RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RIMKLB (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040649

Ensembl transcript IDs: ENSMUST00000068242.9, ENSMUST00000146274.8, ENSMUST00000204045.2, ENSMUST00000204731.2, ENSMUST00000205114.2

Found 103 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAGGCTGGGCTGGGCACGGTCCGAGCCACTGCACTGAGCACGCACTaGGCAGCTGCGTTACTGGGGGAGGGGAAGTTTAGAAGGGCACTG +
Preference number: 1 (lower is better)
Translates to: QAGLGTVRATALSTH*AAALLGEGKFRRAL
Trigger: CAGTGCCCTTCTAAACTTCCCCTCCCCCAGTAACGCAGCTGCGCAGTGCGTGCTCAGTGCAGTGGCTCGGACCGTGCCCAGCCCAGCCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
3UTR GCA 90 bp ATCTCTCTGCTGACAGCAGGCTGGGCTGGGCACGGTCCGAGCCACTaGACTGAGCACGCACTGCGCAGCTGCGTTACTGGGGGAGGGGAA +
Preference number: 1 (lower is better)
Translates to: ISLLTAGWAGHGPSH*TEHALRSCVTGGGE
Trigger: TTCCCCTCCCCCAGTAACGCAGCTGCGCAGTGCGTGCTCAGTGCAGTGGCTCGGACCGTGCCCAGCCCAGCCTGCTGTCAGCAGAGAGAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
3UTR TCA 90 bp TCTGCTGACAGCAGGCTGGGCTGGGCACGGTCCGAGCCACTGCACTaGGCACGCACTGCGCAGCTGCGTTACTGGGGGAGGGGAAGTTTA +
Preference number: 1 (lower is better)
Translates to: SADSRLGWARSEPLH*ARTAQLRYWGRGSL
Trigger: TAAACTTCCCCTCCCCCAGTAACGCAGCTGCGCAGTGCGTGCTCAGTGCAGTGGCTCGGACCGTGCCCAGCCCAGCCTGCTGTCAGCAGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
3UTR CCA 90 bp TTCTCTGCTGCCACCTACCAGTTTATCTCTCTGCTGACAGCAGGCTaGGCTGGGCACGGTCCGAGCCACTGCACTGAGCACGCACTGCGC +
Preference number: 1 (lower is better)
Translates to: FSAATYQFISLLTAG*AGHGPSHCTEHALR
Trigger: GCGCAGTGCGTGCTCAGTGCAGTGGCTCGGACCGTGCCCAGCCCAGCCTGCTGTCAGCAGAGAGATAAACTGGTAGGTGGCAGCAGAGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
3UTR CCA 90 bp CACCTTCCCTACTTACAGTCTGCGTGTGAGTGTGGCACCCGAGGGTaGCTGATGAGAGCTGCACTTCAACACAGTGGCTGTGTGACCAGG +
Preference number: 1 (lower is better)
Translates to: HLPYLQSACECGTRG*LMRAALQHSGCVTR
Trigger: CCTGGTCACACAGCCACTGTGTTGAAGTGCAGCTCTCATCAGCCACCCTCGGGTGCCACACTCACACGCAGACTGTAAGTAGGGAAGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
3UTR CCA 90 bp GCCTTCCTGAGTCCAGTTTTCATCTGTGCTGCCCCTCGCTCCACTTaGTACGTCACATGCTATCTCTTCTCCTATGTAGGTTTAAGGTCA +
Preference number: 1 (lower is better)
Translates to: AFLSPVFICAAPRST*YVTCYLFSYVGLRS
Trigger: TGACCTTAAACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGGGCAGCACAGATGAAAACTGGACTCAGGAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
3UTR TCA 90 bp TTACTTCATCAATGGAGACAACATTCAGTAAAGAGGCAGCCTTCCTaGGTCCAGTTTTCATCTGTGCTGCCCCTCGCTCCACTTGGTACG +
Preference number: 1 (lower is better)
Translates to: LLHQWRQHSVKRQPS*VQFSSVLPLAPLGT
Trigger: CGTACCAAGTGGAGCGAGGGGCAGCACAGATGAAAACTGGACTCAGGAAGGCTGCCTCTTTACTGAATGTTGTCTCCATTGATGAAGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
3UTR TCA 90 bp CCTTTCACGTTCTCATGGCCTATGAGCAGGGTTTTCATACGTAACTaGAAAGGTTACCATGAGAGCCTGCCATTTCTCTCTGTGTCACCT +
Preference number: 1 (lower is better)
Translates to: PFTFSWPMSRVFIRN*KGYHESLPFLSVSP
Trigger: AGGTGACACAGAGAGAAATGGCAGGCTCTCATGGTAACCTTTTCAGTTACGTATGAAAACCCTGCTCATAGGCCATGAGAACGTGAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR-3UTR CCA 90 bp GCCCCTCGCTCCACTTGGTACGTCACATGCTATCTCTTCTCCTATGTAGGTTTACTGCTGACAGCAGGCTaGGCTGGGCACGGTCCGAGC +
Preference number: 2 (lower is better)
Translates to: APRSTWYVTCYLFSYVGLLLTAG*AGHGPS
Trigger: GCTCGGACCGTGCCCAGCCCAGCCTGCTGTCAGCAG...TAAACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
3UTR-3UTR TCA 90 bp CCCTCGCTCCACTTGGTACGTCACATGCTATCTCTTCTCCTATGTAGGTTTAAGAGTTTATCTCTCTGCTaGCAGCAGGCTGGGCTGGGC +
Preference number: 2 (lower is better)
Translates to: PSLHLVRHMLSLLLCRFKSLSLC*QQAGLG
Trigger: GCCCAGCCCAGCCTGCTGTCAGCAGAGAGATAAACT...CTTAAACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
3UTR-3UTR TCA 90 bp GCCCCTCGCTCCACTTGGTACGTCACATGCTATCTCTTCTCCTATGTAGGTTTAAGTTTAGAAGGGCACTaGCCCCAAAGCTCCCAAAAC +
Preference number: 2 (lower is better)
Translates to: APRSTWYVTCYLFSYVGLSLEGH*PQSSQN
Trigger: GTTTTGGGAGCTTTGGGGTCAGTGCCCTTCTAAACT...TAAACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
3UTR-3UTR CCA 90 bp CTGAATGCAACAAGATATAAAGAACCAATTCCTTCTTATTCTGCATTCTTCCCCGACAGCAGGCTGGGCTaGGCACGGTCCGAGCCACTG +
Preference number: 2 (lower is better)
Translates to: LNATRYKEPIPSYSAFFPDSRLG*ARSEPL
Trigger: CAGTGGCTCGGACCGTGCCCAGCCCAGCCTGCTGTC...GGGGAAGAATGCAGAATAAGAAGGAATTGGTTCTTTATATCTTGTTGCATTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
3UTR-3UTR TCA 90 bp GAGGGGATCGTGTCTCACCAGCCAAATAGCCCACAAACCTTCTCAAAAACAGCGAGGGAAAAATTATGTTaGCCCCTGAAGCATCTCCAC +
Preference number: 2 (lower is better)
Translates to: EGIVSHQPNSPQTFSKTAREKLC*PLKHLH
Trigger: GTGGAGATGCTTCAGGGGTCAACATAATTTTTCCCT...CGCTGTTTTTGAGAAGGTTTGTGGGCTATTTGGCTGGTGAGACACGATCCCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
3UTR-3UTR TCA 90 bp AGAGCATTTGGGTTTCCACTCTTCTCCTTCTTGGATGAGATGACTGATGGTCAGCTGTGTGACCAGGAGTaGAACTGCTGGGAAAGCATC +
Preference number: 2 (lower is better)
Translates to: RAFGFPLFSFLDEMTDGQLCDQE*NCWESI
Trigger: GATGCTTTCCCAGCAGTTTCACTCCTGGTCACACAG...CTGACCATCAGTCATCTCATCCAAGAAGGAGAAGAGTGGAAACCCAAATGCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
3UTR-3UTR TCA 90 bp GAGGGGATCGTGTCTCACCAGCCAAATAGCCCACAAACCTTCTCAAAAACAGCGGCCTTGAAGTCTCCTTaGAGTAGTGTCCAAGAAATT +
Preference number: 2 (lower is better)
Translates to: EGIVSHQPNSPQTFSKTAALKSP*SSVQEI
Trigger: AATTTCTTGGACACTACTTCAAGGAGACTTCAAGGC...CGCTGTTTTTGAGAAGGTTTGTGGGCTATTTGGCTGGTGAGACACGATCCCCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
3UTR-3UTR TCA 90 bp TGCCCCTCGCTCCACTTGGTACGTCACATGCTATCTCTTCTCCTATGTAGGTTTCAACAGCCATCAGTCTaGAGAATTCCTTTCTCTGCT +
Preference number: 2 (lower is better)
Translates to: CPSLHLVRHMLSLLLCRFQQPSV*RIPFSA
Trigger: AGCAGAGAAAGGAATTCTTCAGACTGATGGCTGTTG...AAACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
3UTR-3UTR CCA 90 bp AGAGCATTTGGGTTTCCACTCTTCTCCTTCTTGGATGAGATGACTGATGGTCAGGTTAAAGGGAAGGTGTaGGGTGCAGGGAGACAGTTT +
Preference number: 2 (lower is better)
Translates to: RAFGFPLFSFLDEMTDGQVKGKV*GAGRQF
Trigger: AAACTGTCTCCCTGCACCCCACACCTTCCCTTTAAC...CTGACCATCAGTCATCTCATCCAAGAAGGAGAAGAGTGGAAACCCAAATGCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
3UTR-3UTR GCA 90 bp TGCCCCTCGCTCCACTTGGTACGTCACATGCTATCTCTTCTCCTATGTAGGTTTAATTCCTTTCTCTGCTaGCACCTACCAGTTTATCTC +
Preference number: 2 (lower is better)
Translates to: CPSLHLVRHMLSLLLCRFNSFLC*HLPVYL
Trigger: GAGATAAACTGGTAGGTGGCAGCAGAGAAAGGAATT...AAACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
3UTR-3UTR CCA 90 bp AGAGCATTTGGGTTTCCACTCTTCTCCTTCTTGGATGAGATGACTGATGGTCAGAACAGCATTGCAAGTTaGTTAAAGGGAAGGTGTGGG +
Preference number: 2 (lower is better)
Translates to: RAFGFPLFSFLDEMTDGQNSIAS*LKGRCG
Trigger: CCCACACCTTCCCTTTAACCAACTTGCAATGCTGTT...CTGACCATCAGTCATCTCATCCAAGAAGGAGAAGAGTGGAAACCCAAATGCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
3UTR-3UTR GCA 90 bp GAGGGGATCGTGTCTCACCAGCCAAATAGCCCACAAACCTTCTCAAAAACAGCGTTGTATACCAGACATTaGAATACTGTTCATTTCCCT +
Preference number: 2 (lower is better)
Translates to: EGIVSHQPNSPQTFSKTALYTRH*NTVHFP
Trigger: AGGGAAATGAACAGTATTGCAATGTCTGGTATACAA...CGCTGTTTTTGAGAAGGTTTGTGGGCTATTTGGCTGGTGAGACACGATCCCCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
3UTR-3UTR TCA 90 bp CATAATGTAAGTGGCAACCAGATGGTCTTAGGATCTGATTCCACGGTTGTTCATGCACCCTGCAAAATATaGTCATTGAGCAAAGTACCA +
Preference number: 2 (lower is better)
Translates to: HNVSGNQMVLGSDSTVVHAPCKI*SLSKVP
Trigger: TGGTACTTTGCTCAATGATCATATTTTGCAGGGTGC...ATGAACAACCGTGGAATCAGATCCTAAGACCATCTGGTTGCCACTTACATTATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
3UTR-3UTR GCA 90 bp AGAGCATTTGGGTTTCCACTCTTCTCCTTCTTGGATGAGATGACTGATGGTCAGAAGGCTCATATTATATaGAGTTTGGGGCTTTCATCA +
Preference number: 2 (lower is better)
Translates to: RAFGFPLFSFLDEMTDGQKAHII*SLGLSS
Trigger: TGATGAAAGCCCCAAACTGCATATAATATGAGCCTT...CTGACCATCAGTCATCTCATCCAAGAAGGAGAAGAGTGGAAACCCAAATGCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
3UTR-3UTR GCA 90 bp TGCAGTCATAGAACAAGGGTGTTACCAGCATGTATTAAAAATGCAACATTAACAAGGGAAGGTGTGGGGTaGAGGGAGACAGTTTTACAA +
Preference number: 2 (lower is better)
Translates to: CSHRTRVLPACIKNATLTREGVG*RETVLQ
Trigger: TTGTAAAACTGTCTCCCTGCACCCCACACCTTCCCT...TGTTAATGTTGCATTTTTAATACATGCTGGTAACACCCTTGTTCTATGACTGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR-3UTR GCA 90 bp AAGCATCTCCACTTCTTAACACATCTTCCAGACTCATCACTAGATTGTTTTATTAGGGAAGGTGTGGGGTaGAGGGAGACAGTTTTACAA +
Preference number: 2 (lower is better)
Translates to: KHLHFLTHLPDSSLDCFIREGVG*RETVLQ
Trigger: TTGTAAAACTGTCTCCCTGCACCCCACACCTTCCCT...AATAAAACAATCTAGTGATGAGTCTGGAAGATGTGTTAAGAAGTGGAGATGCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR-3UTR CCA 90 bp AAGCATCTCCACTTCTTAACACATCTTCCAGACTCATCACTAGATTGTTTTATTGTTAAAGGGAAGGTGTaGGGTGCAGGGAGACAGTTT +
Preference number: 2 (lower is better)
Translates to: KHLHFLTHLPDSSLDCFIVKGKV*GAGRQF
Trigger: AAACTGTCTCCCTGCACCCCACACCTTCCCTTTAAC...AATAAAACAATCTAGTGATGAGTCTGGAAGATGTGTTAAGAAGTGGAGATGCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR-3UTR TCA 90 bp CATAATGTAAGTGGCAACCAGATGGTCTTAGGATCTGATTCCACGGTTGTTCATGTTTTATTATTGCCTTaGAGTCTCCTTGAAGTAGTG +
Preference number: 2 (lower is better)
Translates to: HNVSGNQMVLGSDSTVVHVLLLP*SLLEVV
Trigger: CACTACTTCAAGGAGACTTCAAGGCAATAATAAAAC...ATGAACAACCGTGGAATCAGATCCTAAGACCATCTGGTTGCCACTTACATTATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
3UTR-3UTR GCA 90 bp CATAATGTAAGTGGCAACCAGATGGTCTTAGGATCTGATTCCACGGTTGTTCATACATGTACACTTGCATaGGACATATATACTCCTTTC +
Preference number: 2 (lower is better)
Translates to: HNVSGNQMVLGSDSTVVHTCTLA*DIYTPF
Trigger: GAAAGGAGTATATATGTCGCATGCAAGTGTACATGT...ATGAACAACCGTGGAATCAGATCCTAAGACCATCTGGTTGCCACTTACATTATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
3UTR-3UTR GCA 90 bp TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTAACATGTACACTTGCATaGGACATATATACTCCTTTC +
Preference number: 2 (lower is better)
Translates to: WSVLNEGLGVGLYETQYLTCTLA*DIYTPF
Trigger: GAAAGGAGTATATATGTCGCATGCAAGTGTACATGT...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR-3UTR GCA 90 bp CATAATGTAAGTGGCAACCAGATGGTCTTAGGATCTGATTCCACGGTTGTTCATAACTGCTTCCCATCATaGCATTCACTAGAATCTATT +
Preference number: 2 (lower is better)
Translates to: HNVSGNQMVLGSDSTVVHNCFPS*HSLESI
Trigger: AATAGATTCTAGTGAATGGCATGATGGGAAGCAGTT...ATGAACAACCGTGGAATCAGATCCTAAGACCATCTGGTTGCCACTTACATTATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
3UTR-3UTR GCA 90 bp TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTAAACTGCTTCCCATCATaGCATTCACTAGAATCTATT +
Preference number: 2 (lower is better)
Translates to: WSVLNEGLGVGLYETQYLNCFPS*HSLESI
Trigger: AATAGATTCTAGTGAATGGCATGATGGGAAGCAGTT...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR-3UTR GCA 90 bp GGTGACAAAGATCTATCTTCATCCAGAACATCACTGGTTACTTCATCAATGGAGACTTGGTACGTCACATaGTATCTCTTCTCCTATGTA +
Preference number: 2 (lower is better)
Translates to: GDKDLSSSRTSLVTSSMETWYVT*YLFSYV
Trigger: TACATAGGAGAAGAGATAGCATGTGACGTACCAAGT...CTCCATTGATGAAGTAACCAGTGATGTTCTGGATGAAGATAGATCTTTGTCACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
3UTR-3UTR CCA 90 bp AAAAGCTTAAGGAACATTTACTTTCCTGTTGTCTTTAGGGGAGAATCTCTATACAACAGCATTGCAAGTTaGTTAAAGGGAAGGTGTGGG +
Preference number: 2 (lower is better)
Translates to: KSLRNIYFPVVFRGESLYNSIAS*LKGRCG
Trigger: CCCACACCTTCCCTTTAACCAACTTGCAATGCTGTT...GTATAGAGATTCTCCCCTAAAGACAACAGGAAAGTAAATGTTCCTTAAGCTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR CAA 90 bp GTTTTGAGTGGTGTCTTGTTAACCAAAAGTAGCATATTGTTTACTTaGGCCATTGTTAAAGATGCAGTCATAGAACAAGGGTGTTACCAG +
Preference number: 2 (lower is better)
Translates to: VLSGVLLTKSSILFT*AIVKDAVIEQGCYQ
Trigger: CTGGTAACACCCTTGTTCTATGACTGCATCTTTAACAATGGCCAAAGTAAACAATATGCTACTTTTGGTTAACAAGACACCACTCAAAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR-3UTR TCA 90 bp TGCAGTCATAGAACAAGGGTGTTACCAGCATGTATTAAAAATGCAACATTAACATGTAACTCAACCTTCTaGACATTCTCCATGAACAGC +
Preference number: 2 (lower is better)
Translates to: CSHRTRVLPACIKNATLTCNSTF*TFSMNS
Trigger: GCTGTTCATGGAGAATGTTCAGAAGGTTGAGTTACA...TGTTAATGTTGCATTTTTAATACATGCTGGTAACACCCTTGTTCTATGACTGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR-3UTR TCA 90 bp AAAAGCTTAAGGAACATTTACTTTCCTGTTGTCTTTAGGGGAGAATCTCTATACTGTAACTCAACCTTCTaGACATTCTCCATGAACAGC +
Preference number: 2 (lower is better)
Translates to: KSLRNIYFPVVFRGESLYCNSTF*TFSMNS
Trigger: GCTGTTCATGGAGAATGTTCAGAAGGTTGAGTTACA...GTATAGAGATTCTCCCCTAAAGACAACAGGAAAGTAAATGTTCCTTAAGCTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR-3UTR TCA 90 bp ACAGGTACTATTCTAGTTGTCAATGAAACCTTTCGCTCCGCTTTAATACTTAATGCCTTGAAGTCTCCTTaGAGTAGTGTCCAAGAAATT +
Preference number: 2 (lower is better)
Translates to: TGTILVVNETFRSALILNALKSP*SSVQEI
Trigger: AATTTCTTGGACACTACTTCAAGGAGACTTCAAGGC...ATTAAGTATTAAAGCGGAGCGAAAGGTTTCATTGACAACTAGAATAGTACCTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR TCA 72 bp AGCAGGCTGGGCTGGGCACGGTCCGAGCCACTGCACTaGGCACGCACTGCGCAGCTGCGTTACTGGGGGAGG +
Preference number: 3 (lower is better)
Translates to: SRLGWARSEPLH*ARTAQLRYWGR
Trigger: CCTCCCCCAGTAACGCAGCTGCGCAGTGCGTGCTCAGTGCAGTGGCTCGGACCGTGCCCAGCCCAGCCTGCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
3UTR GCA 72 bp CTGACAGCAGGCTGGGCTGGGCACGGTCCGAGCCACTaGACTGAGCACGCACTGCGCAGCTGCGTTACTGGG +
Preference number: 3 (lower is better)
Translates to: LTAGWAGHGPSH*TEHALRSCVTG
Trigger: CCCAGTAACGCAGCTGCGCAGTGCGTGCTCAGTGCAGTGGCTCGGACCGTGCCCAGCCCAGCCTGCTGTCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
3UTR TCA 72 bp CTTTCTCTGCTGCCACCTACCAGTTTATCTCTCTGCTaGCAGCAGGCTGGGCTGGGCACGGTCCGAGCCACT +
Preference number: 3 (lower is better)
Translates to: LSLLPPTSLSLC*QQAGLGTVRAT
Trigger: AGTGGCTCGGACCGTGCCCAGCCCAGCCTGCTGTCAGCAGAGAGATAAACTGGTAGGTGGCAGCAGAGAAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
3UTR CCA 72 bp TACTTACAGTCTGCGTGTGAGTGTGGCACCCGAGGGTaGCTGATGAGAGCTGCACTTCAACACAGTGGCTGT +
Preference number: 3 (lower is better)
Translates to: YLQSACECGTRG*LMRAALQHSGC
Trigger: ACAGCCACTGTGTTGAAGTGCAGCTCTCATCAGCCACCCTCGGGTGCCACACTCACACGCAGACTGTAAGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
3UTR GCA 72 bp AGAGGCAGCCTTCCTGAGTCCAGTTTTCATCTGTGCTaGCCCTCGCTCCACTTGGTACGTCACATGCTATCT +
Preference number: 3 (lower is better)
Translates to: RGSLPESSFHLC*PSLHLVRHMLS
Trigger: AGATAGCATGTGACGTACCAAGTGGAGCGAGGGGCAGCACAGATGAAAACTGGACTCAGGAAGGCTGCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
3UTR TCA 72 bp AGCTGCACTTCAACACAGTGGCTGTGTGACCAGGAGTaGAACTGCTGGGAAAGCATCTTAGAGCAATGCTTG +
Preference number: 3 (lower is better)
Translates to: SCTSTQWLCDQE*NCWESILEQCL
Trigger: CAAGCATTGCTCTAAGATGCTTTCCCAGCAGTTTCACTCCTGGTCACACAGCCACTGTGTTGAAGTGCAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
3UTR CCA 72 bp AGTCCAGTTTTCATCTGTGCTGCCCCTCGCTCCACTTaGTACGTCACATGCTATCTCTTCTCCTATGTAGGT +
Preference number: 3 (lower is better)
Translates to: SPVFICAAPRST*YVTCYLFSYVG
Trigger: ACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGGGCAGCACAGATGAAAACTGGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
3UTR-3UTR CAA 90 bp TCATACGTAACTGAAAAGGTTACCATGAGAGCCTGCCATTTCTCTCTGTGTCACGAACAGCATTGCAAGTaGGTTAAAGGGAAGGTGTGG +
Preference number: 3 (lower is better)
Translates to: SYVTEKVTMRACHFSLCHEQHCK*VKGKVW
Trigger: CCACACCTTCCCTTTAACCAACTTGCAATGCTGTTC...GTGACACAGAGAGAAATGGCAGGCTCTCATGGTAACCTTTTCAGTTACGTATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR TCA 72 bp TTCTCATGGCCTATGAGCAGGGTTTTCATACGTAACTaGAAAGGTTACCATGAGAGCCTGCCATTTCTCTCT +
Preference number: 3 (lower is better)
Translates to: FSWPMSRVFIRN*KGYHESLPFLS
Trigger: AGAGAGAAATGGCAGGCTCTCATGGTAACCTTTTCAGTTACGTATGAAAACCCTGCTCATAGGCCATGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR TCA 72 bp CCTAAAGATAGACTCCTTGTGAGTCTTGAGGTGAGTTaGGAAGAGTGCACCGGTTACAGGTACTATTCTAGT +
Preference number: 3 (lower is better)
Translates to: PKDRLLVSLEVS*EECTGYRYYSS
Trigger: ACTAGAATAGTACCTGTAACCGGTGCACTCTTCTCAACTCACCTCAAGACTCACAAGGAGTCTATCTTTAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR GCA 72 bp TCCTGTGCAAATCAGAACGTGCAGATGCAATTAAAGTaGCCTAAAGATAGACTCCTTGTGAGTCTTGAGGTG +
Preference number: 3 (lower is better)
Translates to: SCANQNVQMQLK*PKDRLLVSLEV
Trigger: CACCTCAAGACTCACAAGGAGTCTATCTTTAGGGCACTTTAATTGCATCTGCACGTTCTGATTTGCACAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR GCA 72 bp TTTTCATACGTAACTGAAAAGGTTACCATGAGAGCCTaGCATTTCTCTCTGTGTCACCTAGTATTCCTCTGT +
Preference number: 3 (lower is better)
Translates to: FSYVTEKVTMRA*HFSLCHLVFLC
Trigger: ACAGAGGAATACTAGGTGACACAGAGAGAAATGGCAGGCTCTCATGGTAACCTTTTCAGTTACGTATGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR-3UTR CAA 90 bp ACAGGTACTATTCTAGTTGTCAATGAAACCTTTCGCTCCGCTTTAATACTTAATGAACAGCATTGCAAGTaGGTTAAAGGGAAGGTGTGG +
Preference number: 3 (lower is better)
Translates to: TGTILVVNETFRSALILNEQHCK*VKGKVW
Trigger: CCACACCTTCCCTTTAACCAACTTGCAATGCTGTTC...ATTAAGTATTAAAGCGGAGCGAAAGGTTTCATTGACAACTAGAATAGTACCTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR-3UTR CAA 90 bp TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTACATGCTACTAAGTACTaGGATCAAAACCATTCTACA +
Preference number: 3 (lower is better)
Translates to: WSVLNEGLGVGLYETQYLHATKY*DQNHST
Trigger: TGTAGAATGGTTTTGATCCAAGTACTTAGTAGCATG...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR-3UTR CAA 90 bp TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTATCCTCTTTACAAATCTaGAAACTGAAGTCATGCTAC +
Preference number: 3 (lower is better)
Translates to: WSVLNEGLGVGLYETQYLSSLQI*KLKSCY
Trigger: GTAGCATGACTTCAGTTTCAAGATTTGTAAAGAGGA...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR GCA 72 bp CACGGTTGTTCATTTATTTGTCTATACCAAATACCATaGACCCTGCAAAATATGATCATTGAGCAAAGTACC +
Preference number: 3 (lower is better)
Translates to: HGCSFICLYQIP*TLQNMIIEQST
Trigger: GGTACTTTGCTCAATGATCATATTTTGCAGGGTGCATGGTATTTGGTATAGACAAATAAATGAACAACCGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
3UTR CCA 72 bp AAGGTGACAAAGATCTATCTTCATCCAGAACATCACTaGTTACTTCATCAATGGAGACAACATTCAGTAAAG +
Preference number: 3 (lower is better)
Translates to: KVTKIYLHPEHH*LLHQWRQHSVK
Trigger: CTTTACTGAATGTTGTCTCCATTGATGAAGTAACCAGTGATGTTCTGGATGAAGATAGATCTTTGTCACCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
3UTR-3UTR CAA 90 bp ACAGGTACTATTCTAGTTGTCAATGAAACCTTTCGCTCCGCTTTAATACTTAATTCCTCTTTACAAATCTaGAAACTGAAGTCATGCTAC +
Preference number: 3 (lower is better)
Translates to: TGTILVVNETFRSALILNSSLQI*KLKSCY
Trigger: GTAGCATGACTTCAGTTTCAAGATTTGTAAAGAGGA...ATTAAGTATTAAAGCGGAGCGAAAGGTTTCATTGACAACTAGAATAGTACCTGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR-3UTR CAA 90 bp TGCAGTCATAGAACAAGGGTGTTACCAGCATGTATTAAAAATGCAACATTAACATTTGTATACCAGACATaGCAATACTGTTCATTTCCC +
Preference number: 3 (lower is better)
Translates to: CSHRTRVLPACIKNATLTFVYQT*QYCSFP
Trigger: GGGAAATGAACAGTATTGCAATGTCTGGTATACAAA...TGTTAATGTTGCATTTTTAATACATGCTGGTAACACCCTTGTTCTATGACTGCA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR TCA 72 bp TTTGTCTATACCAAATACCATGCACCCTGCAAAATATaGTCATTGAGCAAAGTACCAAGTACTTTTATTCTG +
Preference number: 3 (lower is better)
Translates to: FVYTKYHAPCKI*SLSKVPSTFIL
Trigger: CAGAATAAAAGTACTTGGTACTTTGCTCAATGATCATATTTTGCAGGGTGCATGGTATTTGGTATAGACAAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
CDS-3UTR TCA 90 bp TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTAGGGACATGCGCCGGGTaGGCCGGCCAGCGGGCAGAA +
Preference number: 4 (lower is better)
Translates to: WSVLNEGLGVGLYETQYLGTCAG*AGQRAE
Trigger: TTCTGCCCGCTGGCCGGCTCACCCGGCGCATGTCCC...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS-3UTR TCA 90 bp TCATACGTAACTGAAAAGGTTACCATGAGAGCCTGCCATTTCTCTCTGTGTCACCCCCTGGGAGCTTGGTaGGCATCTCTCGCTCGGTGG +
Preference number: 4 (lower is better)
Translates to: SYVTEKVTMRACHFSLCHPLGAW*ASLARW
Trigger: CCACCGAGCGAGAGATGCTCACCAAGCTCCCAGGGG...GTGACACAGAGAGAAATGGCAGGCTCTCATGGTAACCTTTTCAGTTACGTATGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS-3UTR TCA 90 bp TCATCTGTGCTGCCCCTCGCTCCACTTGGTACGTCACATGCTATCTCTTCTCCTCAGTTAAGGATGGCTTaGGGTCGGTTCATCAATCGG +
Preference number: 4 (lower is better)
Translates to: SSVLPLAPLGTSHAISSPQLRMA*GRFINR
Trigger: CCGATTGATGAACCGACCTCAAGCCATCCTTAACTG...AGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGGGCAGCACAGATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
CDS-3UTR TCA 90 bp AAAAGCTTAAGGAACATTTACTTTCCTGTTGTCTTTAGGGGAGAATCTCTATACGGGACATGCGCCGGGTaGGCCGGCCAGCGGGCAGAA +
Preference number: 4 (lower is better)
Translates to: KSLRNIYFPVVFRGESLYGTCAG*AGQRAE
Trigger: TTCTGCCCGCTGGCCGGCTCACCCGGCGCATGTCCC...GTATAGAGATTCTCCCCTAAAGACAACAGGAAAGTAAATGTTCCTTAAGCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS-3UTR GCA 90 bp TGCCCCTCGCTCCACTTGGTACGTCACATGCTATCTCTTCTCCTATGTAGGTTTAACAGCGTAGCATGGTaGCAACTACACGACCTCCCA +
Preference number: 4 (lower is better)
Translates to: CPSLHLVRHMLSLLLCRFNSVAW*QLHDLP
Trigger: TGGGAGGTCGTGTAGTTGGCACCATGCTACGCTGTT...AAACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
CDS-3UTR GCA 90 bp GAGGGGATCGTGTCTCACCAGCCAAATAGCCCACAAACCTTCTCAAAAACAGCGCGCCTAGGGAACAGTTaGTTTGCATCCTTCCATCTG +
Preference number: 4 (lower is better)
Translates to: EGIVSHQPNSPQTFSKTARLGNS*FASFHL
Trigger: CAGATGGAAGGATGCAAAGCAACTGTTCCCTAGGCG...CGCTGTTTTTGAGAAGGTTTGTGGGCTATTTGGCTGGTGAGACACGATCCCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
CDS-3UTR TCA 90 bp ACAGGTACTATTCTAGTTGTCAATGAAACCTTTCGCTCCGCTTTAATACTTAATCCCCTGGGAGCTTGGTaGGCATCTCTCGCTCGGTGG +
Preference number: 4 (lower is better)
Translates to: TGTILVVNETFRSALILNPLGAW*ASLARW
Trigger: CCACCGAGCGAGAGATGCTCACCAAGCTCCCAGGGG...ATTAAGTATTAAAGCGGAGCGAAAGGTTTCATTGACAACTAGAATAGTACCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS-3UTR CCA 90 bp TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTAGCATCTCTCGCTCGGTaGTGCTTTCAGGGTCGCTAT +
Preference number: 4 (lower is better)
Translates to: WSVLNEGLGVGLYETQYLASLAR*CFQGRY
Trigger: ATAGCGACCCTGAAAGCACCACCGAGCGAGAGATGC...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS-3UTR GCA 90 bp TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTATCTCTCGCTCGGTGGTaGTTTCAGGGTCGCTATCAA +
Preference number: 4 (lower is better)
Translates to: WSVLNEGLGVGLYETQYLSLARW*FQGRYQ
Trigger: TTGATAGCGACCCTGAAAGCACCACCGAGCGAGAGA...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS-3UTR TCA 90 bp AGAGCATTTGGGTTTCCACTCTTCTCCTTCTTGGATGAGATGACTGATGGTCAGACAGCTTTGCCTCTATaGCCCCTTGTATTCTTCACT +
Preference number: 4 (lower is better)
Translates to: RAFGFPLFSFLDEMTDGQTALPL*PLVFFT
Trigger: AGTGAAGAATACAAGGGGTCATAGAGGCAAAGCTGT...CTGACCATCAGTCATCTCATCCAAGAAGGAGAAGAGTGGAAACCCAAATGCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
CDS-3UTR TCA 90 bp CCTCGCTCCACTTGGTACGTCACATGCTATCTCTTCTCCTATGTAGGTTTAAGGGTATATTTTGGCTCCTaGAAAGGATTTGCATTGGCC +
Preference number: 4 (lower is better)
Translates to: PRSTWYVTCYLFSYVGLRVYFGS*KGFALA
Trigger: GGCCAATGCAAATCCTTTTCAGGAGCCAAAATATAC...CCTTAAACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
CDS-3UTR GCA 90 bp ACATGCTATCTCTTCTCCTATGTAGGTTTAAGGTCAACAGCCATCAGTCTGAAGCGCCTAGGGAACAGTTaGTTTGCATCCTTCCATCTG +
Preference number: 4 (lower is better)
Translates to: TCYLFSYVGLRSTAISLKRLGNS*FASFHL
Trigger: CAGATGGAAGGATGCAAAGCAACTGTTCCCTAGGCG...CTTCAGACTGATGGCTGTTGACCTTAAACCTACATAGGAGAAGAGATAGCATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
CDS-3UTR GCA 90 bp GTTACTTCATCAATGGAGACAACATTCAGTAAAGAGGCAGCCTTCCTGAGTCCACTCCTGAAAAGGATTTaGATTGGCCTCGCAGACACA +
Preference number: 4 (lower is better)
Translates to: VTSSMETTFSKEAAFLSPLLKRI*IGLADT
Trigger: TGTGTCTGCGAGGCCAATGCAAATCCTTTTCAGGAG...TGGACTCAGGAAGGCTGCCTCTTTACTGAATGTTGTCTCCATTGATGAAGTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
CDS-3UTR CCA 90 bp ACATGCTATCTCTTCTCCTATGTAGGTTTAAGGTCAACAGCCATCAGTCTGAAGGGAAGAGGCACACCATaGCCAGCTAACTCTTGGAAT +
Preference number: 4 (lower is better)
Translates to: TCYLFSYVGLRSTAISLKGRGTP*PANSWN
Trigger: ATTCCAAGAGTTAGCTGGCCATGGTGTGCCTCTTCC...CTTCAGACTGATGGCTGTTGACCTTAAACCTACATAGGAGAAGAGATAGCATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
CDS-3UTR CCA 90 bp GAGGGGATCGTGTCTCACCAGCCAAATAGCCCACAAACCTTCTCAAAAACAGCGTTTCTGGAACAAATATaGAGCTTCATGCCGAATAAG +
Preference number: 4 (lower is better)
Translates to: EGIVSHQPNSPQTFSKTAFLEQI*SFMPNK
Trigger: CTTATTCGGCATGAAGCTCCATATTTGTTCCAGAAA...CGCTGTTTTTGAGAAGGTTTGTGGGCTATTTGGCTGGTGAGACACGATCCCCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
CDS-3UTR TCA 90 bp GTCACATGCTATCTCTTCTCCTATGTAGGTTTAAGGTCAACAGCCATCAGTCTGACAGCTTTGCCTCTATaGCCCCTTGTATTCTTCACT +
Preference number: 4 (lower is better)
Translates to: VTCYLFSYVGLRSTAISLTALPL*PLVFFT
Trigger: AGTGAAGAATACAAGGGGTCATAGAGGCAAAGCTGT...CAGACTGATGGCTGTTGACCTTAAACCTACATAGGAGAAGAGATAGCATGTGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
CDS-3UTR TCA 90 bp TCATACGTAACTGAAAAGGTTACCATGAGAGCCTGCCATTTCTCTCTGTGTCACACAGCTTTGCCTCTATaGCCCCTTGTATTCTTCACT +
Preference number: 4 (lower is better)
Translates to: SYVTEKVTMRACHFSLCHTALPL*PLVFFT
Trigger: AGTGAAGAATACAAGGGGTCATAGAGGCAAAGCTGT...GTGACACAGAGAGAAATGGCAGGCTCTCATGGTAACCTTTTCAGTTACGTATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS-3UTR CCA 90 bp ACATGCTATCTCTTCTCCTATGTAGGTTTAAGGTCAACAGCCATCAGTCTGAAGGAAAAGGATTTGCATTaGCCTCGCAGACACAGAAGG +
Preference number: 4 (lower is better)
Translates to: TCYLFSYVGLRSTAISLKEKDLH*PRRHRR
Trigger: CCTTCTGTGTCTGCGAGGCCAATGCAAATCCTTTTC...CTTCAGACTGATGGCTGTTGACCTTAAACCTACATAGGAGAAGAGATAGCATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
CDS-3UTR GCA 90 bp GTTACTTCATCAATGGAGACAACATTCAGTAAAGAGGCAGCCTTCCTGAGTCCAGAACTCCAGCACTTCTaGTTCATCAATCATCTTAGC +
Preference number: 4 (lower is better)
Translates to: VTSSMETTFSKEAAFLSPELQHF*FINHLS
Trigger: GCTAAGATGATTGATGAAGCAGAAGTGCTGGAGTTC...TGGACTCAGGAAGGCTGCCTCTTTACTGAATGTTGTCTCCATTGATGAAGTAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
CDS-3UTR CCA 90 bp CTGAATGCAACAAGATATAAAGAACCAATTCCTTCTTATTCTGCATTCTTCCCCGCATCCTTCCATCTGTaGAACAGCGTAGCATGGTGC +
Preference number: 4 (lower is better)
Translates to: LNATRYKEPIPSYSAFFPASFHL*NSVAWC
Trigger: GCACCATGCTACGCTGTTCCACAGATGGAAGGATGC...GGGGAAGAATGCAGAATAAGAAGGAATTGGTTCTTTATATCTTGTTGCATTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
CDS-3UTR CCA 90 bp TGCAGTCATAGAACAAGGGTGTTACCAGCATGTATTAAAAATGCAACATTAACAGCATCTCTCGCTCGGTaGTGCTTTCAGGGTCGCTAT +
Preference number: 4 (lower is better)
Translates to: CSHRTRVLPACIKNATLTASLAR*CFQGRY
Trigger: ATAGCGACCCTGAAAGCACCACCGAGCGAGAGATGC...TGTTAATGTTGCATTTTTAATACATGCTGGTAACACCCTTGTTCTATGACTGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS-3UTR TCA 90 bp ACAGGTACTATTCTAGTTGTCAATGAAACCTTTCGCTCCGCTTTAATACTTAATGTGGGTAGTCTTCCCTaGTGCGACGATCTGTCAAGA +
Preference number: 4 (lower is better)
Translates to: TGTILVVNETFRSALILNVGSLP*CDDLSR
Trigger: TCTTGACAGATCGTCGCATCAGGGAAGACTACCCAC...ATTAAGTATTAAAGCGGAGCGAAAGGTTTCATTGACAACTAGAATAGTACCTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
CDS-3UTR GCA 90 bp CATAATGTAAGTGGCAACCAGATGGTCTTAGGATCTGATTCCACGGTTGTTCATGAACTCCAGCACTTCTaGTTCATCAATCATCTTAGC +
Preference number: 4 (lower is better)
Translates to: HNVSGNQMVLGSDSTVVHELQHF*FINHLS
Trigger: GCTAAGATGATTGATGAAGCAGAAGTGCTGGAGTTC...ATGAACAACCGTGGAATCAGATCCTAAGACCATCTGGTTGCCACTTACATTATG
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
CDS-3UTR GCA 90 bp AAAAGCTTAAGGAACATTTACTTTCCTGTTGTCTTTAGGGGAGAATCTCTATACAACAGCGTAGCATGGTaGCAACTACACGACCTCCCA +
Preference number: 4 (lower is better)
Translates to: KSLRNIYFPVVFRGESLYNSVAW*QLHDLP
Trigger: TGGGAGGTCGTGTAGTTGGCACCATGCTACGCTGTT...GTATAGAGATTCTCCCCTAAAGACAACAGGAAAGTAAATGTTCCTTAAGCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS-3UTR CCA 90 bp TGCAGTCATAGAACAAGGGTGTTACCAGCATGTATTAAAAATGCAACATTAACAGCATCCTTCCATCTGTaGAACAGCGTAGCATGGTGC +
Preference number: 4 (lower is better)
Translates to: CSHRTRVLPACIKNATLTASFHL*NSVAWC
Trigger: GCACCATGCTACGCTGTTCCACAGATGGAAGGATGC...TGTTAATGTTGCATTTTTAATACATGCTGGTAACACCCTTGTTCTATGACTGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS-3UTR TCA 90 bp ACAGGTACTATTCTAGTTGTCAATGAAACCTTTCGCTCCGCTTTAATACTTAATCAGTTAAGGATGGCTTaGGGTCGGTTCATCAATCGG +
Preference number: 4 (lower is better)
Translates to: TGTILVVNETFRSALILNQLRMA*GRFINR
Trigger: CCGATTGATGAACCGACCTCAAGCCATCCTTAACTG...ATTAAGTATTAAAGCGGAGCGAAAGGTTTCATTGACAACTAGAATAGTACCTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS-3UTR TCA 90 bp AAAAGCTTAAGGAACATTTACTTTCCTGTTGTCTTTAGGGGAGAATCTCTATACCAGTTAAGGATGGCTTaGGGTCGGTTCATCAATCGG +
Preference number: 4 (lower is better)
Translates to: KSLRNIYFPVVFRGESLYQLRMA*GRFINR
Trigger: CCGATTGATGAACCGACCTCAAGCCATCCTTAACTG...GTATAGAGATTCTCCCCTAAAGACAACAGGAAAGTAAATGTTCCTTAAGCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS-3UTR GCA 90 bp AAGCATCTCCACTTCTTAACACATCTTCCAGACTCATCACTAGATTGTTTTATTCGCCTAGGGAACAGTTaGTTTGCATCCTTCCATCTG +
Preference number: 4 (lower is better)
Translates to: KHLHFLTHLPDSSLDCFIRLGNS*FASFHL
Trigger: CAGATGGAAGGATGCAAAGCAACTGTTCCCTAGGCG...AATAAAACAATCTAGTGATGAGTCTGGAAGATGTGTTAAGAAGTGGAGATGCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS-3UTR CCA 90 bp ACAGGTACTATTCTAGTTGTCAATGAAACCTTTCGCTCCGCTTTAATACTTAATGGAAGAGGCACACCATaGCCAGCTAACTCTTGGAAT +
Preference number: 4 (lower is better)
Translates to: TGTILVVNETFRSALILNGRGTP*PANSWN
Trigger: ATTCCAAGAGTTAGCTGGCCATGGTGTGCCTCTTCC...ATTAAGTATTAAAGCGGAGCGAAAGGTTTCATTGACAACTAGAATAGTACCTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS-3UTR CCA 90 bp GTTACTTCATCAATGGAGACAACATTCAGTAAAGAGGCAGCCTTCCTGAGTCCATTTCTGGAACAAATATaGAGCTTCATGCCGAATAAG +
Preference number: 4 (lower is better)
Translates to: VTSSMETTFSKEAAFLSPFLEQI*SFMPNK
Trigger: CTTATTCGGCATGAAGCTCCATATTTGTTCCAGAAA...TGGACTCAGGAAGGCTGCCTCTTTACTGAATGTTGTCTCCATTGATGAAGTAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
CDS-3UTR CCA 90 bp TCATACGTAACTGAAAAGGTTACCATGAGAGCCTGCCATTTCTCTCTGTGTCACTTTCTGGAACAAATATaGAGCTTCATGCCGAATAAG +
Preference number: 4 (lower is better)
Translates to: SYVTEKVTMRACHFSLCHFLEQI*SFMPNK
Trigger: CTTATTCGGCATGAAGCTCCATATTTGTTCCAGAAA...GTGACACAGAGAGAAATGGCAGGCTCTCATGGTAACCTTTTCAGTTACGTATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS-3UTR TCA 90 bp AAGCATCTCCACTTCTTAACACATCTTCCAGACTCATCACTAGATTGTTTTATTAGATTAGCTCTCCACTaGTCCGAAGACCCAGATTTC +
Preference number: 4 (lower is better)
Translates to: KHLHFLTHLPDSSLDCFIRLALH*SEDPDF
Trigger: GAAATCTGGGTCTTCGGATCAGTGGAGAGCTAATCT...AATAAAACAATCTAGTGATGAGTCTGGAAGATGTGTTAAGAAGTGGAGATGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
CDS-3UTR GCA 90 bp AAAAGCTTAAGGAACATTTACTTTCCTGTTGTCTTTAGGGGAGAATCTCTATACGAACTCCAGCACTTCTaGTTCATCAATCATCTTAGC +
Preference number: 4 (lower is better)
Translates to: KSLRNIYFPVVFRGESLYELQHF*FINHLS
Trigger: GCTAAGATGATTGATGAAGCAGAAGTGCTGGAGTTC...GTATAGAGATTCTCCCCTAAAGACAACAGGAAAGTAAATGTTCCTTAAGCTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
3UTR CAA 72 bp GGTGTCTTGTTAACCAAAAGTAGCATATTGTTTACTTaGGCCATTGTTAAAGATGCAGTCATAGAACAAGGG +
Preference number: 4 (lower is better)
Translates to: GVLLTKSSILFT*AIVKDAVIEQG
Trigger: CCCTTGTTCTATGACTGCATCTTTAACAATGGCCAAAGTAAACAATATGCTACTTTTGGTTAACAAGACACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS-3UTR CAA 90 bp CCCTCGCTCCACTTGGTACGTCACATGCTATCTCTTCTCCTATGTAGGTTTAAGTCTGCACCCATGGGGTaGGAACTCTCACTACCACCA +
Preference number: 5 (lower is better)
Translates to: PSLHLVRHMLSLLLCRFKSAPMG*ELSLPP
Trigger: TGGTGGTAGTGAGAGTTCCAACCCCATGGGTGCAGA...CTTAAACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
CDS-3UTR CAA 90 bp CATAATGTAAGTGGCAACCAGATGGTCTTAGGATCTGATTCCACGGTTGTTCATTCTGCACCCATGGGGTaGGAACTCTCACTACCACCA +
Preference number: 5 (lower is better)
Translates to: HNVSGNQMVLGSDSTVVHSAPMG*ELSLPP
Trigger: TGGTGGTAGTGAGAGTTCCAACCCCATGGGTGCAGA...ATGAACAACCGTGGAATCAGATCCTAAGACCATCTGGTTGCCACTTACATTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
CDS-3UTR CAA 90 bp TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTATCTGCACCCATGGGGTaGGAACTCTCACTACCACCA +
Preference number: 5 (lower is better)
Translates to: WSVLNEGLGVGLYETQYLSAPMG*ELSLPP
Trigger: TGGTGGTAGTGAGAGTTCCAACCCCATGGGTGCAGA...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS-3UTR CAA 90 bp TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTACCGCCTAGGGAACAGTaGCTTTGCATCCTTCCATCT +
Preference number: 5 (lower is better)
Translates to: WSVLNEGLGVGLYETQYLPPREQ*LCILPS
Trigger: AGATGGAAGGATGCAAAGCAACTGTTCCCTAGGCGG...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS-3UTR CAA 90 bp GGTGACAAAGATCTATCTTCATCCAGAACATCACTGGTTACTTCATCAATGGAGCCGCCTAGGGAACAGTaGCTTTGCATCCTTCCATCT +
Preference number: 5 (lower is better)
Translates to: GDKDLSSSRTSLVTSSMEPPREQ*LCILPS
Trigger: AGATGGAAGGATGCAAAGCAACTGTTCCCTAGGCGG...CTCCATTGATGAAGTAACCAGTGATGTTCTGGATGAAGATAGATCTTTGTCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
CDS-3UTR CAA 90 bp GGTGACAAAGATCTATCTTCATCCAGAACATCACTGGTTACTTCATCAATGGAGGCTCCTGAAAAGGATTaGCATTGGCCTCGCAGACAC +
Preference number: 5 (lower is better)
Translates to: GDKDLSSSRTSLVTSSMEAPEKD*HWPRRH
Trigger: GTGTCTGCGAGGCCAATGCAAATCCTTTTCAGGAGC...CTCCATTGATGAAGTAACCAGTGATGTTCTGGATGAAGATAGATCTTTGTCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146274.8
CDS-3UTR CAA 90 bp TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTATCCTCTTCACAACATTaGGCCTTCAACGCTCGTAAG +
Preference number: 5 (lower is better)
Translates to: WSVLNEGLGVGLYETQYLSSSQH*AFNARK
Trigger: CTTACGAGCGTTGAAGGCCAAATGTTGTGAAGAGGA...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068242.9
CDS-3UTR CAA 90 bp TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTAACAGTTAAGGATGGCTaGAGGTCGGTTCATCAATCG +
Preference number: 5 (lower is better)
Translates to: WSVLNEGLGVGLYETQYLTVKDG*RSVHQS
Trigger: CGATTGATGAACCGACCTCAAGCCATCCTTAACTGT...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS TCA 90 bp CCAACTACACGACCTCCCACAACAATGACTCGTACATCCCTTCCATaGGACTCTTTAATGTATTTCTGGAACAAATATGGAGCTTCATGC +
Preference number: 5 (lower is better)
Translates to: PTTRPPTTMTRTSLP*DSLMYFWNKYGASC
Trigger: GCATGAAGCTCCATATTTGTTCCAGAAATACATTAAAGAGTCTCATGGAAGGGATGTACGAGTCATTGTTGTGGGAGGTCGTGTAGTTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068242.9
ENSMUST00000146274.8
ENSMUST00000204731.2
CDS-3UTR CAA 90 bp AAGCATCTCCACTTCTTAACACATCTTCCAGACTCATCACTAGATTGTTTTATTCCGCCTAGGGAACAGTaGCTTTGCATCCTTCCATCT +
Preference number: 5 (lower is better)
Translates to: KHLHFLTHLPDSSLDCFIPPREQ*LCILPS
Trigger: AGATGGAAGGATGCAAAGCAACTGTTCCCTAGGCGG...AATAAAACAATCTAGTGATGAGTCTGGAAGATGTGTTAAGAAGTGGAGATGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068242.9
ENSMUST00000204731.2
CDS CAA 72 bp ACCACAGCCCGAAAGTCCAATTCCTCTTCACAACATTaGGCCTTCAACGCTCGTAAGATCTCTTTCTGTGGG +
Preference number: 6 (lower is better)
Translates to: TTARKSNSSSQH*AFNARKISFCG
Trigger: CCCACAGAAAGAGATCTTACGAGCGTTGAAGGCCAAATGTTGTGAAGAGGAATTGGACTTTCGGGCTGTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068242.9
ENSMUST00000204045.2
ENSMUST00000205114.2
CDS CCA 72 bp TTCTGGAACAAATATGGAGCTTCATGCCGAATAAGATaGCTTAGATCCGCTAAATGGTGTTTATCTCGTGCC +
Preference number: 6 (lower is better)
Translates to: FWNKYGASCRIR*LRSAKWCLSRA
Trigger: GGCACGAGATAAACACCATTTAGCGGATCTAAGCCATCTTATTCGGCATGAAGCTCCATATTTGTTCCAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068242.9
ENSMUST00000146274.8
ENSMUST00000204731.2
CDS TCA 72 bp CGACCTCCCACAACAATGACTCGTACATCCCTTCCATaGGACTCTTTAATGTATTTCTGGAACAAATATGGA +
Preference number: 6 (lower is better)
Translates to: RPPTTMTRTSLP*DSLMYFWNKYG
Trigger: TCCATATTTGTTCCAGAAATACATTAAAGAGTCTCATGGAAGGGATGTACGAGTCATTGTTGTGGGAGGTCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068242.9
ENSMUST00000146274.8
ENSMUST00000204731.2