGCAGCTTaGAGGCCTGCAGGAGCCACT +
Preference number: 4 (lower is better)
Translates to: YGETEARGLKQRVCESPSLCIAA*RPAGAT
Trigger: AGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAG...GCTGGGAGACTCACAGACCCTCTGTTTAAGGCCCCTGGCTTCTGTCTCCCCATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp TATGGGGAGACAGAAGCCAGGGGCCTTAAACAGAGGGTCTGTGAGTCTCCCAGCACCTGCATTCTCTCCTaGCTGGCTCTTCAGGGCTGT +
Preference number: 4 (lower is better)
Translates to: YGETEARGLKQRVCESPSTCILS*LALQGC
Trigger: ACAGCCCTGAAGAGCCAGGCAGGAGAGAATGCAGGT...GCTGGGAGACTCACAGACCCTCTGTTTAAGGCCCCTGGCTTCTGTCTCCCCATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp AGGTGGACTTATGAAGATCGGCCAGAGGTGGTGGCAGACACCACAGAGAACTGTGCTACTCGGAGGAGATaGTGGAAGCTGTGGGTGGCC +
Preference number: 4 (lower is better)
Translates to: RWTYEDRPEVVADTTENCATRRR*WKLWVA
Trigger: GGCCACCCACAGCTTCCAGCATCTCCTCCGAGTAGC...ACAGTTCTCTGTGGTGTCTGCCACCACCTCTGGCCGATCTTCATAAGTCCACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp CCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTGCTACTCGGAGGAGATaGTGGAAGCTGTGGGTGGCC +
Preference number: 4 (lower is better)
Translates to: PCGCWDLNSGPSEEQLGAATRRR*WKLWVA
Trigger: GGCCACCCACAGCTTCCAGCATCTCCTCCGAGTAGC...AGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp AGGTGGACTTATGAAGATCGGCCAGAGGTGGTGGCAGACACCACAGAGAACTGTCCAGGGTCTTGGAGGTaGAACCTGTGCTGGGGTCCT +
Preference number: 4 (lower is better)
Translates to: RWTYEDRPEVVADTTENCPGSWR*NLCWGP
Trigger: AGGACCCCAGCACAGGTTGCACCTCCAAGACCCTGG...ACAGTTCTCTGTGGTGTCTGCCACCACCTCTGGCCGATCTTCATAAGTCCACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp TGGGTGGGTGGTAAAGGAAGCTTGGCAGCTGGGAAGAGTGGACTTAGAGGCTCCCCTCTGGCCCCTTGCTaGCTGTCTTTGCCTTTTCTG +
Preference number: 4 (lower is better)
Translates to: WVGGKGSLAAGKSGLRGSPLAPC*LSLPFL
Trigger: CAGAAAAGGCAAAGACAGGCAGCAAGGGGCCAGAGG...GGAGCCTCTAAGTCCACTCTTCCCAGCTGCCAAGCTTCCTTTACCACCCACCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp ATCCCTGTGGGCTATGGGGAGACAGAAGCCAGGGGCCTTAAACAGAGGGTCTGTCTGCCTCTGGCCCCTTaGTGCCTGTCTTTGCCTTTT +
Preference number: 4 (lower is better)
Translates to: IPVGYGETEARGLKQRVCLPLAP*CLSLPF
Trigger: AAAAGGCAAAGACAGGCAGCAAGGGGCCAGAGGCAG...ACAGACCCTCTGTTTAAGGCCCCTGGCTTCTGTCTCCCCATAGCCCACAGGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp AGGTGGACTTATGAAGATCGGCCAGAGGTGGTGGCAGACACCACAGAGAACTGTTGTCTCCTCCTCCCATaGTCCTGCCTCTGGCCCCTT +
Preference number: 4 (lower is better)
Translates to: RWTYEDRPEVVADTTENCCLLLP*SCLWPL
Trigger: AAGGGGCCAGAGGCAGGAGCATGGGAGGAGGAGACA...ACAGTTCTCTGTGGTGTCTGCCACCACCTCTGGCCGATCTTCATAAGTCCACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp AGGAGAGCAGCTCTGAGCCTGGCTGTGGTCCTCCTTTGTCCGGAAACAATCCTCCACAGAGCCTGGCACTaGCGAGTGTTAGATTTCCGC +
Preference number: 4 (lower is better)
Translates to: RRAALSLAVVLLCPETILHRAWH*RVLDFR
Trigger: GCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTG...GAGGATTGTTTCCGGACAAAGGAGGACCACAGCCAGGCTCAGAGCTGCTCTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp CTGCCGTGGGGCCCACAGCTACACCATTCCTCATTATCAAGCTTTAGTAAGGACGGGGCCACTAGCTTCTaGCAGCCGCACACACAGAGC +
Preference number: 4 (lower is better)
Translates to: LPWGPQLHHSSLSSFSKDGATSF*QPHTQS
Trigger: GCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCC...GTCCTTACTAAAGCTTGATAATGAGGAATGGTGTAGCTGTGGGCCCCACGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp TGGGTGGGTGGTAAAGGAAGCTTGGCAGCTGGGAAGAGTGGACTTAGAGGCTCCAGAAAGCAGAACTCATaGACCGAAGCAGAGGCCGCC +
Preference number: 4 (lower is better)
Translates to: WVGGKGSLAAGKSGLRGSRKQNS*TEAEAA
Trigger: GGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCT...GGAGCCTCTAAGTCCACTCTTCCCAGCTGCCAAGCTTCCTTTACCACCCACCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp TCTTGGGAATTACCTAACCTGTACTGCCGTGGGGCCCACAGCTACACCATTCCTGCCCACCTGCCTCTCTaGTGCCAGCAGAGAGCAGAA +
Preference number: 4 (lower is better)
Translates to: SWELPNLYCRGAHSYTIPAHLPL*CQQRAE
Trigger: TTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGC...AGGAATGGTGTAGCTGTGGGCCCCACGGCAGTACAGGTTAGGTAATTCCCAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp CCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTGGCTGGCTGAGAGGCTaGTCAGGTAGTAGCCACCCT +
Preference number: 4 (lower is better)
Translates to: PCGCWDLNSGPSEEQLGAGWLRG*SGSSHP
Trigger: AGGGTGGCTACTACCTGACCAGCCTCTCAGCCAGCC...AGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp TCTTGGGAATTACCTAACCTGTACTGCCGTGGGGCCCACAGCTACACCATTCCTGGCAGTGCTCGGGCCTaGCTTAGGCCACTCAACAAG +
Preference number: 4 (lower is better)
Translates to: SWELPNLYCRGAHSYTIPGSARA*LRPLNK
Trigger: CTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCC...AGGAATGGTGTAGCTGTGGGCCCCACGGCAGTACAGGTTAGGTAATTCCCAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp TCAGATCTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACGCTGGAAGCTGTGGGTaGCCGGCAGGCGGCGCTGTT +
Preference number: 4 (lower is better)
Translates to: SDLVTDGCEPPCGCWDLNAGSCG*PAGGAV
Trigger: AACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAGC...GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAGATCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp GGGTACGACGGCAATGTTTGTGGAGCACCTCTCTGTTCTGGAAACTTCTCTTCCGTTGCAGGAAGCCTGTaGGCTAGGGCTTCAGGGGGC +
Preference number: 4 (lower is better)
Translates to: GYDGNVCGAPLCSGNFSSVAGSL*ARASGG
Trigger: GCCCCCTGAAGCCCTAGCCCACAGGCTTCCTGCAAC...GGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTACCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp GGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTCTTACCCCATGCTCCTGCCTCTaGCCCCTTGCTGCCTGTCTT +
Preference number: 4 (lower is better)
Translates to: GCWDLNSGPSEEQLGALTPCSCL*PLAACL
Trigger: AAGACAGGCAGCAAGGGGCCAGAGGCAGGAGCATGG...GGTAAGAGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR TCA 90 bp CCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTCACACGATATCCCACTaGGCTCTCCCTCTGCAGCAG +
Preference number: 4 (lower is better)
Translates to: PCGCWDLNSGPSEEQLGAHTISH*ALPLQQ
Trigger: CTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTG...AGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR TCA 90 bp CCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTTGGGTCGAAGAGGCTTaGGAACAGAGCGATGCAGGG +
Preference number: 4 (lower is better)
Translates to: PCGCWDLNSGPSEEQLGAWVEEA*EQSDAG
Trigger: CCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCA...AGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR TCA 90 bp CTGCCGTGGGGCCCACAGCTACACCATTCCTCATTATCAAGCTTTAGTAAGGACGCTCAACGTGGCAATTaGAGACCCTGGGGGCACAGC +
Preference number: 4 (lower is better)
Translates to: LPWGPQLHHSSLSSFSKDAQRGN*RPWGHS
Trigger: GCTGTGCCCCCAGGGTCTTCAATTGCCACGTTGAGC...GTCCTTACTAAAGCTTGATAATGAGGAATGGTGTAGCTGTGGGCCCCACGGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp CTTGATGCTCCAGCATCTCTCCATGGGCAGTGGGAGAGGCAAAAGAAGCCAGGACTCTTTGTGGGTGGCTaGCTGATGAATGGCTCTGGG +
Preference number: 4 (lower is better)
Translates to: LDAPASLHGQWERQKKPGLFVGG*LMNGSG
Trigger: CCCAGAGCCATTCATCAGGCAGCCACCCACAAAGAG...TCCTGGCTTCTTTTGCCTCTCCCACTGCCCATGGAGAGATGCTGGAGCATCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025818.8
CDS-3UTR GCA 90 bp AGGTGGACTTATGAAGATCGGCCAGAGGTGGTGGCAGACACCACAGAGAACTGTCACCTGCCTCTCTGGTaGCAGCAGAGAGCAGAAAGC +
Preference number: 4 (lower is better)
Translates to: RWTYEDRPEVVADTTENCHLPLW*QQRAES
Trigger: GCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTG...ACAGTTCTCTGTGGTGTCTGCCACCACCTCTGGCCGATCTTCATAAGTCCACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp CTGTATGCGCCCTCTTGTGGCTTTTGGTGGGTATTTTTCTCTGCTCAGATTTGCTTAGGGCCTGGCGGATaGCCTGCAACTCCCGGGGCT +
Preference number: 4 (lower is better)
Translates to: LYAPSCGFWWVFFSAQICLGPGG*PATPGA
Trigger: AGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAA...GCAAATCTGAGCAGAGAAAAATACCCACCAAAAGCCACAAGAGGGCGCATACAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp ATCCCTGTGGGCTATGGGGAGACAGAAGCCAGGGGCCTTAAACAGAGGGTCTGTTTGAGAACAGAGCGATaGAGGGACTTCTCCAGGACC +
Preference number: 4 (lower is better)
Translates to: IPVGYGETEARGLKQRVCLRTER*RDFSRT
Trigger: GGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAA...ACAGACCCTCTGTTTAAGGCCCCTGGCTTCTGTCTCCCCATAGCCCACAGGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp GGCCTCTGTTGGTCCTTGGTGTTGAGTGAGGAGCTCCAGAACTCCATGCCCAGAGTACAAAGTTCAGGTTaGTGGCTCCCAGAGGGTGTG +
Preference number: 4 (lower is better)
Translates to: GLCWSLVLSEELQNSMPRVQSSG*WLPEGV
Trigger: CACACCCTCTGGGAGCCACCAACCTGAACTTTGTAC...TCTGGGCATGGAGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224288.2
CDS-3UTR CCA 90 bp AGGAGAGCAGCTCTGAGCCTGGCTGTGGTCCTCCTTTGTCCGGAAACAATCCTCGTACAAAGTTCAGGTTaGTGGCTCCCAGAGGGTGTG +
Preference number: 4 (lower is better)
Translates to: RRAALSLAVVLLCPETILVQSSG*WLPEGV
Trigger: CACACCCTCTGGGAGCCACCAACCTGAACTTTGTAC...GAGGATTGTTTCCGGACAAAGGAGGACCACAGCCAGGCTCAGAGCTGCTCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp TCTTGGGAATTACCTAACCTGTACTGCCGTGGGGCCCACAGCTACACCATTCCTTGCCCAGATGGGAGATaGCCTCCAGCTCTTTGTGGG +
Preference number: 4 (lower is better)
Translates to: SWELPNLYCRGAHSYTIPCPDGR*PPALCG
Trigger: CCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCA...AGGAATGGTGTAGCTGTGGGCCCCACGGCAGTACAGGTTAGGTAATTCCCAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp GGAGTTGCACAGGGTCTTGATGCTCCAGCATCTCTCCATGGGCAGTGGGAGAGGGTCTTTCCGTTTGGCTaGAAGATGTCCCTGGAAGCA +
Preference number: 4 (lower is better)
Translates to: GVAQGLDAPASLHGQWERVFPFG*KMSLEA
Trigger: TGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGAC...CCTCTCCCACTGCCCATGGAGAGATGCTGGAGCATCAAGACCCTGTGCAACTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp ATTTCTGATCGTGAGAAAAGACTGGAACATAGATGCTTTCTCTCCTACGGCCTGAAGGCTCCAGGCCCCTaGGTCCGGGCCAGGCGGAAG +
Preference number: 4 (lower is better)
Translates to: ISDREKRLEHRCFLSYGLKAPGP*VRARRK
Trigger: CTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTT...CAGGCCGTAGGAGAGAAAGCATCTATGTTCCAGTCTTTTCTCACGATCAGAAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp ATCCCTGTGGGCTATGGGGAGACAGAAGCCAGGGGCCTTAAACAGAGGGTCTGTGCATTCTCTCCTGCCTaGCTCTTCAGGGCTGTGTAT +
Preference number: 4 (lower is better)
Translates to: IPVGYGETEARGLKQRVCAFSPA*LFRAVY
Trigger: ATACACAGCCCTGAAGAGCCAGGCAGGAGAGAATGC...ACAGACCCTCTGTTTAAGGCCCCTGGCTTCTGTCTCCCCATAGCCCACAGGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp GTACGACGGCAATGTTTGTGGAGCACCTCTCTGTTCTGGAAACTTCTCTTCCTGCTGGAGCTCCTGTGCTaGGCTGAGTGGCAGTGCTCG +
Preference number: 4 (lower is better)
Translates to: VRRQCLWSTSLFWKLLFLLELLC*AEWQCS
Trigger: CGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAG...CAGGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp AAGGAAGCTTGGCAGCTGGGAAGAGTGGACTTAGAGGCTCCCGGGGGCCCAGGTTTGGTAGCACAGAGTTaGCTCAACGTGGCAATTGAA +
Preference number: 4 (lower is better)
Translates to: KEAWQLGRVDLEAPGGPGLVAQS*LNVAIE
Trigger: TTCAATTGCCACGTTGAGCCAACTCTGTGCTACCAA...ACCTGGGCCCCCGGGAGCCTCTAAGTCCACTCTTCCCAGCTGCCAAGCTTCCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CAA 72 bp TGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTaGGGTGCTCTTACCACTGAGCCATCTCACCAGCCC +
Preference number: 4 (lower is better)
Translates to: CWDLNSGPSEEQ*GALTTEPSHQP
Trigger: GGGCTGGTGAGATGGCTCAGTGGTAAGAGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR TCA 90 bp CTTGATGCTCCAGCATCTCTCCATGGGCAGTGGGAGAGGCAAAAGAAGCCAGGAGTTGGTCCTTGGTGTTaGGTGAGGAGCTCCAGAACT +
Preference number: 4 (lower is better)
Translates to: LDAPASLHGQWERQKKPGVGPWC*VRSSRT
Trigger: AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAAC...TCCTGGCTTCTTTTGCCTCTCCCACTGCCCATGGAGAGATGCTGGAGCATCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp GGGTACGACGGCAATGTTTGTGGAGCACCTCTCTGTTCTGGAAACTTCTCTTCCCACCTGCCTCTCTGGTaGCAGCAGAGAGCAGAAAGC +
Preference number: 4 (lower is better)
Translates to: GYDGNVCGAPLCSGNFSSHLPLW*QQRAES
Trigger: GCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTG...GGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp TCTTGGGAATTACCTAACCTGTACTGCCGTGGGGCCCACAGCTACACCATTCCTACCTGCATTCTCTCCTaGCTGGCTCTTCAGGGCTGT +
Preference number: 4 (lower is better)
Translates to: SWELPNLYCRGAHSYTIPTCILS*LALQGC
Trigger: ACAGCCCTGAAGAGCCAGGCAGGAGAGAATGCAGGT...AGGAATGGTGTAGCTGTGGGCCCCACGGCAGTACAGGTTAGGTAATTCCCAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp TGGGTGGGTGGTAAAGGAAGCTTGGCAGCTGGGAAGAGTGGACTTAGAGGCTCCCTTCGATATAGTGGCTaGAGACAAAAGAGGGGCCAC +
Preference number: 4 (lower is better)
Translates to: WVGGKGSLAAGKSGLRGSLRYSG*RQKRGH
Trigger: GTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAG...GGAGCCTCTAAGTCCACTCTTCCCAGCTGCCAAGCTTCCTTTACCACCCACCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp CTGCCGTGGGGCCCACAGCTACACCATTCCTCATTATCAAGCTTTAGTAAGGACAGCTGCACCAGGTCCTaGAACATGAGCTCTGAGCCC +
Preference number: 4 (lower is better)
Translates to: LPWGPQLHHSSLSSFSKDSCTRS*NMSSEP
Trigger: GGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCT...GTCCTTACTAAAGCTTGATAATGAGGAATGGTGTAGCTGTGGGCCCCACGGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp GGGTACGACGGCAATGTTTGTGGAGCACCTCTCTGTTCTGGAAACTTCTCTTCCTGGCTGCCTGATGAATaGCTCTGGGGAGTCGGAGAG +
Preference number: 4 (lower is better)
Translates to: GYDGNVCGAPLCSGNFSSWLPDE*LWGVGE
Trigger: CTCTCCGACTCCCCAGAGCCATTCATCAGGCAGCCA...GGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025818.8
CDS-3UTR CCA 90 bp ACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCCCAGCTCTTTGTGGGTaGCTGCCTGATGAATGGCTC +
Preference number: 4 (lower is better)
Translates to: TMWLLGFELWTFGRAVGCPALCG*LPDEWL
Trigger: GAGCCATTCATCAGGCAGCCACCCACAAAGAGCTGG...GCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp ATTTCTGATCGTGAGAAAAGACTGGAACATAGATGCTTTCTCTCCTACGGCCTGGCTCTGCGCTCAGCATaGCCCGGGCCCGACTTAGGG +
Preference number: 4 (lower is better)
Translates to: ISDREKRLEHRCFLSYGLALRSA*PGPDLG
Trigger: CCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGC...CAGGCCGTAGGAGAGAAAGCATCTATGTTCCAGTCTTTTCTCACGATCAGAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp TATGGGGAGACAGAAGCCAGGGGCCTTAAACAGAGGGTCTGTGAGTCTCCCAGCCTGTTCTGTCTCCACTaGGGAAGAAAGAGTCAGGTG +
Preference number: 4 (lower is better)
Translates to: YGETEARGLKQRVCESPSLFCLH*GRKSQV
Trigger: CACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAG...GCTGGGAGACTCACAGACCCTCTGTTTAAGGCCCCTGGCTTCTGTCTCCCCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp TCTTGGGAATTACCTAACCTGTACTGCCGTGGGGCCCACAGCTACACCATTCCTTCAGGAAGGTCGCACTaGGCCAAAACAAGGCTCAGC +
Preference number: 4 (lower is better)
Translates to: SWELPNLYCRGAHSYTIPSGRSH*AKTRLS
Trigger: GCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGA...AGGAATGGTGTAGCTGTGGGCCCCACGGCAGTACAGGTTAGGTAATTCCCAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp GTACGACGGCAATGTTTGTGGAGCACCTCTCTGTTCTGGAAACTTCTCTTCCTGCCATGCTCCTGCCTCTaGCCCCTTGCTGCCTGTCTT +
Preference number: 4 (lower is better)
Translates to: VRRQCLWSTSLFWKLLFLPCSCL*PLAACL
Trigger: AAGACAGGCAGCAAGGGGCCAGAGGCAGGAGCATGG...CAGGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CAA 72 bp AGTCTACCTCCTGTTGGTATGTGCATCACATCTAAGTaGGTGCCCTGGTACTCAGAGGCCCAGGAGAGCAGC +
Preference number: 4 (lower is better)
Translates to: SLPPVGMCITSK*VPWYSEAQESS
Trigger: GCTGCTCTCCTGGGCCTCTGAGTACCAGGGCACCAACTTAGATGTGATGCACATACCAACAGGAGGTAGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR TCA 90 bp CCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTGTCCTTGGTGTTGAGTaGGGAGCTCCAGAACTCCAT +
Preference number: 4 (lower is better)
Translates to: PCGCWDLNSGPSEEQLGAVLGVE*GAPELH
Trigger: ATGGAGTTCTGGAGCTCCTCACTCAACACCAAGGAC...AGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp GGGTACGACGGCAATGTTTGTGGAGCACCTCTCTGTTCTGGAAACTTCTCTTCCAGCTCCAGAACTCCATaGCCAGATGGGAGATGGCCT +
Preference number: 4 (lower is better)
Translates to: GYDGNVCGAPLCSGNFSSSSRTP*PDGRWP
Trigger: AGGCCATCTCCCATCTGGGCATGGAGTTCTGGAGCT...GGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp GGGTACGACGGCAATGTTTGTGGAGCACCTCTCTGTTCTGGAAACTTCTCTTCCCTGTGTATAGCAGCTTaGAGGCCTGCAGGAGCCACT +
Preference number: 4 (lower is better)
Translates to: GYDGNVCGAPLCSGNFSSLCIAA*RPAGAT
Trigger: AGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAG...GGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp TCTTGGGAATTACCTAACCTGTACTGCCGTGGGGCCCACAGCTACACCATTCCTGAACTCATCAGCACCTaGATTCTCTCCTGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: SWELPNLYCRGAHSYTIPELIST*ILSCLA
Trigger: AGCCAGGCAGGAGAGAATGCAGGTGCTGATGAGTTC...AGGAATGGTGTAGCTGTGGGCCCCACGGCAGTACAGGTTAGGTAATTCCCAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp GGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTCTTACCGTACAAAGTTCAGGTTaGTGGCTCCCAGAGGGTGTG +
Preference number: 4 (lower is better)
Translates to: GCWDLNSGPSEEQLGALTVQSSG*WLPEGV
Trigger: CACACCCTCTGGGAGCCACCAACCTGAACTTTGTAC...GGTAAGAGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp AAGAATGTCCCTGGTACGGCAGTATCCACAGATGAGCTGCACCAGGTCCTGGAAGTACAAAGTTCAGGTTaGTGGCTCCCAGAGGGTGTG +
Preference number: 4 (lower is better)
Translates to: KNVPGTAVSTDELHQVLEVQSSG*WLPEGV
Trigger: CACACCCTCTGGGAGCCACCAACCTGAACTTTGTAC...TTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAGGGACATTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224288.2
ENSMUST00000237762.2
CDS-3UTR CCA 90 bp CTGCCGTGGGGCCCACAGCTACACCATTCCTCATTATCAAGCTTTAGTAAGGACCACAGAGCCTGGCACTaGCGAGTGTTAGATTTCCGC +
Preference number: 4 (lower is better)
Translates to: LPWGPQLHHSSLSSFSKDHRAWH*RVLDFR
Trigger: GCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTG...GTCCTTACTAAAGCTTGATAATGAGGAATGGTGTAGCTGTGGGCCCCACGGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp GTACGACGGCAATGTTTGTGGAGCACCTCTCTGTTCTGGAAACTTCTCTTCCTGTGCCCAGATGGGAGATaGCCTCCAGCTCTTTGTGGG +
Preference number: 4 (lower is better)
Translates to: VRRQCLWSTSLFWKLLFLCPDGR*PPALCG
Trigger: CCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCA...CAGGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp AGGTGGACTTATGAAGATCGGCCAGAGGTGGTGGCAGACACCACAGAGAACTGTTCCGAAGGCCTCTGTTaGTCCTTGGTGTTGAGTGAG +
Preference number: 4 (lower is better)
Translates to: RWTYEDRPEVVADTTENCSEGLC*SLVLSE
Trigger: CTCACTCAACACCAAGGACCAACAGAGGCCTTCGGA...ACAGTTCTCTGTGGTGTCTGCCACCACCTCTGGCCGATCTTCATAAGTCCACCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp CCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTGGCAGTCTTTCCGTTTaGCTGGAAGATGTCCCTGGA +
Preference number: 4 (lower is better)
Translates to: PCGCWDLNSGPSEEQLGAGSLSV*LEDVPG
Trigger: TCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCC...AGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp AGAGGCTGCCTACGGGACAGGCTTGCCATAGCTGCTAACACTCATTCTTTCTTCAGAAAGCAGAACTCATaGACCGAAGCAGAGGCCGCC +
Preference number: 4 (lower is better)
Translates to: RGCLRDRLAIAANTHSFFRKQNS*TEAEAA
Trigger: GGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCT...GAAGAAAGAATGAGTGTTAGCAGCTATGGCAAGCCTGTCCCGTAGGCAGCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp ATTTCTGATCGTGAGAAAAGACTGGAACATAGATGCTTTCTCTCCTACGGCCTGGCCCGACTTAGGGCCTaGCGGATGCCCTGCAACTCC +
Preference number: 4 (lower is better)
Translates to: ISDREKRLEHRCFLSYGLARLRA*RMPCNS
Trigger: GGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGC...CAGGCCGTAGGAGAGAAAGCATCTATGTTCCAGTCTTTTCTCACGATCAGAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp CTTCTAAGAATCTCTGACTATAAGGGGTCTCTGCTCTGCATGTCCCAAGCTGCTGGCTGGCTGAGAGGCTaGTCAGGTAGTAGCCACCCT +
Preference number: 4 (lower is better)
Translates to: LLRISDYKGSLLCMSQAAGWLRG*SGSSHP
Trigger: AGGGTGGCTACTACCTGACCAGCCTCTCAGCCAGCC...AGCAGCTTGGGACATGCAGAGCAGAGACCCCTTATAGTCAGAGATTCTTAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp TCAGATCTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACGCACAGCCAGGGTCTTaGAGGTGCAACCTGTGCTGG +
Preference number: 4 (lower is better)
Translates to: SDLVTDGCEPPCGCWDLNAQPGS*RCNLCW
Trigger: CCAGCACAGGTTGCACCTCCAAGACCCTGGCTGTGC...GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAGATCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp ATCCCTGTGGGCTATGGGGAGACAGAAGCCAGGGGCCTTAAACAGAGGGTCTGTTGCCTTTTGTTCCTCTaGTCCTATGTGACCTCCTCT +
Preference number: 4 (lower is better)
Translates to: IPVGYGETEARGLKQRVCCLLFL*SYVTSS
Trigger: AGAGGAGGTCACATAGGACCAGAGGAACAAAAGGCA...ACAGACCCTCTGTTTAAGGCCCCTGGCTTCTGTCTCCCCATAGCCCACAGGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CAA 72 bp ACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCT +
Preference number: 4 (lower is better)
Translates to: TDGCEPPCGCWD*NSGPSEEQLGA
Trigger: AGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CAA 72 bp GCAGCTTCTCGGGCTGTATGCGCCCTCTTGTGGCTTTaGGTGGGTATTTTTCTCTGCTCAGATTTGCAGTGG +
Preference number: 4 (lower is better)
Translates to: AASRAVCALLWL*VGIFLCSDLQW
Trigger: CCACTGCAAATCTGAGCAGAGAAAAATACCCACCAAAAGCCACAAGAGGGCGCATACAGCCCGAGAAGCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR TCA 90 bp CTGTATGCGCCCTCTTGTGGCTTTTGGTGGGTATTTTTCTCTGCTCAGATTTGCGGCAGTATCCACAGATaGGCTGCACCAGGTCCTGGA +
Preference number: 4 (lower is better)
Translates to: LYAPSCGFWWVFFSAQICGSIHR*AAPGPG
Trigger: TCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCC...GCAAATCTGAGCAGAGAAAAATACCCACCAAAAGCCACAAGAGGGCGCATACAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp CAGCCGCACACACAGAGCCTGGCACTGGCGAGTGTTAGATTTCCGCACCAGGAATTTTCTTTCTGTTGGTaGCCAGGTACAAAGTTCAGG +
Preference number: 4 (lower is better)
Translates to: QPHTQSLALASVRFPHQEFSFCW*PGTKFR
Trigger: CCTGAACTTTGTACCTGGGCACCAACAGAAAGAAAA...TTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237762.2
CDS-3UTR GCA 90 bp CCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTTATCCACAGATGAGCTaGACCAGGTCCTGGAACATG +
Preference number: 4 (lower is better)
Translates to: PCGCWDLNSGPSEEQLGAYPQMS*TRSWNM
Trigger: CATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATA...AGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp AGAGGCTGCCTACGGGACAGGCTTGCCATAGCTGCTAACACTCATTCTTTCTTCGAACTCATCAGCACCTaGATTCTCTCCTGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: RGCLRDRLAIAANTHSFFELIST*ILSCLA
Trigger: AGCCAGGCAGGAGAGAATGCAGGTGCTGATGAGTTC...GAAGAAAGAATGAGTGTTAGCAGCTATGGCAAGCCTGTCCCGTAGGCAGCCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp TCTTGGGAATTACCTAACCTGTACTGCCGTGGGGCCCACAGCTACACCATTCCTCTCTGGCCTGATCCTTaGCTTCTTGGTCAACAGCTA +
Preference number: 4 (lower is better)
Translates to: SWELPNLYCRGAHSYTIPLWPDP*LLGQQL
Trigger: TAGCTGTTGACCAAGAAGGCAAGGATCAGGCCAGAG...AGGAATGGTGTAGCTGTGGGCCCCACGGCAGTACAGGTTAGGTAATTCCCAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp CCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTCTCTGGCCTGATCCTTaGCTTCTTGGTCAACAGCTA +
Preference number: 4 (lower is better)
Translates to: PCGCWDLNSGPSEEQLGALWPDP*LLGQQL
Trigger: TAGCTGTTGACCAAGAAGGCAAGGATCAGGCCAGAG...AGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp ACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCCTTCGATATAGTGGCTaGAGACAAAAGAGGGGCCAC +
Preference number: 4 (lower is better)
Translates to: TMWLLGFELWTFGRAVGCLRYSG*RQKRGH
Trigger: GTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAG...GCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp AGGTGGACTTATGAAGATCGGCCAGAGGTGGTGGCAGACACCACAGAGAACTGTGTCTTTCCGTTTGGCTaGAAGATGTCCCTGGAAGCA +
Preference number: 4 (lower is better)
Translates to: RWTYEDRPEVVADTTENCVFPFG*KMSLEA
Trigger: TGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGAC...ACAGTTCTCTGTGGTGTCTGCCACCACCTCTGGCCGATCTTCATAAGTCCACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp ACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCCTGTTCTGTCTCCACTaGGGAAGAAAGAGTCAGGTG +
Preference number: 4 (lower is better)
Translates to: TMWLLGFELWTFGRAVGCLFCLH*GRKSQV
Trigger: CACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAG...GCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp TCAGATCTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACAGCTGCAGCAGCTTCTaGCGCACCTGTTCTGTCTCC +
Preference number: 4 (lower is better)
Translates to: SDLVTDGCEPPCGCWDLNSCSSF*RTCSVS
Trigger: GGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCT...GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAGATCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR TCA 90 bp ATTTCTGATCGTGAGAAAAGACTGGAACATAGATGCTTTCTCTCCTACGGCCTGAGGTCCTGCACTAGCTaGCCCACGGCTGTGTATCGG +
Preference number: 4 (lower is better)
Translates to: ISDREKRLEHRCFLSYGLRSCTS*PTAVYR
Trigger: CCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCT...CAGGCCGTAGGAGAGAAAGCATCTATGTTCCAGTCTTTTCTCACGATCAGAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp CTTCTAAGAATCTCTGACTATAAGGGGTCTCTGCTCTGCATGTCCCAAGCTGCTCCTCTGGCCCCTTGCTaGCTGTCTTTGCCTTTTCTG +
Preference number: 4 (lower is better)
Translates to: LLRISDYKGSLLCMSQAAPLAPC*LSLPFL
Trigger: CAGAAAAGGCAAAGACAGGCAGCAAGGGGCCAGAGG...AGCAGCTTGGGACATGCAGAGCAGAGACCCCTTATAGTCAGAGATTCTTAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp CAAAAGAAGCCAGGACTACCCTCCCACCACGCCCCTATGGCTATCAGGAGGATTAGGTGTGTCATACAGTaGGTCTGTAGATGGCTTTTC +
Preference number: 4 (lower is better)
Translates to: QKKPGLPSHHAPMAIRRIRCVIQ*VCRWLF
Trigger: GAAAAGCCATCTACAGACCCACTGTATGACACACCT...AATCCTCCTGATAGCCATAGGGGCGTGGTGGGAGGGTAGTCCTGGCTTCTTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp CTTCTAAGAATCTCTGACTATAAGGGGTCTCTGCTCTGCATGTCCCAAGCTGCTCCAGCTCTTTGTGGGTaGCTGCCTGATGAATGGCTC +
Preference number: 4 (lower is better)
Translates to: LLRISDYKGSLLCMSQAAPALCG*LPDEWL
Trigger: GAGCCATTCATCAGGCAGCCACCCACAAAGAGCTGG...AGCAGCTTGGGACATGCAGAGCAGAGACCCCTTATAGTCAGAGATTCTTAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp CTTCTAAGAATCTCTGACTATAAGGGGTCTCTGCTCTGCATGTCCCAAGCTGCTTCAGGAAGGTCGCACTaGGCCAAAACAAGGCTCAGC +
Preference number: 4 (lower is better)
Translates to: LLRISDYKGSLLCMSQAASGRSH*AKTRLS
Trigger: GCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGA...AGCAGCTTGGGACATGCAGAGCAGAGACCCCTTATAGTCAGAGATTCTTAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp ATTTCTGATCGTGAGAAAAGACTGGAACATAGATGCTTTCTCTCCTACGGCCTGGGCAGTGCTCGGGCCTaGCTTAGGCCACTCAACAAG +
Preference number: 4 (lower is better)
Translates to: ISDREKRLEHRCFLSYGLGSARA*LRPLNK
Trigger: CTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCC...CAGGCCGTAGGAGAGAAAGCATCTATGTTCCAGTCTTTTCTCACGATCAGAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp TCTTGGGAATTACCTAACCTGTACTGCCGTGGGGCCCACAGCTACACCATTCCTTGCCTTTTGTTCCTCTaGTCCTATGTGACCTCCTCT +
Preference number: 4 (lower is better)
Translates to: SWELPNLYCRGAHSYTIPCLLFL*SYVTSS
Trigger: AGAGGAGGTCACATAGGACCAGAGGAACAAAAGGCA...AGGAATGGTGTAGCTGTGGGCCCCACGGCAGTACAGGTTAGGTAATTCCCAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CAA 72 bp AGTAAGGACCCAAGGAGTGGGGTACGACGGCAATGTTaGTGGAGCACCTCTCTGTTCTGGAAACTTCTCTTC +
Preference number: 4 (lower is better)
Translates to: SKDPRSGVRRQC*WSTSLFWKLLF
Trigger: GAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTACCCCACTCCTTGGGTCCTTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
3UTR CAA 72 bp CCACCCTCCCCACCAGATGTTAGATATCAGATGAACTaGTCCCTTATCACACACTTTTCCCTCCTGCGGAGG +
Preference number: 4 (lower is better)
Translates to: PPSPPDVRYQMN*SLITHFSLLRR
Trigger: CCTCCGCAGGAGGGAAAAGTGTGTGATAAGGGACAAGTTCATCTGATATCTAACATCTGGTGGGGAGGGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp TGGTCCTTGGTGTTGAGTGAGGAGCTCCAGAACTCCATGCCCAGATGGGAGATGTTTTCTTTCTGTTGGTaGCCAGGTACAAAGTTCAGG +
Preference number: 4 (lower is better)
Translates to: WSLVLSEELQNSMPRWEMFSFCW*PGTKFR
Trigger: CCTGAACTTTGTACCTGGGCACCAACAGAAAGAAAA...CATCTCCCATCTGGGCATGGAGTTCTGGAGCTCCTCACTCAACACCAAGGACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224288.2
CDS-3UTR GCA 90 bp CTGTATGCGCCCTCTTGTGGCTTTTGGTGGGTATTTTTCTCTGCTCAGATTTGCTGTCTTTGCCTTTTCTaGTACAGCCCCCTGGGTCTC +
Preference number: 4 (lower is better)
Translates to: LYAPSCGFWWVFFSAQICCLCLF*YSPLGL
Trigger: GAGACCCAGGGGGCTGTAGCAGAAAAGGCAAAGACA...GCAAATCTGAGCAGAGAAAAATACCCACCAAAAGCCACAAGAGGGCGCATACAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp AGGTGGACTTATGAAGATCGGCCAGAGGTGGTGGCAGACACCACAGAGAACTGTCAGTGGGTCTGTAGATaGCTTTTCTTTCTGTTGGTG +
Preference number: 4 (lower is better)
Translates to: RWTYEDRPEVVADTTENCQWVCR*LFFLLV
Trigger: CACCAACAGAAAGAAAAGCCATCTACAGACCCACTG...ACAGTTCTCTGTGGTGTCTGCCACCACCTCTGGCCGATCTTCATAAGTCCACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp AGGTGGACTTATGAAGATCGGCCAGAGGTGGTGGCAGACACCACAGAGAACTGTAGGTGTGTCATACAGTaGGTCTGTAGATGGCTTTTC +
Preference number: 4 (lower is better)
Translates to: RWTYEDRPEVVADTTENCRCVIQ*VCRWLF
Trigger: GAAAAGCCATCTACAGACCCACTGTATGACACACCT...ACAGTTCTCTGTGGTGTCTGCCACCACCTCTGGCCGATCTTCATAAGTCCACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp AGGTGGACTTATGAAGATCGGCCAGAGGTGGTGGCAGACACCACAGAGAACTGTTTGGTAGCACAGAGTTaGCTCAACGTGGCAATTGAA +
Preference number: 4 (lower is better)
Translates to: RWTYEDRPEVVADTTENCLVAQS*LNVAIE
Trigger: TTCAATTGCCACGTTGAGCCAACTCTGTGCTACCAA...ACAGTTCTCTGTGGTGTCTGCCACCACCTCTGGCCGATCTTCATAAGTCCACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp AGGAGAAGAATGTCCCTGGTACGGCAGTATCCACAGATGAGCTGCACCAGGTCCCAGTTTTCTTTCTGTTaGTGCCCAGGTACAAAGTTC +
Preference number: 4 (lower is better)
Translates to: RRRMSLVRQYPQMSCTRSQFSFC*CPGTKF
Trigger: GAACTTTGTACCTGGGCACCAACAGAAAGAAAACTG...GGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAGGGACATTCTTCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224288.2
ENSMUST00000237762.2
CDS-3UTR CCA 90 bp GCTCTGAGCCCTCCAAAGAGACACCGCCAGTACTCTCTTCGATATAGTGGCTGGCAGTTTTCTTTCTGTTaGTGCCCAGGTACAAAGTTC +
Preference number: 4 (lower is better)
Translates to: ALSPPKRHRQYSLRYSGWQFSFC*CPGTKF
Trigger: GAACTTTGTACCTGGGCACCAACAGAAAGAAAACTG...CCAGCCACTATATCGAAGAGAGTACTGGCGGTGTCTCTTTGGAGGGCTCAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237762.2
CDS-3UTR GCA 90 bp AGAGGCTGCCTACGGGACAGGCTTGCCATAGCTGCTAACACTCATTCTTTCTTCTTTTCTTTCTGTTGGTaGCCAGGTACAAAGTTCAGG +
Preference number: 4 (lower is better)
Translates to: RGCLRDRLAIAANTHSFFFSFCW*PGTKFR
Trigger: CCTGAACTTTGTACCTGGGCACCAACAGAAAGAAAA...GAAGAAAGAATGAGTGTTAGCAGCTATGGCAAGCCTGTCCCGTAGGCAGCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp ATTTCTGATCGTGAGAAAAGACTGGAACATAGATGCTTTCTCTCCTACGGCCTGTCCGAAGGCCTCTGTTaGTCCTTGGTGTTGAGTGAG +
Preference number: 4 (lower is better)
Translates to: ISDREKRLEHRCFLSYGLSEGLC*SLVLSE
Trigger: CTCACTCAACACCAAGGACCAACAGAGGCCTTCGGA...CAGGCCGTAGGAGAGAAAGCATCTATGTTCCAGTCTTTTCTCACGATCAGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CCA 90 bp ATTTCTGATCGTGAGAAAAGACTGGAACATAGATGCTTTCTCTCCTACGGCCTGGGCAGTCTTTCCGTTTaGCTGGAAGATGTCCCTGGA +
Preference number: 4 (lower is better)
Translates to: ISDREKRLEHRCFLSYGLGSLSV*LEDVPG
Trigger: TCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCC...CAGGCCGTAGGAGAGAAAGCATCTATGTTCCAGTCTTTTCTCACGATCAGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR GCA 90 bp CTGTATGCGCCCTCTTGTGGCTTTTGGTGGGTATTTTTCTCTGCTCAGATTTGCTTTTCTTTCTGTTGGTaGCCAGGTACAAAGTTCAGG +
Preference number: 4 (lower is better)
Translates to: LYAPSCGFWWVFFSAQICFSFCW*PGTKFR
Trigger: CCTGAACTTTGTACCTGGGCACCAACAGAAAGAAAA...GCAAATCTGAGCAGAGAAAAATACCCACCAAAAGCCACAAGAGGGCGCATACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 90 bp GGGCCCAGCTCTGCGCTCAGCATGGCCCGGGCCCGACTTAGGGCCTaGCGGATGCCCTGCAACTCCCGGGGCTCGGGACCAGCCCGAACC +
Preference number: 5 (lower is better)
Translates to: GPSSALSMARARLRA*RMPCNSRGSGPART
Trigger: GGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS GCA 90 bp GCGCTCAGCATGGCCCGGGCCCGACTTAGGGCCTGGCGGATGCCCTaGAACTCCCGGGGCTCGGGACCAGCCCGAACCTGGGTCAGTAGG +
Preference number: 5 (lower is better)
Translates to: ALSMARARLRAWRMP*NSRGSGPARTWVSR
Trigger: CCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS GCA 90 bp GCTCTGCGCTCAGCATGGCCCGGGCCCGACTTAGGGCCTGGCGGATaGCCTGCAACTCCCGGGGCTCGGGACCAGCCCGAACCTGGGTCA +
Preference number: 5 (lower is better)
Translates to: ALRSAWPGPDLGPGG*PATPGARDQPEPGS
Trigger: TGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 90 bp GCTCTGGTGGTAGCAGCTTCTCAGGGCCCAGCTCTGCGCTCAGCATaGCCCGGGCCCGACTTAGGGCCTGGCGGATGCCCTGCAACTCCC +
Preference number: 5 (lower is better)
Translates to: ALVVAASQGPALRSA*PGPDLGPGGCPATP
Trigger: GGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS TCA 90 bp GCTGTTCCCAGAGGGCCAGGGAGCGCTGGAGCTCCTGTGCTGGGCTaGGTGGCAGTGCTCGGGCCTGGCTTAGGCCACTCAACAAGGCCA +
Preference number: 5 (lower is better)
Translates to: AVPRGPGSAGAPVLG*VAVLGPGLGHSTRP
Trigger: TGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025818.8
ENSMUST00000224032.2
ENSMUST00000225427.2
CDS TCA 90 bp CTGCTACAGCCCCCTGGGTCTCAGGGCGCTCTGCCCGGCGATAGATaGGGTAGCCAGTTGCAGGAAGCCTGTGGGCTAGGGCTTCAGGGG +
Preference number: 5 (lower is better)
Translates to: LLQPPGSQGALPGDR*GSQLQEACGLGLQG
Trigger: CCCCTGAAGCCCTAGCCCACAGGCTTCCTGCAACTGGCTACCTCATCTATCGCCGGGCAGAGCGCCCTGAGACCCAGGGGGCTGTAGCAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS GCA 90 bp CACAGGCCGGGTGATCAGCAGCCGCTCCCGAAGGCTCACAGTACGTaGTGGCTGTTGGGACCCGCCTGCCTGTACCCCTCTGGTATCAGG +
Preference number: 5 (lower is better)
Translates to: HRPGDQQPLPKAHST*WLLGPACLYPSGIR
Trigger: CCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 90 bp TTCTGGCGCACCTGTTCTGTCTCCACTGGGGAAGAAAGAGTCAGGTaGGACCCGAAGGCTCCAGGCCCCTGGGTCCGGGCCAGGCGGAAG +
Preference number: 5 (lower is better)
Translates to: FWRTCSVSTGEERVR*DPKAPGPWVRARRK
Trigger: CTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 90 bp AGGCCGGGTGATCAGCAGCCGCTCCCGAAGGCTCACAGTACGTGCTaGCTGTTGGGACCCGCCTGCCTGTACCCCTCTGGTATCAGGTGT +
Preference number: 5 (lower is better)
Translates to: RPGDQQPLPKAHSTC*LLGPACLYPSGIRC
Trigger: ACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 90 bp CAGCTGTCGAGGGGGCAGTCTTTCCGTTTGGCTGGAAGATGTCCCTaGAAGCACCGGGACTGGGGGAGGCGGCACAGCAGGTGGAGACAG +
Preference number: 5 (lower is better)
Translates to: QLSRGQSFRLAGRCP*KHRDWGRRHSRWRQ
Trigger: CTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 90 bp TCTCCCTCTGCAGCAGCTGTCGAGGGGGCAGTCTTTCCGTTTGGCTaGAAGATGTCCCTGGAAGCACCGGGACTGGGGGAGGCGGCACAG +
Preference number: 5 (lower is better)
Translates to: SPSAAAVEGAVFPFG*KMSLEAPGLGEAAQ
Trigger: CTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 90 bp AAGACCCTGGGGGCACAGCCAGGGTCTTGGAGGTGCAACCTGTGCTaGGGTCCTGGTAGGCTACTCGGAGGAGATGCTGGAAGCTGTGGG +
Preference number: 5 (lower is better)
Translates to: KTLGAQPGSWRCNLC*GPGRLLGGDAGSCG
Trigger: CCCACAGCTTCCAGCATCTCCTCCGAGTAGCCTACCAGGACCCCAGCACAGGTTGCACCTCCAAGACCCTGGCTGTGCCCCCAGGGTCTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 90 bp ACGAAGGAGCTGCAGCAGCTTCTGGCGCACCTGTTCTGTCTCCACTaGGGAAGAAAGAGTCAGGTGGGACCCGAAGGCTCCAGGCCCCTG +
Preference number: 5 (lower is better)
Translates to: TKELQQLLAHLFCLH*GRKSQVGPEGSRPL
Trigger: CAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025818.8
ENSMUST00000224032.2
ENSMUST00000225427.2
CDS CCA 90 bp GGCTCAACGTGGCAATTGAAGACCCTGGGGGCACAGCCAGGGTCTTaGAGGTGCAACCTGTGCTGGGGTCCTGGTAGGCTACTCGGAGGA +
Preference number: 5 (lower is better)
Translates to: GSTWQLKTLGAQPGS*RCNLCWGPGRLLGG
Trigger: TCCTCCGAGTAGCCTACCAGGACCCCAGCACAGGTTGCACCTCCAAGACCCTGGCTGTGCCCCCAGGGTCTTCAATTGCCACGTTGAGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp AGGCCCAGGAGAGCAGCTCTGAGCCTGGCTGTGGTCCTCCTTTGTCCGGAAACAGCCTGCAGGAGCCACTaGACCTGGGCACTAGGTGAG +
Preference number: 5 (lower is better)
Translates to: RPRRAALSLAVVLLCPETACRSH*TWALGE
Trigger: CTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGC...TGTTTCCGGACAAAGGAGGACCACAGCCAGGCTCAGAGCTGCTCTCCTGGGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS GCA 90 bp CCGCTCCCGAAGGCTCACAGTACGTGCTGGCTGTTGGGACCCGCCTaGCTGTACCCCTCTGGTATCAGGTGTGTCATACAGTGGGTCTGT +
Preference number: 5 (lower is better)
Translates to: PLPKAHSTCWLLGPA*LYPSGIRCVIQWVC
Trigger: ACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS GCA 90 bp AGAGAGCAGAAAGCAGAACTCATGGACCGAAGCAGAGGCCGCCGGTaGCTTGGGCGGCTTAGGCGTGGGGAGGTTGTAGGGCTTCCTGAA +
Preference number: 5 (lower is better)
Translates to: REQKAELMDRSRGRR*LGRLRRGEVVGLPE
Trigger: TTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS GCA 90 bp TTGAAGACCCTGGGGGCACAGCCAGGGTCTTGGAGGTGCAACCTGTaGTGGGGTCCTGGTAGGCTACTCGGAGGAGATGCTGGAAGCTGT +
Preference number: 5 (lower is better)
Translates to: LKTLGAQPGSWRCNL*WGPGRLLGGDAGSC
Trigger: ACAGCTTCCAGCATCTCCTCCGAGTAGCCTACCAGGACCCCAGCACAGGTTGCACCTCCAAGACCCTGGCTGTGCCCCCAGGGTCTTCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS GCA 90 bp ACGTGGCAATTGAAGACCCTGGGGGCACAGCCAGGGTCTTGGAGGTaGAACCTGTGCTGGGGTCCTGGTAGGCTACTCGGAGGAGATGCT +
Preference number: 5 (lower is better)
Translates to: TWQLKTLGAQPGSWR*NLCWGPGRLLGGDA
Trigger: AGCATCTCCTCCGAGTAGCCTACCAGGACCCCAGCACAGGTTGCACCTCCAAGACCCTGGCTGTGCCCCCAGGGTCTTCAATTGCCACGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS GCA 90 bp TGTCTTTGCCTTTTCTGCTACAGCCCCCTGGGTCTCAGGGCGCTCTaGCCGGCGATAGATGAGGTAGCCAGTTGCAGGAAGCCTGTGGGC +
Preference number: 5 (lower is better)
Translates to: CLCLFCYSPLGLRAL*PAIDEVASCRKPVG
Trigger: GCCCACAGGCTTCCTGCAACTGGCTACCTCATCTATCGCCGGGCAGAGCGCCCTGAGACCCAGGGGGCTGTAGCAGAAAAGGCAAAGACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 90 bp GTGATCAGCAGCCGCTCCCGAAGGCTCACAGTACGTGCTGGCTGTTaGGACCCGCCTGCCTGTACCCCTCTGGTATCAGGTGTGTCATAC +
Preference number: 5 (lower is better)
Translates to: VISSRSRRLTVRAGC*DPPACTPLVSGVSY
Trigger: GTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 90 bp GGTGACGTCAGAGTCCCTCTGAGCATGGTCAATAGGGGAAAGATGTaGGGACCGGCTCTTTACCTGGAAGCTGTGGGTGGCCGGCAGGCG +
Preference number: 5 (lower is better)
Translates to: GDVRVPLSMVNRGKM*GPALYLEAVGGRQA
Trigger: CGCCTGCCGGCCACCCACAGCTTCCAGGTAAAGAGCCGGTCCCCACATCTTTCCCCTATTGACCATGCTCAGAGGGACTCTGACGTCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224032.2
CDS-3UTR CAA 90 bp AGGCCCAGGAGAGCAGCTCTGAGCCTGGCTGTGGTCCTCCTTTGTCCGGAAACAGCTGTGTATAGCAGCTaGCAGGCCTGCAGGAGCCAC +
Preference number: 5 (lower is better)
Translates to: RPRRAALSLAVVLLCPETAVYSS*QACRSH
Trigger: GTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGC...TGTTTCCGGACAAAGGAGGACCACAGCCAGGCTCAGAGCTGCTCTCCTGGGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS TCA 90 bp AGGAAGACAAGGGCTGGCAGCACTTCCTGGCACACGATATCCCACTaGGCTCTCCCTCTGCAGCAGCTGTCGAGGGGGCAGTCTTTCCGT +
Preference number: 5 (lower is better)
Translates to: RKTRAGSTSWHTISH*ALPLQQLSRGQSFR
Trigger: ACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS TCA 90 bp GGCTCGGGACCAGCCCGAACCTGGGTCAGTAGGTCCTGCACTAGCTaGCCCACGGCTGTGTATCGGTTTTGCATTAGCATTGTGGCTGCC +
Preference number: 5 (lower is better)
Translates to: GSGPARTWVSRSCTS*PTAVYRFCISIVAA
Trigger: GGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS GCA 90 bp AGGCGGGCAGCCAGAATGGGTCGAAGAGGCTTGAGAACAGAGCGATaGAGGGACTTCTCCAGGACCAATTCCAGCCGCTCTGGTGGTAGC +
Preference number: 5 (lower is better)
Translates to: RRAARMGRRGLRTER*RDFSRTNSSRSGGS
Trigger: GCTACCACCAGAGCGGCTGGAATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp TATGGGGAGACAGAAGCCAGGGGCCTTAAACAGAGGGTCTGTGAGTCTCCCAGCGCCTGCAGGAGCCACTaGACCTGGGCACTAGGTGAG +
Preference number: 5 (lower is better)
Translates to: YGETEARGLKQRVCESPSACRSH*TWALGE
Trigger: CTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGC...GCTGGGAGACTCACAGACCCTCTGTTTAAGGCCCCTGGCTTCTGTCTCCCCATA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS GCA 90 bp CTGGCAGCACTTCCTGGCACACGATATCCCACTGAGCTCTCCCTCTaGAGCAGCTGTCGAGGGGGCAGTCTTTCCGTTTGGCTGGAAGAT +
Preference number: 5 (lower is better)
Translates to: LAALPGTRYPTELSL*SSCRGGSLSVWLED
Trigger: ATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp ATCCCTGTGGGCTATGGGGAGACAGAAGCCAGGGGCCTTAAACAGAGGGTCTGTCCTGCCTCTGGCCCCTaGCTGCCTGTCTTTGCCTTT +
Preference number: 5 (lower is better)
Translates to: IPVGYGETEARGLKQRVCPASGP*LPVFAF
Trigger: AAAGGCAAAGACAGGCAGCAAGGGGCCAGAGGCAGG...ACAGACCCTCTGTTTAAGGCCCCTGGCTTCTGTCTCCCCATAGCCCACAGGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS TCA 90 bp GGTCACTCGGAACTTGGTAGCACAGAGTTGGCTCAACGTGGCAATTaGAGACCCTGGGGGCACAGCCAGGGTCTTGGAGGTGCAACCTGT +
Preference number: 5 (lower is better)
Translates to: GHSELGSTELAQRGN*RPWGHSQGLGGATC
Trigger: ACAGGTTGCACCTCCAAGACCCTGGCTGTGCCCCCAGGGTCTTCAATTGCCACGTTGAGCCAACTCTGTGCTACCAAGTTCCGAGTGACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS GCA 90 bp CTCCATGCCCAGATGGGAGATGGCCTCCAGCTCTTTGTGGGTGGCTaGCTGATGAATGGCTCTGGTACGGCAGTATCCACAGATGAGCTG +
Preference number: 5 (lower is better)
Translates to: LHAQMGDGLQLFVGG*LMNGSGTAVSTDEL
Trigger: CAGCTCATCTGTGGATACTGCCGTACCAGAGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000225427.2
ENSMUST00000225799.3
CDS CCA 90 bp CCAAACGCATCTGGTTGGGTCACTCGGAACTTGGTAGCACAGAGTTaGCTCAACGTGGCAATTGAAGACCCTGGGGGCACAGCCAGGGTC +
Preference number: 5 (lower is better)
Translates to: PNASGWVTRNLVAQS*LNVAIEDPGGTARV
Trigger: GACCCTGGCTGTGCCCCCAGGGTCTTCAATTGCCACGTTGAGCCAACTCTGTGCTACCAAGTTCCGAGTGACCCAACCAGATGCGTTTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp GGAGTTGCACAGGGTCTTGATGCTCCAGCATCTCTCCATGGGCAGTGGGAGAGGCCTTGCTGCCTGTCTTaGCCTTTTCTGCTACAGCCC +
Preference number: 5 (lower is better)
Translates to: GVAQGLDAPASLHGQWERPCCLS*PFLLQP
Trigger: GGGCTGTAGCAGAAAAGGCAAAGACAGGCAGCAAGG...CCTCTCCCACTGCCCATGGAGAGATGCTGGAGCATCAAGACCCTGTGCAACTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp GACCTTCGGAAGAGCAGTTGGGTGCTCTTACCACTGAGCCATCTCACCAGCCCCCCTTGCTGCCTGTCTTaGCCTTTTCTGCTACAGCCC +
Preference number: 5 (lower is better)
Translates to: DLRKSSWVLLPLSHLTSPPCCLS*PFLLQP
Trigger: GGGCTGTAGCAGAAAAGGCAAAGACAGGCAGCAAGG...GGGGCTGGTGAGATGGCTCAGTGGTAAGAGCACCCAACTGCTCTTCCGAAGGTC
58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp AGGCCCAGGAGAGCAGCTCTGAGCCTGGCTGTGGTCCTCCTTTGTCCGGAAACACTGATCCTTGCCTTCTaGGTCAACAGCTATCCGAGG +
Preference number: 5 (lower is better)
Translates to: RPRRAALSLAVVLLCPETLILAF*VNSYPR
Trigger: CCTCGGATAGCTGTTGACCAAGAAGGCAAGGATCAG...TGTTTCCGGACAAAGGAGGACCACAGCCAGGCTCAGAGCTGCTCTCCTGGGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp AAGGAAGCTTGGCAGCTGGGAAGAGTGGACTTAGAGGCTCCCGGGGGCCCAGGTGCTTCCTTCTGCCTTTaGTTCCTCTGGTCCTATGTG +
Preference number: 5 (lower is better)
Translates to: KEAWQLGRVDLEAPGGPGASFCL*FLWSYV
Trigger: CACATAGGACCAGAGGAACAAAAGGCAGAAGGAAGC...ACCTGGGCCCCCGGGAGCCTCTAAGTCCACTCTTCCCAGCTGCCAAGCTTCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS GCA 90 bp GCTGTGTATCGGTTTTGCATTAGCATTGTGGCTGCCCGGCCCACCTaGCTCTCTGGTGCCAGCAGAGAGCAGAAAGCAGAACTCATGGAC +
Preference number: 5 (lower is better)
Translates to: AVYRFCISIVAARPT*LSGASREQKAELMD
Trigger: GTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp TATGGGGAGACAGAAGCCAGGGGCCTTAAACAGAGGGTCTGTGAGTCTCCCAGCGGTACAAAGTTCAGGTaGGTGGCTCCCAGAGGGTGT +
Preference number: 5 (lower is better)
Translates to: YGETEARGLKQRVCESPSGTKFR*VAPRGC
Trigger: ACACCCTCTGGGAGCCACCAACCTGAACTTTGTACC...GCTGGGAGACTCACAGACCCTCTGTTTAAGGCCCCTGGCTTCTGTCTCCCCATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp GTCCCTGGTACGGCAGTATCCACAGATGAGCTGCACCAGGTCCTGGAACATGAGGGTACAAAGTTCAGGTaGGTGGCTCCCAGAGGGTGT +
Preference number: 5 (lower is better)
Translates to: VPGTAVSTDELHQVLEHEGTKFR*VAPRGC
Trigger: ACACCCTCTGGGAGCCACCAACCTGAACTTTGTACC...CTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAGGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224288.2
ENSMUST00000237762.2
CDS-3UTR CAA 90 bp TGGGTGGGTGGTAAAGGAAGCTTGGCAGCTGGGAAGAGTGGACTTAGAGGCTCCTTGAATTTCTCTCGTTaGGTGGGGCCCAGATCCCCG +
Preference number: 5 (lower is better)
Translates to: WVGGKGSLAAGKSGLRGSLNFSR*VGPRSP
Trigger: CGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAA...GGAGCCTCTAAGTCCACTCTTCCCAGCTGCCAAGCTTCCTTTACCACCCACCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 90 bp GCGATGGTAGCCCTGGTCCTTGTAGAGGAAGAGGCCAAACGCATCTaGTTGGGTCACTCGGAACTTGGTAGCACAGAGTTGGCTCAACGT +
Preference number: 5 (lower is better)
Translates to: AMVALVLVEEEAKRI*LGHSELGSTELAQR
Trigger: ACGTTGAGCCAACTCTGTGCTACCAAGTTCCGAGTGACCCAACCAGATGCGTTTGGCCTCTTCCTCTACAAGGACCAGGGCTACCATCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp CTTGATGCTCCAGCATCTCTCCATGGGCAGTGGGAGAGGCAAAAGAAGCCAGGATTGAATTTCTCTCGTTaGGTGGGGCCCAGATCCCCG +
Preference number: 5 (lower is better)
Translates to: LDAPASLHGQWERQKKPGLNFSR*VGPRSP
Trigger: CGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAA...TCCTGGCTTCTTTTGCCTCTCCCACTGCCCATGGAGAGATGCTGGAGCATCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp CTTGATGCTCCAGCATCTCTCCATGGGCAGTGGGAGAGGCAAAAGAAGCCAGGATGGGTCACTCGGAACTaGGTAGCACAGAGTTGGCTC +
Preference number: 5 (lower is better)
Translates to: LDAPASLHGQWERQKKPGWVTRN*VAQSWL
Trigger: GAGCCAACTCTGTGCTACCAAGTTCCGAGTGACCCA...TCCTGGCTTCTTTTGCCTCTCCCACTGCCCATGGAGAGATGCTGGAGCATCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp CAAAAGAAGCCAGGACTACCCTCCCACCACGCCCCTATGGCTATCAGGAGGATTGCCAAACGCATCTGGTaGGGTCACTCGGAACTTGGT +
Preference number: 5 (lower is better)
Translates to: QKKPGLPSHHAPMAIRRIAKRIW*GHSELG
Trigger: ACCAAGTTCCGAGTGACCCAACCAGATGCGTTTGGC...AATCCTCCTGATAGCCATAGGGGCGTGGTGGGAGGGTAGTCCTGGCTTCTTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp CTGCCGTGGGGCCCACAGCTACACCATTCCTCATTATCAAGCTTTAGTAAGGACCCTGCCTCTGGCCCCTaGCTGCCTGTCTTTGCCTTT +
Preference number: 5 (lower is better)
Translates to: LPWGPQLHHSSLSSFSKDPASGP*LPVFAF
Trigger: AAAGGCAAAGACAGGCAGCAAGGGGCCAGAGGCAGG...GTCCTTACTAAAGCTTGATAATGAGGAATGGTGTAGCTGTGGGCCCCACGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS TCA 90 bp GATGCAAGGCTAGTGAAACTGTGCTGGGTGACGTCAGAGTCCCTCTaGGCATGGTCAATAGGGGAAAGATGTGGGGACCGGCTCTTTACC +
Preference number: 5 (lower is better)
Translates to: DARLVKLCWVTSESL*AWSIGERCGDRLFT
Trigger: GGTAAAGAGCCGGTCCCCACATCTTTCCCCTATTGACCATGCTCAGAGGGACTCTGACGTCACCCAGCACAGTTTCACTAGCCTTGCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224032.2
CDS-3UTR CAA 90 bp AAGAATGTCCCTGGTACGGCAGTATCCACAGATGAGCTGCACCAGGTCCTGGAAGGTACAAAGTTCAGGTaGGTGGCTCCCAGAGGGTGT +
Preference number: 5 (lower is better)
Translates to: KNVPGTAVSTDELHQVLEGTKFR*VAPRGC
Trigger: ACACCCTCTGGGAGCCACCAACCTGAACTTTGTACC...TTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAGGGACATTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000224288.2
ENSMUST00000237762.2
CDS-3UTR CAA 90 bp GGGTACGACGGCAATGTTTGTGGAGCACCTCTCTGTTCTGGAAACTTCTCTTCCGGTTTTGCATTAGCATaGTGGCTGCCCGGCCCACCT +
Preference number: 5 (lower is better)
Translates to: GYDGNVCGAPLCSGNFSSGFALA*WLPGPP
Trigger: AGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACC...GGAAGAGAAGTTTCCAGAACAGAGAGGTGCTCCACAAACATTGCCGTCGTACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 90 bp TCTGACATATACTCAGCTTCTAACAGGAGGTCAGGAAGGTCGCACTaGGCCAAAACAAGGCTCAGCAGAGGCAGGAACTCATCAGCACCT +
Preference number: 5 (lower is better)
Translates to: SDIYSASNRRSGRSH*AKTRLSRGRNSSAP
Trigger: AGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025818.8
ENSMUST00000224032.2
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp AGGAGAGCAGCTCTGAGCCTGGCTGTGGTCCTCCTTTGTCCGGAAACAATCCTCGTGGACACTCGCACTTaGAAACTCCTCTTGAATTTC +
Preference number: 5 (lower is better)
Translates to: RRAALSLAVVLLCPETILVDTRT*KLLLNF
Trigger: GAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCAC...GAGGATTGTTTCCGGACAAAGGAGGACCACAGCCAGGCTCAGAGCTGCTCTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp GGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTCTTACCGCTTCCTTCTGCCTTTaGTTCCTCTGGTCCTATGTG +
Preference number: 5 (lower is better)
Translates to: GCWDLNSGPSEEQLGALTASFCL*FLWSYV
Trigger: CACATAGGACCAGAGGAACAAAAGGCAGAAGGAAGC...GGTAAGAGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp ATTTCTGATCGTGAGAAAAGACTGGAACATAGATGCTTTCTCTCCTACGGCCTGGCTGTGTATAGCAGCTaGCAGGCCTGCAGGAGCCAC +
Preference number: 5 (lower is better)
Translates to: ISDREKRLEHRCFLSYGLAVYSS*QACRSH
Trigger: GTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGC...CAGGCCGTAGGAGAGAAAGCATCTATGTTCCAGTCTTTTCTCACGATCAGAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp CTTCTAAGAATCTCTGACTATAAGGGGTCTCTGCTCTGCATGTCCCAAGCTGCTTGGGTCACTCGGAACTaGGTAGCACAGAGTTGGCTC +
Preference number: 5 (lower is better)
Translates to: LLRISDYKGSLLCMSQAAWVTRN*VAQSWL
Trigger: GAGCCAACTCTGTGCTACCAAGTTCCGAGTGACCCA...AGCAGCTTGGGACATGCAGAGCAGAGACCCCTTATAGTCAGAGATTCTTAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp TCAGATCTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACGCCAAACGCATCTGGTaGGGTCACTCGGAACTTGGT +
Preference number: 5 (lower is better)
Translates to: SDLVTDGCEPPCGCWDLNAKRIW*GHSELG
Trigger: ACCAAGTTCCGAGTGACCCAACCAGATGCGTTTGGC...GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAGATCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp GAGGAGAAGAATGTCCCTGGTACGGCAGTATCCACAGATGAGCTGCACCAGGTCGCAGTTTTCTTTCTGTaGGTGCCCAGGTACAAAGTT +
Preference number: 5 (lower is better)
Translates to: EEKNVPGTAVSTDELHQVAVFFL*VPRYKV
Trigger: AACTTTGTACCTGGGCACCAACAGAAAGAAAACTGC...GACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAGGGACATTCTTCTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224288.2
ENSMUST00000237762.2
CDS-3UTR CAA 90 bp GCTCTGAGCCCTCCAAAGAGACACCGCCAGTACTCTCTTCGATATAGTGGCTGGGCAGTTTTCTTTCTGTaGGTGCCCAGGTACAAAGTT +
Preference number: 5 (lower is better)
Translates to: ALSPPKRHRQYSLRYSGWAVFFL*VPRYKV
Trigger: AACTTTGTACCTGGGCACCAACAGAAAGAAAACTGC...CCAGCCACTATATCGAAGAGAGTACTGGCGGTGTCTCTTTGGAGGGCTCAGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237762.2
CDS GCA 90 bp CCTTTTGTTCCTCTGGTCCTATGTGACCTCCTCTGGCCTGATCCTTaGCTTCTTGGTCAACAGCTATCCGAGGTTTCCCTTCTCTGTTTA +
Preference number: 5 (lower is better)
Translates to: PFVPLVLCDLLWPDP*LLGQQLSEVSLLCL
Trigger: TAAACAGAGAAGGGAAACCTCGGATAGCTGTTGACCAAGAAGGCAAGGATCAGGCCAGAGGAGGTCACATAGGACCAGAGGAACAAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp TCTTGGGAATTACCTAACCTGTACTGCCGTGGGGCCCACAGCTACACCATTCCTTGGCTTTTCTTTCTGTaGGTGCCCAGGTACAAAGTT +
Preference number: 5 (lower is better)
Translates to: SWELPNLYCRGAHSYTIPWLFFL*VPRYKV
Trigger: AACTTTGTACCTGGGCACCAACAGAAAGAAAAGCCA...AGGAATGGTGTAGCTGTGGGCCCCACGGCAGTACAGGTTAGGTAATTCCCAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp CTGTATGCGCCCTCTTGTGGCTTTTGGTGGGTATTTTTCTCTGCTCAGATTTGCCTGATCCTTGCCTTCTaGGTCAACAGCTATCCGAGG +
Preference number: 5 (lower is better)
Translates to: LYAPSCGFWWVFFSAQICLILAF*VNSYPR
Trigger: CCTCGGATAGCTGTTGACCAAGAAGGCAAGGATCAG...GCAAATCTGAGCAGAGAAAAATACCCACCAAAAGCCACAAGAGGGCGCATACAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp GGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTTGGGTGCTCTTACCACTTTGAAACTCCTCTaGAATTTCTCTCGTTTGGTG +
Preference number: 5 (lower is better)
Translates to: GCWDLNSGPSEEQLGALTTLKLL*NFSRLV
Trigger: CACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGT...GGTAAGAGCACCCAACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp CTGTATGCGCCCTCTTGTGGCTTTTGGTGGGTATTTTTCTCTGCTCAGATTTGCTGGCTTTTCTTTCTGTaGGTGCCCAGGTACAAAGTT +
Preference number: 5 (lower is better)
Translates to: LYAPSCGFWWVFFSAQICWLFFL*VPRYKV
Trigger: AACTTTGTACCTGGGCACCAACAGAAAGAAAAGCCA...GCAAATCTGAGCAGAGAAAAATACCCACCAAAAGCCACAAGAGGGCGCATACAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS-3UTR CAA 90 bp AGAGGCTGCCTACGGGACAGGCTTGCCATAGCTGCTAACACTCATTCTTTCTTCACTTTGAAACTCCTCTaGAATTTCTCTCGTTTGGTG +
Preference number: 5 (lower is better)
Translates to: RGCLRDRLAIAANTHSFFTLKLL*NFSRLV
Trigger: CACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGT...GAAGAAAGAATGAGTGTTAGCAGCTATGGCAAGCCTGTCCCGTAGGCAGCCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS GCA 72 bp ATGGCCCGGGCCCGACTTAGGGCCTGGCGGATGCCCTaGAACTCCCGGGGCTCGGGACCAGCCCGAACCTGG +
Preference number: 6 (lower is better)
Translates to: MARARLRAWRMP*NSRGSGPARTW
Trigger: CCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCAT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 72 bp TCTGCGCTCAGCATGGCCCGGGCCCGACTTAGGGCCTaGCGGATGCCCTGCAACTCCCGGGGCTCGGGACCA +
Preference number: 6 (lower is better)
Translates to: SALSMARARLRA*RMPCNSRGSGP
Trigger: TGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 72 bp GGTAGGCTACTCGGAGGAGATGCTGGAAGCTGTGGGTaGCCGGCAGGCGGCGCTGTTCCCAGAGGGCCAGGG +
Preference number: 6 (lower is better)
Translates to: GRLLGGDAGSCG*PAGGAVPRGPG
Trigger: CCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAGCATCTCCTCCGAGTAGCCTACC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 72 bp GATGTGGGGACCGGCTCTTTACCTGGAAGCTGTGGGTaGCCGGCAGGCGGCGCTGTTCCCAGAGGGCCAGGG +
Preference number: 6 (lower is better)
Translates to: DVGTGSLPGSCG*PAGGAVPRGPG
Trigger: CCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAGGTAAAGAGCCGGTCCCCACATC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224032.2
CDS CAA 72 bp GGCTCTGTCCTCAGCACGTGCAGCGCGGCTGCAGCGTaGGCCCGCAGCTGTAACCACACAGGCCGGGTGATC +
Preference number: 6 (lower is better)
Translates to: GSVLSTCSAAAA*ARSCNHTGRVI
Trigger: GATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS TCA 72 bp CCCCCTGGGTCTCAGGGCGCTCTGCCCGGCGATAGATaGGGTAGCCAGTTGCAGGAAGCCTGTGGGCTAGGG +
Preference number: 6 (lower is better)
Translates to: PPGSQGALPGDR*GSQLQEACGLG
Trigger: CCCTAGCCCACAGGCTTCCTGCAACTGGCTACCTCATCTATCGCCGGGCAGAGCGCCCTGAGACCCAGGGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 72 bp GAAAGATGTGGGGACCGGCTCTTTACCTGGAAGCTGTaGGTGGCCGGCAGGCGGCGCTGTTCCCAGAGGGCC +
Preference number: 6 (lower is better)
Translates to: ERCGDRLFTWKL*VAGRRRCSQRA
Trigger: GGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAGGTAAAGAGCCGGTCCCCACATCTTTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224032.2
CDS GCA 72 bp GGTGATCAGCAGCCGCTCCCGAAGGCTCACAGTACGTaGTGGCTGTTGGGACCCGCCTGCCTGTACCCCTCT +
Preference number: 6 (lower is better)
Translates to: GDQQPLPKAHST*WLLGPACLYPS
Trigger: AGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 72 bp GATCAGCAGCCGCTCCCGAAGGCTCACAGTACGTGCTaGCTGTTGGGACCCGCCTGCCTGTACCCCTCTGGT +
Preference number: 6 (lower is better)
Translates to: DQQPLPKAHSTC*LLGPACLYPSG
Trigger: ACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 72 bp AGGGGGCAGTCTTTCCGTTTGGCTGGAAGATGTCCCTaGAAGCACCGGGACTGGGGGAGGCGGCACAGCAGG +
Preference number: 6 (lower is better)
Translates to: RGQSFRLAGRCP*KHRDWGRRHSR
Trigger: CCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS TCA 72 bp AGGGCTGGCAGCACTTCCTGGCACACGATATCCCACTaGGCTCTCCCTCTGCAGCAGCTGTCGAGGGGGCAG +
Preference number: 6 (lower is better)
Translates to: RAGSTSWHTISH*ALPLQQLSRGQ
Trigger: CTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS GCA 72 bp AAAGCAGAACTCATGGACCGAAGCAGAGGCCGCCGGTaGCTTGGGCGGCTTAGGCGTGGGGAGGTTGTAGGG +
Preference number: 6 (lower is better)
Translates to: KAELMDRSRGRR*LGRLRRGEVVG
Trigger: CCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS GCA 72 bp CTGGGGGCACAGCCAGGGTCTTGGAGGTGCAACCTGTaGTGGGGTCCTGGTAGGCTACTCGGAGGAGATGCT +
Preference number: 6 (lower is better)
Translates to: LGAQPGSWRCNL*WGPGRLLGGDA
Trigger: AGCATCTCCTCCGAGTAGCCTACCAGGACCCCAGCACAGGTTGCACCTCCAAGACCCTGGCTGTGCCCCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 72 bp AGCCGCTCCCGAAGGCTCACAGTACGTGCTGGCTGTTaGGACCCGCCTGCCTGTACCCCTCTGGTATCAGGT +
Preference number: 6 (lower is better)
Translates to: SRSRRLTVRAGC*DPPACTPLVSG
Trigger: ACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CAA 72 bp CGCCGCAGGCGGGCAGCCAGAATGGGTCGAAGAGGCTaGAGAACAGAGCGATGCAGGGACTTCTCCAGGACC +
Preference number: 6 (lower is better)
Translates to: RRRRAARMGRRG*RTERCRDFSRT
Trigger: GGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CAA 90 bp GAAAGCCGGCGCCGCAGGCGGGCAGCCAGAATGGGTCGAAGAGGCTaGAGAACAGAGCGATGCAGGGACTTCTCCAGGACCAATTCCAGC +
Preference number: 6 (lower is better)
Translates to: ESRRRRRAARMGRRG*RTERCRDFSRTNSS
Trigger: GCTGGAATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 72 bp CTCTGCAGCAGCTGTCGAGGGGGCAGTCTTTCCGTTTaGCTGGAAGATGTCCCTGGAAGCACCGGGACTGGG +
Preference number: 6 (lower is better)
Translates to: LCSSCRGGSLSV*LEDVPGSTGTG
Trigger: CCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CAA 72 bp CCTCTGCAGCAGCTGTCGAGGGGGCAGTCTTTCCGTTaGGCTGGAAGATGTCCCTGGAAGCACCGGGACTGG +
Preference number: 6 (lower is better)
Translates to: PLQQLSRGQSFR*AGRCPWKHRDW
Trigger: CCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CAA 90 bp GGTGATCAGCAGCCGCTCCCGAAGGCTCACAGTACGTGCTGGCTGTaGGGACCCGCCTGCCTGTACCCCTCTGGTATCAGGTGTGTCATA +
Preference number: 6 (lower is better)
Translates to: GDQQPLPKAHSTCWL*GPACLYPSGIRCVI
Trigger: TATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CAA 90 bp CCTGCACTAGCTGACCCACGGCTGTGTATCGGTTTTGCATTAGCATaGTGGCTGCCCGGCCCACCTGCCTCTCTGGTGCCAGCAGAGAGC +
Preference number: 6 (lower is better)
Translates to: PALADPRLCIGFALA*WLPGPPASLVPAES
Trigger: GCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS GCA 72 bp CTTTTCTGCTACAGCCCCCTGGGTCTCAGGGCGCTCTaGCCGGCGATAGATGAGGTAGCCAGTTGCAGGAAG +
Preference number: 6 (lower is better)
Translates to: LFCYSPLGLRAL*PAIDEVASCRK
Trigger: CTTCCTGCAACTGGCTACCTCATCTATCGCCGGGCAGAGCGCCCTGAGACCCAGGGGGCTGTAGCAGAAAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 72 bp CTGCAGCAGCTTCTGGCGCACCTGTTCTGTCTCCACTaGGGAAGAAAGAGTCAGGTGGGACCCGAAGGCTCC +
Preference number: 6 (lower is better)
Translates to: LQQLLAHLFCLH*GRKSQVGPEGS
Trigger: GGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025818.8
ENSMUST00000224032.2
ENSMUST00000225427.2
CDS CCA 72 bp TGGCAATTGAAGACCCTGGGGGCACAGCCAGGGTCTTaGAGGTGCAACCTGTGCTGGGGTCCTGGTAGGCTA +
Preference number: 6 (lower is better)
Translates to: WQLKTLGAQPGS*RCNLCWGPGRL
Trigger: TAGCCTACCAGGACCCCAGCACAGGTTGCACCTCCAAGACCCTGGCTGTGCCCCCAGGGTCTTCAATTGCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS GCA 72 bp CTTCCTGGCACACGATATCCCACTGAGCTCTCCCTCTaGAGCAGCTGTCGAGGGGGCAGTCTTTCCGTTTGG +
Preference number: 6 (lower is better)
Translates to: LPGTRYPTELSL*SSCRGGSLSVW
Trigger: CCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 72 bp CGCGGCTGCAGCGTTGGCCCGCAGTTTTCTTTCTGTTaGTGCCCAGGTACAAAGTTCAGGTTGGTGGCTCCC +
Preference number: 6 (lower is better)
Translates to: RGCSVGPQFSFC*CPGTKFRLVAP
Trigger: GGGAGCCACCAACCTGAACTTTGTACCTGGGCACCAACAGAAAGAAAACTGCGGGCCAACGCTGCAGCCGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224288.2
ENSMUST00000237762.2
CDS CCA 72 bp CTTTCTGTTGGTGCCCAGGTACAAAGTTCAGGTTGGTaGCTCCCAGAGGGTGTGCTCCGGTCTCACCAGGGT +
Preference number: 6 (lower is better)
Translates to: LSVGAQVQSSGW*LPEGVLRSHQG
Trigger: ACCCTGGTGAGACCGGAGCACACCCTCTGGGAGCCACCAACCTGAACTTTGTACCTGGGCACCAACAGAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025818.8
ENSMUST00000224288.2
ENSMUST00000225427.2
ENSMUST00000237762.2
CDS GCA 72 bp GCCAGAATGGGTCGAAGAGGCTTGAGAACAGAGCGATaGAGGGACTTCTCCAGGACCAATTCCAGCCGCTCT +
Preference number: 6 (lower is better)
Translates to: ARMGRRGLRTER*RDFSRTNSSRS
Trigger: AGAGCGGCTGGAATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CAA 90 bp ATGGTAGCCCTGGTCCTTGTAGAGGAAGAGGCCAAACGCATCTGGTaGGGTCACTCGGAACTTGGTAGCACAGAGTTGGCTCAACGTGGC +
Preference number: 6 (lower is better)
Translates to: MVALVLVEEEAKRIW*GHSELGSTELAQRG
Trigger: GCCACGTTGAGCCAACTCTGTGCTACCAAGTTCCGAGTGACCCAACCAGATGCGTTTGGCCTCTTCCTCTACAAGGACCAGGGCTACCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS TCA 72 bp CCAGCCCGAACCTGGGTCAGTAGGTCCTGCACTAGCTaGCCCACGGCTGTGTATCGGTTTTGCATTAGCATT +
Preference number: 6 (lower is better)
Translates to: PARTWVSRSCTS*PTAVYRFCISI
Trigger: AATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS TCA 72 bp CTAGTGAAACTGTGCTGGGTGACGTCAGAGTCCCTCTaGGCATGGTCAATAGGGGAAAGATGTGGGGACCGG +
Preference number: 6 (lower is better)
Translates to: LVKLCWVTSESL*AWSIGERCGDR
Trigger: CCGGTCCCCACATCTTTCCCCTATTGACCATGCTCAGAGGGACTCTGACGTCACCCAGCACAGTTTCACTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224032.2
CDS CCA 72 bp TTTCTTTCTGTTGGTGCCCAGGTACAAAGTTCAGGTTaGTGGCTCCCAGAGGGTGTGCTCCGGTCTCACCAG +
Preference number: 6 (lower is better)
Translates to: FLSVGAQVQSSG*WLPEGVLRSHQ
Trigger: CTGGTGAGACCGGAGCACACCCTCTGGGAGCCACCAACCTGAACTTTGTACCTGGGCACCAACAGAAAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025818.8
ENSMUST00000224288.2
ENSMUST00000225427.2
ENSMUST00000237762.2
CDS CCA 72 bp TCTGGTTGGGTCACTCGGAACTTGGTAGCACAGAGTTaGCTCAACGTGGCAATTGAAGACCCTGGGGGCACA +
Preference number: 6 (lower is better)
Translates to: SGWVTRNLVAQS*LNVAIEDPGGT
Trigger: TGTGCCCCCAGGGTCTTCAATTGCCACGTTGAGCCAACTCTGTGCTACCAAGTTCCGAGTGACCCAACCAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 72 bp GCCCTGGTCCTTGTAGAGGAAGAGGCCAAACGCATCTaGTTGGGTCACTCGGAACTTGGTAGCACAGAGTTG +
Preference number: 6 (lower is better)
Translates to: ALVLVEEEAKRI*LGHSELGSTEL
Trigger: CAACTCTGTGCTACCAAGTTCCGAGTGACCCAACCAGATGCGTTTGGCCTCTTCCTCTACAAGGACCAGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CAA 72 bp GAGGTCTCGGTGGACACTCGCACTTTGAAACTCCTCTaGAATTTCTCTCGTTTGGTGGGGCCCAGATCCCCG +
Preference number: 6 (lower is better)
Translates to: EVSVDTRTLKLL*NFSRLVGPRSP
Trigger: CGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS GCA 72 bp CCTCTGGTCCTATGTGACCTCCTCTGGCCTGATCCTTaGCTTCTTGGTCAACAGCTATCCGAGGTTTCCCTT +
Preference number: 6 (lower is better)
Translates to: PLVLCDLLWPDP*LLGQQLSEVSL
Trigger: AAGGGAAACCTCGGATAGCTGTTGACCAAGAAGGCAAGGATCAGGCCAGAGGAGGTCACATAGGACCAGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 72 bp TACTCAGCTTCTAACAGGAGGTCAGGAAGGTCGCACTaGGCCAAAACAAGGCTCAGCAGAGGCAGGAACTCA +
Preference number: 6 (lower is better)
Translates to: YSASNRRSGRSH*AKTRLSRGRNS
Trigger: TGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025818.8
ENSMUST00000224032.2
ENSMUST00000225427.2
CDS CAA 72 bp TTTTCTTTCTGTTGGTGCCCAGGTACAAAGTTCAGGTaGGTGGCTCCCAGAGGGTGTGCTCCGGTCTCACCA +
Preference number: 6 (lower is better)
Translates to: FSFCWCPGTKFR*VAPRGCAPVSP
Trigger: TGGTGAGACCGGAGCACACCCTCTGGGAGCCACCAACCTGAACTTTGTACCTGGGCACCAACAGAAAGAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025818.8
ENSMUST00000224288.2
ENSMUST00000225427.2
ENSMUST00000237762.2
CDS CAA 72 bp GACAGAGGGCTGGAGGTCTCGGTGGACACTCGCACTTaGAAACTCCTCTTGAATTTCTCTCGTTTGGTGGGG +
Preference number: 6 (lower is better)
Translates to: DRGLEVSVDTRT*KLLLNFSRLVG
Trigger: CCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CAA 72 bp CTGGTCCTTGTAGAGGAAGAGGCCAAACGCATCTGGTaGGGTCACTCGGAACTTGGTAGCACAGAGTTGGCT +
Preference number: 6 (lower is better)
Translates to: LVLVEEEAKRIW*GHSELGSTELA
Trigger: AGCCAACTCTGTGCTACCAAGTTCCGAGTGACCCAACCAGATGCGTTTGGCCTCTTCCTCTACAAGGACCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 72 bp CTGCCTTTTGTTCCTCTGGTCCTATGTGACCTCCTCTaGCCTGATCCTTGCCTTCTTGGTCAACAGCTATCC +
Preference number: 6 (lower is better)
Translates to: LPFVPLVLCDLL*PDPCLLGQQLS
Trigger: GGATAGCTGTTGACCAAGAAGGCAAGGATCAGGCCAGAGGAGGTCACATAGGACCAGAGGAACAAAAGGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CAA 90 bp ATCAGGTGTGTCATACAGTGGGTCTGTAGATGGCTTTTCTTTCTGTaGGTGCCCAGGTACAAAGTTCAGGTTGGTGGCTCCCAGAGGGTG +
Preference number: 6 (lower is better)
Translates to: IRCVIQWVCRWLFFL*VPRYKVQVGGSQRV
Trigger: CACCCTCTGGGAGCCACCAACCTGAACTTTGTACCTGGGCACCAACAGAAAGAAAAGCCATCTACAGACCCACTGTATGACACACCTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 72 bp TGCCTGTACCCCTCTGGTATCAGGTGTGTCATACAGTaGGTCTGTAGATGGCTTTTCTTTCTGTTGGTGCCC +
Preference number: 6 (lower is better)
Translates to: CLYPSGIRCVIQ*VCRWLFFLLVP
Trigger: GGGCACCAACAGAAAGAAAAGCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CAA 72 bp AAGAGGCCAAACGCATCTGGTTGGGTCACTCGGAACTaGGTAGCACAGAGTTGGCTCAACGTGGCAATTGAA +
Preference number: 6 (lower is better)
Translates to: KRPNASGWVTRN*VAQSWLNVAIE
Trigger: TTCAATTGCCACGTTGAGCCAACTCTGTGCTACCAAGTTCCGAGTGACCCAACCAGATGCGTTTGGCCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS GCA 72 bp TACAGTGGGTCTGTAGATGGCTTTTCTTTCTGTTGGTaGCCAGGTACAAAGTTCAGGTTGGTGGCTCCCAGA +
Preference number: 6 (lower is better)
Translates to: YSGSVDGFSFCW*PGTKFRLVAPR
Trigger: TCTGGGAGCCACCAACCTGAACTTTGTACCTGGGCACCAACAGAAAGAAAAGCCATCTACAGACCCACTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 72 bp TCATACAGTGGGTCTGTAGATGGCTTTTCTTTCTGTTaGTGCCCAGGTACAAAGTTCAGGTTGGTGGCTCCC +
Preference number: 6 (lower is better)
Translates to: SYSGSVDGFSFC*CPGTKFRLVAP
Trigger: GGGAGCCACCAACCTGAACTTTGTACCTGGGCACCAACAGAAAGAAAAGCCATCTACAGACCCACTGTATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2
CDS CCA 72 bp TCTGGTATCAGGTGTGTCATACAGTGGGTCTGTAGATaGCTTTTCTTTCTGTTGGTGCCCAGGTACAAAGTT +
Preference number: 6 (lower is better)
Translates to: SGIRCVIQWVCR*LFFLLVPRYKV
Trigger: AACTTTGTACCTGGGCACCAACAGAAAGAAAAGCCATCTACAGACCCACTGTATGACACACCTGATACCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025818.8
ENSMUST00000225427.2