RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RIMS1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041670

Ensembl transcript IDs: ENSMUST00000081544.14, ENSMUST00000097808.9, ENSMUST00000097809.11, ENSMUST00000115273.10, ENSMUST00000164877.8, ENSMUST00000239255.2

Found 705 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GAGAGGGGGTGCATATTGATGCAGCTGCAGGACCAAGCAGGCGCCTaGAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCA +
Preference number: 1 (lower is better)
Translates to: ERGCILMQLQDQAGA*STYTGHKGNYEEYA
Trigger: TGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTTGGTCCTGCAGCTGCATCAATATGCACCCCCTCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR CCA 90 bp CTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGGGGCATaGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCAAAT +
Preference number: 1 (lower is better)
Translates to: LILCSFQGRQVYSGA*LRSLGIAESVLGSN
Trigger: ATTTGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR TCA 90 bp CAGACAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTaGAAGTGTCTTAGGCTCAAATCCATTCTTAGTCACCATTTTGGG +
Preference number: 1 (lower is better)
Translates to: QTSLLWGMAEKPGHS*KCLRLKSILSHHFG
Trigger: CCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR CCA 90 bp GTTCTTCCTGCACAGCATGGTGGGTGGTGGTCAATCTGTGCCCCGTaGGATAATGGACAGGGAATTCTGACATGTGTAAATAATAATAAA +
Preference number: 1 (lower is better)
Translates to: VLPAQHGGWWSICAP*DNGQGILTCVNNNK
Trigger: TTTATTATTATTTACACATGTCAGAATTCCCTGTCCATTATCCCACGGGGCACAGATTGACCACCACCCACCATGCTGTGCAGGAAGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
3UTR CCA 90 bp GAAGTAAAAAGGCATTTCGGAAAGGGTTTCCAAAGCACTACTATGTaGTTAGCCTTCATCCCCAGCATCAGTTCTAGGTCCTTCAAAGTC +
Preference number: 1 (lower is better)
Translates to: EVKRHFGKGFQSTTM*LAFIPSISSRSFKV
Trigger: GACTTTGAAGGACCTAGAACTGATGCTGGGGATGAAGGCTAACCACATAGTAGTGCTTTGGAAACCCTTTCCGAAATGCCTTTTTACTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR TCA 90 bp AAACACCAGGGAAACAACACTGCTTGTGGTCTGTGCAGAAATGTGTaGAGTACACCTTTTCACAGAGTGAGACTTTCCAGTTTGTTCAGT +
Preference number: 1 (lower is better)
Translates to: KHQGNNTACGLCRNV*STPFHRVRLSSLFS
Trigger: ACTGAACAAACTGGAAAGTCTCACTCTGTGAAAAGGTGTACTTCACACATTTCTGCACAGACCACAAGCAGTGTTGTTTCCCTGGTGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR TCA 90 bp CCAAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATaGAGAATATGCAAATTGGTATTTGGCTGTATTCTTTTTCTTCCC +
Preference number: 1 (lower is better)
Translates to: PSRRLQHIHRSQGKL*RICKLVFGCILFLP
Trigger: GGGAAGAAAAAGAATACAGCCAAATACCAATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR GCA 90 bp TTTATGAACTGGAATTTCCAGTGCAATATTAAACAGCTCATACTATaGTCTTTCCAGGGCAGACAAGTCTACTCTGGGGCATGGCTGAGA +
Preference number: 1 (lower is better)
Translates to: FMNWNFQCNIKQLIL*SFQGRQVYSGAWLR
Trigger: TCTCAGCCATGCCCCAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAAATTCCAGTTCATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR TCA 90 bp TGTCAGTGGCTCTCACTAGCATGTCGATTCTTACTGCAATGTGATTaGCTGCCTTGTTCTGTCATACGAAGCCATGTTTTAAACAACAAT +
Preference number: 1 (lower is better)
Translates to: CQWLSLACRFLLQCD*LPCSVIRSHVLNNN
Trigger: ATTGTTGTTTAAAACATGGCTTCGTATGACAGAACAAGGCAGTCAATCACATTGCAGTAAGAATCGACATGCTAGTGAGAGCCACTGACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR TCA 90 bp CAAGTGGTCAAGATAGAAAGATATTACTACCCAATTTTAATCGGTTaGTTGTTGGCCACTAAGACAGAACGGAATCTAGTAGAAGTGCAC +
Preference number: 1 (lower is better)
Translates to: QVVKIERYYYPILIG*LLATKTERNLVEVH
Trigger: GTGCACTTCTACTAGATTCCGTTCTGTCTTAGTGGCCAACAATCAACCGATTAAAATTGGGTAGTAATATCTTTCTATCTTGACCACTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
3UTR TCA 90 bp TGGGATAATGGACAGGGAATTCTGACATGTGTAAATAATAATAAATaGTTCACTTGGTGCAGGCAGTATGTCTATGGATTAAAACCTAGT +
Preference number: 1 (lower is better)
Translates to: WDNGQGILTCVNNNK*FTWCRQYVYGLKPS
Trigger: ACTAGGTTTTAATCCATAGACATACTGCCTGCACCAAGTGAATCATTTATTATTATTTACACATGTCAGAATTCCCTGTCCATTATCCCA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
3UTR-3UTR TCA 90 bp TTTCCAGGGCAGACAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCACCATTTTGGGGAGTTaGGAGCATGGTTTCTACACA +
Preference number: 2 (lower is better)
Translates to: FPGQTSLLWGMAEKPGHSTILGS*EHGFYT
Trigger: TGTGTAGAAACCATGCTCTCAACTCCCCAAAATGGT...GCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTGCCCTGGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR GCA 90 bp TTTCCAGGGCAGACAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTCTCTCTTTCCTATTTaGAAGAAGTGTCAGTGGCTC +
Preference number: 2 (lower is better)
Translates to: FPGQTSLLWGMAEKPGHSSLFPI*KKCQWL
Trigger: GAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGA...GCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTGCCCTGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCAGCTGATACCCTTCCCTaGCTTTACCTTGCCCAGCTT +
Preference number: 2 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPADTLP*LYLAQL
Trigger: AAGCTGGGCAAGGTAAAGCCAGGGAAGGGTATCAGC...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR TCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCAACCATTTTGGGGAGTTaGGAGCATGGTTTCTACACA +
Preference number: 2 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSTILGS*EHGFYT
Trigger: TGTGTAGAAACCATGCTCTCAACTCCCCAAAATGGT...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR GCA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCCCAGGGAAACAACACTaGTTGTGGTCTGTGCAGAAA +
Preference number: 2 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTPGKQH*LWSVQK
Trigger: TTTCTGCACAGACCACAAGCAGTGTTGTTTCCCTGG...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR GCA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGAAACTTTGGGGAAAATaGTACAGAGACGGCTTCAGC +
Preference number: 2 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLKLWGK*YRDGFS
Trigger: GCTGAAGCCGTCTCTGTAGCATTTTCCCCAAAGTTT...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR TCA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTACTGTGCAGAAATGTGTaGAGTACACCTTTTCACAGA +
Preference number: 2 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLLCRNV*STPFHR
Trigger: TCTGTGAAAAGGTGTACTTCACACATTTCTGCACAG...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CCA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGCCAGTTTGTTCAGTTTaGTGTGTGTGTGAACTTGAG +
Preference number: 2 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLPVCSV*CVCELE
Trigger: CTCAAGTTCACACACACACCAAACTGAACAAACTGG...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CCA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGGGAGTTGAGAGCATaGTTTCTACACATGAACATT +
Preference number: 2 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLGELRA*FLHMNI
Trigger: AATGTTCATGTGTAGAAACCATGCTCTCAACTCCCC...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CCA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCCAGACAAGTCTACTCTaGGGCATGGCTGAGAAGCCT +
Preference number: 2 (lower is better)
Translates to: KMHAALNSSRSCCSNCEIQTSLL*GMAEKP
Trigger: AGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTG...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR CAA 90 bp CTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCTATTaGCAAGAAGTGTCAGTGGCTCTCACTAGCATGTCGATTCTTACT +
Preference number: 2 (lower is better)
Translates to: LSLSLSLSLSLSLSY*QEVSVALTSMSILT
Trigger: AGTAAGAATCGACATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR TCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGAAGCCTGGGCATAGCTaGAAGTGTCTTAGGCTCAAA +
Preference number: 2 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMKPGHS*KCLRLK
Trigger: TTTGAGCCTAAGACACTTTCAGCTATGCCCAGGCTT...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR GCA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGCATGTCGATTCTTACTaGAATGTGATTGACTGCCTT +
Preference number: 2 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLHVDSY*NVIDCL
Trigger: AAGGCAGTCAATCACATTGCAGTAAGAATCGACATG...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR GCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCACTTCAAAGTCTTCTGTaGCAAACAATGGAAAATAGC +
Preference number: 2 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSLQSLL*QTMENS
Trigger: GCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAG...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCACCAGTTTGTTCAGTTTaGTGTGTGTGTGAACTTGAG +
Preference number: 2 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPPVCSV*CVCELE
Trigger: CTCAAGTTCACACACACACCAAACTGAACAAACTGG...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CCA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGGCTGATACCCTTCCCTaGCTTTACCTTGCCCAGCTT +
Preference number: 2 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVADTLP*LYLAQL
Trigger: AAGCTGGGCAAGGTAAAGCCAGGGAAGGGTATCAGC...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCAATGAATTATCTGGAATaGGAACAGATACGCTCTTCA +
Preference number: 2 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSMNYLE*EQIRSS
Trigger: TGAAGAGCGTATCTGTTCCCATTCCAGATAATTCAT...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR TCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCATTACTGCAATGTGATTaGCTGCCTTGTTCTGTCATA +
Preference number: 2 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPLLQCD*LPCSVI
Trigger: TATGACAGAACAAGGCAGTCAATCACATTGCAGTAA...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR TCA 90 bp GTTTGGTGTGTGTGTGAACTTGAGGTTTCCTTCCCCTCTCTCTCTCTCTCTCTCTTACTGCAATGTGATTaGCTGCCTTGTTCTGTCATA +
Preference number: 2 (lower is better)
Translates to: VWCVCELEVSFPSLSLSLLLQCD*LPCSVI
Trigger: TATGACAGAACAAGGCAGTCAATCACATTGCAGTAA...GAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACACACACCAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR TCA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAACCATAACTCTGTTATaGCGAAGCAAAGAAAGACAA +
Preference number: 2 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLTITLL*RSKERQ
Trigger: TTGTCTTTCTTTGCTTCGTCATAACAGAGTTATGGT...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR TCA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCACCATAACTCTGTTATaGCGAAGCAAAGAAAGACAA +
Preference number: 2 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTTITLL*RSKERQ
Trigger: TTGTCTTTCTTTGCTTCGTCATAACAGAGTTATGGT...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR GCA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATCCAGGGAAACAACACTaGTTGTGGTCTGTGCAGAAA +
Preference number: 2 (lower is better)
Translates to: GACSTYTGHKGNYEEYANPGKQH*LWSVQK
Trigger: TTTCTGCACAGACCACAAGCAGTGTTGTTTCCCTGG...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR TCA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCAAGCCTGGGCATAGCTaGAAGTGTCTTAGGCTCAAA +
Preference number: 2 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVKPGHS*KCLRLK
Trigger: TTTGAGCCTAAGACACTTTCAGCTATGCCCAGGCTT...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR TCA 90 bp GCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGAAGCCTGGGCATAGCTaGAAGTGTCTTAGGCTCAAA +
Preference number: 2 (lower is better)
Translates to: AILNSSYYALSRADKSTLKPGHS*KCLRLK
Trigger: TTTGAGCCTAAGACACTTTCAGCTATGCCCAGGCTT...CAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR GCA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATAAACTTTGGGGAAAATaGTACAGAGACGGCTTCAGC +
Preference number: 2 (lower is better)
Translates to: GACSTYTGHKGNYEEYANKLWGK*YRDGFS
Trigger: GCTGAAGCCGTCTCTGTAGCATTTTCCCCAAAGTTT...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCAATGAATTATCTGGAATaGGAACAGATACGCTCTTCA +
Preference number: 2 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPMNYLE*EQIRSS
Trigger: TGAAGAGCGTATCTGTTCCCATTCCAGATAATTCAT...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGGGGGAGTTGAGAGCATaGTTTCTACACATGAACATT +
Preference number: 2 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMGELRA*FLHMNI
Trigger: AATGTTCATGTGTAGAAACCATGCTCTCAACTCCCC...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR TCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGTTACTGCAATGTGATTaGCTGCCTTGTTCTGTCATA +
Preference number: 2 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMLLQCD*LPCSVI
Trigger: TATGACAGAACAAGGCAGTCAATCACATTGCAGTAA...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR GCA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCTCCCTGGCTTTACCTTaGCCAGCTTTTGAAAACTTT +
Preference number: 2 (lower is better)
Translates to: KMHAALNSSRSCCSNCEISLALP*PAFENF
Trigger: AAAGTTTTCAAAAGCTGGGCAAGGTAAAGCCAGGGA...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCAGCAGAGTTTATGAACTaGAATTTCCAGTGCAATATT +
Preference number: 2 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPAEFMN*NFQCNI
Trigger: AATATTGCACTGGAAATTCCAGTTCATAAACTCTGC...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR GCA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTTCTCTCTTTCCTATTTaGAAGAAGTGTCAGTGGCTC +
Preference number: 2 (lower is better)
Translates to: SSAILNSSYYALSRADKSSLFPI*KKCQWL
Trigger: GAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGA...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR GCA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATACCAGGGAAACAACACTaGTTGTGGTCTGTGCAGAAA +
Preference number: 2 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKIPGKQH*LWSVQK
Trigger: TTTCTGCACAGACCACAAGCAGTGTTGTTTCCCTGG...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
3UTR-3UTR GCA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTAAAACTTTGGGGAAAATaGTACAGAGACGGCTTCAGC +
Preference number: 2 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVKLWGK*YRDGFS
Trigger: GCTGAAGCCGTCTCTGTAGCATTTTCCCCAAAGTTT...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR GCA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTTCCCTGGCTTTACCTTaGCCAGCTTTTGAAAACTTT +
Preference number: 2 (lower is better)
Translates to: SSAILNSSYYALSRADKSSLALP*PAFENF
Trigger: AAAGTTTTCAAAAGCTGGGCAAGGTAAAGCCAGGGA...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CCA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGCCAGTTTGTTCAGTTTaGTGTGTGTGTGAACTTGAG +
Preference number: 2 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVPVCSV*CVCELE
Trigger: CTCAAGTTCACACACACACCAAACTGAACAAACTGG...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR TCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGTGCAGAAATGTGTaGAGTACACCTTTTCACAGA +
Preference number: 2 (lower is better)
Translates to: SAILNSSYYALSRADKSTLCRNV*STPFHR
Trigger: TCTGTGAAAAGGTGTACTTCACACATTTCTGCACAG...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR GCA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCCATGTCGATTCTTACTaGAATGTGATTGACTGCCTT +
Preference number: 2 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVHVDSY*NVIDCL
Trigger: AAGGCAGTCAATCACATTGCAGTAAGAATCGACATG...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR GCA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATAAAACTTTGGGGAAAATaGTACAGAGACGGCTTCAGC +
Preference number: 2 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKIKLWGK*YRDGFS
Trigger: GCTGAAGCCGTCTCTGTAGCATTTTCCCCAAAGTTT...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
3UTR-3UTR CCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTGGGGAGTTGAGAGCATaGTTTCTACACATGAACATT +
Preference number: 2 (lower is better)
Translates to: SAILNSSYYALSRADKSTGELRA*FLHMNI
Trigger: AATGTTCATGTGTAGAAACCATGCTCTCAACTCCCC...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR TCA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGACCATAACTCTGTTATaGCGAAGCAAAGAAAGACAA +
Preference number: 2 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVTITLL*RSKERQ
Trigger: TTGTCTTTCTTTGCTTCGTCATAACAGAGTTATGGT...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR GCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCATGTCGATTCTTACTaGAATGTGATTGACTGCCTT +
Preference number: 2 (lower is better)
Translates to: SAILNSSYYALSRADKSTHVDSY*NVIDCL
Trigger: AAGGCAGTCAATCACATTGCAGTAAGAATCGACATG...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR GCA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATATCCCTGGCTTTACCTTaGCCAGCTTTTGAAAACTTT +
Preference number: 2 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKISLALP*PAFENF
Trigger: AAAGTTTTCAAAAGCTGGGCAAGGTAAAGCCAGGGA...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
3UTR-3UTR TCA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATACCAATTTTAATCGGTTaGTTGTTGGCCACTAAGACA +
Preference number: 2 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKIPILIG*LLATKT
Trigger: TGTCTTAGTGGCCAACAATCAACCGATTAAAATTGG...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
3UTR-3UTR GCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTTCAAAGTCTTCTGTaGCAAACAATGGAAAATAGC +
Preference number: 2 (lower is better)
Translates to: SAILNSSYYALSRADKSTLQSLL*QTMENS
Trigger: GCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAG...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CAA 90 bp TTTCCAGGGCAGACAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCCACCATTTTGGGGAGTaGAGAGCATGGTTTCTACAC +
Preference number: 3 (lower is better)
Translates to: FPGQTSLLWGMAEKPGHSHHFGE*RAWFLH
Trigger: GTGTAGAAACCATGCTCTCAACTCCCCAAAATGGTG...GCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTGCCCTGGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR CCA 72 bp GCACAGCATGGTGGGTGGTGGTCAATCTGTGCCCCGTaGGATAATGGACAGGGAATTCTGACATGTGTAAAT +
Preference number: 3 (lower is better)
Translates to: AQHGGWWSICAP*DNGQGILTCVN
Trigger: ATTTACACATGTCAGAATTCCCTGTCCATTATCCCACGGGGCACAGATTGACCACCACCCACCATGCTGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
3UTR-3UTR CAA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCGGGAAACAACACTGCTaGTGGTCTGTGCAGAAATGT +
Preference number: 3 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTGKQHC*WSVQKC
Trigger: ACATTTCTGCACAGACCACAAGCAGTGTTGTTTCCC...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR TCA 72 bp CTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTaGAAGTGTCTTAGGCTCAAATCCATTCTTAGTCAC +
Preference number: 3 (lower is better)
Translates to: LLWGMAEKPGHS*KCLRLKSILSH
Trigger: GTGACTAAGAATGGATTTGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR GCA 72 bp TGCATATTGATGCAGCTGCAGGACCAAGCAGGCGCCTaGAGCACATACACAGGTCACAAGGGAAATTATGAA +
Preference number: 3 (lower is better)
Translates to: CILMQLQDQAGA*STYTGHKGNYE
Trigger: TTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTTGGTCCTGCAGCTGCATCAATATGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CAA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTACAGGCAAAACACAAGTaGATTGTCTGTCTCCAACAA +
Preference number: 3 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLQAKHK*IVCLQQ
Trigger: TTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTG...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CAA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCATCTCCAACAATGCTCTaGATCATGAAATATCTGGTT +
Preference number: 3 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSSPTML*IMKYLV
Trigger: AACCAGATATTTCATGATCAAGAGCATTGTTGGAGA...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CAA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCGGTGTGTGTGTGAACTaGAGGTTTCCTTCCCCTCTC +
Preference number: 3 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVGVCVN*RFPSPL
Trigger: GAGAGGGGAAGGAAACCTCAAGTTCACACACACACC...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CAA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGGTGAGACTTTCCAGTTaGTTCAGTTTGGTGTGTGTG +
Preference number: 3 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMVRLSS*FSLVCV
Trigger: CACACACACCAAACTGAACAAACTGGAAAGTCTCAC...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CAA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCGGGAAACAACACTGCTaGTGGTCTGTGCAGAAATGT +
Preference number: 3 (lower is better)
Translates to: KMHAALNSSRSCCSNCEIGKQHC*WSVQKC
Trigger: ACATTTCTGCACAGACCACAAGCAGTGTTGTTTCCC...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CAA 90 bp GTTTGGTGTGTGTGTGAACTTGAGGTTTCCTTCCCCTCTCTCTCTCTCTCTCTCTCTCCAACAATGCTCTaGATCATGAAATATCTGGTT +
Preference number: 3 (lower is better)
Translates to: VWCVCELEVSFPSLSLSLSPTML*IMKYLV
Trigger: AACCAGATATTTCATGATCAAGAGCATTGTTGGAGA...GAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACACACACCAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CAA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCGTGAGACTTTCCAGTTaGTTCAGTTTGGTGTGTGTG +
Preference number: 3 (lower is better)
Translates to: KMHAALNSSRSCCSNCEIVRLSS*FSLVCV
Trigger: CACACACACCAAACTGAACAAACTGGAAAGTCTCAC...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR TCA 72 bp GGAAACAACACTGCTTGTGGTCTGTGCAGAAATGTGTaGAGTACACCTTTTCACAGAGTGAGACTTTCCAGT +
Preference number: 3 (lower is better)
Translates to: GNNTACGLCRNV*STPFHRVRLSS
Trigger: ACTGGAAAGTCTCACTCTGTGAAAAGGTGTACTTCACACATTTCTGCACAGACCACAAGCAGTGTTGTTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CAA 90 bp AAGTGTCTTAGGCTCAAATCCATTCTTAGTCACCATTTTGGGGAGTTGAGAGCACTCTCTCTTTCCTATTaGCAAGAAGTGTCAGTGGCT +
Preference number: 3 (lower is better)
Translates to: KCLRLKSILSHHFGELRALSLSY*QEVSVA
Trigger: AGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAG...TGCTCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CAA 90 bp GCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGCTCTCTCTTTCCTATTaGCAAGAAGTGTCAGTGGCT +
Preference number: 3 (lower is better)
Translates to: AILNSSYYALSRADKSTLLSLSY*QEVSVA
Trigger: AGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAG...CAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CAA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCCTCTCTCTTTCCTATTaGCAAGAAGTGTCAGTGGCT +
Preference number: 3 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVLSLSY*QEVSVA
Trigger: AGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAG...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CAA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTCTCTCTTTCCTATTaGCAAGAAGTGTCAGTGGCT +
Preference number: 3 (lower is better)
Translates to: SAILNSSYYALSRADKSTLSLSY*QEVSVA
Trigger: AGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAG...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR TCA 72 bp CTCTCACTAGCATGTCGATTCTTACTGCAATGTGATTaGCTGCCTTGTTCTGTCATACGAAGCCATGTTTTA +
Preference number: 3 (lower is better)
Translates to: LSLACRFLLQCD*LPCSVIRSHVL
Trigger: TAAAACATGGCTTCGTATGACAGAACAAGGCAGTCAATCACATTGCAGTAAGAATCGACATGCTAGTGAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CAA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTTCTCCAACAATGCTCTaGATCATGAAATATCTGGTT +
Preference number: 3 (lower is better)
Translates to: SSAILNSSYYALSRADKSSPTML*IMKYLV
Trigger: AACCAGATATTTCATGATCAAGAGCATTGTTGGAGA...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
3UTR-3UTR CAA 90 bp TTGTTCTGTCATACGAAGCCATGTTTTAAACAACAATTGGGACACAATTATCGATCTCCAACAATGCTCTaGATCATGAAATATCTGGTT +
Preference number: 3 (lower is better)
Translates to: LFCHTKPCFKQQLGHNYRSPTML*IMKYLV
Trigger: AACCAGATATTTCATGATCAAGAGCATTGTTGGAGA...TCGATAATTGTGTCCCAATTGTTGTTTAAAACATGGCTTCGTATGACAGAACAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR GCA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCCTGTGGCGCCGCTCGTaGCTCGCTCGGGACACCCGG +
Preference number: 4 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTLWRRS*LARDTR
Trigger: CCGGGTGTCCCGAGCGAGGCACGAGCGGCGCCACAG...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCAAGCGCCACGTCGCTGTaGCGCCGCTCGTGCCTCGCT +
Preference number: 4 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSSATSL*RRSCLA
Trigger: AGCGAGGCACGAGCGGCGCCACAGCGACGTGGCGCT...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TTTCCAGGGCAGACAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCACATCTGACGCCTCTTaGCTCCCCGCTTGGGCCGGT +
Preference number: 4 (lower is better)
Translates to: FPGQTSLLWGMAEKPGHSTSDAS*LPAWAG
Trigger: ACCGGCCCAAGCGGGGAGGCAAGAGGCGTCAGATGT...GCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTGCCCTGGAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TTTCCAGGGCAGACAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCCCTCCTCCTCGGAGCTaGTCACCGACATCTGACGCC +
Preference number: 4 (lower is better)
Translates to: FPGQTSLLWGMAEKPGHSPPPRS*SPTSDA
Trigger: GGCGTCAGATGTCGGTGAGCAGCTCCGAGGAGGAGG...GCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTGCCCTGGAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TTTCCAGGGCAGACAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGGCGGCCGACAAGCTaGGCTGGCCCCAATCCATCA +
Preference number: 4 (lower is better)
Translates to: FPGQTSLLWGMAEKPGHSWRPTS*AGPNPS
Trigger: TGATGGATTGGGGCCAGCCCAGCTTGTCGGCCGCCA...GCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTGCCCTGGAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR TCA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCGGCGGGTCAGGGGAGTaGGTGTGGGATCCACCAGGG +
Preference number: 4 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTGGSGE*VWDPPG
Trigger: CCCTGGTGGATCCCACACTCACTCCCCTGACCCGCC...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR GCA 90 bp TTTCCAGGGCAGACAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCAGGTCGGGCAGTTCTTaGATAGGGGGAGGCACCGTG +
Preference number: 4 (lower is better)
Translates to: FPGQTSLLWGMAEKPGHSRSGSS*IGGGTV
Trigger: CACGGTGCCTCCCCCTATGCAAGAACTGCCCGACCT...GCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTGCCCTGGAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TTTCCAGGGCAGACAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCGGCGTGAGGTGCTGCTaGCTCTGGAAATGGCGGACA +
Preference number: 4 (lower is better)
Translates to: FPGQTSLLWGMAEKPGHSGVRCC*LWKWRT
Trigger: TGTCCGCCATTTCCAGAGCCAGCAGCACCTCACGCC...GCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTGCCCTGGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCGGGGTGGCGAGGGTTTaGCGGCCGACAAGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTGVARV*RPTSWA
Trigger: AGCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCC...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR TCA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCCGCACCGACTCGGACTaGTCGGAGCTCAGCGAGTCG +
Preference number: 4 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTRTDSD*SELSES
Trigger: CGACTCGCTGAGCTCCGATCAGTCCGAGTCGGTGCG...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCATGTGCTGCTGAGGCGTaGGGTGCTGCTGGCTCTGGA +
Preference number: 4 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSCAAEA*GAAGSG
Trigger: TCCAGAGCCAGCAGCACCTCACGCCTCAGCAGCACA...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGCTGTGGCGCCGCTCGTaGCTCGCTCGGGACACCCGG +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMLWRRS*LARDTR
Trigger: CCGGGTGTCCCGAGCGAGGCACGAGCGGCGCCACAG...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGGCGGCAGCCTCGGTGTaGGGGAGCGCCACGTCGCTG +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMAAASV*GSATSL
Trigger: CAGCGACGTGGCGCTCCCGCACACCGAGGCTGCCGC...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTATCGTGTACTCCGGCGTaGACACGCCCTCCTCCTCGG +
Preference number: 4 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLSCTPA*TRPPPR
Trigger: CCGAGGAGGAGGGCGTGTCCACGCCGGAGTACACGA...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TTTCCAGGGCAGACAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCCTGGAGCTTTCTCCGTaGATATGCCGCCTGGGCATG +
Preference number: 4 (lower is better)
Translates to: FPGQTSLLWGMAEKPGHSLELSP*ICRLGM
Trigger: CATGCCCAGGCGGCATATCCACGGAGAAAGCTCCAG...GCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTGCCCTGGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TTTCCAGGGCAGACAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCGCCGACAAGCTGGGCTaGCCCCAATCCATCAAGGAA +
Preference number: 4 (lower is better)
Translates to: FPGQTSLLWGMAEKPGHSADKLG*PQSIKE
Trigger: TTCCTTGATGGATTGGGGCCAGCCCAGCTTGTCGGC...GCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTGCCCTGGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCATGGCGGCCGACAAGCTaGGCTGGCCCCAATCCATCA +
Preference number: 4 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSWRPTS*AGPNPS
Trigger: TGATGGATTGGGGCCAGCCCAGCTTGTCGGCCGCCA...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR GCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCAGCGTGCATGCGCATCTaGTGTTCCTCCAGCGGCGCC +
Preference number: 4 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPACMRI*CSSSGA
Trigger: GGCGCCGCTGGAGGAACAGCAGATGCGCATGCACGC...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCACGGGACACCCGGGCGTaGATGCGCATCTGCTGTTCC +
Preference number: 4 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPRDTRA*MRICCS
Trigger: GGAACAGCAGATGCGCATGCACGCCCGGGTGTCCCG...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCGCGGCAGCCTCGGTGTaGGGGAGCGCCACGTCGCTG +
Preference number: 4 (lower is better)
Translates to: KMHAALNSSRSCCSNCEIAAASV*GSATSL
Trigger: CAGCGACGTGGCGCTCCCGCACACCGAGGCTGCCGC...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGCCTCCTCCTCGGAGCTaGTCACCGACATCTGACGCC +
Preference number: 4 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLPPPRS*SPTSDA
Trigger: GGCGTCAGATGTCGGTGAGCAGCTCCGAGGAGGAGG...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCCCGCTTTCTCGCGCTTaGCCTTGCGCAGGAGCACAG +
Preference number: 4 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTPLSRA*PCAGAQ
Trigger: CTGTGCTCCTGCGCAAGGCCAAGCGCGAGAAAGCGG...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCCCGCTTGGGCCGGTGTaGCTTGGGCGGGGATGGCCG +
Preference number: 4 (lower is better)
Translates to: KMHAALNSSRSCCSNCEIPLGPV*LGRGWP
Trigger: CGGCCATCCCCGCCCAAGCCACACCGGCCCAAGCGG...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TTTCCAGGGCAGACAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCAGGTGCTGCTGGCTCTaGAAATGGCGGACACATCAC +
Preference number: 4 (lower is better)
Translates to: FPGQTSLLWGMAEKPGHSRCCWL*KWRTHH
Trigger: GTGATGTGTCCGCCATTTCCAGAGCCAGCAGCACCT...GCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTGCCCTGGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGACCCAAGGCTTGCTGTaGGGGCTCCGCCCCTTTGTT +
Preference number: 4 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLTQGLL*GLRPFV
Trigger: AACAAAGGGGCGGAGCCCTCACAGCAAGCCTTGGGT...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp TTTCCAGGGCAGACAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCGCGCTCAGACTGCTCTaGCATAAAGCTTGTGCTGCT +
Preference number: 4 (lower is better)
Translates to: FPGQTSLLWGMAEKPGHSALRLL*HKACAA
Trigger: AGCAGCACAAGCTTTATGTCAGAGCAGTCTGAGCGC...GCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTGCCCTGGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGGGCGGGTCAGGGGAGTaGGTGTGGGATCCACCAGGG +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMGGSGE*VWDPPG
Trigger: CCCTGGTGGATCCCACACTCACTCCCCTGACCCGCC...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR GCA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGAGGTCGGGCAGTTCTTaGATAGGGGGAGGCACCGTG +
Preference number: 4 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLRSGSS*IGGGTV
Trigger: CACGGTGCCTCCCCCTATGCAAGAACTGCCCGACCT...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TTTCCAGGGCAGACAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTCTTCTGGCCTCCCTTaGCATTCTGCTCTGAAAGCC +
Preference number: 4 (lower is better)
Translates to: FPGQTSLLWGMAEKPGHSSSGLP*HSALKA
Trigger: GGCTTTCAGAGCAGAATGGCAAGGGAGGCCAGAAGA...GCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTGCCCTGGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGACACCCGGGCGTGCATaGGCATCTGCTGTTCCTCCA +
Preference number: 4 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLTPGRA*ASAVPP
Trigger: TGGAGGAACAGCAGATGCGCATGCACGCCCGGGTGT...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTCTGTGGCGCCGCTCGTaGCTCGCTCGGGACACCCGG +
Preference number: 4 (lower is better)
Translates to: SSAILNSSYYALSRADKSLWRRS*LARDTR
Trigger: CCGGGTGTCCCGAGCGAGGCACGAGCGGCGCCACAG...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTCCGCTTGGGCCGGTGTaGCTTGGGCGGGGATGGCCG +
Preference number: 4 (lower is better)
Translates to: SSAILNSSYYALSRADKSPLGPV*LGRGWP
Trigger: CGGCCATCCCCGCCCAAGCCACACCGGCCCAAGCGG...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGGGCGTGAGGTGCTGCTaGCTCTGGAAATGGCGGACA +
Preference number: 4 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLGVRCC*LWKWRT
Trigger: TGTCCGCCATTTCCAGAGCCAGCAGCACCTCACGCC...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGGGGGTGGCGAGGGTTTaGCGGCCGACAAGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMGVARV*RPTSWA
Trigger: AGCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCC...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCCGCCCATGGCTGGGGTaGCGAGGGTTTGGCGGCCGA +
Preference number: 4 (lower is better)
Translates to: KMHAALNSSRSCCSNCEIRPWLG*RGFGGR
Trigger: TCGGCCGCCAAACCCTCGCCACCCCAGCCATGGGCG...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCAGATATCGCCCATGGCTaGGGTGGCGAGGGTTTGGCG +
Preference number: 4 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPDIAHG*GGEGLA
Trigger: CGCCAAACCCTCGCCACCCCAGCCATGGGCGATATC...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR TCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCATTGCTCTGGGCAGCATaGGAAGCTCACTGTCTGGCT +
Preference number: 4 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSLLWAA*EAHCLA
Trigger: AGCCAGACAGTGAGCTTCTCATGCTGCCCAGAGCAA...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCAGTTCCTGTCCAGTGGTaGACCATGGGAAGCAGTGTC +
Preference number: 4 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSVPVQW*TMGSSV
Trigger: GACACTGCTTCCCATGGTGCACCACTGGACAGGAAC...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCCCTCCCTTGCCATTCTaGTCTGAAAGCCCTGGAGCC +
Preference number: 4 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTPPLPF*SESPGA
Trigger: GGCTCCAGGGCTTTCAGAGCAGAATGGCAAGGGAGG...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTACCTCCCTTGCCATTCTaGTCTGAAAGCCCTGGAGCC +
Preference number: 4 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLPPLPF*SESPGA
Trigger: GGCTCCAGGGCTTTCAGAGCAGAATGGCAAGGGAGG...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCAACACCCGGGCGTGCATaGGCATCTGCTGTTCCTCCA +
Preference number: 4 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPTPGRA*ASAVPP
Trigger: TGGAGGAACAGCAGATGCGCATGCACGCCCGGGTGT...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGTCTCGCGCTTGGCCTTaGGCAGGAGCACAGCCGAGC +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMSRAWP*AGAQPS
Trigger: GCTCGGCTGTGCTCCTGCGCAAGGCCAAGCGCGAGA...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GTTTGGTGTGTGTGTGAACTTGAGGTTTCCTTCCCCTCTCTCTCTCTCTCTCTCTCCTCCTCGGTCAGGTaGCTCAGGTCGGGCAGTTCT +
Preference number: 4 (lower is better)
Translates to: VWCVCELEVSFPSLSLSLSSSVR*LRSGSS
Trigger: AGAACTGCCCGACCTGAGCCACCTGACCGAGGAGGA...GAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACACACACCAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCATTGCGCTCACTCTTCTaGCCTCCCTTGCCATTCTGC +
Preference number: 4 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSLRSLF*PPLPFC
Trigger: GCAGAATGGCAAGGGAGGCCAGAAGAGTGAGCGCAA...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp ACTACTACAGGCAAAACACAAGTTGATTGTCTGTCTCCAACAATGCTCTTGATCCCGCTTGGGCCGGTGTaGCTTGGGCGGGGATGGCCG +
Preference number: 4 (lower is better)
Translates to: TTTGKTQVDCLSPTMLLIPLGPV*LGRGWP
Trigger: CGGCCATCCCCGCCCAAGCCACACCGGCCCAAGCGG...GATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGTCGTGTACTCCGGCGTaGACACGCCCTCCTCCTCGG +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMSCTPA*TRPPPR
Trigger: CCGAGGAGGAGGGCGTGTCCACGCCGGAGTACACGA...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATTCGGACCGGCACCTGTaGGAGCTGTCTTCCGCGGCG +
Preference number: 4 (lower is better)
Translates to: GACSTYTGHKGNYEEYANSDRHL*ELSSAA
Trigger: CGCCGCGGAAGACAGCTCCCACAGGTGCCGGTCCGA...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AAGTGTCTTAGGCTCAAATCCATTCTTAGTCACCATTTTGGGGAGTTGAGAGCACGCCCATGGCTGGGGTaGCGAGGGTTTGGCGGCCGA +
Preference number: 4 (lower is better)
Translates to: KCLRLKSILSHHFGELRARPWLG*RGFGGR
Trigger: TCGGCCGCCAAACCCTCGCCACCCCAGCCATGGGCG...TGCTCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGCGCCCATGGCTGGGGTaGCGAGGGTTTGGCGGCCGA +
Preference number: 4 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVRPWLG*RGFGGR
Trigger: TCGGCCGCCAAACCCTCGCCACCCCAGCCATGGGCG...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTCGCCCATGGCTGGGGTaGCGAGGGTTTGGCGGCCGA +
Preference number: 4 (lower is better)
Translates to: SSAILNSSYYALSRADKSRPWLG*RGFGGR
Trigger: TCGGCCGCCAAACCCTCGCCACCCCAGCCATGGGCG...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR TCA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAACGGAACGTGAGCGGTaGTGTGTGGTTCTTTGCTGC +
Preference number: 4 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLTERER*CVVLCC
Trigger: GCAGCAAAGAACCACACATCACCGCTCACGTTCCGT...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCAGATGATGGCTCTTCCTaGAGTCCCCATCCGTCTGCC +
Preference number: 4 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPDDGSS*SPHPSA
Trigger: GGCAGACGGATGGGGACTTCAGGAAGAGCCATCATC...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCATGTCTGGCTGAGCTGTaGTGTGCTTCTGCTTCTTCG +
Preference number: 4 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSCLAEL*CASASS
Trigger: CGAAGAAGCAGAAGCACATCACAGCTCAGCCAGACA...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTGGCGGGTCAGGGGAGTaGGTGTGGGATCCACCAGGG +
Preference number: 4 (lower is better)
Translates to: SSAILNSSYYALSRADKSGGSGE*VWDPPG
Trigger: CCCTGGTGGATCCCACACTCACTCCCCTGACCCGCC...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR GCA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGTCCTCCTCTTCCTTCTaGCGGTCCATCACTGCCATG +
Preference number: 4 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLSSSSF*RSITAM
Trigger: CATGGCAGTGATGGACCGGCAGAAGGAAGAGGAGGA...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAAGTCGTTCCGCAGCATaGTTTCCGCTTTCTCGCGCT +
Preference number: 4 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLSRSAA*FPLSRA
Trigger: AGCGCGAGAAAGCGGAAAGCATGCTGCGGAACGACT...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTAAGCGCCACGTCGCTGTaGCGCCGCTCGTGCCTCGCT +
Preference number: 4 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVSATSL*RRSCLA
Trigger: AGCGAGGCACGAGCGGCGCCACAGCGACGTGGCGCT...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CAGATACGCTCTTCACTGAGAAGTGATTCTGCAACTACTAGTTTGGGTGATGATTGGCTTGGGCGGGGATaGCCGCACCGACTCGGACTG +
Preference number: 4 (lower is better)
Translates to: QIRSSLRSDSATTSLGDDWLGRG*PHRLGL
Trigger: CAGTCCGAGTCGGTGCGGCCATCCCCGCCCAAGCCA...ATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGTGGCTTGGGCGGGGATaGCCGCACCGACTCGGACTG +
Preference number: 4 (lower is better)
Translates to: AILNSSYYALSRADKSTLWLGRG*PHRLGL
Trigger: CAGTCCGAGTCGGTGCGGCCATCCCCGCCCAAGCCA...CAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCTCGTGTACTCCGGCGTaGACACGCCCTCCTCCTCGG +
Preference number: 4 (lower is better)
Translates to: KMHAALNSSRSCCSNCEISCTPA*TRPPPR
Trigger: CCGAGGAGGAGGGCGTGTCCACGCCGGAGTACACGA...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCAGTCCCCCTCTTTAGATaGCTGCCACGTTACAGGATG +
Preference number: 4 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSVPLFR*LPRYRM
Trigger: CATCCTGTAACGTGGCAGCCATCTAAAGAGGGGGAC...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCAGCCGACAAGCTGGGCTaGCCCCAATCCATCAAGGAA +
Preference number: 4 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPADKLG*PQSIKE
Trigger: TTCCTTGATGGATTGGGGCCAGCCCAGCTTGTCGGC...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp AAGTGTCTTAGGCTCAAATCCATTCTTAGTCACCATTTTGGGGAGTTGAGAGCAGGGGTGGCGAGGGTTTaGCGGCCGACAAGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: KCLRLKSILSHHFGELRAGVARV*RPTSWA
Trigger: AGCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCC...TGCTCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR TCA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGATGTTCAGTGGTGGTTaGTGGGGCTGGCTTTCAGCA +
Preference number: 4 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLMFSGG*WGWLSA
Trigger: TGCTGAAAGCCAGCCCCATCAACCACCACTGAACAT...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp AAGTGTCTTAGGCTCAAATCCATTCTTAGTCACCATTTTGGGGAGTTGAGAGCACGCACCGACTCGGACTaGTCGGAGCTCAGCGAGTCG +
Preference number: 4 (lower is better)
Translates to: KCLRLKSILSHHFGELRARTDSD*SELSES
Trigger: CGACTCGCTGAGCTCCGATCAGTCCGAGTCGGTGCG...TGCTCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGTATGCCGCCTGGGCATaGACGGTGATGGCTGAGGCA +
Preference number: 4 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMYAAWA*TVMAEA
Trigger: TGCCTCAGCCATCACCGTTCATGCCCAGGCGGCATA...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGTGTGTCAGCTGGAGGTaGCTGGGTGGGGCTTCCTTG +
Preference number: 4 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMCVSWR*LGGASL
Trigger: CAAGGAAGCCCCACCCAGTCACCTCCAGCTGACACA...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGTGTGTCAGCTGGAGGTaGCTGGGTGGGGCTTCCTTG +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMCVSWR*LGGASL
Trigger: CAAGGAAGCCCCACCCAGTCACCTCCAGCTGACACA...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCTGTGCTGCTGAGGCGTaGGGTGCTGCTGGCTCTGGA +
Preference number: 4 (lower is better)
Translates to: KMHAALNSSRSCCSNCEICAAEA*GAAGSG
Trigger: TCCAGAGCCAGCAGCACCTCACGCCTCAGCAGCACA...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGAGGAAATCACTGAACTaGCTGTCAGGTCCCACGCGA +
Preference number: 4 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLRKSLN*LSGPTR
Trigger: TCGCGTGGGACCTGACAGTCAGTTCAGTGATTTCCT...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR GCA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTATCTTCTGGCCTCCCTTaGCATTCTGCTCTGAAAGCC +
Preference number: 4 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLSSGLP*HSALKA
Trigger: GGCTTTCAGAGCAGAATGGCAAGGGAGGCCAGAAGA...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCGCCCTTTCTCCAGCCTaGGGGTTTCCCGCCTCTCCT +
Preference number: 4 (lower is better)
Translates to: KMHAALNSSRSCCSNCEIALSPA*GFPASP
Trigger: AGGAGAGGCGGGAAACCCGCAGGCTGGAGAAAGGGC...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATGCCCTTTCTCCAGCCTaGGGGTTTCCCGCCTCTCCT +
Preference number: 4 (lower is better)
Translates to: GACSTYTGHKGNYEEYANALSPA*GFPASP
Trigger: AGGAGAGGCGGGAAACCCGCAGGCTGGAGAAAGGGC...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGGCGGCAGCCTCGGTGTaGGGGAGCGCCACGTCGCTG +
Preference number: 4 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILAAASV*GSATSL
Trigger: CAGCGACGTGGCGCTCCCGCACACCGAGGCTGCCGC...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTCTCGCGCTTGGCCTTaGGCAGGAGCACAGCCGAGC +
Preference number: 4 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVSRAWP*AGAQPS
Trigger: GCTCGGCTGTGCTCCTGCGCAAGGCCAAGCGCGAGA...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTTCTCGCGCTTGGCCTTaGGCAGGAGCACAGCCGAGC +
Preference number: 4 (lower is better)
Translates to: SSAILNSSYYALSRADKSSRAWP*AGAQPS
Trigger: GCTCGGCTGTGCTCCTGCGCAAGGCCAAGCGCGAGA...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATACATCTGACGCCTCTTaGCTCCCCGCTTGGGCCGGT +
Preference number: 4 (lower is better)
Translates to: GACSTYTGHKGNYEEYANTSDAS*LPAWAG
Trigger: ACCGGCCCAAGCGGGGAGGCAAGAGGCGTCAGATGT...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGTCCCTCTTCGCTGCTTaGCTTTCTGGGAACACAGAC +
Preference number: 4 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLSLFAA*LSGNTD
Trigger: GTCTGTGTTCCCAGAAAGCCAAGCAGCGAAGAGGGA...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCATTGCGCTCACTCTTCTaGCCTCCCTTGCCATTCTGC +
Preference number: 4 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPLRSLF*PPLPFC
Trigger: GCAGAATGGCAAGGGAGGCCAGAAGAGTGAGCGCAA...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTTGGCTTGGGCGGGGATaGCCGCACCGACTCGGACTG +
Preference number: 4 (lower is better)
Translates to: SAILNSSYYALSRADKSTWLGRG*PHRLGL
Trigger: CAGTCCGAGTCGGTGCGGCCATCCCCGCCCAAGCCA...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCGTCCCCCTCTTTAGATaGCTGCCACGTTACAGGATG +
Preference number: 4 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTVPLFR*LPRYRM
Trigger: CATCCTGTAACGTGGCAGCCATCTAAAGAGGGGGAC...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGTGAGCGGTGATGTGTaGTTCTTTGCTGCTCTGGCA +
Preference number: 4 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLVSGDV*FFAALA
Trigger: TGCCAGAGCAGCAAAGAACCACACATCACCGCTCAC...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp ACTACTACAGGCAAAACACAAGTTGATTGTCTGTCTCCAACAATGCTCTTGATCTCGGACCGGCACCTGTaGGAGCTGTCTTCCGCGGCG +
Preference number: 4 (lower is better)
Translates to: TTTGKTQVDCLSPTMLLISDRHL*ELSSAA
Trigger: CGCCGCGGAAGACAGCTCCCACAGGTGCCGGTCCGA...GATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTATCGGACCGGCACCTGTaGGAGCTGTCTTCCGCGGCG +
Preference number: 4 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVSDRHL*ELSSAA
Trigger: CGCCGCGGAAGACAGCTCCCACAGGTGCCGGTCCGA...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATACGGCCGTGTCGGACTaGCTGCCGTCATTGTGCTCC +
Preference number: 4 (lower is better)
Translates to: GACSTYTGHKGNYEEYANTAVSD*LPSLCS
Trigger: GGAGCACAATGACGGCAGCCAGTCCGACACGGCCGT...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATGATATCGCCCATGGCTaGGGTGGCGAGGGTTTGGCG +
Preference number: 4 (lower is better)
Translates to: GACSTYTGHKGNYEEYANDIAHG*GGEGLA
Trigger: CGCCAAACCCTCGCCACCCCAGCCATGGGCGATATC...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp TTTCCAGGGCAGACAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCATCCACCAGGGAGGATaGAGGGAACAATTTATACCA +
Preference number: 4 (lower is better)
Translates to: FPGQTSLLWGMAEKPGHSIHQGG*REQFIP
Trigger: TGGTATAAATTGTTCCCTCCATCCTCCCTGGTGGAT...GCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTGCCCTGGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCAAGGGCTGCAGTTCACTaGTCATGTGTAGGCATTCTG +
Preference number: 4 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSRAAVH*SCVGIL
Trigger: CAGAATGCCTACACATGACCAGTGAACTGCAGCCCT...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp ACTACTACAGGCAAAACACAAGTTGATTGTCTGTCTCCAACAATGCTCTTGATCCGCACCGACTCGGACTaGTCGGAGCTCAGCGAGTCG +
Preference number: 4 (lower is better)
Translates to: TTTGKTQVDCLSPTMLLIRTDSD*SELSES
Trigger: CGACTCGCTGAGCTCCGATCAGTCCGAGTCGGTGCG...GATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTACTGCTCACCGACATCTaGCGCCTCTTGCCTCCCCGC +
Preference number: 4 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVLLTDI*RLLPPR
Trigger: GCGGGGAGGCAAGAGGCGTCAGATGTCGGTGAGCAG...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCAGCGCTCAGACTGCTCTaGCATAAAGCTTGTGCTGCT +
Preference number: 4 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPALRLL*HKACAA
Trigger: AGCAGCACAAGCTTTATGTCAGAGCAGTCTGAGCGC...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGGATGATGGCTCTTCCTaGAGTCCCCATCCGTCTGCC +
Preference number: 4 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMDDGSS*SPHPSA
Trigger: GGCAGACGGATGGGGACTTCAGGAAGAGCCATCATC...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCCCCCAGACAATCACCTaGAGAACTTTACCCTGTGGA +
Preference number: 4 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTPQTIT*RTLPCG
Trigger: TCCACAGGGTAAAGTTCTTCAGGTGATTGTCTGGGG...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR TCA 90 bp TTTCCAGGGCAGACAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTCTTCCAACAAGATTTaGGCCACACCCATAAAGCAT +
Preference number: 4 (lower is better)
Translates to: FPGQTSLLWGMAEKPGHSSSNKI*ATPIKH
Trigger: ATGCTTTATGGGTGTGGCTCAAATCTTGTTGGAAGA...GCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTGCCCTGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR GCA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCAGGTCGGGCAGTTCTTaGATAGGGGGAGGCACCGTG +
Preference number: 4 (lower is better)
Translates to: KMHAALNSSRSCCSNCEIRSGSS*IGGGTV
Trigger: CACGGTGCCTCCCCCTATGCAAGAACTGCCCGACCT...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CAGATACGCTCTTCACTGAGAAGTGATTCTGCAACTACTAGTTTGGGTGATGATGCCCTTTCTCCAGCCTaGGGGTTTCCCGCCTCTCCT +
Preference number: 4 (lower is better)
Translates to: QIRSSLRSDSATTSLGDDALSPA*GFPASP
Trigger: AGGAGAGGCGGGAAACCCGCAGGCTGGAGAAAGGGC...ATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTGCGTGCATGCGCATCTaGTGTTCCTCCAGCGGCGCC +
Preference number: 4 (lower is better)
Translates to: SAILNSSYYALSRADKSTACMRI*CSSSGA
Trigger: GGCGCCGCTGGAGGAACAGCAGATGCGCATGCACGC...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTACGGGACACCCGGGCGTaGATGCGCATCTGCTGTTCC +
Preference number: 4 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVRDTRA*MRICCS
Trigger: GGAACAGCAGATGCGCATGCACGCCCGGGTGTCCCG...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCACTTCGTCCTCGTTTTaGTCTGGGCAGCATGAGAAG +
Preference number: 4 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTTSSSF*SGQHEK
Trigger: CTTCTCATGCTGCCCAGAGCAAAACGAGGACGAAGT...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTCAGACTTTCTGGAGTaGCTGTCATTCTCCGGAGAC +
Preference number: 4 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTSDFLE*LSFSGD
Trigger: GTCTCCGGAGAATGACAGGCACTCCAGAAAGTCTGA...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097809.11
CDS-3UTR GCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCACTGTCAAGAGAGGGCTaGAGTTCACTGATGAGCCAC +
Preference number: 4 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPLSREG*SSLMSH
Trigger: GTGGCTCATCAGTGAACTGCAGCCCTCTCTTGACAG...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097809.11
CDS-3UTR CCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCATCCAGTGGTGCACCATaGGAAGCAGTGTCTTGGGAA +
Preference number: 4 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPSSGAP*EAVSWE
Trigger: TTCCCAAGACACTGCTTCCCATGGTGCACCACTGGA...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGTTTGTTCCTGTCCAGTaGTGCACCATGGGAAGCAGT +
Preference number: 4 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLFVPVQ*CTMGSS
Trigger: ACTGCTTCCCATGGTGCACCACTGGACAGGAACAAA...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGCCGCTTTCTCGCGCTTaGCCTTGCGCAGGAGCACAG +
Preference number: 4 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVPLSRA*PCAGAQ
Trigger: CTGTGCTCCTGCGCAAGGCCAAGCGCGAGAAAGCGG...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AAGTGTCTTAGGCTCAAATCCATTCTTAGTCACCATTTTGGGGAGTTGAGAGCACCGCTTTCTCGCGCTTaGCCTTGCGCAGGAGCACAG +
Preference number: 4 (lower is better)
Translates to: KCLRLKSILSHHFGELRAPLSRA*PCAGAQ
Trigger: CTGTGCTCCTGCGCAAGGCCAAGCGCGAGAAAGCGG...TGCTCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCCACTATCTGATGACTTaGCGGACGCGTTATCACAGC +
Preference number: 4 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTHYLMT*RTRYHS
Trigger: GCTGTGATAACGCGTCCGCCAAGTCATCAGATAGTG...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCACGGCCGTGTCGGACTaGCTGCCGTCATTGTGCTCC +
Preference number: 4 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVTAVSD*LPSLCS
Trigger: GGAGCACAATGACGGCAGCCAGTCCGACACGGCCGT...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGGATATCGCCCATGGCTaGGGTGGCGAGGGTTTGGCG +
Preference number: 4 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVDIAHG*GGEGLA
Trigger: CGCCAAACCCTCGCCACCCCAGCCATGGGCGATATC...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp CAGATACGCTCTTCACTGAGAAGTGATTCTGCAACTACTAGTTTGGGTGATGATGATATCGCCCATGGCTaGGGTGGCGAGGGTTTGGCG +
Preference number: 4 (lower is better)
Translates to: QIRSSLRSDSATTSLGDDDIAHG*GGEGLA
Trigger: CGCCAAACCCTCGCCACCCCAGCCATGGGCGATATC...ATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCCTCCGGGGGCAAGGTaGTGCATAGAACACAGGGTT +
Preference number: 4 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMPPGAR*CIEHRV
Trigger: AACCCTGTGTTCTATGCACCACCTTGCCCCCGGAGG...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGCTGCGGTACCTAGTCTaGTACTCCTCCTCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMLRYLV*YSSSFL
Trigger: GAGGAAGGAGGAGGAGTATCAGACTAGGTACCGCAG...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATACTGCTCACCGACATCTaGCGCCTCTTGCCTCCCCGC +
Preference number: 4 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKILLTDI*RLLPPR
Trigger: GCGGGGAGGCAAGAGGCGTCAGATGTCGGTGAGCAG...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCAATGAACGGTGATGGCTaGGGCAGAGGTAGTGAAGAT +
Preference number: 4 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPMNGDG*GRGSED
Trigger: ATCTTCACTACCTCTGCCTCAGCCATCACCGTTCAT...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGACGGAACGTGAGCGGTaGTGTGTGGTTCTTTGCTGC +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMTERER*CVVLCC
Trigger: GCAGCAAAGAACCACACATCACCGCTCACGTTCCGT...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTATGGCGGACACATCACTaGCATCACTATCTGATGACT +
Preference number: 4 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLWRTHH*HHYLMT
Trigger: AGTCATCAGATAGTGATGTCAGTGATGTGTCCGCCA...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGTTGCTCTGGGCAGCATaGGAAGCTCACTGTCTGGCT +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMLLWAA*EAHCLA
Trigger: AGCCAGACAGTGAGCTTCTCATGCTGCCCAGAGCAA...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp GTTTGGTGTGTGTGTGAACTTGAGGTTTCCTTCCCCTCTCTCTCTCTCTCTCTCCTGCCGGTCCATCACTaGCATGATAATGTTCCTCTC +
Preference number: 4 (lower is better)
Translates to: VWCVCELEVSFPSLSLSLLPVHH*HDNVPL
Trigger: GAGAGGAACATTATCATGGCAGTGATGGACCGGCAG...GAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACACACACCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGTCCTCCTCTTCCTTCTaGCGGTCCATCACTGCCATG +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMSSSSF*RSITAM
Trigger: CATGGCAGTGATGGACCGGCAGAAGGAAGAGGAGGA...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGTGCACAGAACTTGGTaGGACAATAGGAGCAGAGAT +
Preference number: 4 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLVHRTW*DNRSRD
Trigger: ATCTCTGCTCCTATTGTCGCACCAAGTTCTGTGCAC...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGAGTCGTTCCGCAGCATaGTTTCCGCTTTCTCGCGCT +
Preference number: 4 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMSRSAA*FPLSRA
Trigger: AGCGCGAGAAAGCGGAAAGCATGCTGCGGAACGACT...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGGACGTTTCCCTGCTATaGCACGTGGCAGGATCCAAC +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMDVSLL*HVAGSN
Trigger: GTTGGATCCTGCCACGTGGCATAGCAGGGAAACGTC...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTGCCACGTTACAGGATaGGAACTAATAGGCGACGTT +
Preference number: 4 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTCHVTG*ELIGDV
Trigger: AACGTCGCCTATTAGTTCGCATCCTGTAACGTGGCA...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCAAACTTCTTCGTTTGTTaGTCCCGGCAGGGGTTTACC +
Preference number: 4 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPNFFVC*SRQGFT
Trigger: GGTAAACCCCTGCCGGGAGCAACAAACGAAGAAGTT...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCATGGCTGCCGTCATTGTaGTCCAGTGTATATATCTCT +
Preference number: 4 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSWLPSL*SSVYIS
Trigger: AGAGATATATACACTGGAGCACAATGACGGCAGCCA...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCGCTGTGATGTGCTTCTaGTTCTTCGAGACACAATGG +
Preference number: 4 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTAVMCF*FFETQW
Trigger: CCATTGTGTCTCGAAGAAGCAGAAGCACATCACAGC...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGTTGCTCTTGGGATTaGGTATCCCCTTCTAGAAAG +
Preference number: 4 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLGCSWD*VSPSRK
Trigger: CTTTCTAGAAGGGGATACGCAATCCCAAGAGCAACC...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCGGTTGCTCTTGGGATTaGGTATCCCCTTCTAGAAAG +
Preference number: 4 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTGCSWD*VSPSRK
Trigger: CTTTCTAGAAGGGGATACGCAATCCCAAGAGCAACC...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGGTTCTGATACTAGAGTaGTCGCTCGACCGGGAGCGA +
Preference number: 4 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMVLILE*SLDRER
Trigger: TCGCTCCCGGTCGAGCGAGCACTCTAGTATCAGAAC...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGACCTTGATCGCTCTTaGAGCCGAGCTTTCTTTTCT +
Preference number: 4 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLDLDRS*SRAFFS
Trigger: AGAAAAGAAAGCTCGGCTCCAAGAGCGATCAAGGTC...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GTTTGGTGTGTGTGTGAACTTGAGGTTTCCTTCCCCTCTCTCTCTCTCTCTCTCTTTGTTCCTGTCCAGTaGTGCACCATGGGAAGCAGT +
Preference number: 4 (lower is better)
Translates to: VWCVCELEVSFPSLSLSLFVPVQ*CTMGSS
Trigger: ACTGCTTCCCATGGTGCACCACTGGACAGGAACAAA...GAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACACACACCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TTGTTCTGTCATACGAAGCCATGTTTTAAACAACAATTGGGACACAATTATCGAAGCGCCACGTCGCTGTaGCGCCGCTCGTGCCTCGCT +
Preference number: 4 (lower is better)
Translates to: LFCHTKPCFKQQLGHNYRSATSL*RRSCLA
Trigger: AGCGAGGCACGAGCGGCGCCACAGCGACGTGGCGCT...TCGATAATTGTGTCCCAATTGTTGTTTAAAACATGGCTTCGTATGACAGAACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGCAAAGGAACTTGAACTaGACTCCAGGGGAGGGTGGG +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMQRNLN*TPGEGG
Trigger: CCCACCCTCCCCTGGAGTCCAGTTCAAGTTCCTTTG...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCATCCTGTACTCTTGGCTaGTCCCACACAGTAATTTCT +
Preference number: 4 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSSCTLG*SHTVIS
Trigger: AGAAATTACTGTGTGGGACCAGCCAAGAGTACAGGA...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GTTTGGTGTGTGTGTGAACTTGAGGTTTCCTTCCCCTCTCTCTCTCTCTCTCTCCTCGTCCTGTACTCTTaGCTGGTCCCACACAGTAAT +
Preference number: 4 (lower is better)
Translates to: VWCVCELEVSFPSLSLSLLVLYS*LVPHSN
Trigger: ATTACTGTGTGGGACCAGCCAAGAGTACAGGACGAG...GAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACACACACCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCCTGGAGCTTTCTCCGTaGATATGCCGCCTGGGCATG +
Preference number: 4 (lower is better)
Translates to: KMHAALNSSRSCCSNCEILELSP*ICRLGM
Trigger: CATGCCCAGGCGGCATATCCACGGAGAAAGCTCCAG...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCAGACCTTCGTGTTGGATaGATTTCATCTAAGCTCCTC +
Preference number: 4 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSDLRVG*ISSKLL
Trigger: GAGGAGCTTAGATGAAATCCATCCAACACGAAGGTC...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGAGGTGCTGCTGGCTCTaGAAATGGCGGACACATCAC +
Preference number: 4 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMRCCWL*KWRTHH
Trigger: GTGATGTGTCCGCCATTTCCAGAGCCAGCAGCACCT...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTACGGCCGTGTCGGACTaGCTGCCGTCATTGTGCTCC +
Preference number: 4 (lower is better)
Translates to: SAILNSSYYALSRADKSTTAVSD*LPSLCS
Trigger: GGAGCACAATGACGGCAGCCAGTCCGACACGGCCGT...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGTGGCCGGACTCTGTCTaGCTGAGCTGTGATGTGCTT +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMWPDSV*LSCDVL
Trigger: AAGCACATCACAGCTCAGCCAGACAGAGTCCGGCCA...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCGCCGACAAGCTGGGCTaGCCCCAATCCATCAAGGAA +
Preference number: 4 (lower is better)
Translates to: KMHAALNSSRSCCSNCEIADKLG*PQSIKE
Trigger: TTCCTTGATGGATTGGGGCCAGCCCAGCTTGTCGGC...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTTGGCGGCCGACAAGCTaGGCTGGCCCCAATCCATCA +
Preference number: 4 (lower is better)
Translates to: SAILNSSYYALSRADKSTWRPTS*AGPNPS
Trigger: TGATGGATTGGGGCCAGCCCAGCTTGTCGGCCGCCA...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGGGGGTGGCGAGGGTTTaGCGGCCGACAAGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILGVARV*RPTSWA
Trigger: AGCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCC...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCAATCCACCAGGGAGGATaGAGGGAACAATTTATACCA +
Preference number: 4 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSIHQGG*REQFIP
Trigger: TGGTATAAATTGTTCCCTCCATCCTCCCTGGTGGAT...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR TCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTTATGCCGCCTGGGCATaGACGGTGATGGCTGAGGCA +
Preference number: 4 (lower is better)
Translates to: SAILNSSYYALSRADKSTYAAWA*TVMAEA
Trigger: TGCCTCAGCCATCACCGTTCATGCCCAGGCGGCATA...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGTCGGGTTGGAGAACGTaGCCTTCGTGTTGGATGGAT +
Preference number: 4 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMSGWRT*PSCWMD
Trigger: ATCCATCCAACACGAAGGTCACGTTCTCCAACCCGA...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTTGTGTCAGCTGGAGGTaGCTGGGTGGGGCTTCCTTG +
Preference number: 4 (lower is better)
Translates to: SAILNSSYYALSRADKSTCVSWR*LGGASL
Trigger: CAAGGAAGCCCCACCCAGTCACCTCCAGCTGACACA...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGGATGATGGCTCTTCCTaGAGTCCCCATCCGTCTGCC +
Preference number: 4 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVDDGSS*SPHPSA
Trigger: GGCAGACGGATGGGGACTTCAGGAAGAGCCATCATC...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGTGTCTGGCTGAGCTGTaGTGTGCTTCTGCTTCTTCG +
Preference number: 4 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMCLAEL*CASASS
Trigger: CGAAGAAGCAGAAGCACATCACAGCTCAGCCAGACA...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGAGGAAATCACTGAACTaGCTGTCAGGTCCCACGCGA +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMRKSLN*LSGPTR
Trigger: TCGCGTGGGACCTGACAGTCAGTTCAGTGATTTCCT...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR GCA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTAACACCCGGGCGTGCATaGGCATCTGCTGTTCCTCCA +
Preference number: 4 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVTPGRA*ASAVPP
Trigger: TGGAGGAACAGCAGATGCGCATGCACGCCCGGGTGT...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCGACGTTTCCCTGCTATaGCACGTGGCAGGATCCAAC +
Preference number: 4 (lower is better)
Translates to: KMHAALNSSRSCCSNCEIDVSLL*HVAGSN
Trigger: GTTGGATCCTGCCACGTGGCATAGCAGGGAAACGTC...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTTACAATCAGCTGGTaGCCCACCTTATCATACCAC +
Preference number: 4 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTFTISW*PTLSYH
Trigger: GTGGTATGATAAGGTGGGGCACCAGCTGATTGTAAA...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp ACTACTACAGGCAAAACACAAGTTGATTGTCTGTCTCCAACAATGCTCTTGATCTCCTCCTCGGTCAGGTaGCTCAGGTCGGGCAGTTCT +
Preference number: 4 (lower is better)
Translates to: TTTGKTQVDCLSPTMLLISSSVR*LRSGSS
Trigger: AGAACTGCCCGACCTGAGCCACCTGACCGAGGAGGA...GATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCATCTGAAAATGTTCAGTaGTGGTTGATGGGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPSENVQ*WLMGLA
Trigger: AGCCAGCCCCATCAACCACCACTGAACATTTTCAGA...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GTTTGGTGTGTGTGTGAACTTGAGGTTTCCTTCCCCTCTCTCTCTCTCTCTCTCGACCTTGATCGCTCTTaGAGCCGAGCTTTCTTTTCT +
Preference number: 4 (lower is better)
Translates to: VWCVCELEVSFPSLSLSLDLDRS*SRAFFS
Trigger: AGAAAAGAAAGCTCGGCTCCAAGAGCGATCAAGGTC...GAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACACACACCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGTCCAGTGGTGCACCATaGGAAGCAGTGTCTTGGGAA +
Preference number: 4 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMSSGAP*EAVSWE
Trigger: TTCCCAAGACACTGCTTCCCATGGTGCACCACTGGA...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCAGCTCCAGGGCTGGTTaGAGAAATAACAGAAATGGA +
Preference number: 4 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTSSRAG*RNNRNG
Trigger: TCCATTTCTGTTATTTCTCCAACCAGCCCTGGAGCT...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGAGCTCCAGGGCTGGTTaGAGAAATAACAGAAATGGA +
Preference number: 4 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLSSRAG*RNNRNG
Trigger: TCCATTTCTGTTATTTCTCCAACCAGCCCTGGAGCT...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CAGATACGCTCTTCACTGAGAAGTGATTCTGCAACTACTAGTTTGGGTGATGATCTGGAGCTTTCTCCGTaGATATGCCGCCTGGGCATG +
Preference number: 4 (lower is better)
Translates to: QIRSSLRSDSATTSLGDDLELSP*ICRLGM
Trigger: CATGCCCAGGCGGCATATCCACGGAGAAAGCTCCAG...ATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp ACTACTACAGGCAAAACACAAGTTGATTGTCTGTCTCCAACAATGCTCTTGATCGGCGTGAGGTGCTGCTaGCTCTGGAAATGGCGGACA +
Preference number: 4 (lower is better)
Translates to: TTTGKTQVDCLSPTMLLIGVRCC*LWKWRT
Trigger: TGTCCGCCATTTCCAGAGCCAGCAGCACCTCACGCC...GATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCCCTCCGGGGGCAAGGTaGTGCATAGAACACAGGGTT +
Preference number: 4 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVPPGAR*CIEHRV
Trigger: AACCCTGTGTTCTATGCACCACCTTGCCCCCGGAGG...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
3UTR CAA 72 bp TCCCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCTATTaGCAAGAAGTGTCAGTGGCTCTCACTAGCATGTCG +
Preference number: 4 (lower is better)
Translates to: SLSLSLSLSLSY*QEVSVALTSMS
Trigger: CGACATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAGAGAGAGAGAGAGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR TCA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATAACCCAAGGCTTGCTGTaGGGGCTCCGCCCCTTTGTT +
Preference number: 4 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKITQGLL*GLRPFV
Trigger: AACAAAGGGGCGGAGCCCTCACAGCAAGCCTTGGGT...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCCTGCGGTACCTAGTCTaGTACTCCTCCTCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVLRYLV*YSSSFL
Trigger: GAGGAAGGAGGAGGAGTATCAGACTAGGTACCGCAG...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGTTCCTCCAACCACCTTaGGACCCAATAATGCACCTG +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMFLQPP*DPIMHL
Trigger: CAGGTGCATTATTGGGTCTCAAGGTGGTTGGAGGAA...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGATGAACGGTGATGGCTaGGGCAGAGGTAGTGAAGAT +
Preference number: 4 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMMNGDG*GRGSED
Trigger: ATCTTCACTACCTCTGCCTCAGCCATCACCGTTCAT...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACGGAACGTGAGCGGTaGTGTGTGGTTCTTTGCTGC +
Preference number: 4 (lower is better)
Translates to: SSAILNSSYYALSRADKSTERER*CVVLCC
Trigger: GCAGCAAAGAACCACACATCACCGCTCACGTTCCGT...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGTTTCCGTACTCCTCTaGATGGTGCTTTTTAACTTC +
Preference number: 4 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLVSVLL*MVLFNF
Trigger: GAAGTTAAAAAGCACCATTCAGAGGAGTACGGAAAC...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCAGGAAATCACTGAACTaGCTGTCAGGTCCCACGCGA +
Preference number: 4 (lower is better)
Translates to: KMHAALNSSRSCCSNCEIRKSLN*LSGPTR
Trigger: TCGCGTGGGACCTGACAGTCAGTTCAGTGATTTCCT...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR TCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCCCCAGACAATCACCTaGAGAACTTTACCCTGTGGA +
Preference number: 4 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMPQTIT*RTLPCG
Trigger: TCCACAGGGTAAAGTTCTTCAGGTGATTGTCTGGGG...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR TCA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTATCTTCCAACAAGATTTaGGCCACACCCATAAAGCAT +
Preference number: 4 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLSSNKI*ATPIKH
Trigger: ATGCTTTATGGGTGTGGCTCAAATCTTGTTGGAAGA...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR TCA 90 bp GTTTGGTGTGTGTGTGAACTTGAGGTTTCCTTCCCCTCTCTCTCTCTCTCTCTCCCTTTCTCGTTCTGGTaGATGCAAACTAGTATCTGG +
Preference number: 4 (lower is better)
Translates to: VWCVCELEVSFPSLSLSLPFSFW*MQTSIW
Trigger: CCAGATACTAGTTTGCATTCACCAGAACGAGAAAGG...GAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACACACACCAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp GCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGGACGCATGCTGGATTTaGATCCTGGGGCTAGCAGGT +
Preference number: 4 (lower is better)
Translates to: AILNSSYYALSRADKSTLDACWI*ILGLAG
Trigger: ACCTGCTAGCCCCAGGATTCAAATCCAGCATGCGTC...CAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097809.11
CDS-3UTR GCA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCGTTCCTGTCCAGTGGTaGACCATGGGAAGCAGTGTC +
Preference number: 4 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVVPVQW*TMGSSV
Trigger: GACACTGCTTCCCATGGTGCACCACTGGACAGGAAC...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCCTCCCTTGCCATTCTaGTCTGAAAGCCCTGGAGCC +
Preference number: 4 (lower is better)
Translates to: SAILNSSYYALSRADKSTPPLPF*SESPGA
Trigger: GGCTCCAGGGCTTTCAGAGCAGAATGGCAAGGGAGG...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATGCGTGCATGCGCATCTaGTGTTCCTCCAGCGGCGCC +
Preference number: 4 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYACMRI*CSSSGA
Trigger: GGCGCCGCTGGAGGAACAGCAGATGCGCATGCACGC...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGCCTCCTCCTCGGAGCTaGTCACCGACATCTGACGCC +
Preference number: 4 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILPPPRS*SPTSDA
Trigger: GGCGTCAGATGTCGGTGAGCAGCTCCGAGGAGGAGG...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGAACTTCTTCGTTTGTTaGTCCCGGCAGGGGTTTACC +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMNFFVC*SRQGFT
Trigger: GGTAAACCCCTGCCGGGAGCAACAAACGAAGAAGTT...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAATCTTTGTAGCTTTTTaGTGGAGCTTTCTCCGTGGA +
Preference number: 4 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLIFVAF*WSFLRG
Trigger: TCCACGGAGAAAGCTCCAGCAAAAAGCTACAAAGAT...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AAGTGTCTTAGGCTCAAATCCATTCTTAGTCACCATTTTGGGGAGTTGAGAGCAGTTCTGATACTAGAGTaGTCGCTCGACCGGGAGCGA +
Preference number: 4 (lower is better)
Translates to: KCLRLKSILSHHFGELRAVLILE*SLDRER
Trigger: TCGCTCCCGGTCGAGCGAGCACTCTAGTATCAGAAC...TGCTCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp ACTACTACAGGCAAAACACAAGTTGATTGTCTGTCTCCAACAATGCTCTTGATCCCGGGGGCAAGGTGGTaGATAGAACACAGGGTTCTG +
Preference number: 4 (lower is better)
Translates to: TTTGKTQVDCLSPTMLLIPGARW*IEHRVL
Trigger: CAGAACCCTGTGTTCTATGCACCACCTTGCCCCCGG...GATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTCTCCAGTTTCTGTCTaGGCCTCCCTCTTCGCTGCT +
Preference number: 4 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVSPVSV*ASLFAA
Trigger: AGCAGCGAAGAGGGAGGCCCAGACAGAAACTGGAGA...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AAGTGTCTTAGGCTCAAATCCATTCTTAGTCACCATTTTGGGGAGTTGAGAGCATCTCCAGTTTCTGTCTaGGCCTCCCTCTTCGCTGCT +
Preference number: 4 (lower is better)
Translates to: KCLRLKSILSHHFGELRASPVSV*ASLFAA
Trigger: AGCAGCGAAGAGGGAGGCCCAGACAGAAACTGGAGA...TGCTCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGCGCCCTGGTAACGCCTaGCTTCCTCTCCGATTTTTC +
Preference number: 4 (lower is better)
Translates to: AILNSSYYALSRADKSTLRPGNA*LPLRFF
Trigger: GAAAAATCGGAGAGGAAGCCAGGCGTTACCAGGGCG...CAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AAGTGTCTTAGGCTCAAATCCATTCTTAGTCACCATTTTGGGGAGTTGAGAGCATTGCGCTCACTCTTCTaGCCTCCCTTGCCATTCTGC +
Preference number: 4 (lower is better)
Translates to: KCLRLKSILSHHFGELRALRSLF*PPLPFC
Trigger: GCAGAATGGCAAGGGAGGCCAGAAGAGTGAGCGCAA...TGCTCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCTCGTCCTGTACTCTTaGCTGGTCCCACACAGTAAT +
Preference number: 4 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMLVLYS*LVPHSN
Trigger: ATTACTGTGTGGGACCAGCCAAGAGTACAGGACGAG...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGCTTCGGGAGGCATCATaGTGTCGGGTTGGAGAACGT +
Preference number: 4 (lower is better)
Translates to: AILNSSYYALSRADKSTLLREAS*CRVGER
Trigger: ACGTTCTCCAACCCGACACCATGATGCCTCCCGAAG...CAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGCACTATCTGATGACTTaGCGGACGCGTTATCACAGC +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMHYLMT*RTRYHS
Trigger: GCTGTGATAACGCGTCCGCCAAGTCATCAGATAGTG...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGAGGTGCTGCTGGCTCTaGAAATGGCGGACACATCAC +
Preference number: 4 (lower is better)
Translates to: AILNSSYYALSRADKSTLRCCWL*KWRTHH
Trigger: GTGATGTGTCCGCCATTTCCAGAGCCAGCAGCACCT...CAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GTTTGGTGTGTGTGTGAACTTGAGGTTTCCTTCCCCTCTCTCTCTCTCTCTCTCTTCTTCGAGACACAATaGCTACCACTTTGGCACTCA +
Preference number: 4 (lower is better)
Translates to: VWCVCELEVSFPSLSLSLFFETQ*LPLWHS
Trigger: TGAGTGCCAAAGTGGTAGCCATTGTGTCTCGAAGAA...GAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACACACACCAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGGCCGGACTCTGTCTaGCTGAGCTGTGATGTGCTT +
Preference number: 4 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVWPDSV*LSCDVL
Trigger: AAGCACATCACAGCTCAGCCAGACAGAGTCCGGCCA...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCACCGTACTCCTCTGAATaGTGCTTTTTAACTTCTTGT +
Preference number: 4 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSPYSSE*CFLTSC
Trigger: ACAAGAAGTTAAAAAGCACCATTCAGAGGAGTACGG...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATCCTTCTAGAAAGGCATaGTGGGAGAACCCTGTCTGC +
Preference number: 4 (lower is better)
Translates to: GACSTYTGHKGNYEEYANPSRKA*WENPVC
Trigger: GCAGACAGGGTTCTCCCACCATGCCTTTCTAGAAGG...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTATGTTCAGTGGTGGTTaGTGGGGCTGGCTTTCAGCA +
Preference number: 4 (lower is better)
Translates to: SSAILNSSYYALSRADKSMFSGG*WGWLSA
Trigger: TGCTGAAAGCCAGCCCCATCAACCACCACTGAACAT...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGACCCAAGGCTTGCTGTaGGGGCTCCGCCCCTTTGTT +
Preference number: 4 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILTQGLL*GLRPFV
Trigger: AACAAAGGGGCGGAGCCCTCACAGCAAGCCTTGGGT...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTACTGCGGTACCTAGTCTaGTACTCCTCCTCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVLRYLV*YSSSFL
Trigger: GAGGAAGGAGGAGGAGTATCAGACTAGGTACCGCAG...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCAGGCCTTTCCATCTTCTaGGATTCAAAGGAACTTGAA +
Preference number: 4 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPGLSIF*DSKELE
Trigger: TTCAAGTTCCTTTGAATCTCAGAAGATGGAAAGGCC...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATATGAACGGTGATGGCTaGGGCAGAGGTAGTGAAGAT +
Preference number: 4 (lower is better)
Translates to: GACSTYTGHKGNYEEYANMNGDG*GRGSED
Trigger: ATCTTCACTACCTCTGCCTCAGCCATCACCGTTCAT...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGAGATGTCACTATCACTaGTTCGCTGAGATCTTTGTA +
Preference number: 4 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLRCHYH*FAEIFV
Trigger: TACAAAGATCTCAGCGAATCAGTGATAGTGACATCT...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CAGATACGCTCTTCACTGAGAAGTGATTCTGCAACTACTAGTTTGGGTGATGATTCGGGTTGGAGAACGTaGCCTTCGTGTTGGATGGAT +
Preference number: 4 (lower is better)
Translates to: QIRSSLRSDSATTSLGDDSGWRT*PSCWMD
Trigger: ATCCATCCAACACGAAGGTCACGTTCTCCAACCCGA...ATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCATCACAGCTTCTGTACTaGTCTTTATGTATGTTGTAC +
Preference number: 4 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSSQLLY*SLCMLY
Trigger: GTACAACATACATAAAGATCAGTACAGAAGCTGTGA...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATTGTGCTGCTGAGGCGTaGGGTGCTGCTGGCTCTGGA +
Preference number: 4 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYCAAEA*GAAGSG
Trigger: TCCAGAGCCAGCAGCACCTCACGCCTCAGCAGCACA...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCGCGCTCAGACTGCTCTaGCATAAAGCTTGTGCTGCT +
Preference number: 4 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVALRLL*HKACAA
Trigger: AGCAGCACAAGCTTTATGTCAGAGCAGTCTGAGCGC...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCAGTTTCCGTACTCCTCTaGATGGTGCTTTTTAACTTC +
Preference number: 4 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPVSVLL*MVLFNF
Trigger: GAAGTTAAAAAGCACCATTCAGAGGAGTACGGAAAC...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCCCCCTAATGACCGGTTaGTCGGTTGCTCTTGGGATT +
Preference number: 4 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVPLMTG*SVALGI
Trigger: AATCCCAAGAGCAACCGATCAACCGGTCATTAGGGG...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATCTGCCGGTCCATCACTaGCATGATAATGTTCCTCTC +
Preference number: 4 (lower is better)
Translates to: GACSTYTGHKGNYEEYANLPVHH*HDNVPL
Trigger: GAGAGGAACATTATCATGGCAGTGATGGACCGGCAG...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCCATTTCTTGGTGTTTTaGAGGCAGCAGGCTTCGCCA +
Preference number: 4 (lower is better)
Translates to: KMHAALNSSRSCCSNCEIHFLVF*RQQASP
Trigger: TGGCGAAGCCTGCTGCCTGCAAAACACCAAGAAATG...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTAGTTCCTGTCCAGTGGTaGACCATGGGAAGCAGTGTC +
Preference number: 4 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVVPVQW*TMGSSV
Trigger: GACACTGCTTCCCATGGTGCACCACTGGACAGGAAC...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CAGATACGCTCTTCACTGAGAAGTGATTCTGCAACTACTAGTTTGGGTGATGATTCTTCTGGCCTCCCTTaGCATTCTGCTCTGAAAGCC +
Preference number: 4 (lower is better)
Translates to: QIRSSLRSDSATTSLGDDSSGLP*HSALKA
Trigger: GGCTTTCAGAGCAGAATGGCAAGGGAGGCCAGAAGA...ATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATACATCTGACGCCTCTTaGCTCCCCGCTTGGGCCGGT +
Preference number: 4 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYTSDAS*LPAWAG
Trigger: ACCGGCCCAAGCGGGGAGGCAAGAGGCGTCAGATGT...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp ACTACTACAGGCAAAACACAAGTTGATTGTCTGTCTCCAACAATGCTCTTGATCGACGTTTCCCTGCTATaGCACGTGGCAGGATCCAAC +
Preference number: 4 (lower is better)
Translates to: TTTGKTQVDCLSPTMLLIDVSLL*HVAGSN
Trigger: GTTGGATCCTGCCACGTGGCATAGCAGGGAAACGTC...GATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATAACTTCTTCGTTTGTTaGTCCCGGCAGGGGTTTACC +
Preference number: 4 (lower is better)
Translates to: GACSTYTGHKGNYEEYANNFFVC*SRQGFT
Trigger: GGTAAACCCCTGCCGGGAGCAACAAACGAAGAAGTT...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGTGTGTGGTTCTTTGCTaGTCTGGCACTGTTAACGTG +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMCVVLC*SGTVNV
Trigger: CACGTTAACAGTGCCAGAGCAGCAAAGAACCACACA...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTGGGCTTCCTTGTCGGTaGGTTCTGTCTGGCTCTGAT +
Preference number: 4 (lower is better)
Translates to: SAILNSSYYALSRADKSTGLPCR*VLSGSD
Trigger: ATCAGAGCCAGACAGAACGCACCGACAAGGAAGCCC...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081544.14
CDS-3UTR GCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGCCAGACCCTGTTGTCTaGTTAAATCGGTGTACCTTC +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMPDPVV*LNRCTF
Trigger: GAAGGTACACCGATTTAAGCAGACAACAGGGTCTGG...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGCTGGGGCGCTCAGACTaGTCTGACATAAAGCTTGTG +
Preference number: 4 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVLGRSD*SDIKLV
Trigger: CACAAGCTTTATGTCAGAGCAGTCTGAGCGCCCCAG...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCCCATCCGTCTGCCTTaGATTTTGGGGGTAAATGAA +
Preference number: 4 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMPIRLP*ILGVNE
Trigger: TTCATTTACCCCCAAAATGCAAGGCAGACGGATGGG...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGGCTGTGATGTGCTTCTaGTTCTTCGAGACACAATGG +
Preference number: 4 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMAVMCF*FFETQW
Trigger: CCATTGTGTCTCGAAGAAGCAGAAGCACATCACAGC...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTCCCTCTTCGCTGCTTaGCTTTCTGGGAACACAGAC +
Preference number: 4 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVSLFAA*LSGNTD
Trigger: GTCTGTGTTCCCAGAAAGCCAAGCAGCGAAGAGGGA...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTCCCTCTTCGCTGCTTaGCTTTCTGGGAACACAGAC +
Preference number: 4 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVSLFAA*LSGNTD
Trigger: GTCTGTGTTCCCAGAAAGCCAAGCAGCGAAGAGGGA...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTTCTCCAGTTTCTGTCTaGGCCTCCCTCTTCGCTGCT +
Preference number: 4 (lower is better)
Translates to: SAILNSSYYALSRADKSTSPVSV*ASLFAA
Trigger: AGCAGCGAAGAGGGAGGCCCAGACAGAAACTGGAGA...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTTCCAGTGGTGCACCATaGGAAGCAGTGTCTTGGGAA +
Preference number: 4 (lower is better)
Translates to: SSAILNSSYYALSRADKSSSGAP*EAVSWE
Trigger: TTCCCAAGACACTGCTTCCCATGGTGCACCACTGGA...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp ACTACTACAGGCAAAACACAAGTTGATTGTCTGTCTCCAACAATGCTCTTGATCCAAAGGAACTTGAACTaGACTCCAGGGGAGGGTGGG +
Preference number: 4 (lower is better)
Translates to: TTTGKTQVDCLSPTMLLIQRNLN*TPGEGG
Trigger: CCCACCCTCCCCTGGAGTCCAGTTCAAGTTCCTTTG...GATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTATTTGTAGCTTTTTGCTaGAGCTTTCTCCGTGGATAT +
Preference number: 4 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLFVAFC*SFLRGY
Trigger: ATATCCACGGAGAAAGCTCCAGCAAAAAGCTACAAA...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCATATGTATGTTGTACTTaGAGTATTGCTCGTGGTCAA +
Preference number: 4 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSYVCCT*SIARGQ
Trigger: TTGACCACGAGCAATACTCCAAGTACAACATACATA...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATTGGCGGCCGACAAGCTaGGCTGGCCCCAATCCATCA +
Preference number: 4 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYWRPTS*AGPNPS
Trigger: TGATGGATTGGGGCCAGCCCAGCTTGTCGGCCGCCA...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCAAAGAACTTTACCCTGTaGACTTTCATCAAAAACCAG +
Preference number: 4 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSKNFTL*TFIKNQ
Trigger: CTGGTTTTTGATGAAAGTCCACAGGGTAAAGTTCTT...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR TCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTATGTTCAGTGGTGGTTaGTGGGGCTGGCTTTCAGCA +
Preference number: 4 (lower is better)
Translates to: SAILNSSYYALSRADKSTMFSGG*WGWLSA
Trigger: TGCTGAAAGCCAGCCCCATCAACCACCACTGAACAT...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTTTCCTCCAACCACCTTaGGACCCAATAATGCACCTG +
Preference number: 4 (lower is better)
Translates to: SSAILNSSYYALSRADKSFLQPP*DPIMHL
Trigger: CAGGTGCATTATTGGGTCTCAAGGTGGTTGGAGGAA...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CAGATACGCTCTTCACTGAGAAGTGATTCTGCAACTACTAGTTTGGGTGATGATTTCCTCCAACCACCTTaGGACCCAATAATGCACCTG +
Preference number: 4 (lower is better)
Translates to: QIRSSLRSDSATTSLGDDFLQPP*DPIMHL
Trigger: CAGGTGCATTATTGGGTCTCAAGGTGGTTGGAGGAA...ATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAATCAACCTCATAATCTaGGATGTCACTATCACTGAT +
Preference number: 4 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLINLII*DVTITD
Trigger: ATCAGTGATAGTGACATCTCAGATTATGAGGTTGAT...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGATCAACCTCATAATCTaGGATGTCACTATCACTGAT +
Preference number: 4 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLINLII*DVTITD
Trigger: ATCAGTGATAGTGACATCTCAGATTATGAGGTTGAT...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGTCACAGCTTCTGTACTaGTCTTTATGTATGTTGTAC +
Preference number: 4 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLSQLLY*SLCMLY
Trigger: GTACAACATACATAAAGATCAGTACAGAAGCTGTGA...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATTGGCGGACACATCACTaGCATCACTATCTGATGACT +
Preference number: 4 (lower is better)
Translates to: GACSTYTGHKGNYEEYANWRTHH*HHYLMT
Trigger: AGTCATCAGATAGTGATGTCAGTGATGTGTCCGCCA...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTATGTCTGGCTGAGCTGTaGTGTGCTTCTGCTTCTTCG +
Preference number: 4 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVCLAEL*CASASS
Trigger: CGAAGAAGCAGAAGCACATCACAGCTCAGCCAGACA...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATCATCAAGGAAATCACTaGACTGACTGTCAGGTCCCA +
Preference number: 4 (lower is better)
Translates to: GACSTYTGHKGNYEEYANHQGNH*TDCQVP
Trigger: TGGGACCTGACAGTCAGTTCAGTGATTTCCTTGATG...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGCCTTTCTCGTTCTGGTaGATGCAAACTAGTATCTGG +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMPFSFW*MQTSIW
Trigger: CCAGATACTAGTTTGCATTCACCAGAACGAGAAAGG...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGCATTTCTTGGTGTTTTaGAGGCAGCAGGCTTCGCCA +
Preference number: 4 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVHFLVF*RQQASP
Trigger: TGGCGAAGCCTGCTGCCTGCAAAACACCAAGAAATG...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATAAGTCGTTCCGCAGCATaGTTTCCGCTTTCTCGCGCT +
Preference number: 4 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKISRSAA*FPLSRA
Trigger: AGCGCGAGAAAGCGGAAAGCATGCTGCGGAACGACT...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AAGTGTCTTAGGCTCAAATCCATTCTTAGTCACCATTTTGGGGAGTTGAGAGCAAGCTTCACTGAGAGTTaGCCTGGTAAGACTTGTGGG +
Preference number: 4 (lower is better)
Translates to: KCLRLKSILSHHFGELRASFTES*PGKTCG
Trigger: CCCACAAGTCTTACCAGGGCAACTCTCAGTGAAGCT...TGCTCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCAGCTTCACTGAGAGTTaGCCTGGTAAGACTTGTGGG +
Preference number: 4 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVSFTES*PGKTCG
Trigger: CCCACAAGTCTTACCAGGGCAACTCTCAGTGAAGCT...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp ACTACTACAGGCAAAACACAAGTTGATTGTCTGTCTCCAACAATGCTCTTGATCCTGGGGCGCTCAGACTaGTCTGACATAAAGCTTGTG +
Preference number: 4 (lower is better)
Translates to: TTTGKTQVDCLSPTMLLILGRSD*SDIKLV
Trigger: CACAAGCTTTATGTCAGAGCAGTCTGAGCGCCCCAG...GATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGGGGCGCTCAGACTaGTCTGACATAAAGCTTGTG +
Preference number: 4 (lower is better)
Translates to: SAILNSSYYALSRADKSTLGRSD*SDIKLV
Trigger: CACAAGCTTTATGTCAGAGCAGTCTGAGCGCCCCAG...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCCCCATCCGTCTGCCTTaGATTTTGGGGGTAAATGAA +
Preference number: 4 (lower is better)
Translates to: KMHAALNSSRSCCSNCEIPIRLP*ILGVNE
Trigger: TTCATTTACCCCCAAAATGCAAGGCAGACGGATGGG...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGTGGCTGCCGTCATTGTaGTCCAGTGTATATATCTCT +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMWLPSL*SSVYIS
Trigger: AGAGATATATACACTGGAGCACAATGACGGCAGCCA...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGACTTCGTCCTCGTTTTaGTCTGGGCAGCATGAGAAG +
Preference number: 4 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVTSSSF*SGQHEK
Trigger: CTTCTCATGCTGCCCAGAGCAAAACGAGGACGAAGT...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATTCCTCCTCGGTCAGGTaGCTCAGGTCGGGCAGTTCT +
Preference number: 4 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYSSSVR*LRSGSS
Trigger: AGAACTGCCCGACCTGAGCCACCTGACCGAGGAGGA...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGTTTGTTCCTGTCCAGTaGTGCACCATGGGAAGCAGT +
Preference number: 4 (lower is better)
Translates to: AILNSSYYALSRADKSTLFVPVQ*CTMGSS
Trigger: ACTGCTTCCCATGGTGCACCACTGGACAGGAACAAA...CAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCAATGCACCTGATTCTTTaGGCATGGTTGTTCTTTTGT +
Preference number: 4 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPMHLIL*AWLFFC
Trigger: ACAAAAGAACAACCATGCCCAAAGAATCAGGTGCAT...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGTCCTGTACTCTTGGCTaGTCCCACACAGTAATTTCT +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMSCTLG*SHTVIS
Trigger: AGAAATTACTGTGTGGGACCAGCCAAGAGTACAGGA...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGGACCTTCGTGTTGGATaGATTTCATCTAAGCTCCTC +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMDLRVG*ISSKLL
Trigger: GAGGAGCTTAGATGAAATCCATCCAACACGAAGGTC...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AAGTGTCTTAGGCTCAAATCCATTCTTAGTCACCATTTTGGGGAGTTGAGAGCATCTAGAAAGGCATGGTaGGAGAACCCTGTCTGCATC +
Preference number: 4 (lower is better)
Translates to: KCLRLKSILSHHFGELRASRKAW*ENPVCI
Trigger: GATGCAGACAGGGTTCTCCCACCATGCCTTTCTAGA...TGCTCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTCTAGAAAGGCATGGTaGGAGAACCCTGTCTGCATC +
Preference number: 4 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVSRKAW*ENPVCI
Trigger: GATGCAGACAGGGTTCTCCCACCATGCCTTTCTAGA...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGGGCCTTTCCATCTTCTaGGATTCAAAGGAACTTGAA +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMGLSIF*DSKELE
Trigger: TTCAAGTTCCTTTGAATCTCAGAAGATGGAAAGGCC...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTGGCTCTGATGAATACTaGCTTTCCGCATGTCGTGAT +
Preference number: 4 (lower is better)
Translates to: SSAILNSSYYALSRADKSGSDEY*LSACRD
Trigger: ATCACGACATGCGGAAAGTCAGTATTCATCAGAGCC...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CAGATACGCTCTTCACTGAGAAGTGATTCTGCAACTACTAGTTTGGGTGATGATGGCTCTGATGAATACTaGCTTTCCGCATGTCGTGAT +
Preference number: 4 (lower is better)
Translates to: QIRSSLRSDSATTSLGDDGSDEY*LSACRD
Trigger: ATCACGACATGCGGAAAGTCAGTATTCATCAGAGCC...ATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGGTTTCCGTACTCCTCTaGATGGTGCTTTTTAACTTC +
Preference number: 4 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMVSVLL*MVLFNF
Trigger: GAAGTTAAAAAGCACCATTCAGAGGAGTACGGAAAC...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCCATCAAGGAAATCACTaGACTGACTGTCAGGTCCCA +
Preference number: 4 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVHQGNH*TDCQVP
Trigger: TGGGACCTGACAGTCAGTTCAGTGATTTCCTTGATG...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR TCA 90 bp CAGATACGCTCTTCACTGAGAAGTGATTCTGCAACTACTAGTTTGGGTGATGATCATCAAGGAAATCACTaGACTGACTGTCAGGTCCCA +
Preference number: 4 (lower is better)
Translates to: QIRSSLRSDSATTSLGDDHQGNH*TDCQVP
Trigger: TGGGACCTGACAGTCAGTTCAGTGATTTCCTTGATG...ATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR TCA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTACCCCAGACAATCACCTaGAGAACTTTACCCTGTGGA +
Preference number: 4 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVPQTIT*RTLPCG
Trigger: TCCACAGGGTAAAGTTCTTCAGGTGATTGTCTGGGG...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR GCA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGTCCTCCTCTTCCTTCTaGCGGTCCATCACTGCCATG +
Preference number: 4 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILSSSSF*RSITAM
Trigger: CATGGCAGTGATGGACCGGCAGAAGGAAGAGGAGGA...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AAGTGTCTTAGGCTCAAATCCATTCTTAGTCACCATTTTGGGGAGTTGAGAGCAGTGCACAGAACTTGGTaGGACAATAGGAGCAGAGAT +
Preference number: 4 (lower is better)
Translates to: KCLRLKSILSHHFGELRAVHRTW*DNRSRD
Trigger: ATCTCTGCTCCTATTGTCGCACCAAGTTCTGTGCAC...TGCTCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCGTGCACAGAACTTGGTaGGACAATAGGAGCAGAGAT +
Preference number: 4 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVVHRTW*DNRSRD
Trigger: ATCTCTGCTCCTATTGTCGCACCAAGTTCTGTGCAC...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTTGCCACGTTACAGGATaGGAACTAATAGGCGACGTT +
Preference number: 4 (lower is better)
Translates to: SSAILNSSYYALSRADKSCHVTG*ELIGDV
Trigger: AACGTCGCCTATTAGTTCGCATCCTGTAACGTGGCA...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTGTGTCCGACAACATCTaGCAGGCTACCCTTCTTTAC +
Preference number: 4 (lower is better)
Translates to: SAILNSSYYALSRADKSTVSDNI*QATLLY
Trigger: GTAAAGAAGGGTAGCCTGGCAGATGTTGTCGGACAC...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp ACTACTACAGGCAAAACACAAGTTGATTGTCTGTCTCCAACAATGCTCTTGATCGTGTCCGACAACATCTaGCAGGCTACCCTTCTTTAC +
Preference number: 4 (lower is better)
Translates to: TTTGKTQVDCLSPTMLLIVSDNI*QATLLY
Trigger: GTAAAGAAGGGTAGCCTGGCAGATGTTGTCGGACAC...GATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCTTTACAATCAGCTGGTaGCCCACCTTATCATACCAC +
Preference number: 4 (lower is better)
Translates to: KMHAALNSSRSCCSNCEIFTISW*PTLSYH
Trigger: GTGGTATGATAAGGTGGGGCACCAGCTGATTGTAAA...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGGATTCATCATGTGTCTaGAGTTTATACCAATGGGGC +
Preference number: 4 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMDSSCV*SLYQWG
Trigger: GCCCCATTGGTATAAACTGCAGACACATGATGAATC...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CAGATACGCTCTTCACTGAGAAGTGATTCTGCAACTACTAGTTTGGGTGATGATTGTGTGGTTCTTTGCTaGTCTGGCACTGTTAACGTG +
Preference number: 4 (lower is better)
Translates to: QIRSSLRSDSATTSLGDDCVVLC*SGTVNV
Trigger: CACGTTAACAGTGCCAGAGCAGCAAAGAACCACACA...ATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AAGTGTCTTAGGCTCAAATCCATTCTTAGTCACCATTTTGGGGAGTTGAGAGCACCAGACCCTGTTGTCTaGTTAAATCGGTGTACCTTC +
Preference number: 4 (lower is better)
Translates to: KCLRLKSILSHHFGELRAPDPVV*LNRCTF
Trigger: GAAGGTACACCGATTTAAGCAGACAACAGGGTCTGG...TGCTCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGCCCATCCGTCTGCCTTaGATTTTGGGGGTAAATGAA +
Preference number: 4 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVPIRLP*ILGVNE
Trigger: TTCATTTACCCCCAAAATGCAAGGCAGACGGATGGG...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTGCTGTGATGTGCTTCTaGTTCTTCGAGACACAATGG +
Preference number: 4 (lower is better)
Translates to: SSAILNSSYYALSRADKSAVMCF*FFETQW
Trigger: CCATTGTGTCTCGAAGAAGCAGAAGCACATCACAGC...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TTGTTCTGTCATACGAAGCCATGTTTTAAACAACAATTGGGACACAATTATCGACCGGGGGCAAGGTGGTaGATAGAACACAGGGTTCTG +
Preference number: 4 (lower is better)
Translates to: LFCHTKPCFKQQLGHNYRPGARW*IEHRVL
Trigger: CAGAACCCTGTGTTCTATGCACCACCTTGCCCCCGG...TCGATAATTGTGTCCCAATTGTTGTTTAAAACATGGCTTCGTATGACAGAACAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGGACCTTGATCGCTCTTaGAGCCGAGCTTTCTTTTCT +
Preference number: 4 (lower is better)
Translates to: AILNSSYYALSRADKSTLDLDRS*SRAFFS
Trigger: AGAAAAGAAAGCTCGGCTCCAAGAGCGATCAAGGTC...CAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTCGTCCTGTACTCTTaGCTGGTCCCACACAGTAAT +
Preference number: 4 (lower is better)
Translates to: SAILNSSYYALSRADKSTLVLYS*LVPHSN
Trigger: ATTACTGTGTGGGACCAGCCAAGAGTACAGGACGAG...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGCTTCGGGAGGCATCATaGTGTCGGGTTGGAGAACGT +
Preference number: 4 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILLREAS*CRVGER
Trigger: ACGTTCTCCAACCCGACACCATGATGCCTCCCGAAG...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCACTATCTGATGACTTaGCGGACGCGTTATCACAGC +
Preference number: 4 (lower is better)
Translates to: SAILNSSYYALSRADKSTHYLMT*RTRYHS
Trigger: GCTGTGATAACGCGTCCGCCAAGTCATCAGATAGTG...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATTTCTTCGAGACACAATaGCTACCACTTTGGCACTCA +
Preference number: 4 (lower is better)
Translates to: GACSTYTGHKGNYEEYANFFETQ*LPLWHS
Trigger: TGAGTGCCAAAGTGGTAGCCATTGTGTCTCGAAGAA...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CAGATACGCTCTTCACTGAGAAGTGATTCTGCAACTACTAGTTTGGGTGATGATCTTTTTAACTTCTTGTaGCCGGACTCTGTCTGGCTG +
Preference number: 4 (lower is better)
Translates to: QIRSSLRSDSATTSLGDDLFNFL*PDSVWL
Trigger: CAGCCAGACAGAGTCCGGCCACAAGAAGTTAAAAAG...ATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATGCCGACAAGCTGGGCTaGCCCCAATCCATCAAGGAA +
Preference number: 4 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYADKLG*PQSIKE
Trigger: TTCCTTGATGGATTGGGGCCAGCCCAGCTTGTCGGC...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTCTTGTCTTCTTTTTaGCAATACAGGCTCCATTTT +
Preference number: 4 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTFLSSF*QYRLHF
Trigger: AAAATGGAGCCTGTATTGCCAAAAAGAAGACAAGAA...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR TCA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATACCCCAGACAATCACCTaGAGAACTTTACCCTGTGGA +
Preference number: 4 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKIPQTIT*RTLPCG
Trigger: TCCACAGGGTAAAGTTCTTCAGGTGATTGTCTGGGG...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGCCCCTAATGACCGGTTaGTCGGTTGCTCTTGGGATT +
Preference number: 4 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILPLMTG*SVALGI
Trigger: AATCCCAAGAGCAACCGATCAACCGGTCATTAGGGG...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATACCCTCTTTAGATGGCTaGCACGTTACAGGATGCGAA +
Preference number: 4 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKIPSLDG*HVTGCE
Trigger: TTCGCATCCTGTAACGTGGCAGCCATCTAAAGAGGG...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATAGTGTCCGACAACATCTaGCAGGCTACCCTTCTTTAC +
Preference number: 4 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKIVSDNI*QATLLY
Trigger: GTAAAGAAGGGTAGCCTGGCAGATGTTGTCGGACAC...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGGCTGCCGTCATTGTaGTCCAGTGTATATATCTCT +
Preference number: 4 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVWLPSL*SSVYIS
Trigger: AGAGATATATACACTGGAGCACAATGACGGCAGCCA...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TTGTTCTGTCATACGAAGCCATGTTTTAAACAACAATTGGGACACAATTATCGACGCCCTGGTAACGCCTaGCTTCCTCTCCGATTTTTC +
Preference number: 4 (lower is better)
Translates to: LFCHTKPCFKQQLGHNYRRPGNA*LPLRFF
Trigger: GAAAAATCGGAGAGGAAGCCAGGCGTTACCAGGGCG...TCGATAATTGTGTCCCAATTGTTGTTTAAAACATGGCTTCGTATGACAGAACAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATCGCCCTGGTAACGCCTaGCTTCCTCTCCGATTTTTC +
Preference number: 4 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYRPGNA*LPLRFF
Trigger: GAAAAATCGGAGAGGAAGCCAGGCGTTACCAGGGCG...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGGTCCCCCTCTTTAGATaGCTGCCACGTTACAGGATG +
Preference number: 4 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILVPLFR*LPRYRM
Trigger: CATCCTGTAACGTGGCAGCCATCTAAAGAGGGGGAC...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TTGTTCTGTCATACGAAGCCATGTTTTAAACAACAATTGGGACACAATTATCGACAAAGGAACTTGAACTaGACTCCAGGGGAGGGTGGG +
Preference number: 4 (lower is better)
Translates to: LFCHTKPCFKQQLGHNYRQRNLN*TPGEGG
Trigger: CCCACCCTCCCCTGGAGTCCAGTTCAAGTTCCTTTG...TCGATAATTGTGTCCCAATTGTTGTTTAAAACATGGCTTCGTATGACAGAACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATACATTTACAATCAGCTaGTGCCCCACCTTATCATAC +
Preference number: 4 (lower is better)
Translates to: GACSTYTGHKGNYEEYANTFTIS*CPTLSY
Trigger: GTATGATAAGGTGGGGCACCAGCTGATTGTAAATGT...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTTCTTCGAGACACAATaGCTACCACTTTGGCACTCA +
Preference number: 4 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVFFETQ*LPLWHS
Trigger: TGAGTGCCAAAGTGGTAGCCATTGTGTCTCGAAGAA...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATTGGCCGGACTCTGTCTaGCTGAGCTGTGATGTGCTT +
Preference number: 4 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYWPDSV*LSCDVL
Trigger: AAGCACATCACAGCTCAGCCAGACAGAGTCCGGCCA...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTACTTTTTAACTTCTTGTaGCCGGACTCTGTCTGGCTG +
Preference number: 4 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVLFNFL*PDSVWL
Trigger: CAGCCAGACAGAGTCCGGCCACAAGAAGTTAAAAAG...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GTTTGGTGTGTGTGTGAACTTGAGGTTTCCTTCCCCTCTCTCTCTCTCTCTCTCTTCTTGTCTTCTTTTTaGCAATACAGGCTCCATTTT +
Preference number: 4 (lower is better)
Translates to: VWCVCELEVSFPSLSLSLFLSSF*QYRLHF
Trigger: AAAATGGAGCCTGTATTGCCAAAAAGAAGACAAGAA...GAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACACACACCAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGATGCAAACTAGTATCTaGTCTCAAGCAGTTGGTACT +
Preference number: 4 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMMQTSI*SQAVGT
Trigger: AGTACCAACTGCTTGAGACCAGATACTAGTTTGCAT...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
3UTR CAA 72 bp CGCTCTTCACTGAGAAGTGATTCTGCAACTACTAGTTaGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTG +
Preference number: 4 (lower is better)
Translates to: RSSLRSDSATTS*GDDFYCLCVCV
Trigger: CACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR TCA 90 bp AAGTGTCTTAGGCTCAAATCCATTCTTAGTCACCATTTTGGGGAGTTGAGAGCAGAACACAGACACATCTaGAAATGTTCAGTGGTGGTT +
Preference number: 4 (lower is better)
Translates to: KCLRLKSILSHHFGELRAEHRHI*KCSVVV
Trigger: AACCACCACTGAACATTTTCAGATGTGTCTGTGTTC...TGCTCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATAGGCTCTGATGAATACTaGCTTTCCGCATGTCGTGAT +
Preference number: 4 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKIGSDEY*LSACRD
Trigger: ATCACGACATGCGGAAAGTCAGTATTCATCAGAGCC...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CAGATACGCTCTTCACTGAGAAGTGATTCTGCAACTACTAGTTTGGGTGATGATTCTTCCAACAAGATTTaGGCCACACCCATAAAGCAT +
Preference number: 4 (lower is better)
Translates to: QIRSSLRSDSATTSLGDDSSNKI*ATPIKH
Trigger: ATGCTTTATGGGTGTGGCTCAAATCTTGTTGGAAGA...ATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR GCA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGCCCTCTTTAGATGGCTaGCACGTTACAGGATGCGAA +
Preference number: 4 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILPSLDG*HVTGCE
Trigger: TTCGCATCCTGTAACGTGGCAGCCATCTAAAGAGGG...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCTACTCCTCTGAATGGTaGTTTTTAACTTCTTGTGGC +
Preference number: 4 (lower is better)
Translates to: KMHAALNSSRSCCSNCEIYSSEW*FLTSCG
Trigger: GCCACAAGAAGTTAAAAAGCACCATTCAGAGGAGTA...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGCTGTCAAGAGAGGGCTaGAGTTCACTGGTCATGTGT +
Preference number: 4 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILLSREG*SSLVMC
Trigger: ACACATGACCAGTGAACTGCAGCCCTCTCTTGACAG...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTCTCGTTCTGGTGAATaGAAACTAGTATCTGGTCTC +
Preference number: 4 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVSRSGE*KLVSGL
Trigger: GAGACCAGATACTAGTTTGCATTCACCAGAACGAGA...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTGACCTTCGTGTTGGATaGATTTCATCTAAGCTCCTC +
Preference number: 4 (lower is better)
Translates to: SAILNSSYYALSRADKSTDLRVG*ISSKLL
Trigger: GAGGAGCTTAGATGAAATCCATCCAACACGAAGGTC...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTAATCCACCAGGGAGGATaGAGGGAACAATTTATACCA +
Preference number: 4 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVIHQGG*REQFIP
Trigger: TGGTATAAATTGTTCCCTCCATCCTCCCTGGTGGAT...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp ACTACTACAGGCAAAACACAAGTTGATTGTCTGTCTCCAACAATGCTCTTGATCATCCACCAGGGAGGATaGAGGGAACAATTTATACCA +
Preference number: 4 (lower is better)
Translates to: TTTGKTQVDCLSPTMLLIIHQGG*REQFIP
Trigger: TGGTATAAATTGTTCCCTCCATCCTCCCTGGTGGAT...GATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGTTCCTAGACTGTTTTTaGATGCTAGATCTTTCAGAC +
Preference number: 4 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMFLDCF*MLDLSD
Trigger: GTCTGAAAGATCTAGCATCCAAAAACAGTCTAGGAA...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGATCTTTCAGACTTTCTaGAGTGCCTTTCTCGTTCTG +
Preference number: 4 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVIFQTF*SAFLVL
Trigger: CAGAACGAGAAAGGCACTCCAGAAAGTCTGAAAGAT...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTAGGCCTTTCCATCTTCTaGGATTCAAAGGAACTTGAA +
Preference number: 4 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVGLSIF*DSKELE
Trigger: TTCAAGTTCCTTTGAATCTCAGAAGATGGAAAGGCC...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGAGATGTCACTATCACTaGTTCGCTGAGATCTTTGTA +
Preference number: 4 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVRCHYH*FAEIFV
Trigger: TACAAAGATCTCAGCGAATCAGTGATAGTGACATCT...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TTGTTCTGTCATACGAAGCCATGTTTTAAACAACAATTGGGACACAATTATCGACATTTCTTGGTGTTTTaGAGGCAGCAGGCTTCGCCA +
Preference number: 4 (lower is better)
Translates to: LFCHTKPCFKQQLGHNYRHFLVF*RQQASP
Trigger: TGGCGAAGCCTGCTGCCTGCAAAACACCAAGAAATG...TCGATAATTGTGTCCCAATTGTTGTTTAAAACATGGCTTCGTATGACAGAACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGTGCCACGTTACAGGATaGGAACTAATAGGCGACGTT +
Preference number: 4 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILCHVTG*ELIGDV
Trigger: AACGTCGCCTATTAGTTCGCATCCTGTAACGTGGCA...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TTGTTCTGTCATACGAAGCCATGTTTTAAACAACAATTGGGACACAATTATCGACCCTCTTTAGATGGCTaGCACGTTACAGGATGCGAA +
Preference number: 4 (lower is better)
Translates to: LFCHTKPCFKQQLGHNYRPSLDG*HVTGCE
Trigger: TTCGCATCCTGTAACGTGGCAGCCATCTAAAGAGGG...TCGATAATTGTGTCCCAATTGTTGTTTAAAACATGGCTTCGTATGACAGAACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TTGTTCTGTCATACGAAGCCATGTTTTAAACAACAATTGGGACACAATTATCGAAGCTTCACTGAGAGTTaGCCTGGTAAGACTTGTGGG +
Preference number: 4 (lower is better)
Translates to: LFCHTKPCFKQQLGHNYRSFTES*PGKTCG
Trigger: CCCACAAGTCTTACCAGGGCAACTCTCAGTGAAGCT...TCGATAATTGTGTCCCAATTGTTGTTTAAAACATGGCTTCGTATGACAGAACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTATCTTTGTAGCTTTTTaGTGGAGCTTTCTCCGTGGA +
Preference number: 4 (lower is better)
Translates to: SAILNSSYYALSRADKSTIFVAF*WSFLRG
Trigger: TCCACGGAGAAAGCTCCAGCAAAAAGCTACAAAGAT...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGTGTGTGGTTCTTTGCTaGTCTGGCACTGTTAACGTG +
Preference number: 4 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILCVVLC*SGTVNV
Trigger: CACGTTAACAGTGCCAGAGCAGCAAAGAACCACACA...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGCCAGACCCTGTTGTCTaGTTAAATCGGTGTACCTTC +
Preference number: 4 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILPDPVV*LNRCTF
Trigger: GAAGGTACACCGATTTAAGCAGACAACAGGGTCTGG...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp ACTACTACAGGCAAAACACAAGTTGATTGTCTGTCTCCAACAATGCTCTTGATCTCTCGTTCTGGTGAATaGAAACTAGTATCTGGTCTC +
Preference number: 4 (lower is better)
Translates to: TTTGKTQVDCLSPTMLLISRSGE*KLVSGL
Trigger: GAGACCAGATACTAGTTTGCATTCACCAGAACGAGA...GATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGTCTGAAAATGTTCAGTaGTGGTTGATGGGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILSENVQ*WLMGLA
Trigger: AGCCAGCCCCATCAACCACCACTGAACATTTTCAGA...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATATCCTGTACTCTTGGCTaGTCCCACACAGTAATTTCT +
Preference number: 4 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKISCTLG*SHTVIS
Trigger: AGAAATTACTGTGTGGGACCAGCCAAGAGTACAGGA...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGCTTTTTAACTTCTTGTaGCCGGACTCTGTCTGGCTG +
Preference number: 4 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILLFNFL*PDSVWL
Trigger: CAGCCAGACAGAGTCCGGCCACAAGAAGTTAAAAAG...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTCCGTACTCCTCTGAATaGTGCTTTTTAACTTCTTGT +
Preference number: 4 (lower is better)
Translates to: SSAILNSSYYALSRADKSPYSSE*CFLTSC
Trigger: ACAAGAAGTTAAAAAGCACCATTCAGAGGAGTACGG...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGATGCAAACTAGTATCTaGTCTCAAGCAGTTGGTACT +
Preference number: 4 (lower is better)
Translates to: AILNSSYYALSRADKSTLMQTSI*SQAVGT
Trigger: AGTACCAACTGCTTGAGACCAGATACTAGTTTGCAT...CAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp CAGATACGCTCTTCACTGAGAAGTGATTCTGCAACTACTAGTTTGGGTGATGATATCAACCTCATAATCTaGGATGTCACTATCACTGAT +
Preference number: 4 (lower is better)
Translates to: QIRSSLRSDSATTSLGDDINLII*DVTITD
Trigger: ATCAGTGATAGTGACATCTCAGATTATGAGGTTGAT...ATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp TTGTTCTGTCATACGAAGCCATGTTTTAAACAACAATTGGGACACAATTATCGACATCAAGGAAATCACTaGACTGACTGTCAGGTCCCA +
Preference number: 4 (lower is better)
Translates to: LFCHTKPCFKQQLGHNYRHQGNH*TDCQVP
Trigger: TGGGACCTGACAGTCAGTTCAGTGATTTCCTTGATG...TCGATAATTGTGTCCCAATTGTTGTTTAAAACATGGCTTCGTATGACAGAACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR TCA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATATCTTCCAACAAGATTTaGGCCACACCCATAAAGCAT +
Preference number: 4 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKISSNKI*ATPIKH
Trigger: ATGCTTTATGGGTGTGGCTCAAATCTTGTTGGAAGA...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATAGATTCATCATGTGTCTaGAGTTTATACCAATGGGGC +
Preference number: 4 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKIDSSCV*SLYQWG
Trigger: GCCCCATTGGTATAAACTGCAGACACATGATGAATC...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTATACTCCTCTGAATGGTaGTTTTTAACTTCTTGTGGC +
Preference number: 4 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVYSSEW*FLTSCG
Trigger: GCCACAAGAAGTTAAAAAGCACCATTCAGAGGAGTA...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp ACTACTACAGGCAAAACACAAGTTGATTGTCTGTCTCCAACAATGCTCTTGATCATGCACCTGATTCTTTaGGCATGGTTGTTCTTTTGT +
Preference number: 4 (lower is better)
Translates to: TTTGKTQVDCLSPTMLLIMHLIL*AWLFFC
Trigger: ACAAAAGAACAACCATGCCCAAAGAATCAGGTGCAT...GATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATAACATTTACAATCAGCTaGTGCCCCACCTTATCATAC +
Preference number: 4 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKITFTIS*CPTLSY
Trigger: GTATGATAAGGTGGGGCACCAGCTGATTGTAAATGT...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp ACTACTACAGGCAAAACACAAGTTGATTGTCTGTCTCCAACAATGCTCTTGATCTTTGTAGCTTTTTGCTaGAGCTTTCTCCGTGGATAT +
Preference number: 4 (lower is better)
Translates to: TTTGKTQVDCLSPTMLLIFVAFC*SFLRGY
Trigger: ATATCCACGGAGAAAGCTCCAGCAAAAAGCTACAAA...GATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCCGTACTCCTCTGAATaGTGCTTTTTAACTTCTTGT +
Preference number: 4 (lower is better)
Translates to: SAILNSSYYALSRADKSTPYSSE*CFLTSC
Trigger: ACAAGAAGTTAAAAAGCACCATTCAGAGGAGTACGG...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTAAGAACTTTACCCTGTaGACTTTCATCAAAAACCAG +
Preference number: 4 (lower is better)
Translates to: SSAILNSSYYALSRADKSKNFTL*TFIKNQ
Trigger: CTGGTTTTTGATGAAAGTCCACAGGGTAAAGTTCTT...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp GCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGAAGAACTTTACCCTGTaGACTTTCATCAAAAACCAG +
Preference number: 4 (lower is better)
Translates to: AILNSSYYALSRADKSTLKNFTL*TFIKNQ
Trigger: CTGGTTTTTGATGAAAGTCCACAGGGTAAAGTTCTT...CAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR TCA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGGAACACAGACACATCTaGAAATGTTCAGTGGTGGTT +
Preference number: 4 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILEHRHI*KCSVVV
Trigger: AACCACCACTGAACATTTTCAGATGTGTCTGTGTTC...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATTTTACAATCAGCTGGTaGCCCACCTTATCATACCAC +
Preference number: 4 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYFTISW*PTLSYH
Trigger: GTGGTATGATAAGGTGGGGCACCAGCTGATTGTAAA...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TTGTTCTGTCATACGAAGCCATGTTTTAAACAACAATTGGGACACAATTATCGATCAGACTTTCTGGAGTaGCTTTCTCGTTCTGGTGAA +
Preference number: 4 (lower is better)
Translates to: LFCHTKPCFKQQLGHNYRSDFLE*LSRSGE
Trigger: TTCACCAGAACGAGAAAGGCACTCCAGAAAGTCTGA...TCGATAATTGTGTCCCAATTGTTGTTTAAAACATGGCTTCGTATGACAGAACAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTTATGTATGTTGTACTTaGAGTATTGCTCGTGGTCAA +
Preference number: 4 (lower is better)
Translates to: SAILNSSYYALSRADKSTYVCCT*SIARGQ
Trigger: TTGACCACGAGCAATACTCCAAGTACAACATACATA...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp AAGTGTCTTAGGCTCAAATCCATTCTTAGTCACCATTTTGGGGAGTTGAGAGCATTCTTGTCTTCTTTTTaGCAATACAGGCTCCATTTT +
Preference number: 4 (lower is better)
Translates to: KCLRLKSILSHHFGELRAFLSSF*QYRLHF
Trigger: AAAATGGAGCCTGTATTGCCAAAAAGAAGACAAGAA...TGCTCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CCA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATATCTTTCAGACTTTCTaGAGTGCCTGTCATTCTCCG +
Preference number: 4 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYIFQTF*SACHSP
Trigger: CGGAGAATGACAGGCACTCCAGAAAGTCTGAAAGAT...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097809.11
CDS-3UTR GCA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATGATTCATCATGTGTCTaGAGTTTATACCAATGGGGC +
Preference number: 4 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYDSSCV*SLYQWG
Trigger: GCCCCATTGGTATAAACTGCAGACACATGATGAATC...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATACATTTACAATCAGCTaGTGCCCCACCTTATCATAC +
Preference number: 4 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYTFTIS*CPTLSY
Trigger: GTATGATAAGGTGGGGCACCAGCTGATTGTAAATGT...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATAAAGAACTTTACCCTGTaGACTTTCATCAAAAACCAG +
Preference number: 4 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKIKNFTL*TFIKNQ
Trigger: CTGGTTTTTGATGAAAGTCCACAGGGTAAAGTTCTT...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATATTCCTAGACTGTTTTTaGATGCTAGATCTTTCAGAC +
Preference number: 4 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKIFLDCF*MLDLSD
Trigger: GTCTGAAAGATCTAGCATCCAAAAACAGTCTAGGAA...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR TCA 90 bp TTGTTCTGTCATACGAAGCCATGTTTTAAACAACAATTGGGACACAATTATCGAAGATGTCACTATCACTaGTTCGCTGAGATCTTTGTA +
Preference number: 4 (lower is better)
Translates to: LFCHTKPCFKQQLGHNYRRCHYH*FAEIFV
Trigger: TACAAAGATCTCAGCGAATCAGTGATAGTGACATCT...TCGATAATTGTGTCCCAATTGTTGTTTAAAACATGGCTTCGTATGACAGAACAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR GCA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATTACTCCTCTGAATGGTaGTTTTTAACTTCTTGTGGC +
Preference number: 4 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYYSSEW*FLTSCG
Trigger: GCCACAAGAAGTTAAAAAGCACCATTCAGAGGAGTA...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TTGTTCTGTCATACGAAGCCATGTTTTAAACAACAATTGGGACACAATTATCGAATGCACCTGATTCTTTaGGCATGGTTGTTCTTTTGT +
Preference number: 4 (lower is better)
Translates to: LFCHTKPCFKQQLGHNYRMHLIL*AWLFFC
Trigger: ACAAAAGAACAACCATGCCCAAAGAATCAGGTGCAT...TCGATAATTGTGTCCCAATTGTTGTTTAAAACATGGCTTCGTATGACAGAACAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATTTTGTAGCTTTTTGCTaGAGCTTTCTCCGTGGATAT +
Preference number: 4 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYFVAFC*SFLRGY
Trigger: ATATCCACGGAGAAAGCTCCAGCAAAAAGCTACAAA...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp TTGTTCTGTCATACGAAGCCATGTTTTAAACAACAATTGGGACACAATTATCGATATGTATGTTGTACTTaGAGTATTGCTCGTGGTCAA +
Preference number: 4 (lower is better)
Translates to: LFCHTKPCFKQQLGHNYRYVCCT*SIARGQ
Trigger: TTGACCACGAGCAATACTCCAAGTACAACATACATA...TCGATAATTGTGTCCCAATTGTTGTTTAAAACATGGCTTCGTATGACAGAACAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CCA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGTTCTTGTCTTCTTTTTaGCAATACAGGCTCCATTTT +
Preference number: 4 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILFLSSF*QYRLHF
Trigger: AAAATGGAGCCTGTATTGCCAAAAAGAAGACAAGAA...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS CCA 90 bp GACACAGCGGCGGCAGCCTCGGTGTGCGGGAGCGCCACGTCGCTGTaGCGCCGCTCGTGCCTCGCTCGGGACACCCGGGCGTGCATGCGC +
Preference number: 5 (lower is better)
Translates to: DTAAAASVCGSATSL*RRSCLARDTRACMR
Trigger: GCGCATGCACGCCCGGGTGTCCCGAGCGAGGCACGAGCGGCGCCACAGCGACGTGGCGCTCCCGCACACCGAGGCTGCCGCCGCTGTGTC
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS TCA 90 bp GACCCTGGCGGTGGTCTGCGCGCGCTTGCCCGCCGTGGTCTCGGCTaGCACAGCGGCGGCAGCCTCGGTGTGCGGGAGCGCCACGTCGCT +
Preference number: 5 (lower is better)
Translates to: DPGGGLRALARRGLG*HSGGSLGVRERHVA
Trigger: AGCGACGTGGCGCTCCCGCACACCGAGGCTGCCGCCGCTGTGTCAGCCGAGACCACGGCGGGCAAGCGCGCGCAGACCACCGCCAGGGTC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 90 bp TTGCCCGCCGTGGTCTCGGCTGACACAGCGGCGGCAGCCTCGGTGTaGGGGAGCGCCACGTCGCTGTGGCGCCGCTCGTGCCTCGCTCGG +
Preference number: 5 (lower is better)
Translates to: LPAVVSADTAAAASV*GSATSLWRRSCLAR
Trigger: CCGAGCGAGGCACGAGCGGCGCCACAGCGACGTGGCGCTCCCGCACACCGAGGCTGCCGCCGCTGTGTCAGCCGAGACCACGGCGGGCAA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 90 bp GCAGCCTCGGTGTGCGGGAGCGCCACGTCGCTGTGGCGCCGCTCGTaGCTCGCTCGGGACACCCGGGCGTGCATGCGCATCTGCTGTTCC +
Preference number: 5 (lower is better)
Translates to: AASVCGSATSLWRRS*LARDTRACMRICCS
Trigger: GGAACAGCAGATGCGCATGCACGCCCGGGTGTCCCGAGCGAGGCACGAGCGGCGCCACAGCGACGTGGCGCTCCCGCACACCGAGGCTGC
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 90 bp CGCTGTGGCGCCGCTCGTGCCTCGCTCGGGACACCCGGGCGTGCATaGGCATCTGCTGTTCCTCCAGCGGCGCCTTCACCGGGTAGCGAG +
Preference number: 5 (lower is better)
Translates to: RCGAARASLGTPGRA*ASAVPPAAPSPGSE
Trigger: CTCGCTACCCGGTGAAGGCGCCGCTGGAGGAACAGCAGATGCGCATGCACGCCCGGGTGTCCCGAGCGAGGCACGAGCGGCGCCACAGCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 90 bp ACACGCCCTCCTCCTCGGAGCTGCTCACCGACATCTGACGCCTCTTaGCTCCCCGCTTGGGCCGGTGTGGCTTGGGCGGGGATGGCCGCA +
Preference number: 5 (lower is better)
Translates to: TRPPPRSCSPTSDAS*LPAWAGVAWAGMAA
Trigger: TGCGGCCATCCCCGCCCAAGCCACACCGGCCCAAGCGGGGAGGCAAGAGGCGTCAGATGTCGGTGAGCAGCTCCGAGGAGGAGGGCGTGT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 90 bp ACGCCTCTTGCCTCCCCGCTTGGGCCGGTGTGGCTTGGGCGGGGATaGCCGCACCGACTCGGACTGATCGGAGCTCAGCGAGTCGTTCCG +
Preference number: 5 (lower is better)
Translates to: TPLASPLGPVWLGRG*PHRLGLIGAQRVVP
Trigger: CGGAACGACTCGCTGAGCTCCGATCAGTCCGAGTCGGTGCGGCCATCCCCGCCCAAGCCACACCGGCCCAAGCGGGGAGGCAAGAGGCGT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 90 bp CCGACATCTGACGCCTCTTGCCTCCCCGCTTGGGCCGGTGTGGCTTaGGCGGGGATGGCCGCACCGACTCGGACTGATCGGAGCTCAGCG +
Preference number: 5 (lower is better)
Translates to: PTSDASCLPAWAGVA*AGMAAPTRTDRSSA
Trigger: CGCTGAGCTCCGATCAGTCCGAGTCGGTGCGGCCATCCCCGCCCAAGCCACACCGGCCCAAGCGGGGAGGCAAGAGGCGTCAGATGTCGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 90 bp CCTCGGAGCTGCTCACCGACATCTGACGCCTCTTGCCTCCCCGCTTaGGCCGGTGTGGCTTGGGCGGGGATGGCCGCACCGACTCGGACT +
Preference number: 5 (lower is better)
Translates to: PRSCSPTSDASCLPA*AGVAWAGMAAPTRT
Trigger: AGTCCGAGTCGGTGCGGCCATCCCCGCCCAAGCCACACCGGCCCAAGCGGGGAGGCAAGAGGCGTCAGATGTCGGTGAGCAGCTCCGAGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 90 bp CGCAGCTCGTGTACTCCGGCGTGGACACGCCCTCCTCCTCGGAGCTaGTCACCGACATCTGACGCCTCTTGCCTCCCCGCTTGGGCCGGT +
Preference number: 5 (lower is better)
Translates to: RSSCTPAWTRPPPRS*SPTSDASCLPAWAG
Trigger: ACCGGCCCAAGCGGGGAGGCAAGAGGCGTCAGATGTCGGTGAGCAGCTCCGAGGAGGAGGGCGTGTCCACGCCGGAGTACACGAGCTGCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 90 bp GCTCACCGACATCTGACGCCTCTTGCCTCCCCGCTTGGGCCGGTGTaGCTTGGGCGGGGATGGCCGCACCGACTCGGACTGATCGGAGCT +
Preference number: 5 (lower is better)
Translates to: AHRHLTPLASPLGPV*LGRGWPHRLGLIGA
Trigger: AGCTCCGATCAGTCCGAGTCGGTGCGGCCATCCCCGCCCAAGCCACACCGGCCCAAGCGGGGAGGCAAGAGGCGTCAGATGTCGGTGAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 90 bp AGCTCAGCGAGTCGTTCCGCAGCATGCTTTCCGCTTTCTCGCGCTTaGCCTTGCGCAGGAGCACAGCCGAGCCGGGGTCCAGGCGGCCCT +
Preference number: 5 (lower is better)
Translates to: SSASRSAACFPLSRA*PCAGAQPSRGPGGP
Trigger: AGGGCCGCCTGGACCCCGGCTCGGCTGTGCTCCTGCGCAAGGCCAAGCGCGAGAAAGCGGAAAGCATGCTGCGGAACGACTCGCTGAGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 90 bp TCTCGAGCCGGTCCGGGTAGTCCTGAGAGCGCCCTTTCTCCAGCCTaGGGGTTTCCCGCCTCTCCTTCCTCTCCCGTTCATCCGCGGTCC +
Preference number: 5 (lower is better)
Translates to: SRAGPGSPESALSPA*GFPASPSSPVHPRS
Trigger: GGACCGCGGATGAACGGGAGAGGAAGGAGAGGCGGGAAACCCGCAGGCTGGAGAAAGGGCGCTCTCAGGACTACCCGGACCGGCTCGAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 90 bp TCTCGCTCTCCAGCTCCACGTCCTCGCAGCTCGTGTACTCCGGCGTaGACACGCCCTCCTCCTCGGAGCTGCTCACCGACATCTGACGCC +
Preference number: 5 (lower is better)
Translates to: SRSPAPRPRSSCTPA*TRPPPRSCSPTSDA
Trigger: GGCGTCAGATGTCGGTGAGCAGCTCCGAGGAGGAGGGCGTGTCCACGCCGGAGTACACGAGCTGCGAGGACGTGGAGCTGGAGAGCGAGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS TCA 90 bp TTGGGCCGGTGTGGCTTGGGCGGGGATGGCCGCACCGACTCGGACTaGTCGGAGCTCAGCGAGTCGTTCCGCAGCATGCTTTCCGCTTTC +
Preference number: 5 (lower is better)
Translates to: LGRCGLGGDGRTDSD*SELSESFRSMLSAF
Trigger: GAAAGCGGAAAGCATGCTGCGGAACGACTCGCTGAGCTCCGATCAGTCCGAGTCGGTGCGGCCATCCCCGCCCAAGCCACACCGGCCCAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 90 bp GCACCGACTCGGACTGATCGGAGCTCAGCGAGTCGTTCCGCAGCATaGTTTCCGCTTTCTCGCGCTTGGCCTTGCGCAGGAGCACAGCCG +
Preference number: 5 (lower is better)
Translates to: APTRTDRSSASRSAA*FPLSRAWPCAGAQP
Trigger: CGGCTGTGCTCCTGCGCAAGGCCAAGCGCGAGAAAGCGGAAAGCATGCTGCGGAACGACTCGCTGAGCTCCGATCAGTCCGAGTCGGTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 90 bp TGCCGCTTCGGACCGGCACCTGTGGGAGCTGTCTTCCGCGGCGACTaGCAAAGGATGTGTCAGCTGGAGGTGACTGGGTGGGGCTTCCTT +
Preference number: 5 (lower is better)
Translates to: CRFGPAPVGAVFRGD*QRMCQLEVTGWGFL
Trigger: AAGGAAGCCCCACCCAGTCACCTCCAGCTGACACATCCTTTGGCAGTCGCCGCGGAAGACAGCTCCCACAGGTGCCGGTCCGAAGCGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 90 bp AAGGATGTGTCAGCTGGAGGTGACTGGGTGGGGCTTCCTTGTCGGTaGGTTCTTGTCAGAAGCGGAGAAGGCGGCGCTGACCCTCCGGGG +
Preference number: 5 (lower is better)
Translates to: KDVSAGGDWVGLPCR*VLVRSGEGGADPPG
Trigger: CCCCGGAGGGTCAGCGCCGCCTTCTCCGCTTCTGACAAGAACGCACCGACAAGGAAGCCCCACCCAGTCACCTCCAGCTGACACATCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 90 bp GTCAGAAGCGGAGAAGGCGGCGCTGACCCTCCGGGGGCAAGGTGGTaGATAGAACACAGGGTTCTGATACTAGAGTGCTCGCTCGACCGG +
Preference number: 5 (lower is better)
Translates to: VRSGEGGADPPGARW*IEHRVLILECSLDR
Trigger: CCGGTCGAGCGAGCACTCTAGTATCAGAACCCTGTGTTCTATGCACCACCTTGCCCCCGGAGGGTCAGCGCCGCCTTCTCCGCTTCTGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 90 bp CTGACCCTTCTTATCCTCCATCCCGATTTGGATATCGCCCATGGCTaGGGTGGCGAGGGTTTGGCGGCCGACAAGCTGGGCTGGCCCCAA +
Preference number: 5 (lower is better)
Translates to: LTLLILHPDLDIAHG*GGEGLAADKLGWPQ
Trigger: TTGGGGCCAGCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCCAGCCATGGGCGATATCCAAATCGGGATGGAGGATAAGAAGGGTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS CCA 90 bp CCAACTGACCCTTCTTATCCTCCATCCCGATTTGGATATCGCCCATaGCTGGGGTGGCGAGGGTTTGGCGGCCGACAAGCTGGGCTGGCC +
Preference number: 5 (lower is better)
Translates to: PTDPSYPPSRFGYRP*LGWRGFGGRQAGLA
Trigger: GGCCAGCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCCAGCCATGGGCGATATCCAAATCGGGATGGAGGATAAGAAGGGTCAGTTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS TCA 90 bp GAGCTGTCTTCCGCGGCGACTGCCAAAGGATGTGTCAGCTGGAGGTaGCTGGGTGGGGCTTCCTTGTCGGTGCGTTCTTGTCAGAAGCGG +
Preference number: 5 (lower is better)
Translates to: ELSSAATAKGCVSWR*LGGASLSVRSCQKR
Trigger: CCGCTTCTGACAAGAACGCACCGACAAGGAAGCCCCACCCAGTCACCTCCAGCTGACACATCCTTTGGCAGTCGCCGCGGAAGACAGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 90 bp CCTTCTTATCCTCCATCCCGATTTGGATATCGCCCATGGCTGGGGTaGCGAGGGTTTGGCGGCCGACAAGCTGGGCTGGCCCCAATCCAT +
Preference number: 5 (lower is better)
Translates to: PSYPPSRFGYRPWLG*RGFGGRQAGLAPIH
Trigger: ATGGATTGGGGCCAGCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCCAGCCATGGGCGATATCCAAATCGGGATGGAGGATAAGAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS CCA 90 bp TTCCGCGGCGACTGCCAAAGGATGTGTCAGCTGGAGGTGACTGGGTaGGGCTTCCTTGTCGGTGCGTTCTTGTCAGAAGCGGAGAAGGCG +
Preference number: 5 (lower is better)
Translates to: FRGDCQRMCQLEVTG*GFLVGAFLSEAEKA
Trigger: CGCCTTCTCCGCTTCTGACAAGAACGCACCGACAAGGAAGCCCCACCCAGTCACCTCCAGCTGACACATCCTTTGGCAGTCGCCGCGGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 90 bp TCCATCCCGATTTGGATATCGCCCATGGCTGGGGTGGCGAGGGTTTaGCGGCCGACAAGCTGGGCTGGCCCCAATCCATCAAGGAAATCA +
Preference number: 5 (lower is better)
Translates to: SIPIWISPMAGVARV*RPTSWAGPNPSRKS
Trigger: TGATTTCCTTGATGGATTGGGGCCAGCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCCAGCCATGGGCGATATCCAAATCGGGATGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS CCA 90 bp CTTGTCAGAAGCGGAGAAGGCGGCGCTGACCCTCCGGGGGCAAGGTaGTGCATAGAACACAGGGTTCTGATACTAGAGTGCTCGCTCGAC +
Preference number: 5 (lower is better)
Translates to: LVRSGEGGADPPGAR*CIEHRVLILECSLD
Trigger: GTCGAGCGAGCACTCTAGTATCAGAACCCTGTGTTCTATGCACCACCTTGCCCCCGGAGGGTCAGCGCCGCCTTCTCCGCTTCTGACAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS TCA 90 bp GACTTTCTGGAGTGCCTGTCATTCTCCGGAGACGCATGCTGGATTTaGATCCTGGGGCTAGCAGGTCGCCTCCTAGCTAGGGAGGGGGAC +
Preference number: 5 (lower is better)
Translates to: DFLECLSFSGDACWI*ILGLAGRLLAREGD
Trigger: GTCCCCCTCCCTAGCTAGGAGGCGACCTGCTAGCCCCAGGATTCAAATCCAGCATGCGTCTCCGGAGAATGACAGGCACTCCAGAAAGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
CDS GCA 90 bp TCTGATACTCCTCCTCCTTCCTCTGCTTTTCGTCTTCAGCCACCCTaGCATCCTCGCGTTTCTCGAGCCGGTCCGGGTAGTCCTGAGAGC +
Preference number: 5 (lower is better)
Translates to: SDTPPPSSAFRLQPP*HPRVSRAGPGSPES
Trigger: GCTCTCAGGACTACCCGGACCGGCTCGAGAAACGCGAGGATGGCAGGGTGGCTGAAGACGAAAAGCAGAGGAAGGAGGAGGAGTATCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 90 bp GCGAGTCTCACATGTTCCCGCCTCAGAATCGACAGACCTCAGCTCTaGCCAGCCTTCTGCGGAGACGGGAAGCCCAGATGTACACATCAC +
Preference number: 5 (lower is better)
Translates to: ASLTCSRLRIDRPQL*PAFCGDGKPRCTHH
Trigger: GTGATGTGTACATCTGGGCTTCCCGTCTCCGCAGAAGGCTGGGCAGAGCTGAGGTCTGTCGATTCTGAGGCGGGAACATGTGAGACTCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239255.2
CDS CCA 90 bp CCGGGTTGCACCACAGACTTGGGGACACGTTTGCGCTCACTCTTCTaGCCTCCCTTGCCATTCTGCTCTGAAAGCCCTGGAGCCTTCTTC +
Preference number: 5 (lower is better)
Translates to: PGCTTDLGTRLRSLF*PPLPFCSESPGAFF
Trigger: GAAGAAGGCTCCAGGGCTTTCAGAGCAGAATGGCAAGGGAGGCCAGAAGAGTGAGCGCAAACGTGTCCCCAAGTCTGTGGTGCAACCCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCATGGGGTGGCGAGGGTTaGGCGGCCGACAAGCTGGGC +
Preference number: 5 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPWGGEG*AADKLG
Trigger: GCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCCA...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS GCA 90 bp GCCTTCTTCCTTTCCCTTGGTGGCTCACTTCTTGACCTTGATGCCTaGTTCTGTTCAGGACCCAAGGCTTGCTGTGAGGGCTCCGCCCCT +
Preference number: 5 (lower is better)
Translates to: AFFLSLGGSLLDLDA*FCSGPKACCEGSAP
Trigger: AGGGGCGGAGCCCTCACAGCAAGCCTTGGGTCCTGAACAGAAGCAGGCATCAAGGTCAAGAAGTGAGCCACCAAGGGAAAGGAAGAAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 90 bp TTCCGCGGCGACTGCCAAAGGATGTGTCAGCTGGAGGTGACTGGGTaGGGCTTCCTTGTCGGTGCGTTCTGTCTGGCTCTGATGAATACT +
Preference number: 5 (lower is better)
Translates to: FRGDCQRMCQLEVTG*GFLVGAFCLALMNT
Trigger: AGTATTCATCAGAGCCAGACAGAACGCACCGACAAGGAAGCCCCACCCAGTCACCTCCAGCTGACACATCCTTTGGCAGTCGCCGCGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081544.14
CDS CCA 90 bp TTCTGCTTCTTCGAGACACAATGGCTACCACTTTGGCACTCAGGCTaGACCTCCGCTTCTTTCCACCAGCTCCAACGGTACCCACGGCCG +
Preference number: 5 (lower is better)
Translates to: FCFFETQWLPLWHSG*TSASFHQLQRYPRP
Trigger: CGGCCGTGGGTACCGTTGGAGCTGGTGGAAAGAAGCGGAGGTCCAGCCTGAGTGCCAAAGTGGTAGCCATTGTGTCTCGAAGAAGCAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGTTCTCGCGCTTGGCCTaGCGCAGGAGCACAGCCGAG +
Preference number: 5 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLFSRLA*RRSTAE
Trigger: CTCGGCTGTGCTCCTGCGCAAGGCCAAGCGCGAGAA...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTCTCGCGCTTGGCCTaGCGCAGGAGCACAGCCGAG +
Preference number: 5 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTFSRLA*RRSTAE
Trigger: CTCGGCTGTGCTCCTGCGCAAGGCCAAGCGCGAGAA...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 90 bp TCACTTCTTGACCTTGATGCCTGCTTCTGTTCAGGACCCAAGGCTTaGTGTGAGGGCTCCGCCCCTTTGTTCCTGTCCAGTGGTGCACCA +
Preference number: 5 (lower is better)
Translates to: SLLDLDACFCSGPKA*CEGSAPLFLSSGAP
Trigger: TGGTGCACCACTGGACAGGAACAAAGGGGCGGAGCCCTCACAGCAAGCCTTGGGTCCTGAACAGAAGCAGGCATCAAGGTCAAGAAGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 90 bp AGCCCGGCGGGTCAGGGGAGTGAGTGTGGGATCCACCAGGGAGGATaGAGGGAACAATTTATACCATCCAATCACCATGCTGGACAGATC +
Preference number: 5 (lower is better)
Translates to: SPAGQGSECGIHQGG*REQFIPSNHHAGQI
Trigger: GATCTGTCCAGCATGGTGATTGGATGGTATAAATTGTTCCCTCCATCCTCCCTGGTGGATCCCACACTCACTCCCCTGACCCGCCGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CAA 90 bp TTTCCAGGGCAGACAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCCTCTTCTGGCCTCCCTaGCCATTCTGCTCTGAAAGC +
Preference number: 5 (lower is better)
Translates to: FPGQTSLLWGMAEKPGHSLFWPP*PFCSES
Trigger: GCTTTCAGAGCAGAATGGCAAGGGAGGCCAGAAGAG...GCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTGCCCTGGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTACTGGGTGGGGCTTCCTaGTCGGTGCGTTCTGTCTGG +
Preference number: 5 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLLGGAS*SVRSVW
Trigger: CCAGACAGAACGCACCGACAAGGAAGCCCCACCCAG...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081544.14
CDS TCA 90 bp GACACGTTTGCGCTCACTCTTCTGGCCTCCCTTGCCATTCTGCTCTaGAAGCCCTGGAGCCTTCTTCCTTTCCCTTGGTGGCTCACTTCT +
Preference number: 5 (lower is better)
Translates to: DTFALTLLASLAILL*KPWSLLPFPWWLTS
Trigger: AGAAGTGAGCCACCAAGGGAAAGGAAGAAGGCTCCAGGGCTTTCAGAGCAGAATGGCAAGGGAGGCCAGAAGAGTGAGCGCAAACGTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 90 bp CCGGGAGCGAGTGGTATGCTTTCCCCTAATGACCGGTTGATCGGTTaGTCTTGGGATTGCGTATCCCCTTCTAGAAAGGCATGGTGGGAG +
Preference number: 5 (lower is better)
Translates to: PGASGMLSPNDRLIG*SWDCVSPSRKAWWE
Trigger: CTCCCACCATGCCTTTCTAGAAGGGGATACGCAATCCCAAGAGCAACCGATCAACCGGTCATTAGGGGAAAGCATACCACTCGCTCCCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 90 bp ATGCCACGTGGCAGGATCCAACCAGTAGTCCAAGTCACCAGCACATaGTTGGCGAGTCTCACATGTTCCCGCCTCAGAATCGACAGACCT +
Preference number: 5 (lower is better)
Translates to: MPRGRIQPVVQVTST*LASLTCSRLRIDRP
Trigger: AGGTCTGTCGATTCTGAGGCGGGAACATGTGAGACTCGCCAAGCATGTGCTGGTGACTTGGACTACTGGTTGGATCCTGCCACGTGGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239255.2
CDS CCA 90 bp GCTGTGATGTGCTTCTGCTTCTTCGAGACACAATGGCTACCACTTTaGCACTCAGGCTGGACCTCCGCTTCTTTCCACCAGCTCCAACGG +
Preference number: 5 (lower is better)
Translates to: AVMCFCFFETQWLPL*HSGWTSASFHQLQR
Trigger: CCGTTGGAGCTGGTGGAAAGAAGCGGAGGTCCAGCCTGAGTGCCAAAGTGGTAGCCATTGTGTCTCGAAGAAGCAGAAGCACATCACAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATTGGGGTGGCGAGGGTTaGGCGGCCGACAAGCTGGGC +
Preference number: 5 (lower is better)
Translates to: GACSTYTGHKGNYEEYANWGGEG*AADKLG
Trigger: GCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCCA...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS TCA 90 bp TCGCTCGACCGGGAGCGAGTGGTATGCTTTCCCCTAATGACCGGTTaGTCGGTTGCTCTTGGGATTGCGTATCCCCTTCTAGAAAGGCAT +
Preference number: 5 (lower is better)
Translates to: SLDRERVVCFPLMTG*SVALGIAYPLLERH
Trigger: ATGCCTTTCTAGAAGGGGATACGCAATCCCAAGAGCAACCGATCAACCGGTCATTAGGGGAAAGCATACCACTCGCTCCCGGTCGAGCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 90 bp GATCATCGCCGCGATGAGGAGACACGGAACGTGAGCGGTGATGTGTaGTTCTTTGCTGCTCTGGCACTGTTAACGTGGTGGCTTTACTCT +
Preference number: 5 (lower is better)
Translates to: DHRRDEETRNVSGDV*FFAALALLTWWLYS
Trigger: AGAGTAAAGCCACCACGTTAACAGTGCCAGAGCAGCAAAGAACCACACATCACCGCTCACGTTCCGTGTCTCCTCATCGCGGCGATGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GTTTGGTGTGTGTGTGAACTTGAGGTTTCCTTCCCCTCTCTCTCTCTCTCTCTCAGGGCGTCTGAGACCTaGATCGCTCTTGGAGCCGAG +
Preference number: 5 (lower is better)
Translates to: VWCVCELEVSFPSLSLSLRASET*IALGAE
Trigger: CTCGGCTCCAAGAGCGATCAAGGTCTCAGACGCCCT...GAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACACACACCAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS TCA 90 bp GTCTTGGGAAGAGACAGCTGCTGTACTCAAGGGCGTCTGAGACCTTaGTCGCTCTTGGAGCCGAGCTTTCTTTTCTCTTGGCACCTCAGA +
Preference number: 5 (lower is better)
Translates to: VLGRDSCCTQGRLRP*SLLEPSFLFSWHLR
Trigger: TCTGAGGTGCCAAGAGAAAAGAAAGCTCGGCTCCAAGAGCGATCAAGGTCTCAGACGCCCTTGAGTACAGCAGCTGTCTCTTCCCAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS TCA 90 bp GAAGCAGTGTCTTGGGAAGAGACAGCTGCTGTACTCAAGGGCGTCTaGGACCTTGATCGCTCTTGGAGCCGAGCTTTCTTTTCTCTTGGC +
Preference number: 5 (lower is better)
Translates to: EAVSWEETAAVLKGV*DLDRSWSRAFFSLG
Trigger: GCCAAGAGAAAAGAAAGCTCGGCTCCAAGAGCGATCAAGGTCTCAGACGCCCTTGAGTACAGCAGCTGTCTCTTCCCAAGACACTGCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 90 bp GGTATGCTTTCCCCTAATGACCGGTTGATCGGTTGCTCTTGGGATTaGGTATCCCCTTCTAGAAAGGCATGGTGGGAGAACCCTGTCTGC +
Preference number: 5 (lower is better)
Translates to: GMLSPNDRLIGCSWD*VSPSRKAWWENPVC
Trigger: GCAGACAGGGTTCTCCCACCATGCCTTTCTAGAAGGGGATACGCAATCCCAAGAGCAACCGATCAACCGGTCATTAGGGGAAAGCATACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 90 bp GCGAGTGGTATGCTTTCCCCTAATGACCGGTTGATCGGTTGCTCTTaGGATTGCGTATCCCCTTCTAGAAAGGCATGGTGGGAGAACCCT +
Preference number: 5 (lower is better)
Translates to: ASGMLSPNDRLIGCS*DCVSPSRKAWWENP
Trigger: AGGGTTCTCCCACCATGCCTTTCTAGAAGGGGATACGCAATCCCAAGAGCAACCGATCAACCGGTCATTAGGGGAAAGCATACCACTCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGCTCCCTCTTCGCTGCTaGGCTTTCTGGGAACACAGA +
Preference number: 5 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLLPLRC*AFWEHR
Trigger: TCTGTGTTCCCAGAAAGCCAAGCAGCGAAGAGGGAG...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGCATCATGGTGTCGGGTaGGAGAACGTGACCTTCGTG +
Preference number: 5 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLHHGVG*ENVTFV
Trigger: CACGAAGGTCACGTTCTCCAACCCGACACCATGATG...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS TCA 90 bp GTAGCTTTTTGCTGGAGCTTTCTCCGTGGATATGCCGCCTGGGCATaGACGGTGATGGCTGAGGCAGAGGTAGTGAAGATTCATCATGTG +
Preference number: 5 (lower is better)
Translates to: VAFCWSFLRGYAAWA*TVMAEAEVVKIHHV
Trigger: CACATGATGAATCTTCACTACCTCTGCCTCAGCCATCACCGTTCATGCCCAGGCGGCATATCCACGGAGAAAGCTCCAGCAAAAAGCTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS TCA 90 bp ACCATCTTCCGCATTTCAGCCGCCATTCCCGTTTCCGTACTCCTCTaGATGGTGCTTTTTAACTTCTTGTGGCCGGACTCTGTCTGGCTG +
Preference number: 5 (lower is better)
Translates to: TIFRISAAIPVSVLL*MVLFNFLWPDSVWL
Trigger: CAGCCAGACAGAGTCCGGCCACAAGAAGTTAAAAAGCACCATTCAGAGGAGTACGGAAACGGGAATGGCGGCTGAAATGCGGAAGATGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATCAGGTCGGGCAGTTCTaGCATAGGGGGAGGCACCGT +
Preference number: 5 (lower is better)
Translates to: GACSTYTGHKGNYEEYANQVGQF*HRGRHR
Trigger: ACGGTGCCTCCCCCTATGCAAGAACTGCCCGACCTG...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCATCACTATCTGATGACTaGGCGGACGCGTTATCACAG +
Preference number: 5 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSSLSDD*ADALSQ
Trigger: CTGTGATAACGCGTCCGCCAAGTCATCAGATAGTGA...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCAGTGCTTTTTAACTTCTaGTGGCCGGACTCTGTCTGG +
Preference number: 5 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSVLFNF*WPDSVW
Trigger: CCAGACAGAGTCCGGCCACAAGAAGTTAAAAAGCAC...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATATGGGGTGGCGAGGGTTaGGCGGCCGACAAGCTGGGC +
Preference number: 5 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKIWGGEG*AADKLG
Trigger: GCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCCA...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS TCA 90 bp GAGCTTTCTCCGTGGATATGCCGCCTGGGCATGAACGGTGATGGCTaGGGCAGAGGTAGTGAAGATTCATCATGTGTCTGCAGTTTATAC +
Preference number: 5 (lower is better)
Translates to: ELSPWICRLGMNGDG*GRGSEDSSCVCSLY
Trigger: GTATAAACTGCAGACACATGATGAATCTTCACTACCTCTGCCTCAGCCATCACCGTTCATGCCCAGGCGGCATATCCACGGAGAAAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGCAGGTCGGGCAGTTCTaGCATAGGGGGAGGCACCGT +
Preference number: 5 (lower is better)
Translates to: AILNSSYYALSRADKSTLQVGQF*HRGRHR
Trigger: ACGGTGCCTCCCCCTATGCAAGAACTGCCCGACCTG...CAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp AGACTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGGTGGCTCACTTCTaGACCTTGATGCCTGCTTCT +
Preference number: 5 (lower is better)
Translates to: RLGRTVNWLPLIPFPGFTLVAHF*TLMPAS
Trigger: AGAAGCAGGCATCAAGGTCAAGAAGTGAGCCACCAA...GGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGTGCTTTTTAACTTCTaGTGGCCGGACTCTGTCTGG +
Preference number: 5 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLVLFNF*WPDSVW
Trigger: CCAGACAGAGTCCGGCCACAAGAAGTTAAAAAGCAC...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS TCA 90 bp TGTGTAGGCATTCTGCACTTCGTCCTCGTTTTGCTCTGGGCAGCATaGGAAGCTCACTGTCTGGCTCTGATGAATACTGACTTTCCGCAT +
Preference number: 5 (lower is better)
Translates to: CVGILHFVLVLLWAA*EAHCLALMNTDFPH
Trigger: ATGCGGAAAGTCAGTATTCATCAGAGCCAGACAGTGAGCTTCTCATGCTGCCCAGAGCAAAACGAGGACGAAGTGCAGAATGCCTACACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCAGGTCGGGCAGTTCTaGCATAGGGGGAGGCACCGT +
Preference number: 5 (lower is better)
Translates to: SAILNSSYYALSRADKSTQVGQF*HRGRHR
Trigger: ACGGTGCCTCCCCCTATGCAAGAACTGCCCGACCTG...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGTCCCTGACAACACACTaGAGCATGGCCTCTTCTTTT +
Preference number: 5 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLSLTTH*SMASSF
Trigger: AAAAGAAGAGGCCATGCTCAAGTGTGTTGTCAGGGA...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GTTTGGTGTGTGTGTGAACTTGAGGTTTCCTTCCCCTCTCTCTCTCTCTCTCTCTTGGTGGCTCACTTCTaGACCTTGATGCCTGCTTCT +
Preference number: 5 (lower is better)
Translates to: VWCVCELEVSFPSLSLSLLVAHF*TLMPAS
Trigger: AGAAGCAGGCATCAAGGTCAAGAAGTGAGCCACCAA...GAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACACACACCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCAAAACTTCTTCGTTTGTaGCTCCCGGCAGGGGTTTAC +
Preference number: 5 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPKLLRL*LPAGVY
Trigger: GTAAACCCCTGCCGGGAGCAACAAACGAAGAAGTTT...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GTTTGGTGTGTGTGTGAACTTGAGGTTTCCTTCCCCTCTCTCTCTCTCTCTCTCTGTAAACTTCTTCGTTaGTTGCTCCCGGCAGGGGTT +
Preference number: 5 (lower is better)
Translates to: VWCVCELEVSFPSLSLSLCKLLR*LLPAGV
Trigger: AACCCCTGCCGGGAGCAACAAACGAAGAAGTTTACA...GAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACACACACCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCATGTAAACTTCTTCGTTaGTTGCTCCCGGCAGGGGTT +
Preference number: 5 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPCKLLR*LLPAGV
Trigger: AACCCCTGCCGGGAGCAACAAACGAAGAAGTTTACA...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp CAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGATCTTTGTAGCTTTTaGCTGGAGCTTTCTCCGTGG +
Preference number: 5 (lower is better)
Translates to: QVYSGAWLRSLGIAESVLDLCSF*LELSPW
Trigger: CCACGGAGAAAGCTCCAGCAAAAAGCTACAAAGATC...TAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTGAAAGTGTCTTAGGCTCAAACGTGACCTTCGTGTaGGATGGATTTCATCTAAGC +
Preference number: 5 (lower is better)
Translates to: YSGAWLRSLGIAESVLGSNVTFV*DGFHLS
Trigger: GCTTAGATGAAATCCATCCAACACGAAGGTCACGTT...TGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATTGGGGTGGCGAGGGTTaGGCGGCCGACAAGCTGGGC +
Preference number: 5 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYWGGEG*AADKLG
Trigger: GCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCCA...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CAA 90 bp CAGATACGCTCTTCACTGAGAAGTGATTCTGCAACTACTAGTTTGGGTGATGATCTGGGTGGGGCTTCCTaGTCGGTGCGTTCTTGTCAG +
Preference number: 5 (lower is better)
Translates to: QIRSSLRSDSATTSLGDDLGGAS*SVRSCQ
Trigger: CTGACAAGAACGCACCGACAAGGAAGCCCCACCCAG...ATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 90 bp CTAGGGGGTAGATCTGTTGCTTGTAGAACATTTACAATCAGCTGGTaGCCCACCTTATCATACCACAGCTTCACTGAGAGTTGCCCTGGT +
Preference number: 5 (lower is better)
Translates to: LGGRSVACRTFTISW*PTLSYHSFTESCPG
Trigger: ACCAGGGCAACTCTCAGTGAAGCTGTGGTATGATAAGGTGGGGCACCAGCTGATTGTAAATGTTCTACAAGCAACAGATCTACCCCCTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 90 bp TTCCTTGTAGCTTTCAAACTGTTGATGCAATCTCCAGTTTCTGTCTaGGCCTCCCTCTTCGCTGCTTGGCTTTCTGGGAACACAGACACA +
Preference number: 5 (lower is better)
Translates to: FLVAFKLLMQSPVSV*ASLFAAWLSGNTDT
Trigger: TGTGTCTGTGTTCCCAGAAAGCCAAGCAGCGAAGAGGGAGGCCCAGACAGAAACTGGAGATTGCATCAACAGTTTGAAAGCTACAAGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTAAGGGCGTCTGAGACCTaGATCGCTCTTGGAGCCGAG +
Preference number: 5 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVRASET*IALGAE
Trigger: CTCGGCTCCAAGAGCGATCAAGGTCTCAGACGCCCT...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GTTTGGTGTGTGTGTGAACTTGAGGTTTCCTTCCCCTCTCTCTCTCTCTCTCTCGATCTTTGTAGCTTTTaGCTGGAGCTTTCTCCGTGG +
Preference number: 5 (lower is better)
Translates to: VWCVCELEVSFPSLSLSLDLCSF*LELSPW
Trigger: CCACGGAGAAAGCTCCAGCAAAAAGCTACAAAGATC...GAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACACACACCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp CTCTCTCTCTCTCTTTCCTATTTGCAAGAAGTGTCAGTGGCTCTCACTAGCATGTTTGGAGCCAGGTTTTaGTGTAAGGCTCCGGGCTCT +
Preference number: 5 (lower is better)
Translates to: LSLSLSYLQEVSVALTSMFGARF*CKAPGS
Trigger: AGAGCCCGGAGCCTTACACAAAAACCTGGCTCCAAA...CATGCTAGTGAGAGCCACTGACACTTCTTGCAAATAGGAAAGAGAGAGAGAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CAA 90 bp TTTCCAGGGCAGACAAGTCTACTCTGGGGCATGGCTGAGAAGCCTGGGCATAGCTTTTCCGTGCAATTCTaGTCTTCTTTTTGGCAATAC +
Preference number: 5 (lower is better)
Translates to: FPGQTSLLWGMAEKPGHSFSVQF*SSFWQY
Trigger: GTATTGCCAAAAAGAAGACAAGAATTGCACGGAAAA...GCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTTGTCTGCCCTGGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CAA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTACTGGGTGGGGCTTCCTaGTCGGTGCGTTCTTGTCAG +
Preference number: 5 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVLGGAS*SVRSCQ
Trigger: CTGACAAGAACGCACCGACAAGGAAGCCCCACCCAG...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 90 bp ACTCTAGGGGGTAGATCTGTTGCTTGTAGAACATTTACAATCAGCTaGTGCCCCACCTTATCATACCACAGCTTCACTGAGAGTTGCCCT +
Preference number: 5 (lower is better)
Translates to: TLGGRSVACRTFTIS*CPTLSYHSFTESCP
Trigger: AGGGCAACTCTCAGTGAAGCTGTGGTATGATAAGGTGGGGCACCAGCTGATTGTAAATGTTCTACAAGCAACAGATCTACCCCCTAGAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 90 bp AGAACCCTGTCTGCATCAGAGGCTGTGCCTTTCCTAGACTGTTTTTaGATGCTAGATCTTTCAGACTTTCTGGAGTGCCTGTCATTCTCC +
Preference number: 5 (lower is better)
Translates to: RTLSASEAVPFLDCF*MLDLSDFLECLSFS
Trigger: GGAGAATGACAGGCACTCCAGAAAGTCTGAAAGATCTAGCATCCAAAAACAGTCTAGGAAAGGCACAGCCTCTGATGCAGACAGGGTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
CDS-3UTR CAA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTGCATTTCTTGGTGTTTaGCAGGCAGCAGGCTTCGCC +
Preference number: 5 (lower is better)
Translates to: SSAILNSSYYALSRADKSAFLGV*QAAGFA
Trigger: GGCGAAGCCTGCTGCCTGCAAAACACCAAGAAATGC...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp CAGATACGCTCTTCACTGAGAAGTGATTCTGCAACTACTAGTTTGGGTGATGATGCATTTCTTGGTGTTTaGCAGGCAGCAGGCTTCGCC +
Preference number: 5 (lower is better)
Translates to: QIRSSLRSDSATTSLGDDAFLGV*QAAGFA
Trigger: GGCGAAGCCTGCTGCCTGCAAAACACCAAGAAATGC...ATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp CAGATACGCTCTTCACTGAGAAGTGATTCTGCAACTACTAGTTTGGGTGATGATCTCCCTCTTCGCTGCTaGGCTTTCTGGGAACACAGA +
Preference number: 5 (lower is better)
Translates to: QIRSSLRSDSATTSLGDDLPLRC*AFWEHR
Trigger: TCTGTGTTCCCAGAAAGCCAAGCAGCGAAGAGGGAG...ATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGCTCCCTCTTCGCTGCTaGGCTTTCTGGGAACACAGA +
Preference number: 5 (lower is better)
Translates to: AILNSSYYALSRADKSTLLPLRC*AFWEHR
Trigger: TCTGTGTTCCCAGAAAGCCAAGCAGCGAAGAGGGAG...CAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGTTGGTGGCTCACTTCTaGACCTTGATGCCTGCTTCT +
Preference number: 5 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMLVAHF*TLMPAS
Trigger: AGAAGCAGGCATCAAGGTCAAGAAGTGAGCCACCAA...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TTGTTCTGTCATACGAAGCCATGTTTTAAACAACAATTGGGACACAATTATCGATTCTCGCGCTTGGCCTaGCGCAGGAGCACAGCCGAG +
Preference number: 5 (lower is better)
Translates to: LFCHTKPCFKQQLGHNYRFSRLA*RRSTAE
Trigger: CTCGGCTGTGCTCCTGCGCAAGGCCAAGCGCGAGAA...TCGATAATTGTGTCCCAATTGTTGTTTAAAACATGGCTTCGTATGACAGAACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGAATGCACCTGATTCTTaGGGCATGGTTGTTCTTTTG +
Preference number: 5 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLNAPDS*GMVVLL
Trigger: CAAAAGAACAACCATGCCCAAAGAATCAGGTGCATT...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTCATCATGGTGTCGGGTaGGAGAACGTGACCTTCGTG +
Preference number: 5 (lower is better)
Translates to: SSAILNSSYYALSRADKSHHGVG*ENVTFV
Trigger: CACGAAGGTCACGTTCTCCAACCCGACACCATGATG...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GTTTGGTGTGTGTGTGAACTTGAGGTTTCCTTCCCCTCTCTCTCTCTCTCTCTCGTTGTACTTGGAGTATaGCTCGTGGTCAAGTTCTTG +
Preference number: 5 (lower is better)
Translates to: VWCVCELEVSFPSLSLSLVVLGV*LVVKFL
Trigger: CAAGAACTTGACCACGAGCAATACTCCAAGTACAAC...GAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACACACACCAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCTTTGGAGCCAGGTTTTaGTGTAAGGCTCCGGGCTCT +
Preference number: 5 (lower is better)
Translates to: KMHAALNSSRSCCSNCEIFGARF*CKAPGS
Trigger: AGAGCCCGGAGCCTTACACAAAAACCTGGCTCCAAA...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CAA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGTTCTTCCAACAAGATTaGAGCCACACCCATAAAGCA +
Preference number: 5 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLFFQQD*SHTHKA
Trigger: TGCTTTATGGGTGTGGCTCAAATCTTGTTGGAAGAA...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS CCA 90 bp AGAACCCTGTCTGCATCAGAGGCTGTGCCTTTCCTAGACTGTTTTTaGATGCTAGATCTTTCAGACTTTCTGGAGTGCCTTTCTCGTTCT +
Preference number: 5 (lower is better)
Translates to: RTLSASEAVPFLDCF*MLDLSDFLECLSRS
Trigger: AGAACGAGAAAGGCACTCCAGAAAGTCTGAAAGATCTAGCATCCAAAAACAGTCTAGGAAAGGCACAGCCTCTGATGCAGACAGGGTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGAATGTTCAGTGGTGGTaGATGGGGCTGGCTTTCAGC +
Preference number: 5 (lower is better)
Translates to: AILNSSYYALSRADKSTLNVQWW*MGLAFS
Trigger: GCTGAAAGCCAGCCCCATCAACCACCACTGAACATT...CAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGATGGGAAGCAGTGTCTaGGGAAGAGACAGCTGCTGT +
Preference number: 5 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVMGSSV*GRDSCC
Trigger: ACAGCAGCTGTCTCTTCCCAAGACACTGCTTCCCAT...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGATGGGAAGCAGTGTCTaGGGAAGAGACAGCTGCTGT +
Preference number: 5 (lower is better)
Translates to: AILNSSYYALSRADKSTLMGSSV*GRDSCC
Trigger: ACAGCAGCTGTCTCTTCCCAAGACACTGCTTCCCAT...CAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATGCTCACTTCTTGACCTaGATGCCTGCTTCTGTTCAG +
Preference number: 5 (lower is better)
Translates to: GACSTYTGHKGNYEEYANAHFLT*MPASVQ
Trigger: CTGAACAGAAGCAGGCATCAAGGTCAAGAAGTGAGC...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp ACTACTACAGGCAAAACACAAGTTGATTGTCTGTCTCCAACAATGCTCTTGATCCTCTTCTGGCCTCCCTaGCCATTCTGCTCTGAAAGC +
Preference number: 5 (lower is better)
Translates to: TTTGKTQVDCLSPTMLLILFWPP*PFCSES
Trigger: GCTTTCAGAGCAGAATGGCAAGGGAGGCCAGAAGAG...GATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GTTTGGTGTGTGTGTGAACTTGAGGTTTCCTTCCCCTCTCTCTCTCTCTCTCTCCTACCCTTCTTTACTTaGGTGATGAAAGCACCAAGA +
Preference number: 5 (lower is better)
Translates to: VWCVCELEVSFPSLSLSLLPFFT*VMKAPR
Trigger: TCTTGGTGCTTTCATCACCAAAGTAAAGAAGGGTAG...GAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACACACACCAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTACATCATGGTGTCGGGTaGGAGAACGTGACCTTCGTG +
Preference number: 5 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVHHGVG*ENVTFV
Trigger: CACGAAGGTCACGTTCTCCAACCCGACACCATGATG...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCGTCTGCCTTGCATTTaGGGGGTAAATGAACTGATC +
Preference number: 5 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMRLPCI*GVNELI
Trigger: GATCAGTTCATTTACCCCCAAAATGCAAGGCAGACG...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATGACTGGCTGCCGTCATaGTGCTCCAGTGTATATATC +
Preference number: 5 (lower is better)
Translates to: GACSTYTGHKGNYEEYANDWLPS*CSSVYI
Trigger: GATATATACACTGGAGCACAATGACGGCAGCCAGTC...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGTTTGGAGCCAGGTTTTaGTGTAAGGCTCCGGGCTCT +
Preference number: 5 (lower is better)
Translates to: AILNSSYYALSRADKSTLFGARF*CKAPGS
Trigger: AGAGCCCGGAGCCTTACACAAAAACCTGGCTCCAAA...CAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CAA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTTCTGGTCTCAAGCAGTaGGTACTAGCACTCCTAGCC +
Preference number: 5 (lower is better)
Translates to: SSAILNSSYYALSRADKSSGLKQ*VLALLA
Trigger: GGCTAGGAGTGCTAGTACCAACTGCTTGAGACCAGA...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTCTGGTCTCAAGCAGTaGGTACTAGCACTCCTAGCC +
Preference number: 5 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVSGLKQ*VLALLA
Trigger: GGCTAGGAGTGCTAGTACCAACTGCTTGAGACCAGA...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp ACTACTACAGGCAAAACACAAGTTGATTGTCTGTCTCCAACAATGCTCTTGATCAGACGCATGCTGGATTaGAATCCTGGGGCTAGCAGG +
Preference number: 5 (lower is better)
Translates to: TTTGKTQVDCLSPTMLLIRRMLD*NPGASR
Trigger: CCTGCTAGCCCCAGGATTCAAATCCAGCATGCGTCT...GATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097809.11
CDS-3UTR CAA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCAGTAGCTTTCAAACTGTaGATGCAATCTCCAGTTTCT +
Preference number: 5 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPVAFKL*MQSPVS
Trigger: AGAAACTGGAGATTGCATCAACAGTTTGAAAGCTAC...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATAGGGCGTCTGAGACCTaGATCGCTCTTGGAGCCGAG +
Preference number: 5 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYRASET*IALGAE
Trigger: CTCGGCTCCAAGAGCGATCAAGGTCTCAGACGCCCT...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTGCTCACTTCTTGACCTaGATGCCTGCTTCTGTTCAG +
Preference number: 5 (lower is better)
Translates to: SSAILNSSYYALSRADKSAHFLT*MPASVQ
Trigger: CTGAACAGAAGCAGGCATCAAGGTCAAGAAGTGAGC...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp AAGTGTCTTAGGCTCAAATCCATTCTTAGTCACCATTTTGGGGAGTTGAGAGCAGCTCACTTCTTGACCTaGATGCCTGCTTCTGTTCAG +
Preference number: 5 (lower is better)
Translates to: KCLRLKSILSHHFGELRAAHFLT*MPASVQ
Trigger: CTGAACAGAAGCAGGCATCAAGGTCAAGAAGTGAGC...TGCTCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTCACTATCTGATGACTaGGCGGACGCGTTATCACAG +
Preference number: 5 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVSLSDD*ADALSQ
Trigger: CTGTGATAACGCGTCCGCCAAGTCATCAGATAGTGA...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTCACTATCTGATGACTaGGCGGACGCGTTATCACAG +
Preference number: 5 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVSLSDD*ADALSQ
Trigger: CTGTGATAACGCGTCCGCCAAGTCATCAGATAGTGA...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCGTGCTTTTTAACTTCTaGTGGCCGGACTCTGTCTGG +
Preference number: 5 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVVLFNF*WPDSVW
Trigger: CCAGACAGAGTCCGGCCACAAGAAGTTAAAAAGCAC...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp CTTGGAAGAACTGTAAACTGGCTGCCGCTGATACCCTTCCCTGGCTTTACCTTGTTTTCCGTGCAATTCTaGTCTTCTTTTTGGCAATAC +
Preference number: 5 (lower is better)
Translates to: LGRTVNWLPLIPFPGFTLFSVQF*SSFWQY
Trigger: GTATTGCCAAAAAGAAGACAAGAATTGCACGGAAAA...CAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CAA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTTCCCCTAATGACCGGTaGATCGGTTGCTCTTGGGAT +
Preference number: 5 (lower is better)
Translates to: SAILNSSYYALSRADKSTSPNDR*IGCSWD
Trigger: ATCCCAAGAGCAACCGATCAACCGGTCATTAGGGGA...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTAAAACTTCTTCGTTTGTaGCTCCCGGCAGGGGTTTAC +
Preference number: 5 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVKLLRL*LPAGVY
Trigger: GTAAACCCCTGCCGGGAGCAACAAACGAAGAAGTTT...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTTGTAAACTTCTTCGTTaGTTGCTCCCGGCAGGGGTT +
Preference number: 5 (lower is better)
Translates to: SAILNSSYYALSRADKSTCKLLR*LLPAGV
Trigger: AACCCCTGCCGGGAGCAACAAACGAAGAAGTTTACA...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTCTGTAATGGCACATTaGGTAAACGTGAACGAGGCC +
Preference number: 5 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVSVMAH*VNVNEA
Trigger: GGCCTCGTTCACGTTTACCAAATGTGCCATTACAGA...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp AAGTGTCTTAGGCTCAAATCCATTCTTAGTCACCATTTTGGGGAGTTGAGAGCATCTGTAATGGCACATTaGGTAAACGTGAACGAGGCC +
Preference number: 5 (lower is better)
Translates to: KCLRLKSILSHHFGELRASVMAH*VNVNEA
Trigger: GGCCTCGTTCACGTTTACCAAATGTGCCATTACAGA...TGCTCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCCGTCTGCCTTGCATTTaGGGGGTAAATGAACTGATC +
Preference number: 5 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVRLPCI*GVNELI
Trigger: GATCAGTTCATTTACCCCCAAAATGCAAGGCAGACG...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTCGTCTGCCTTGCATTTaGGGGGTAAATGAACTGATC +
Preference number: 5 (lower is better)
Translates to: SSAILNSSYYALSRADKSRLPCI*GVNELI
Trigger: GATCAGTTCATTTACCCCCAAAATGCAAGGCAGACG...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTCTTACACTGGTGCTCTaGATGATGGCTCTTCCTGAA +
Preference number: 5 (lower is better)
Translates to: SSAILNSSYYALSRADKSLTLVL*MMALPE
Trigger: TTCAGGAAGAGCCATCATCAAGAGCACCAGTGTAAG...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGCTTACACTGGTGCTCTaGATGATGGCTCTTCCTGAA +
Preference number: 5 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVLTLVL*MMALPE
Trigger: TTCAGGAAGAGCCATCATCAAGAGCACCAGTGTAAG...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GTTGAACGACTCATAAAAGGAGAGGGGGTGCATATTGATGCAGCTGCAGGACCAATTCTTGTCTTCTTTTaGGCAATACAGGCTCCATTT +
Preference number: 5 (lower is better)
Translates to: VERLIKGEGVHIDAAAGPILVFF*AIQAPF
Trigger: AAATGGAGCCTGTATTGCCAAAAAGAAGACAAGAAT...TGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS TCA 90 bp TCTTTATGTATGTTGTACTTGGAGTATTGCTCGTGGTCAAGTTCTTaGCTAGACCCAGACCCTGTTGTCTGCTTAAATCGGTGTACCTTC +
Preference number: 5 (lower is better)
Translates to: SLCMLYLEYCSWSSS*LDPDPVVCLNRCTF
Trigger: GAAGGTACACCGATTTAAGCAGACAACAGGGTCTGGGTCTAGTCAAGAACTTGACCACGAGCAATACTCCAAGTACAACATACATAAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS TCA 90 bp TCACTATCTGATGACTTGGCGGACGCGTTATCACAGCTTCTGTACTaGTCTTTATGTATGTTGTACTTGGAGTATTGCTCGTGGTCAAGT +
Preference number: 5 (lower is better)
Translates to: SLSDDLADALSQLLY*SLCMLYLEYCSWSS
Trigger: ACTTGACCACGAGCAATACTCCAAGTACAACATACATAAAGATCAGTACAGAAGCTGTGATAACGCGTCCGCCAAGTCATCAGATAGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGAATGTTCAGTGGTGGTaGATGGGGCTGGCTTTCAGC +
Preference number: 5 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILNVQWW*MGLAFS
Trigger: GCTGAAAGCCAGCCCCATCAACCACCACTGAACATT...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATCTCTTCTGGCCTCCCTaGCCATTCTGCTCTGAAAGC +
Preference number: 5 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYLFWPP*PFCSES
Trigger: GCTTTCAGAGCAGAATGGCAAGGGAGGCCAGAAGAG...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp CAGATACGCTCTTCACTGAGAAGTGATTCTGCAACTACTAGTTTGGGTGATGATGGCATGGTTGTTCTTTaGTTAAGAATAACACGGCCG +
Preference number: 5 (lower is better)
Translates to: QIRSSLRSDSATTSLGDDGMVVL*LRITRP
Trigger: CGGCCGTGTTATTCTTAACAAAAGAACAACCATGCC...ATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGCAAATCTACCCTTCTTTACTTaGGTGATGAAAGCACCAAGA +
Preference number: 5 (lower is better)
Translates to: GACSTYTGHKGNYEEYANLPFFT*VMKAPR
Trigger: TCTTGGTGCTTTCATCACCAAAGTAAAGAAGGGTAG...ATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp ACTACTACAGGCAAAACACAAGTTGATTGTCTGTCTCCAACAATGCTCTTGATCGATCTTTGTAGCTTTTaGCTGGAGCTTTCTCCGTGG +
Preference number: 5 (lower is better)
Translates to: TTTGKTQVDCLSPTMLLIDLCSF*LELSPW
Trigger: CCACGGAGAAAGCTCCAGCAAAAAGCTACAAAGATC...GATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTATCTGTAATGGCACATTaGGTAAACGTGAACGAGGCC +
Preference number: 5 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVSVMAH*VNVNEA
Trigger: GGCCTCGTTCACGTTTACCAAATGTGCCATTACAGA...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp CAGATACGCTCTTCACTGAGAAGTGATTCTGCAACTACTAGTTTGGGTGATGATAACGTGACCTTCGTGTaGGATGGATTTCATCTAAGC +
Preference number: 5 (lower is better)
Translates to: QIRSSLRSDSATTSLGDDNVTFV*DGFHLS
Trigger: GCTTAGATGAAATCCATCCAACACGAAGGTCACGTT...ATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp AAGTGTCTTAGGCTCAAATCCATTCTTAGTCACCATTTTGGGGAGTTGAGAGCAAACGTGACCTTCGTGTaGGATGGATTTCATCTAAGC +
Preference number: 5 (lower is better)
Translates to: KCLRLKSILSHHFGELRANVTFV*DGFHLS
Trigger: GCTTAGATGAAATCCATCCAACACGAAGGTCACGTT...TGCTCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTGTTGTACTTGGAGTATaGCTCGTGGTCAAGTTCTTG +
Preference number: 5 (lower is better)
Translates to: SSAILNSSYYALSRADKSVVLGV*LVVKFL
Trigger: CAAGAACTTGACCACGAGCAATACTCCAAGTACAAC...AGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TTGTTCTGTCATACGAAGCCATGTTTTAAACAACAATTGGGACACAATTATCGAAATGTTCAGTGGTGGTaGATGGGGCTGGCTTTCAGC +
Preference number: 5 (lower is better)
Translates to: LFCHTKPCFKQQLGHNYRNVQWW*MGLAFS
Trigger: GCTGAAAGCCAGCCCCATCAACCACCACTGAACATT...TCGATAATTGTGTCCCAATTGTTGTTTAAAACATGGCTTCGTATGACAGAACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TTGTTCTGTCATACGAAGCCATGTTTTAAACAACAATTGGGACACAATTATCGAATGGGAAGCAGTGTCTaGGGAAGAGACAGCTGCTGT +
Preference number: 5 (lower is better)
Translates to: LFCHTKPCFKQQLGHNYRMGSSV*GRDSCC
Trigger: ACAGCAGCTGTCTCTTCCCAAGACACTGCTTCCCAT...TCGATAATTGTGTCCCAATTGTTGTTTAAAACATGGCTTCGTATGACAGAACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTAGGCATGGTTGTTCTTTaGTTAAGAATAACACGGCCG +
Preference number: 5 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVGMVVL*LRITRP
Trigger: CGGCCGTGTTATTCTTAACAAAAGAACAACCATGCC...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp AGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTGGCATGGTTGTTCTTTaGTTAAGAATAACACGGCCG +
Preference number: 5 (lower is better)
Translates to: SAILNSSYYALSRADKSTGMVVL*LRITRP
Trigger: CGGCCGTGTTATTCTTAACAAAAGAACAACCATGCC...AGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGCTACCCTTCTTTACTTaGGTGATGAAAGCACCAAGA +
Preference number: 5 (lower is better)
Translates to: AILNSSYYALSRADKSTLLPFFT*VMKAPR
Trigger: TCTTGGTGCTTTCATCACCAAAGTAAAGAAGGGTAG...CAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATACTTACACTGGTGCTCTaGATGATGGCTCTTCCTGAA +
Preference number: 5 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKILTLVL*MMALPE
Trigger: TTCAGGAAGAGCCATCATCAAGAGCACCAGTGTAAG...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGGACTGGCTGCCGTCATaGTGCTCCAGTGTATATATC +
Preference number: 5 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILDWLPS*CSSVYI
Trigger: GATATATACACTGGAGCACAATGACGGCAGCCAGTC...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATTTTGGAGCCAGGTTTTaGTGTAAGGCTCCGGGCTCT +
Preference number: 5 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYFGARF*CKAPGS
Trigger: AGAGCCCGGAGCCTTACACAAAAACCTGGCTCCAAA...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CAA 90 bp AAGCAGGCGCCTGCAGCACATACACAGGTCACAAGGGAAATTATGAAGAATATGTTTTCCGTGCAATTCTaGTCTTCTTTTTGGCAATAC +
Preference number: 5 (lower is better)
Translates to: KQAPAAHTQVTREIMKNMFSVQF*SSFWQY
Trigger: GTATTGCCAAAAAGAAGACAAGAATTGCACGGAAAA...CATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CAA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATTCCCCTAATGACCGGTaGATCGGTTGCTCTTGGGAT +
Preference number: 5 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYSPNDR*IGCSWD
Trigger: ATCCCAAGAGCAACCGATCAACCGGTCATTAGGGGA...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGTCCCTGACAACACACTaGAGCATGGCCTCTTCTTTT +
Preference number: 5 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILSLTTH*SMASSF
Trigger: AAAAGAAGAGGCCATGCTCAAGTGTGTTGTCAGGGA...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGGTAGCTTTCAAACTGTaGATGCAATCTCCAGTTTCT +
Preference number: 5 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVVAFKL*MQSPVS
Trigger: AGAAACTGGAGATTGCATCAACAGTTTGAAAGCTAC...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCGTAGCTTTCAAACTGTaGATGCAATCTCCAGTTTCT +
Preference number: 5 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVVAFKL*MQSPVS
Trigger: AGAAACTGGAGATTGCATCAACAGTTTGAAAGCTAC...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTAAATGCACCTGATTCTTaGGGCATGGTTGTTCTTTTG +
Preference number: 5 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVNAPDS*GMVVLL
Trigger: CAAAAGAACAACCATGCCCAAAGAATCAGGTGCATT...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATAAACTTCTTCGTTTGTaGCTCCCGGCAGGGGTTTAC +
Preference number: 5 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYKLLRL*LPAGVY
Trigger: GTAAACCCCTGCCGGGAGCAACAAACGAAGAAGTTT...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTATTCTTCCAACAAGATTaGAGCCACACCCATAAAGCA +
Preference number: 5 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVFFQQD*SHTHKA
Trigger: TGCTTTATGGGTGTGGCTCAAATCTTGTTGGAAGAA...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CAA 90 bp AAAATGCATGCAGCTTTGAACAGCTCCAGGTCATGCTGCTCTAACTGTGAAATCTGTAATAAAGGCATCTaGGGTGGTAATGTTTTAGAG +
Preference number: 5 (lower is better)
Translates to: KMHAALNSSRSCCSNCEICNKGI*GGNVLE
Trigger: CTCTAAAACATTACCACCCAAGATGCCTTTATTACA...GATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097809.11
CDS-3UTR CAA 90 bp GTCCACTTAAAAGCACAAGGGGTTGTTAAGACAAGTGGTCAAGATAGAAAGATAAATGCACCTGATTCTTaGGGCATGGTTGTTCTTTTG +
Preference number: 5 (lower is better)
Translates to: VHLKAQGVVKTSGQDRKINAPDS*GMVVLL
Trigger: CAAAAGAACAACCATGCCCAAAGAATCAGGTGCATT...TATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTGTGCTTTTAAGTGGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp GCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCTACTCTGATTCTTGTCTTCTTTTaGGCAATACAGGCTCCATTT +
Preference number: 5 (lower is better)
Translates to: AILNSSYYALSRADKSTLILVFF*AIQAPF
Trigger: AAATGGAGCCTGTATTGCCAAAAAGAAGACAAGAAT...CAGAGTAGACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CAA 90 bp TTCCAGTGCAATATTAAACAGCTCATACTATGCTCTTTCCAGGGCAGACAAGTCATTCTTGTCTTCTTTTaGGCAATACAGGCTCCATTT +
Preference number: 5 (lower is better)
Translates to: FQCNIKQLILCSFQGRQVILVFF*AIQAPF
Trigger: AAATGGAGCCTGTATTGCCAAAAAGAAGACAAGAAT...GACTTGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CAA 90 bp GCAACTACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTTTCCTAGACTGTTTTaGGATGCTAGATCTTTCAGA +
Preference number: 5 (lower is better)
Translates to: ATTSLGDDFYCLCVCVCVFPRLF*DARSFR
Trigger: TCTGAAAGATCTAGCATCCAAAAACAGTCTAGGAAA...CACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp TCTAGGTCCTTCAAAGTCTTCTGTGCCAAACAATGGAAAATAGCAATGAATTATGTTGTACTTGGAGTATaGCTCGTGGTCAAGTTCTTG +
Preference number: 5 (lower is better)
Translates to: SRSFKVFCAKQWKIAMNYVVLGV*LVVKFL
Trigger: CAAGAACTTGACCACGAGCAATACTCCAAGTACAAC...ATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS-3UTR CAA 90 bp ACTACTACAGGCAAAACACAAGTTGATTGTCTGTCTCCAACAATGCTCTTGATCATTCTTGTCTTCTTTTaGGCAATACAGGCTCCATTT +
Preference number: 5 (lower is better)
Translates to: TTTGKTQVDCLSPTMLLIILVFF*AIQAPF
Trigger: AAATGGAGCCTGTATTGCCAAAAAGAAGACAAGAAT...GATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CAA 90 bp ACTAGTTTGGGTGATGATTTTTACTGTCTGTGTGTGTGTGTGTGTGTGTGTGTATTTTCCGTGCAATTCTaGTCTTCTTTTTGGCAATAC +
Preference number: 5 (lower is better)
Translates to: TSLGDDFYCLCVCVCVCVFSVQF*SSFWQY
Trigger: GTATTGCCAAAAAGAAGACAAGAATTGCACGGAAAA...TACACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS-3UTR CAA 90 bp CTGTCTCCAACAATGCTCTTGATCATGAAATATCTGGTTCTGATAATTATCCTGTTTCCTAGACTGTTTTaGGATGCTAGATCTTTCAGA +
Preference number: 5 (lower is better)
Translates to: LSPTMLLIMKYLVLIIILFPRLF*DARSFR
Trigger: TCTGAAAGATCTAGCATCCAAAAACAGTCTAGGAAA...CAGGATAATTATCAGAACCAGATATTTCATGATCAAGAGCATTGTTGGAGACAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp GCGGCAGCCTCGGTGTGCGGGAGCGCCACGTCGCTGTaGCGCCGCTCGTGCCTCGCTCGGGACACCCGGGCG +
Preference number: 6 (lower is better)
Translates to: AAASVCGSATSL*RRSCLARDTRA
Trigger: CGCCCGGGTGTCCCGAGCGAGGCACGAGCGGCGCCACAGCGACGTGGCGCTCCCGCACACCGAGGCTGCCGC
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp GCGCGCGTGCGCGCGGGGACTCCGGGGGAGAGACCCTaGCGGTGGTCTGCGCGCGCTTGCCCGCCGTGGTCT +
Preference number: 6 (lower is better)
Translates to: ARVRAGTPGERP*RWSARACPPWS
Trigger: AGACCACGGCGGGCAAGCGCGCGCAGACCACCGCCAGGGTCTCTCCCCCGGAGTCCCCGCGCGCACGCGCGC
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp GTGCGCGCGGGGACTCCGGGGGAGAGACCCTGGCGGTaGTCTGCGCGCGCTTGCCCGCCGTGGTCTCGGCTG +
Preference number: 6 (lower is better)
Translates to: VRAGTPGERPWR*SARACPPWSRL
Trigger: CAGCCGAGACCACGGCGGGCAAGCGCGCGCAGACCACCGCCAGGGTCTCTCCCCCGGAGTCCCCGCGCGCAC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp CCGGGGGAGAGACCCTGGCGGTGGTCTGCGCGCGCTTaGCCGCCGTGGTCTCGGCTGACACAGCGGCGGCAG +
Preference number: 6 (lower is better)
Translates to: PGERPWRWSARA*PPWSRLTQRRQ
Trigger: CTGCCGCCGCTGTGTCAGCCGAGACCACGGCGGGCAAGCGCGCGCAGACCACCGCCAGGGTCTCTCCCCCGG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp GTGTGCGGGAGCGCCACGTCGCTGTGGCGCCGCTCGTaGCTCGCTCGGGACACCCGGGCGTGCATGCGCATC +
Preference number: 6 (lower is better)
Translates to: VCGSATSLWRRS*LARDTRACMRI
Trigger: GATGCGCATGCACGCCCGGGTGTCCCGAGCGAGGCACGAGCGGCGCCACAGCGACGTGGCGCTCCCGCACAC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp GTGGTCTCGGCTGACACAGCGGCGGCAGCCTCGGTGTaGGGGAGCGCCACGTCGCTGTGGCGCCGCTCGTGC +
Preference number: 6 (lower is better)
Translates to: VVSADTAAAASV*GSATSLWRRSC
Trigger: GCACGAGCGGCGCCACAGCGACGTGGCGCTCCCGCACACCGAGGCTGCCGCCGCTGTGTCAGCCGAGACCAC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp GCCGCTCGTGCCTCGCTCGGGACACCCGGGCGTGCATaGGCATCTGCTGTTCCTCCAGCGGCGCCTTCACCG +
Preference number: 6 (lower is better)
Translates to: AARASLGTPGRA*ASAVPPAAPSP
Trigger: CGGTGAAGGCGCCGCTGGAGGAACAGCAGATGCGCATGCACGCCCGGGTGTCCCGAGCGAGGCACGAGCGGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp GCCTCCCCGCTTGGGCCGGTGTGGCTTGGGCGGGGATaGCCGCACCGACTCGGACTGATCGGAGCTCAGCGA +
Preference number: 6 (lower is better)
Translates to: ASPLGPVWLGRG*PHRLGLIGAQR
Trigger: TCGCTGAGCTCCGATCAGTCCGAGTCGGTGCGGCCATCCCCGCCCAAGCCACACCGGCCCAAGCGGGGAGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp GACGCCTCTTGCCTCCCCGCTTGGGCCGGTGTGGCTTaGGCGGGGATGGCCGCACCGACTCGGACTGATCGG +
Preference number: 6 (lower is better)
Translates to: DASCLPAWAGVA*AGMAAPTRTDR
Trigger: CCGATCAGTCCGAGTCGGTGCGGCCATCCCCGCCCAAGCCACACCGGCCCAAGCGGGGAGGCAAGAGGCGTC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp CCTCCTCGGAGCTGCTCACCGACATCTGACGCCTCTTaGCTCCCCGCTTGGGCCGGTGTGGCTTGGGCGGGG +
Preference number: 6 (lower is better)
Translates to: PPRSCSPTSDAS*LPAWAGVAWAG
Trigger: CCCCGCCCAAGCCACACCGGCCCAAGCGGGGAGGCAAGAGGCGTCAGATGTCGGTGAGCAGCTCCGAGGAGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp CATCTGACGCCTCTTGCCTCCCCGCTTGGGCCGGTGTaGCTTGGGCGGGGATGGCCGCACCGACTCGGACTG +
Preference number: 6 (lower is better)
Translates to: HLTPLASPLGPV*LGRGWPHRLGL
Trigger: CAGTCCGAGTCGGTGCGGCCATCCCCGCCCAAGCCACACCGGCCCAAGCGGGGAGGCAAGAGGCGTCAGATG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp TGCTCACCGACATCTGACGCCTCTTGCCTCCCCGCTTaGGCCGGTGTGGCTTGGGCGGGGATGGCCGCACCG +
Preference number: 6 (lower is better)
Translates to: CSPTSDASCLPA*AGVAWAGMAAP
Trigger: CGGTGCGGCCATCCCCGCCCAAGCCACACCGGCCCAAGCGGGGAGGCAAGAGGCGTCAGATGTCGGTGAGCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 90 bp GAGCTCAGCGAGTCGTTCCGCAGCATGCTTTCCGCTTTCTCGCGCTaGGCCTTGCGCAGGAGCACAGCCGAGCCGGGGTCCAGGCGGCCC +
Preference number: 6 (lower is better)
Translates to: ELSESFRSMLSAFSR*ALRRSTAEPGSRRP
Trigger: GGGCCGCCTGGACCCCGGCTCGGCTGTGCTCCTGCGCAAGGCCAAGCGCGAGAAAGCGGAAAGCATGCTGCGGAACGACTCGCTGAGCTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp TCCGCAGCATGCTTTCCGCTTTCTCGCGCTTGGCCTTaGGCAGGAGCACAGCCGAGCCGGGGTCCAGGCGGC +
Preference number: 6 (lower is better)
Translates to: SAACFPLSRAWP*AGAQPSRGPGG
Trigger: GCCGCCTGGACCCCGGCTCGGCTGTGCTCCTGCGCAAGGCCAAGCGCGAGAAAGCGGAAAGCATGCTGCGGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 72 bp CTCCTCCTCGGTCAGGTGGCTCAGGTCGGGCAGTTCTaGCATAGGGGGAGGCACCGTGGGTGGGCGAGGACC +
Preference number: 6 (lower is better)
Translates to: LLLGQVAQVGQF*HRGRHRGWART
Trigger: GGTCCTCGCCCACCCACGGTGCCTCCCCCTATGCAAGAACTGCCCGACCTGAGCCACCTGACCGAGGAGGAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 72 bp TTCCGCAGCATGCTTTCCGCTTTCTCGCGCTTGGCCTaGCGCAGGAGCACAGCCGAGCCGGGGTCCAGGCGG +
Preference number: 6 (lower is better)
Translates to: FRSMLSAFSRLA*RRSTAEPGSRR
Trigger: CCGCCTGGACCCCGGCTCGGCTGTGCTCCTGCGCAAGGCCAAGCGCGAGAAAGCGGAAAGCATGCTGCGGAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp TGTACTCCGGCGTGGACACGCCCTCCTCCTCGGAGCTaGTCACCGACATCTGACGCCTCTTGCCTCCCCGCT +
Preference number: 6 (lower is better)
Translates to: CTPAWTRPPPRS*SPTSDASCLPA
Trigger: AGCGGGGAGGCAAGAGGCGTCAGATGTCGGTGAGCAGCTCCGAGGAGGAGGGCGTGTCCACGCCGGAGTACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp CCTCCATCCCGATTTGGATATCGCCCATGGCTGGGGTaGCGAGGGTTTGGCGGCCGACAAGCTGGGCTGGCC +
Preference number: 6 (lower is better)
Translates to: PPSRFGYRPWLG*RGFGGRQAGLA
Trigger: GGCCAGCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCCAGCCATGGGCGATATCCAAATCGGGATGGAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS CAA 72 bp GAGTCGTTCCGCAGCATGCTTTCCGCTTTCTCGCGCTaGGCCTTGCGCAGGAGCACAGCCGAGCCGGGGTCC +
Preference number: 6 (lower is better)
Translates to: ESFRSMLSAFSR*ALRRSTAEPGS
Trigger: GGACCCCGGCTCGGCTGTGCTCCTGCGCAAGGCCAAGCGCGAGAAAGCGGAAAGCATGCTGCGGAACGACTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS TCA 72 bp TGTGGCTTGGGCGGGGATGGCCGCACCGACTCGGACTaGTCGGAGCTCAGCGAGTCGTTCCGCAGCATGCTT +
Preference number: 6 (lower is better)
Translates to: CGLGGDGRTDSD*SELSESFRSML
Trigger: AAGCATGCTGCGGAACGACTCGCTGAGCTCCGATCAGTCCGAGTCGGTGCGGCCATCCCCGCCCAAGCCACA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp GGACCGGCACCTGTGGGAGCTGTCTTCCGCGGCGACTaGCAAAGGATGTGTCAGCTGGAGGTGACTGGGTGG +
Preference number: 6 (lower is better)
Translates to: GPAPVGAVFRGD*QRMCQLEVTGW
Trigger: CCACCCAGTCACCTCCAGCTGACACATCCTTTGGCAGTCGCCGCGGAAGACAGCTCCCACAGGTGCCGGTCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp AGTCGTTCCGCAGCATGCTTTCCGCTTTCTCGCGCTTaGCCTTGCGCAGGAGCACAGCCGAGCCGGGGTCCA +
Preference number: 6 (lower is better)
Translates to: SRSAACFPLSRA*PCAGAQPSRGP
Trigger: TGGACCCCGGCTCGGCTGTGCTCCTGCGCAAGGCCAAGCGCGAGAAAGCGGAAAGCATGCTGCGGAACGACT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 72 bp GAGGTGACTGGGTGGGGCTTCCTTGTCGGTGCGTTCTaGTCAGAAGCGGAGAAGGCGGCGCTGACCCTCCGG +
Preference number: 6 (lower is better)
Translates to: EVTGWGFLVGAF*SEAEKAALTLR
Trigger: CCGGAGGGTCAGCGCCGCCTTCTCCGCTTCTGACAAGAACGCACCGACAAGGAAGCCCCACCCAGTCACCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 90 bp CCGCCTCTCCTTCCTCTCCCGTTCATCCGCGGTCCCTTCCCCGGGTaGCACCACAGACTTGGGGACACGTTTGCGCTCACTCTTCTGGCC +
Preference number: 6 (lower is better)
Translates to: PPLLPLPFIRGPFPG*HHRLGDTFALTLLA
Trigger: GGCCAGAAGAGTGAGCGCAAACGTGTCCCCAAGTCTGTGGTGCAACCCGGGGAAGGGACCGCGGATGAACGGGAGAGGAAGGAGAGGCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 90 bp TGTCAGCTGGAGGTGACTGGGTGGGGCTTCCTTGTCGGTGCGTTCTaGTCAGAAGCGGAGAAGGCGGCGCTGACCCTCCGGGGGCAAGGT +
Preference number: 6 (lower is better)
Translates to: CQLEVTGWGFLVGAF*SEAEKAALTLRGQG
Trigger: ACCTTGCCCCCGGAGGGTCAGCGCCGCCTTCTCCGCTTCTGACAAGAACGCACCGACAAGGAAGCCCCACCCAGTCACCTCCAGCTGACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp GGTCCGGGTAGTCCTGAGAGCGCCCTTTCTCCAGCCTaGGGGTTTCCCGCCTCTCCTTCCTCTCCCGTTCAT +
Preference number: 6 (lower is better)
Translates to: GPGSPESALSPA*GFPASPSSPVH
Trigger: ATGAACGGGAGAGGAAGGAGAGGCGGGAAACCCGCAGGCTGGAGAAAGGGCGCTCTCAGGACTACCCGGACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 72 bp TCATCCGCGGTCCCTTCCCCGGGTTGCACCACAGACTaGGGGACACGTTTGCGCTCACTCTTCTGGCCTCCC +
Preference number: 6 (lower is better)
Translates to: SSAVPSPGCTTD*GTRLRSLFWPP
Trigger: GGGAGGCCAGAAGAGTGAGCGCAAACGTGTCCCCAAGTCTGTGGTGCAACCCGGGGAAGGGACCGCGGATGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 72 bp GATTTGGATATCGCCCATGGCTGGGGTGGCGAGGGTTaGGCGGCCGACAAGCTGGGCTGGCCCCAATCCATC +
Preference number: 6 (lower is better)
Translates to: DLDIAHGWGGEG*AADKLGWPQSI
Trigger: GATGGATTGGGGCCAGCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCCAGCCATGGGCGATATCCAAATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS TCA 72 bp TCCGCGGCGACTGCCAAAGGATGTGTCAGCTGGAGGTaGCTGGGTGGGGCTTCCTTGTCGGTGCGTTCTGTC +
Preference number: 6 (lower is better)
Translates to: SAATAKGCVSWR*LGGASLSVRSV
Trigger: GACAGAACGCACCGACAAGGAAGCCCCACCCAGTCACCTCCAGCTGACACATCCTTTGGCAGTCGCCGCGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081544.14
CDS GCA 72 bp CGGACTGATCGGAGCTCAGCGAGTCGTTCCGCAGCATaGTTTCCGCTTTCTCGCGCTTGGCCTTGCGCAGGA +
Preference number: 6 (lower is better)
Translates to: RTDRSSASRSAA*FPLSRAWPCAG
Trigger: TCCTGCGCAAGGCCAAGCGCGAGAAAGCGGAAAGCATGCTGCGGAACGACTCGCTGAGCTCCGATCAGTCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp TCAGCTGGAGGTGACTGGGTGGGGCTTCCTTGTCGGTaGGTTCTTGTCAGAAGCGGAGAAGGCGGCGCTGAC +
Preference number: 6 (lower is better)
Translates to: SAGGDWVGLPCR*VLVRSGEGGAD
Trigger: GTCAGCGCCGCCTTCTCCGCTTCTGACAAGAACGCACCGACAAGGAAGCCCCACCCAGTCACCTCCAGCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp CGGCGACTGCCAAAGGATGTGTCAGCTGGAGGTGACTaGGTGGGGCTTCCTTGTCGGTGCGTTCTGTCTGGC +
Preference number: 6 (lower is better)
Translates to: RRLPKDVSAGGD*VGLPCRCVLSG
Trigger: GCCAGACAGAACGCACCGACAAGGAAGCCCCACCCAGTCACCTCCAGCTGACACATCCTTTGGCAGTCGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081544.14
CDS CCA 72 bp ATTTGGATATCGCCCATGGCTGGGGTGGCGAGGGTTTaGCGGCCGACAAGCTGGGCTGGCCCCAATCCATCA +
Preference number: 6 (lower is better)
Translates to: IWISPMAGVARV*RPTSWAGPNPS
Trigger: TGATGGATTGGGGCCAGCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCCAGCCATGGGCGATATCCAAAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS CCA 72 bp CTTATCCTCCATCCCGATTTGGATATCGCCCATGGCTaGGGTGGCGAGGGTTTGGCGGCCGACAAGCTGGGC +
Preference number: 6 (lower is better)
Translates to: LILHPDLDIAHG*GGEGLAADKLG
Trigger: GCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCCAGCCATGGGCGATATCCAAATCGGGATGGAGGATAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS CAA 72 bp CTTCCTCTCCCGTTCATCCGCGGTCCCTTCCCCGGGTaGCACCACAGACTTGGGGACACGTTTGCGCTCACT +
Preference number: 6 (lower is better)
Translates to: LPLPFIRGPFPG*HHRLGDTFALT
Trigger: AGTGAGCGCAAACGTGTCCCCAAGTCTGTGGTGCAACCCGGGGAAGGGACCGCGGATGAACGGGAGAGGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 90 bp TCCGCGGTCCCTTCCCCGGGTTGCACCACAGACTTGGGGACACGTTaGCGCTCACTCTTCTGGCCTCCCTTGCCATTCTGCTCTGAAAGC +
Preference number: 6 (lower is better)
Translates to: SAVPSPGCTTDLGTR*RSLFWPPLPFCSES
Trigger: GCTTTCAGAGCAGAATGGCAAGGGAGGCCAGAAGAGTGAGCGCAAACGTGTCCCCAAGTCTGTGGTGCAACCCGGGGAAGGGACCGCGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 90 bp CTCCATCCCGATTTGGATATCGCCCATGGCTGGGGTGGCGAGGGTTaGGCGGCCGACAAGCTGGGCTGGCCCCAATCCATCAAGGAAATC +
Preference number: 6 (lower is better)
Translates to: LHPDLDIAHGWGGEG*AADKLGWPQSIKEI
Trigger: GATTTCCTTGATGGATTGGGGCCAGCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCCAGCCATGGGCGATATCCAAATCGGGATGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS TCA 72 bp TCCGCGGCGACTGCCAAAGGATGTGTCAGCTGGAGGTaGCTGGGTGGGGCTTCCTTGTCGGTGCGTTCTTGT +
Preference number: 6 (lower is better)
Translates to: SAATAKGCVSWR*LGGASLSVRSC
Trigger: ACAAGAACGCACCGACAAGGAAGCCCCACCCAGTCACCTCCAGCTGACACATCCTTTGGCAGTCGCCGCGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp CCTCCTCCTTCCTCTGCTTTTCGTCTTCAGCCACCCTaGCATCCTCGCGTTTCTCGAGCCGGTCCGGGTAGT +
Preference number: 6 (lower is better)
Translates to: PPPSSAFRLQPP*HPRVSRAGPGS
Trigger: ACTACCCGGACCGGCTCGAGAAACGCGAGGATGGCAGGGTGGCTGAAGACGAAAAGCAGAGGAAGGAGGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp GGAGAAGGCGGCGCTGACCCTCCGGGGGCAAGGTGGTaGATAGAACACAGGGTTCTGATACTAGAGTGCTCG +
Preference number: 6 (lower is better)
Translates to: GEGGADPPGARW*IEHRVLILECS
Trigger: CGAGCACTCTAGTATCAGAACCCTGTGTTCTATGCACCACCTTGCCCCCGGAGGGTCAGCGCCGCCTTCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp CGCTTGTTCTATACTGCCGCTTCGGACCGGCACCTGTaGGAGCTGTCTTCCGCGGCGACTGCCAAAGGATGT +
Preference number: 6 (lower is better)
Translates to: RLFYTAASDRHL*ELSSAATAKGC
Trigger: ACATCCTTTGGCAGTCGCCGCGGAAGACAGCTCCCACAGGTGCCGGTCCGAAGCGGCAGTATAGAACAAGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp AGCGGAGAAGGCGGCGCTGACCCTCCGGGGGCAAGGTaGTGCATAGAACACAGGGTTCTGATACTAGAGTGC +
Preference number: 6 (lower is better)
Translates to: SGEGGADPPGAR*CIEHRVLILEC
Trigger: GCACTCTAGTATCAGAACCCTGTGTTCTATGCACCACCTTGCCCCCGGAGGGTCAGCGCCGCCTTCTCCGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp ACATGTTCCCGCCTCAGAATCGACAGACCTCAGCTCTaGCCAGCCTTCTGCGGAGACGGGAAGCCCAGATGT +
Preference number: 6 (lower is better)
Translates to: TCSRLRIDRPQL*PAFCGDGKPRC
Trigger: ACATCTGGGCTTCCCGTCTCCGCAGAAGGCTGGGCAGAGCTGAGGTCTGTCGATTCTGAGGCGGGAACATGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239255.2
CDS CCA 72 bp GACTGCCAAAGGATGTGTCAGCTGGAGGTGACTGGGTaGGGCTTCCTTGTCGGTGCGTTCTGTCTGGCTCTG +
Preference number: 6 (lower is better)
Translates to: DCQRMCQLEVTG*GFLVGAFCLAL
Trigger: CAGAGCCAGACAGAACGCACCGACAAGGAAGCCCCACCCAGTCACCTCCAGCTGACACATCCTTTGGCAGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081544.14
CDS CCA 72 bp CCTTCTTATCCTCCATCCCGATTTGGATATCGCCCATaGCTGGGGTGGCGAGGGTTTGGCGGCCGACAAGCT +
Preference number: 6 (lower is better)
Translates to: PSYPPSRFGYRP*LGWRGFGGRQA
Trigger: AGCTTGTCGGCCGCCAAACCCTCGCCACCCCAGCCATGGGCGATATCCAAATCGGGATGGAGGATAAGAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS CCA 72 bp CGGCGACTGCCAAAGGATGTGTCAGCTGGAGGTGACTaGGTGGGGCTTCCTTGTCGGTGCGTTCTTGTCAGA +
Preference number: 6 (lower is better)
Translates to: RRLPKDVSAGGD*VGLPCRCVLVR
Trigger: TCTGACAAGAACGCACCGACAAGGAAGCCCCACCCAGTCACCTCCAGCTGACACATCCTTTGGCAGTCGCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 90 bp CACCTCAGATCCAGCACCTGTAGCCGTGTCACTCAGAGTCCCATCTaGACTGGGCTGCTGAGGACCACTTCCGAAGAACCACGCTCCAGA +
Preference number: 6 (lower is better)
Translates to: HLRSSTCSRVTQSPI*TGLLRTTSEEPRSR
Trigger: TCTGGAGCGTGGTTCTTCGGAAGTGGTCCTCAGCAGCCCAGTCAAGATGGGACTCTGAGTGACACGGCTACAGGTGCTGGATCTGAGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 90 bp GATAACCTCAACCTCCAACTGACCCTTCTTATCCTCCATCCCGATTaGGATATCGCCCATGGCTGGGGTGGCGAGGGTTTGGCGGCCGAC +
Preference number: 6 (lower is better)
Translates to: DNLNLQLTLLILHPD*DIAHGWGGEGLAAD
Trigger: GTCGGCCGCCAAACCCTCGCCACCCCAGCCATGGGCGATATCCAAATCGGGATGGAGGATAAGAAGGGTCAGTTGGAGGTTGAGGTTATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS TCA 72 bp TCCCTGATCATCGCCGCGATGAGGAGACACGGAACGTaGGCGGTGATGTGTGGTTCTTTGCTGCTCTGGCAC +
Preference number: 6 (lower is better)
Translates to: SLIIAAMRRHGT*AVMCGSLLLWH
Trigger: GTGCCAGAGCAGCAAAGAACCACACATCACCGCTCACGTTCCGTGTCTCCTCATCGCGGCGATGATCAGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS TCA 72 bp GAGTGCCTGTCATTCTCCGGAGACGCATGCTGGATTTaGATCCTGGGGCTAGCAGGTCGCCTCCTAGCTAGG +
Preference number: 6 (lower is better)
Translates to: ECLSFSGDACWI*ILGLAGRLLAR
Trigger: CCTAGCTAGGAGGCGACCTGCTAGCCCCAGGATTCAAATCCAGCATGCGTCTCCGGAGAATGACAGGCACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
CDS GCA 72 bp CAGCTCCAACGGTACCCACGGCCGTGTCGGACTGGCTaGCGTCATTGTGCTCCAGTGTATATATCTCTCCAC +
Preference number: 6 (lower is better)
Translates to: QLQRYPRPCRTG*RHCAPVYISLH
Trigger: GTGGAGAGATATATACACTGGAGCACAATGACGGCAGCCAGTCCGACACGGCCGTGGGTACCGTTGGAGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp CCACCAGCTCCAACGGTACCCACGGCCGTGTCGGACTaGCTGCCGTCATTGTGCTCCAGTGTATATATCTCT +
Preference number: 6 (lower is better)
Translates to: PPAPTVPTAVSD*LPSLCSSVYIS
Trigger: AGAGATATATACACTGGAGCACAATGACGGCAGCCAGTCCGACACGGCCGTGGGTACCGTTGGAGCTGGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp GACTGCCAAAGGATGTGTCAGCTGGAGGTGACTGGGTaGGGCTTCCTTGTCGGTGCGTTCTTGTCAGAAGCG +
Preference number: 6 (lower is better)
Translates to: DCQRMCQLEVTG*GFLVGAFLSEA
Trigger: CGCTTCTGACAAGAACGCACCGACAAGGAAGCCCCACCCAGTCACCTCCAGCTGACACATCCTTTGGCAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 90 bp CCACGTGGCAGGATCCAACCAGTAGTCCAAGTCACCAGCACATGCTaGGCGAGTCTCACATGTTCCCGCCTCAGAATCGACAGACCTCAG +
Preference number: 6 (lower is better)
Translates to: PRGRIQPVVQVTSTC*ASLTCSRLRIDRPQ
Trigger: CTGAGGTCTGTCGATTCTGAGGCGGGAACATGTGAGACTCGCCAAGCATGTGCTGGTGACTTGGACTACTGGTTGGATCCTGCCACGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239255.2
CDS GCA 72 bp CTCAGAATCGACAGACCTCAGCTCTGCCCAGCCTTCTaGGGAGACGGGAAGCCCAGATGTACACATCACAGA +
Preference number: 6 (lower is better)
Translates to: LRIDRPQLCPAF*GDGKPRCTHHR
Trigger: TCTGTGATGTGTACATCTGGGCTTCCCGTCTCCGCAGAAGGCTGGGCAGAGCTGAGGTCTGTCGATTCTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239255.2
CDS CCA 72 bp ACCACAGACTTGGGGACACGTTTGCGCTCACTCTTCTaGCCTCCCTTGCCATTCTGCTCTGAAAGCCCTGGA +
Preference number: 6 (lower is better)
Translates to: TTDLGTRLRSLF*PPLPFCSESPG
Trigger: TCCAGGGCTTTCAGAGCAGAATGGCAAGGGAGGCCAGAAGAGTGAGCGCAAACGTGTCCCCAAGTCTGTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp CGCGATGAGGAGACACGGAACGTGAGCGGTGATGTGTaGTTCTTTGCTGCTCTGGCACTGTTAACGTGGTGG +
Preference number: 6 (lower is better)
Translates to: RDEETRNVSGDV*FFAALALLTWW
Trigger: CCACCACGTTAACAGTGCCAGAGCAGCAAAGAACCACACATCACCGCTCACGTTCCGTGTCTCCTCATCGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 72 bp TCCAGCACCTGTAGCCGTGTCACTCAGAGTCCCATCTaGACTGGGCTGCTGAGGACCACTTCCGAAGAACCA +
Preference number: 6 (lower is better)
Translates to: SSTCSRVTQSPI*TGLLRTTSEEP
Trigger: TGGTTCTTCGGAAGTGGTCCTCAGCAGCCCAGTCAAGATGGGACTCTGAGTGACACGGCTACAGGTGCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 72 bp GTTCCTGTCCAGTGGTGCACCATGGGAAGCAGTGTCTaGGGAAGAGACAGCTGCTGTACTCAAGGGCGTCTG +
Preference number: 6 (lower is better)
Translates to: VPVQWCTMGSSV*GRDSCCTQGRL
Trigger: CAGACGCCCTTGAGTACAGCAGCTGTCTCTTCCCAAGACACTGCTTCCCATGGTGCACCACTGGACAGGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 72 bp TTGGGGACACGTTTGCGCTCACTCTTCTGGCCTCCCTaGCCATTCTGCTCTGAAAGCCCTGGAGCCTTCTTC +
Preference number: 6 (lower is better)
Translates to: LGTRLRSLFWPP*PFCSESPGAFF
Trigger: GAAGAAGGCTCCAGGGCTTTCAGAGCAGAATGGCAAGGGAGGCCAGAAGAGTGAGCGCAAACGTGTCCCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 90 bp CTCGCTCGACCGGGAGCGAGTGGTATGCTTTCCCCTAATGACCGGTaGATCGGTTGCTCTTGGGATTGCGTATCCCCTTCTAGAAAGGCA +
Preference number: 6 (lower is better)
Translates to: LARPGASGMLSPNDR*IGCSWDCVSPSRKA
Trigger: TGCCTTTCTAGAAGGGGATACGCAATCCCAAGAGCAACCGATCAACCGGTCATTAGGGGAAAGCATACCACTCGCTCCCGGTCGAGCGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS TCA 72 bp TGCTGGAGCTTTCTCCGTGGATATGCCGCCTGGGCATaGACGGTGATGGCTGAGGCAGAGGTAGTGAAGATT +
Preference number: 6 (lower is better)
Translates to: CWSFLRGYAAWA*TVMAEAEVVKI
Trigger: AATCTTCACTACCTCTGCCTCAGCCATCACCGTTCATGCCCAGGCGGCATATCCACGGAGAAAGCTCCAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp CTTTCCCTTGGTGGCTCACTTCTTGACCTTGATGCCTaGTTCTGTTCAGGACCCAAGGCTTGCTGTGAGGGC +
Preference number: 6 (lower is better)
Translates to: LSLGGSLLDLDA*FCSGPKACCEG
Trigger: GCCCTCACAGCAAGCCTTGGGTCCTGAACAGAAGCAGGCATCAAGGTCAAGAAGTGAGCCACCAAGGGAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp TTCGTTCCTCCACTACTAAGCTCGCTTGTTCTATACTaGCGCTTCGGACCGGCACCTGTGGGAGCTGTCTTC +
Preference number: 6 (lower is better)
Translates to: FVPPLLSSLVLY*RFGPAPVGAVF
Trigger: GAAGACAGCTCCCACAGGTGCCGGTCCGAAGCGGCAGTATAGAACAAGCGAGCTTAGTAGTGGAGGAACGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp TTCGAGACACAATGGCTACCACTTTGGCACTCAGGCTaGACCTCCGCTTCTTTCCACCAGCTCCAACGGTAC +
Preference number: 6 (lower is better)
Translates to: FETQWLPLWHSG*TSASFHQLQRY
Trigger: GTACCGTTGGAGCTGGTGGAAAGAAGCGGAGGTCCAGCCTGAGTGCCAAAGTGGTAGCCATTGTGTCTCGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 72 bp GATCGGCCAGGCTTCGGGAGGCATCATGGTGTCGGGTaGGAGAACGTGACCTTCGTGTTGGATGGATTTCAT +
Preference number: 6 (lower is better)
Translates to: DRPGFGRHHGVG*ENVTFVLDGFH
Trigger: ATGAAATCCATCCAACACGAAGGTCACGTTCTCCAACCCGACACCATGATGCCTCCCGAAGCCTGGCCGATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 72 bp CCGGGAGCGAGTGGTATGCTTTCCCCTAATGACCGGTaGATCGGTTGCTCTTGGGATTGCGTATCCCCTTCT +
Preference number: 6 (lower is better)
Translates to: PGASGMLSPNDR*IGCSWDCVSPS
Trigger: AGAAGGGGATACGCAATCCCAAGAGCAACCGATCAACCGGTCATTAGGGGAAAGCATACCACTCGCTCCCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 90 bp GTGATCTGTGATCGGCCAGGCTTCGGGAGGCATCATGGTGTCGGGTaGGAGAACGTGACCTTCGTGTTGGATGGATTTCATCTAAGCTCC +
Preference number: 6 (lower is better)
Translates to: VICDRPGFGRHHGVG*ENVTFVLDGFHLSS
Trigger: GGAGCTTAGATGAAATCCATCCAACACGAAGGTCACGTTCTCCAACCCGACACCATGATGCCTCCCGAAGCCTGGCCGATCACAGATCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 90 bp AGCTGTGATGTGCTTCTGCTTCTTCGAGACACAATGGCTACCACTTaGGCACTCAGGCTGGACCTCCGCTTCTTTCCACCAGCTCCAACG +
Preference number: 6 (lower is better)
Translates to: SCDVLLLLRDTMATT*ALRLDLRFFPPAPT
Trigger: CGTTGGAGCTGGTGGAAAGAAGCGGAGGTCCAGCCTGAGTGCCAAAGTGGTAGCCATTGTGTCTCGAAGAAGCAGAAGCACATCACAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS TCA 72 bp CGGGAGCGAGTGGTATGCTTTCCCCTAATGACCGGTTaGTCGGTTGCTCTTGGGATTGCGTATCCCCTTCTA +
Preference number: 6 (lower is better)
Translates to: RERVVCFPLMTG*SVALGIAYPLL
Trigger: TAGAAGGGGATACGCAATCCCAAGAGCAACCGATCAACCGGTCATTAGGGGAAAGCATACCACTCGCTCCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp ATTGTTCGATCGCAGAGACACTCGGCCTCCACAGCGTaGACAGAACTTGGTGCGACAATAGGAGCAGAGATG +
Preference number: 6 (lower is better)
Translates to: IVRSQRHSASTA*TELGATIGAEM
Trigger: CATCTCTGCTCCTATTGTCGCACCAAGTTCTGTGCACGCTGTGGAGGCCGAGTGTCTCTGCGATCGAACAAT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp CAGCCGCCATTCCCGTTTCCGTACTCCTCTGAATGGTaGTTTTTAACTTCTTGTGGCCGGACTCTGTCTGGC +
Preference number: 6 (lower is better)
Translates to: QPPFPFPYSSEW*FLTSCGRTLSG
Trigger: GCCAGACAGAGTCCGGCCACAAGAAGTTAAAAAGCACCATTCAGAGGAGTACGGAAACGGGAATGGCGGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp TGCTTCTGCTTCTTCGAGACACAATGGCTACCACTTTaGCACTCAGGCTGGACCTCCGCTTCTTTCCACCAG +
Preference number: 6 (lower is better)
Translates to: CFCFFETQWLPL*HSGWTSASFHQ
Trigger: CTGGTGGAAAGAAGCGGAGGTCCAGCCTGAGTGCCAAAGTGGTAGCCATTGTGTCTCGAAGAAGCAGAAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 72 bp CTGGAGCCTTCTTCCTTTCCCTTGGTGGCTCACTTCTaGACCTTGATGCCTGCTTCTGTTCAGGACCCAAGG +
Preference number: 6 (lower is better)
Translates to: LEPSSFPLVAHF*TLMPASVQDPR
Trigger: CCTTGGGTCCTGAACAGAAGCAGGCATCAAGGTCAAGAAGTGAGCCACCAAGGGAAAGGAAGAAGGCTCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 72 bp GTGCTTCTGCTTCTTCGAGACACAATGGCTACCACTTaGGCACTCAGGCTGGACCTCCGCTTCTTTCCACCA +
Preference number: 6 (lower is better)
Translates to: VLLLLRDTMATT*ALRLDLRFFPP
Trigger: TGGTGGAAAGAAGCGGAGGTCCAGCCTGAGTGCCAAAGTGGTAGCCATTGTGTCTCGAAGAAGCAGAAGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 90 bp TGTCTTGGGAAGAGACAGCTGCTGTACTCAAGGGCGTCTGAGACCTaGATCGCTCTTGGAGCCGAGCTTTCTTTTCTCTTGGCACCTCAG +
Preference number: 6 (lower is better)
Translates to: CLGKRQLLYSRASET*IALGAELSFLLAPQ
Trigger: CTGAGGTGCCAAGAGAAAAGAAAGCTCGGCTCCAAGAGCGATCAAGGTCTCAGACGCCCTTGAGTACAGCAGCTGTCTCTTCCCAAGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS TCA 72 bp AGAGACAGCTGCTGTACTCAAGGGCGTCTGAGACCTTaGTCGCTCTTGGAGCCGAGCTTTCTTTTCTCTTGG +
Preference number: 6 (lower is better)
Translates to: RDSCCTQGRLRP*SLLEPSFLFSW
Trigger: CCAAGAGAAAAGAAAGCTCGGCTCCAAGAGCGATCAAGGTCTCAGACGCCCTTGAGTACAGCAGCTGTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS TCA 72 bp TCTTGGGAAGAGACAGCTGCTGTACTCAAGGGCGTCTaGGACCTTGATCGCTCTTGGAGCCGAGCTTTCTTT +
Preference number: 6 (lower is better)
Translates to: SWEETAAVLKGV*DLDRSWSRAFF
Trigger: AAAGAAAGCTCGGCTCCAAGAGCGATCAAGGTCTCAGACGCCCTTGAGTACAGCAGCTGTCTCTTCCCAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS TCA 72 bp AGGTGCTGCTGGCTCTGGAAATGGCGGACACATCACTaGCATCACTATCTGATGACTTGGCGGACGCGTTAT +
Preference number: 6 (lower is better)
Translates to: RCCWLWKWRTHH*HHYLMTWRTRY
Trigger: ATAACGCGTCCGCCAAGTCATCAGATAGTGATGTCAGTGATGTGTCCGCCATTTCCAGAGCCAGCAGCACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp TCCCCTAATGACCGGTTGATCGGTTGCTCTTGGGATTaGGTATCCCCTTCTAGAAAGGCATGGTGGGAGAAC +
Preference number: 6 (lower is better)
Translates to: SPNDRLIGCSWD*VSPSRKAWWEN
Trigger: GTTCTCCCACCATGCCTTTCTAGAAGGGGATACGCAATCCCAAGAGCAACCGATCAACCGGTCATTAGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp GGTCAGGGGAGTGAGTGTGGGATCCACCAGGGAGGATaGAGGGAACAATTTATACCATCCAATCACCATGCT +
Preference number: 6 (lower is better)
Translates to: GQGSECGIHQGG*REQFIPSNHHA
Trigger: AGCATGGTGATTGGATGGTATAAATTGTTCCCTCCATCCTCCCTGGTGGATCCCACACTCACTCCCCTGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS TCA 72 bp CGCATTTCAGCCGCCATTCCCGTTTCCGTACTCCTCTaGATGGTGCTTTTTAACTTCTTGTGGCCGGACTCT +
Preference number: 6 (lower is better)
Translates to: RISAAIPVSVLL*MVLFNFLWPDS
Trigger: AGAGTCCGGCCACAAGAAGTTAAAAAGCACCATTCAGAGGAGTACGGAAACGGGAATGGCGGCTGAAATGCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp TTGGTACTAGCACTCCTAGCCCTGTCAAGAGAGGGCTaGAGTTCACTGGTCATGTGTAGGCATTCTGCACTT +
Preference number: 6 (lower is better)
Translates to: LVLALLALSREG*SSLVMCRHSAL
Trigger: AAGTGCAGAATGCCTACACATGACCAGTGAACTGCAGCCCTCTCTTGACAGGGCTAGGAGTGCTAGTACCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097808.9
ENSMUST00000115273.10
CDS CCA 72 bp ATGCTTTCCCCTAATGACCGGTTGATCGGTTGCTCTTaGGATTGCGTATCCCCTTCTAGAAAGGCATGGTGG +
Preference number: 6 (lower is better)
Translates to: MLSPNDRLIGCS*DCVSPSRKAWW
Trigger: CCACCATGCCTTTCTAGAAGGGGATACGCAATCCCAAGAGCAACCGATCAACCGGTCATTAGGGGAAAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 72 bp AAGAGACAGCTGCTGTACTCAAGGGCGTCTGAGACCTaGATCGCTCTTGGAGCCGAGCTTTCTTTTCTCTTG +
Preference number: 6 (lower is better)
Translates to: KRQLLYSRASET*IALGAELSFLL
Trigger: CAAGAGAAAAGAAAGCTCGGCTCCAAGAGCGATCAAGGTCTCAGACGCCCTTGAGTACAGCAGCTGTCTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 72 bp TGTCCGACAACATCTGCCAGGCTACCCTTCTTTACTTaGGTGATGAAAGCACCAAGACGCCCTAAGTCCGTC +
Preference number: 6 (lower is better)
Translates to: CPTTSARLPFFT*VMKAPRRPKSV
Trigger: GACGGACTTAGGGCGTCTTGGTGCTTTCATCACCAAAGTAAAGAAGGGTAGCCTGGCAGATGTTGTCGGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000239255.2
CDS TCA 72 bp ATTCTGCACTTCGTCCTCGTTTTGCTCTGGGCAGCATaGGAAGCTCACTGTCTGGCTCTGATGAATACTGAC +
Preference number: 6 (lower is better)
Translates to: ILHFVLVLLWAA*EAHCLALMNTD
Trigger: GTCAGTATTCATCAGAGCCAGACAGTGAGCTTCTCATGCTGCCCAGAGCAAAACGAGGACGAAGTGCAGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp AGTGGTATGCTTTCCCCTAATGACCGGTTGATCGGTTaGTCTTGGGATTGCGTATCCCCTTCTAGAAAGGCA +
Preference number: 6 (lower is better)
Translates to: SGMLSPNDRLIG*SWDCVSPSRKA
Trigger: TGCCTTTCTAGAAGGGGATACGCAATCCCAAGAGCAACCGATCAACCGGTCATTAGGGGAAAGCATACCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 72 bp TCTGGTGAATGCAAACTAGTATCTGGTCTCAAGCAGTaGGTACTAGCACTCCTAGCCCTGTCAAGAGAGGGC +
Preference number: 6 (lower is better)
Translates to: SGECKLVSGLKQ*VLALLALSREG
Trigger: GCCCTCTCTTGACAGGGCTAGGAGTGCTAGTACCAACTGCTTGAGACCAGATACTAGTTTGCATTCACCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 90 bp GCTCTTAGGTGTCCGACAACATCTGCCAGGCTACCCTTCTTTACTTaGGTGATGAAAGCACCAAGACGCCCTAAGTCCGTCATTTTTCCT +
Preference number: 6 (lower is better)
Translates to: ALRCPTTSARLPFFT*VMKAPRRPKSVIFP
Trigger: AGGAAAAATGACGGACTTAGGGCGTCTTGGTGCTTTCATCACCAAAGTAAAGAAGGGTAGCCTGGCAGATGTTGTCGGACACCTAAGAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000239255.2
CDS CAA 90 bp TTCGGGAGGCATCATGGTGTCGGGTTGGAGAACGTGACCTTCGTGTaGGATGGATTTCATCTAAGCTCCTCTGTAATGGCACATTTGGTA +
Preference number: 6 (lower is better)
Translates to: FGRHHGVGLENVTFV*DGFHLSSSVMAHLV
Trigger: TACCAAATGTGCCATTACAGAGGAGCTTAGATGAAATCCATCCAACACGAAGGTCACGTTCTCCAACCCGACACCATGATGCCTCCCGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 90 bp CTTTCTCGTTCTGGTGAATGCAAACTAGTATCTGGTCTCAAGCAGTaGGTACTAGCACTCCTAGCCCTGTCAAGAGAGGGCTGCAGTTCA +
Preference number: 6 (lower is better)
Translates to: LSRSGECKLVSGLKQ*VLALLALSREGCSS
Trigger: TGAACTGCAGCCCTCTCTTGACAGGGCTAGGAGTGCTAGTACCAACTGCTTGAGACCAGATACTAGTTTGCATTCACCAGAACGAGAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp GAGGGGGACCATCTACCCCTTTCTCGTTCTGGTGAATaGAAACTAGTATCTGGTCTCAAGCAGTTGGTACTA +
Preference number: 6 (lower is better)
Translates to: EGDHLPLSRSGE*KLVSGLKQLVL
Trigger: TAGTACCAACTGCTTGAGACCAGATACTAGTTTGCATTCACCAGAACGAGAAAGGGGTAGATGGTCCCCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
CDS CAA 72 bp CATAAATTGCATACCCACATAACCACTTTGTCCTCATaGTTCGATCGCAGAGACACTCGGCCTCCACAGCGT +
Preference number: 6 (lower is better)
Translates to: HKLHTHITTLSS*FDRRDTRPPQR
Trigger: ACGCTGTGGAGGCCGAGTGTCTCTGCGATCGAACAATGAGGACAAAGTGGTTATGTGGGTATGCAATTTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 72 bp CATCATGGTGTCGGGTTGGAGAACGTGACCTTCGTGTaGGATGGATTTCATCTAAGCTCCTCTGTAATGGCA +
Preference number: 6 (lower is better)
Translates to: HHGVGLENVTFV*DGFHLSSSVMA
Trigger: TGCCATTACAGAGGAGCTTAGATGAAATCCATCCAACACGAAGGTCACGTTCTCCAACCCGACACCATGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 90 bp GTGCTCGCCCTGGTAACGCCTGGCTTCCTCTCCGATTTTTCTCACTaGTTCCTTGTAGCTTTCAAACTGTTGATGCAATCTCCAGTTTCT +
Preference number: 6 (lower is better)
Translates to: VLALVTPGFLSDFSH*FLVAFKLLMQSPVS
Trigger: AGAAACTGGAGATTGCATCAACAGTTTGAAAGCTACAAGGAACAAGTGAGAAAAATCGGAGAGGAAGCCAGGCGTTACCAGGGCGAGCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 90 bp GAGAACCCTGTCTGCATCAGAGGCTGTGCCTTTCCTAGACTGTTTTaGGATGCTAGATCTTTCAGACTTTCTGGAGTGCCTGTCATTCTC +
Preference number: 6 (lower is better)
Translates to: ENPVCIRGCAFPRLF*DARSFRLSGVPVIL
Trigger: GAGAATGACAGGCACTCCAGAAAGTCTGAAAGATCTAGCATCCAAAAACAGTCTAGGAAAGGCACAGCCTCTGATGCAGACAGGGTTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
CDS CAA 90 bp GAGAACCCTGTCTGCATCAGAGGCTGTGCCTTTCCTAGACTGTTTTaGGATGCTAGATCTTTCAGACTTTCTGGAGTGCCTTTCTCGTTC +
Preference number: 6 (lower is better)
Translates to: ENPVCIRGCAFPRLF*DARSFRLSGVPFSF
Trigger: GAACGAGAAAGGCACTCCAGAAAGTCTGAAAGATCTAGCATCCAAAAACAGTCTAGGAAAGGCACAGCCTCTGATGCAGACAGGGTTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115273.10
CDS CCA 72 bp TGGTGTCGGGTTGGAGAACGTGACCTTCGTGTTGGATaGATTTCATCTAAGCTCCTCTGTAATGGCACATTT +
Preference number: 6 (lower is better)
Translates to: WCRVGERDLRVG*ISSKLLCNGTF
Trigger: AAATGTGCCATTACAGAGGAGCTTAGATGAAATCCATCCAACACGAAGGTCACGTTCTCCAACCCGACACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 72 bp GATGGATTTCATCTAAGCTCCTCTGTAATGGCACATTaGGTAAACGTGAACGAGGCCTTCCCTGATCATCGC +
Preference number: 6 (lower is better)
Translates to: DGFHLSSSVMAH*VNVNEAFPDHR
Trigger: GCGATGATCAGGGAAGGCCTCGTTCACGTTTACCAAATGTGCCATTACAGAGGAGCTTAGATGAAATCCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 72 bp GTCTGCATCAGAGGCTGTGCCTTTCCTAGACTGTTTTaGGATGCTAGATCTTTCAGACTTTCTGGAGTGCCT +
Preference number: 6 (lower is better)
Translates to: VCIRGCAFPRLF*DARSFRLSGVP
Trigger: AGGCACTCCAGAAAGTCTGAAAGATCTAGCATCCAAAAACAGTCTAGGAAAGGCACAGCCTCTGATGCAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS TCA 72 bp ATGTTGTACTTGGAGTATTGCTCGTGGTCAAGTTCTTaGCTAGACCCAGACCCTGTTGTCTGCTTAAATCGG +
Preference number: 6 (lower is better)
Translates to: MLYLEYCSWSSS*LDPDPVVCLNR
Trigger: CCGATTTAAGCAGACAACAGGGTCTGGGTCTAGTCAAGAACTTGACCACGAGCAATACTCCAAGTACAACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp GGTAGATCTGTTGCTTGTAGAACATTTACAATCAGCTaGTGCCCCACCTTATCATACCACAGCTTCACTGAG +
Preference number: 6 (lower is better)
Translates to: GRSVACRTFTIS*CPTLSYHSFTE
Trigger: CTCAGTGAAGCTGTGGTATGATAAGGTGGGGCACCAGCTGATTGTAAATGTTCTACAAGCAACAGATCTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CCA 72 bp GTCACCCCAGACAATCACCTGAAGAACTTTACCCTGTaGACTTTCATCAAAAACCAGGGACTGCTGATACAA +
Preference number: 6 (lower is better)
Translates to: VTPDNHLKNFTL*TFIKNQGLLIQ
Trigger: TTGTATCAGCAGTCCCTGGTTTTTGATGAAAGTCCACAGGGTAAAGTTCTTCAGGTGATTGTCTGGGGTGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS TCA 72 bp GATGACTTGGCGGACGCGTTATCACAGCTTCTGTACTaGTCTTTATGTATGTTGTACTTGGAGTATTGCTCG +
Preference number: 6 (lower is better)
Translates to: DDLADALSQLLY*SLCMLYLEYCS
Trigger: CGAGCAATACTCCAAGTACAACATACATAAAGATCAGTACAGAAGCTGTGATAACGCGTCCGCCAAGTCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS TCA 72 bp TTACCCTGTGGACTTTCATCAAAAACCAGGGACTGCTaGTACAAGGGATCGAGAGTTTTCCGTGCAATTCTT +
Preference number: 6 (lower is better)
Translates to: LPCGLSSKTRDC*YKGSRVFRAIL
Trigger: AAGAATTGCACGGAAAACTCTCGATCCCTTGTATCAGCAGTCCCTGGTTTTTGATGAAAGTCCACAGGGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS TCA 72 bp TCTTTCAGACTTTCTGGAGTGCCTTTCTCGTTCTGGTaGATGCAAACTAGTATCTGGTCTCAAGCAGTTGGT +
Preference number: 6 (lower is better)
Translates to: SFRLSGVPFSFW*MQTSIWSQAVG
Trigger: ACCAACTGCTTGAGACCAGATACTAGTTTGCATTCACCAGAACGAGAAAGGCACTCCAGAAAGTCTGAAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115273.10
CDS GCA 72 bp AGATCTGTTGCTTGTAGAACATTTACAATCAGCTGGTaGCCCACCTTATCATACCACAGCTTCACTGAGAGT +
Preference number: 6 (lower is better)
Translates to: RSVACRTFTISW*PTLSYHSFTES
Trigger: ACTCTCAGTGAAGCTGTGGTATGATAAGGTGGGGCACCAGCTGATTGTAAATGTTCTACAAGCAACAGATCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp TCAGACTTTCTGGAGTGCCTTTCTCGTTCTGGTGAATaGAAACTAGTATCTGGTCTCAAGCAGTTGGTACTA +
Preference number: 6 (lower is better)
Translates to: SDFLECLSRSGE*KLVSGLKQLVL
Trigger: TAGTACCAACTGCTTGAGACCAGATACTAGTTTGCATTCACCAGAACGAGAAAGGCACTCCAGAAAGTCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115273.10
CDS CAA 72 bp TATGTTGTACTTGGAGTATTGCTCGTGGTCAAGTTCTaGACTAGACCCAGACCCTGTTGTCTGCTTAAATCG +
Preference number: 6 (lower is better)
Translates to: YVVLGVLLVVKF*TRPRPCCLLKS
Trigger: CGATTTAAGCAGACAACAGGGTCTGGGTCTAGTCAAGAACTTGACCACGAGCAATACTCCAAGTACAACATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS CAA 72 bp AATAATGCACCTGATTCTTTGGGCATGGTTGTTCTTTaGTTAAGAATAACACGGCCGATTAATCGGTCCCCC +
Preference number: 6 (lower is better)
Translates to: NNAPDSLGMVVL*LRITRPINRSP
Trigger: GGGGGACCGATTAATCGGCCGTGTTATTCTTAACAAAAGAACAACCATGCCCAAAGAATCAGGTGCATTATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000239255.2
CDS CAA 72 bp CCAACCACCTTGAGACCCAATAATGCACCTGATTCTTaGGGCATGGTTGTTCTTTTGTTAAGAATAACACGG +
Preference number: 6 (lower is better)
Translates to: PTTLRPNNAPDS*GMVVLLLRITR
Trigger: CCGTGTTATTCTTAACAAAAGAACAACCATGCCCAAAGAATCAGGTGCATTATTGGGTCTCAAGGTGGTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000239255.2
CDS CAA 90 bp TTGAGACCCAATAATGCACCTGATTCTTTGGGCATGGTTGTTCTTTaGTTAAGAATAACACGGCCGATTAATCGGTCCCCCTCTTTAGAT +
Preference number: 6 (lower is better)
Translates to: LRPNNAPDSLGMVVL*LRITRPINRSPSLD
Trigger: ATCTAAAGAGGGGGACCGATTAATCGGCCGTGTTATTCTTAACAAAAGAACAACCATGCCCAAAGAATCAGGTGCATTATTGGGTCTCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000239255.2
CDS CAA 90 bp ATCTTTATGTATGTTGTACTTGGAGTATTGCTCGTGGTCAAGTTCTaGACTAGACCCAGACCCTGTTGTCTGCTTAAATCGGTGTACCTT +
Preference number: 6 (lower is better)
Translates to: IFMYVVLGVLLVVKF*TRPRPCCLLKSVYL
Trigger: AAGGTACACCGATTTAAGCAGACAACAGGGTCTGGGTCTAGTCAAGAACTTGACCACGAGCAATACTCCAAGTACAACATACATAAAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
CDS GCA 72 bp AGGATGGAGGGAACAATTTATACCATCCAATCACCATaGTGGACAGATCAAGTTCTTCCAACAAGATTTGAG +
Preference number: 6 (lower is better)
Translates to: RMEGTIYTIQSP*WTDQVLPTRFE
Trigger: CTCAAATCTTGTTGGAAGAACTTGATCTGTCCAGCATGGTGATTGGATGGTATAAATTGTTCCCTCCATCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000164877.8
CDS CAA 90 bp ATTTTTCCTCCAACCACCTTGAGACCCAATAATGCACCTGATTCTTaGGGCATGGTTGTTCTTTTGTTAAGAATAACACGGCCGATTAAT +
Preference number: 6 (lower is better)
Translates to: IFPPTTLRPNNAPDS*GMVVLLLRITRPIN
Trigger: ATTAATCGGCCGTGTTATTCTTAACAAAAGAACAACCATGCCCAAAGAATCAGGTGCATTATTGGGTCTCAAGGTGGTTGGAGGAAAAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000081544.14
ENSMUST00000097808.9
ENSMUST00000097809.11
ENSMUST00000115273.10
ENSMUST00000239255.2