Pregenerated sensors for RIMKLB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040649Ensembl transcript IDs: ENSMUST00000068242.9, ENSMUST00000146274.8, ENSMUST00000204045.2, ENSMUST00000204731.2, ENSMUST00000205114.2
Found 103 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
---|---|---|
3UTR GCA 90 bp | CAGGCTGGGCTGGGCACGGTCCGAGCCACTGCACTGAGCACGCACTaGGCAGCTGCGTTACTGGGGGAGGGGAAGTTTAGAAGGGCACTG | + |
Preference number: 1 (lower is better) Translates to: QAGLGTVRATALSTH*AAALLGEGKFRRAL Trigger: CAGTGCCCTTCTAAACTTCCCCTCCCCCAGTAACGCAGCTGCGCAGTGCGTGCTCAGTGCAGTGGCTCGGACCGTGCCCAGCCCAGCCTG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
3UTR GCA 90 bp | ATCTCTCTGCTGACAGCAGGCTGGGCTGGGCACGGTCCGAGCCACTaGACTGAGCACGCACTGCGCAGCTGCGTTACTGGGGGAGGGGAA | + |
Preference number: 1 (lower is better) Translates to: ISLLTAGWAGHGPSH*TEHALRSCVTGGGE Trigger: TTCCCCTCCCCCAGTAACGCAGCTGCGCAGTGCGTGCTCAGTGCAGTGGCTCGGACCGTGCCCAGCCCAGCCTGCTGTCAGCAGAGAGAT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
3UTR TCA 90 bp | TCTGCTGACAGCAGGCTGGGCTGGGCACGGTCCGAGCCACTGCACTaGGCACGCACTGCGCAGCTGCGTTACTGGGGGAGGGGAAGTTTA | + |
Preference number: 1 (lower is better) Translates to: SADSRLGWARSEPLH*ARTAQLRYWGRGSL Trigger: TAAACTTCCCCTCCCCCAGTAACGCAGCTGCGCAGTGCGTGCTCAGTGCAGTGGCTCGGACCGTGCCCAGCCCAGCCTGCTGTCAGCAGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
3UTR CCA 90 bp | TTCTCTGCTGCCACCTACCAGTTTATCTCTCTGCTGACAGCAGGCTaGGCTGGGCACGGTCCGAGCCACTGCACTGAGCACGCACTGCGC | + |
Preference number: 1 (lower is better) Translates to: FSAATYQFISLLTAG*AGHGPSHCTEHALR Trigger: GCGCAGTGCGTGCTCAGTGCAGTGGCTCGGACCGTGCCCAGCCCAGCCTGCTGTCAGCAGAGAGATAAACTGGTAGGTGGCAGCAGAGAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
3UTR CCA 90 bp | CACCTTCCCTACTTACAGTCTGCGTGTGAGTGTGGCACCCGAGGGTaGCTGATGAGAGCTGCACTTCAACACAGTGGCTGTGTGACCAGG | + |
Preference number: 1 (lower is better) Translates to: HLPYLQSACECGTRG*LMRAALQHSGCVTR Trigger: CCTGGTCACACAGCCACTGTGTTGAAGTGCAGCTCTCATCAGCCACCCTCGGGTGCCACACTCACACGCAGACTGTAAGTAGGGAAGGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
3UTR CCA 90 bp | GCCTTCCTGAGTCCAGTTTTCATCTGTGCTGCCCCTCGCTCCACTTaGTACGTCACATGCTATCTCTTCTCCTATGTAGGTTTAAGGTCA | + |
Preference number: 1 (lower is better) Translates to: AFLSPVFICAAPRST*YVTCYLFSYVGLRS Trigger: TGACCTTAAACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGGGCAGCACAGATGAAAACTGGACTCAGGAAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
3UTR TCA 90 bp | TTACTTCATCAATGGAGACAACATTCAGTAAAGAGGCAGCCTTCCTaGGTCCAGTTTTCATCTGTGCTGCCCCTCGCTCCACTTGGTACG | + |
Preference number: 1 (lower is better) Translates to: LLHQWRQHSVKRQPS*VQFSSVLPLAPLGT Trigger: CGTACCAAGTGGAGCGAGGGGCAGCACAGATGAAAACTGGACTCAGGAAGGCTGCCTCTTTACTGAATGTTGTCTCCATTGATGAAGTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
3UTR TCA 90 bp | CCTTTCACGTTCTCATGGCCTATGAGCAGGGTTTTCATACGTAACTaGAAAGGTTACCATGAGAGCCTGCCATTTCTCTCTGTGTCACCT | + |
Preference number: 1 (lower is better) Translates to: PFTFSWPMSRVFIRN*KGYHESLPFLSVSP Trigger: AGGTGACACAGAGAGAAATGGCAGGCTCTCATGGTAACCTTTTCAGTTACGTATGAAAACCCTGCTCATAGGCCATGAGAACGTGAAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR-3UTR CCA 90 bp | GCCCCTCGCTCCACTTGGTACGTCACATGCTATCTCTTCTCCTATGTAGGTTTACTGCTGACAGCAGGCTaGGCTGGGCACGGTCCGAGC | + |
Preference number: 2 (lower is better) Translates to: APRSTWYVTCYLFSYVGLLLTAG*AGHGPS Trigger: GCTCGGACCGTGCCCAGCCCAGCCTGCTGTCAGCAG...TAAACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
3UTR-3UTR TCA 90 bp | CCCTCGCTCCACTTGGTACGTCACATGCTATCTCTTCTCCTATGTAGGTTTAAGAGTTTATCTCTCTGCTaGCAGCAGGCTGGGCTGGGC | + |
Preference number: 2 (lower is better) Translates to: PSLHLVRHMLSLLLCRFKSLSLC*QQAGLG Trigger: GCCCAGCCCAGCCTGCTGTCAGCAGAGAGATAAACT...CTTAAACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
3UTR-3UTR TCA 90 bp | GCCCCTCGCTCCACTTGGTACGTCACATGCTATCTCTTCTCCTATGTAGGTTTAAGTTTAGAAGGGCACTaGCCCCAAAGCTCCCAAAAC | + |
Preference number: 2 (lower is better) Translates to: APRSTWYVTCYLFSYVGLSLEGH*PQSSQN Trigger: GTTTTGGGAGCTTTGGGGTCAGTGCCCTTCTAAACT...TAAACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
3UTR-3UTR CCA 90 bp | CTGAATGCAACAAGATATAAAGAACCAATTCCTTCTTATTCTGCATTCTTCCCCGACAGCAGGCTGGGCTaGGCACGGTCCGAGCCACTG | + |
Preference number: 2 (lower is better) Translates to: LNATRYKEPIPSYSAFFPDSRLG*ARSEPL Trigger: CAGTGGCTCGGACCGTGCCCAGCCCAGCCTGCTGTC...GGGGAAGAATGCAGAATAAGAAGGAATTGGTTCTTTATATCTTGTTGCATTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
3UTR-3UTR TCA 90 bp | GAGGGGATCGTGTCTCACCAGCCAAATAGCCCACAAACCTTCTCAAAAACAGCGAGGGAAAAATTATGTTaGCCCCTGAAGCATCTCCAC | + |
Preference number: 2 (lower is better) Translates to: EGIVSHQPNSPQTFSKTAREKLC*PLKHLH Trigger: GTGGAGATGCTTCAGGGGTCAACATAATTTTTCCCT...CGCTGTTTTTGAGAAGGTTTGTGGGCTATTTGGCTGGTGAGACACGATCCCCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
3UTR-3UTR TCA 90 bp | AGAGCATTTGGGTTTCCACTCTTCTCCTTCTTGGATGAGATGACTGATGGTCAGCTGTGTGACCAGGAGTaGAACTGCTGGGAAAGCATC | + |
Preference number: 2 (lower is better) Translates to: RAFGFPLFSFLDEMTDGQLCDQE*NCWESI Trigger: GATGCTTTCCCAGCAGTTTCACTCCTGGTCACACAG...CTGACCATCAGTCATCTCATCCAAGAAGGAGAAGAGTGGAAACCCAAATGCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
3UTR-3UTR TCA 90 bp | GAGGGGATCGTGTCTCACCAGCCAAATAGCCCACAAACCTTCTCAAAAACAGCGGCCTTGAAGTCTCCTTaGAGTAGTGTCCAAGAAATT | + |
Preference number: 2 (lower is better) Translates to: EGIVSHQPNSPQTFSKTAALKSP*SSVQEI Trigger: AATTTCTTGGACACTACTTCAAGGAGACTTCAAGGC...CGCTGTTTTTGAGAAGGTTTGTGGGCTATTTGGCTGGTGAGACACGATCCCCTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
3UTR-3UTR TCA 90 bp | TGCCCCTCGCTCCACTTGGTACGTCACATGCTATCTCTTCTCCTATGTAGGTTTCAACAGCCATCAGTCTaGAGAATTCCTTTCTCTGCT | + |
Preference number: 2 (lower is better) Translates to: CPSLHLVRHMLSLLLCRFQQPSV*RIPFSA Trigger: AGCAGAGAAAGGAATTCTTCAGACTGATGGCTGTTG...AAACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
3UTR-3UTR CCA 90 bp | AGAGCATTTGGGTTTCCACTCTTCTCCTTCTTGGATGAGATGACTGATGGTCAGGTTAAAGGGAAGGTGTaGGGTGCAGGGAGACAGTTT | + |
Preference number: 2 (lower is better) Translates to: RAFGFPLFSFLDEMTDGQVKGKV*GAGRQF Trigger: AAACTGTCTCCCTGCACCCCACACCTTCCCTTTAAC...CTGACCATCAGTCATCTCATCCAAGAAGGAGAAGAGTGGAAACCCAAATGCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
3UTR-3UTR GCA 90 bp | TGCCCCTCGCTCCACTTGGTACGTCACATGCTATCTCTTCTCCTATGTAGGTTTAATTCCTTTCTCTGCTaGCACCTACCAGTTTATCTC | + |
Preference number: 2 (lower is better) Translates to: CPSLHLVRHMLSLLLCRFNSFLC*HLPVYL Trigger: GAGATAAACTGGTAGGTGGCAGCAGAGAAAGGAATT...AAACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
3UTR-3UTR CCA 90 bp | AGAGCATTTGGGTTTCCACTCTTCTCCTTCTTGGATGAGATGACTGATGGTCAGAACAGCATTGCAAGTTaGTTAAAGGGAAGGTGTGGG | + |
Preference number: 2 (lower is better) Translates to: RAFGFPLFSFLDEMTDGQNSIAS*LKGRCG Trigger: CCCACACCTTCCCTTTAACCAACTTGCAATGCTGTT...CTGACCATCAGTCATCTCATCCAAGAAGGAGAAGAGTGGAAACCCAAATGCTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
3UTR-3UTR GCA 90 bp | GAGGGGATCGTGTCTCACCAGCCAAATAGCCCACAAACCTTCTCAAAAACAGCGTTGTATACCAGACATTaGAATACTGTTCATTTCCCT | + |
Preference number: 2 (lower is better) Translates to: EGIVSHQPNSPQTFSKTALYTRH*NTVHFP Trigger: AGGGAAATGAACAGTATTGCAATGTCTGGTATACAA...CGCTGTTTTTGAGAAGGTTTGTGGGCTATTTGGCTGGTGAGACACGATCCCCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
3UTR-3UTR TCA 90 bp | CATAATGTAAGTGGCAACCAGATGGTCTTAGGATCTGATTCCACGGTTGTTCATGCACCCTGCAAAATATaGTCATTGAGCAAAGTACCA | + |
Preference number: 2 (lower is better) Translates to: HNVSGNQMVLGSDSTVVHAPCKI*SLSKVP Trigger: TGGTACTTTGCTCAATGATCATATTTTGCAGGGTGC...ATGAACAACCGTGGAATCAGATCCTAAGACCATCTGGTTGCCACTTACATTATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
3UTR-3UTR GCA 90 bp | AGAGCATTTGGGTTTCCACTCTTCTCCTTCTTGGATGAGATGACTGATGGTCAGAAGGCTCATATTATATaGAGTTTGGGGCTTTCATCA | + |
Preference number: 2 (lower is better) Translates to: RAFGFPLFSFLDEMTDGQKAHII*SLGLSS Trigger: TGATGAAAGCCCCAAACTGCATATAATATGAGCCTT...CTGACCATCAGTCATCTCATCCAAGAAGGAGAAGAGTGGAAACCCAAATGCTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
3UTR-3UTR GCA 90 bp | TGCAGTCATAGAACAAGGGTGTTACCAGCATGTATTAAAAATGCAACATTAACAAGGGAAGGTGTGGGGTaGAGGGAGACAGTTTTACAA | + |
Preference number: 2 (lower is better) Translates to: CSHRTRVLPACIKNATLTREGVG*RETVLQ Trigger: TTGTAAAACTGTCTCCCTGCACCCCACACCTTCCCT...TGTTAATGTTGCATTTTTAATACATGCTGGTAACACCCTTGTTCTATGACTGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR-3UTR GCA 90 bp | AAGCATCTCCACTTCTTAACACATCTTCCAGACTCATCACTAGATTGTTTTATTAGGGAAGGTGTGGGGTaGAGGGAGACAGTTTTACAA | + |
Preference number: 2 (lower is better) Translates to: KHLHFLTHLPDSSLDCFIREGVG*RETVLQ Trigger: TTGTAAAACTGTCTCCCTGCACCCCACACCTTCCCT...AATAAAACAATCTAGTGATGAGTCTGGAAGATGTGTTAAGAAGTGGAGATGCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR-3UTR CCA 90 bp | AAGCATCTCCACTTCTTAACACATCTTCCAGACTCATCACTAGATTGTTTTATTGTTAAAGGGAAGGTGTaGGGTGCAGGGAGACAGTTT | + |
Preference number: 2 (lower is better) Translates to: KHLHFLTHLPDSSLDCFIVKGKV*GAGRQF Trigger: AAACTGTCTCCCTGCACCCCACACCTTCCCTTTAAC...AATAAAACAATCTAGTGATGAGTCTGGAAGATGTGTTAAGAAGTGGAGATGCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR-3UTR TCA 90 bp | CATAATGTAAGTGGCAACCAGATGGTCTTAGGATCTGATTCCACGGTTGTTCATGTTTTATTATTGCCTTaGAGTCTCCTTGAAGTAGTG | + |
Preference number: 2 (lower is better) Translates to: HNVSGNQMVLGSDSTVVHVLLLP*SLLEVV Trigger: CACTACTTCAAGGAGACTTCAAGGCAATAATAAAAC...ATGAACAACCGTGGAATCAGATCCTAAGACCATCTGGTTGCCACTTACATTATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
3UTR-3UTR GCA 90 bp | CATAATGTAAGTGGCAACCAGATGGTCTTAGGATCTGATTCCACGGTTGTTCATACATGTACACTTGCATaGGACATATATACTCCTTTC | + |
Preference number: 2 (lower is better) Translates to: HNVSGNQMVLGSDSTVVHTCTLA*DIYTPF Trigger: GAAAGGAGTATATATGTCGCATGCAAGTGTACATGT...ATGAACAACCGTGGAATCAGATCCTAAGACCATCTGGTTGCCACTTACATTATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
3UTR-3UTR GCA 90 bp | TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTAACATGTACACTTGCATaGGACATATATACTCCTTTC | + |
Preference number: 2 (lower is better) Translates to: WSVLNEGLGVGLYETQYLTCTLA*DIYTPF Trigger: GAAAGGAGTATATATGTCGCATGCAAGTGTACATGT...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR-3UTR GCA 90 bp | CATAATGTAAGTGGCAACCAGATGGTCTTAGGATCTGATTCCACGGTTGTTCATAACTGCTTCCCATCATaGCATTCACTAGAATCTATT | + |
Preference number: 2 (lower is better) Translates to: HNVSGNQMVLGSDSTVVHNCFPS*HSLESI Trigger: AATAGATTCTAGTGAATGGCATGATGGGAAGCAGTT...ATGAACAACCGTGGAATCAGATCCTAAGACCATCTGGTTGCCACTTACATTATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
3UTR-3UTR GCA 90 bp | TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTAAACTGCTTCCCATCATaGCATTCACTAGAATCTATT | + |
Preference number: 2 (lower is better) Translates to: WSVLNEGLGVGLYETQYLNCFPS*HSLESI Trigger: AATAGATTCTAGTGAATGGCATGATGGGAAGCAGTT...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR-3UTR GCA 90 bp | GGTGACAAAGATCTATCTTCATCCAGAACATCACTGGTTACTTCATCAATGGAGACTTGGTACGTCACATaGTATCTCTTCTCCTATGTA | + |
Preference number: 2 (lower is better) Translates to: GDKDLSSSRTSLVTSSMETWYVT*YLFSYV Trigger: TACATAGGAGAAGAGATAGCATGTGACGTACCAAGT...CTCCATTGATGAAGTAACCAGTGATGTTCTGGATGAAGATAGATCTTTGTCACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
3UTR-3UTR CCA 90 bp | AAAAGCTTAAGGAACATTTACTTTCCTGTTGTCTTTAGGGGAGAATCTCTATACAACAGCATTGCAAGTTaGTTAAAGGGAAGGTGTGGG | + |
Preference number: 2 (lower is better) Translates to: KSLRNIYFPVVFRGESLYNSIAS*LKGRCG Trigger: CCCACACCTTCCCTTTAACCAACTTGCAATGCTGTT...GTATAGAGATTCTCCCCTAAAGACAACAGGAAAGTAAATGTTCCTTAAGCTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR CAA 90 bp | GTTTTGAGTGGTGTCTTGTTAACCAAAAGTAGCATATTGTTTACTTaGGCCATTGTTAAAGATGCAGTCATAGAACAAGGGTGTTACCAG | + |
Preference number: 2 (lower is better) Translates to: VLSGVLLTKSSILFT*AIVKDAVIEQGCYQ Trigger: CTGGTAACACCCTTGTTCTATGACTGCATCTTTAACAATGGCCAAAGTAAACAATATGCTACTTTTGGTTAACAAGACACCACTCAAAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR-3UTR TCA 90 bp | TGCAGTCATAGAACAAGGGTGTTACCAGCATGTATTAAAAATGCAACATTAACATGTAACTCAACCTTCTaGACATTCTCCATGAACAGC | + |
Preference number: 2 (lower is better) Translates to: CSHRTRVLPACIKNATLTCNSTF*TFSMNS Trigger: GCTGTTCATGGAGAATGTTCAGAAGGTTGAGTTACA...TGTTAATGTTGCATTTTTAATACATGCTGGTAACACCCTTGTTCTATGACTGCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR-3UTR TCA 90 bp | AAAAGCTTAAGGAACATTTACTTTCCTGTTGTCTTTAGGGGAGAATCTCTATACTGTAACTCAACCTTCTaGACATTCTCCATGAACAGC | + |
Preference number: 2 (lower is better) Translates to: KSLRNIYFPVVFRGESLYCNSTF*TFSMNS Trigger: GCTGTTCATGGAGAATGTTCAGAAGGTTGAGTTACA...GTATAGAGATTCTCCCCTAAAGACAACAGGAAAGTAAATGTTCCTTAAGCTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR-3UTR TCA 90 bp | ACAGGTACTATTCTAGTTGTCAATGAAACCTTTCGCTCCGCTTTAATACTTAATGCCTTGAAGTCTCCTTaGAGTAGTGTCCAAGAAATT | + |
Preference number: 2 (lower is better) Translates to: TGTILVVNETFRSALILNALKSP*SSVQEI Trigger: AATTTCTTGGACACTACTTCAAGGAGACTTCAAGGC...ATTAAGTATTAAAGCGGAGCGAAAGGTTTCATTGACAACTAGAATAGTACCTGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR TCA 72 bp | AGCAGGCTGGGCTGGGCACGGTCCGAGCCACTGCACTaGGCACGCACTGCGCAGCTGCGTTACTGGGGGAGG | + |
Preference number: 3 (lower is better) Translates to: SRLGWARSEPLH*ARTAQLRYWGR Trigger: CCTCCCCCAGTAACGCAGCTGCGCAGTGCGTGCTCAGTGCAGTGGCTCGGACCGTGCCCAGCCCAGCCTGCT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
3UTR GCA 72 bp | CTGACAGCAGGCTGGGCTGGGCACGGTCCGAGCCACTaGACTGAGCACGCACTGCGCAGCTGCGTTACTGGG | + |
Preference number: 3 (lower is better) Translates to: LTAGWAGHGPSH*TEHALRSCVTG Trigger: CCCAGTAACGCAGCTGCGCAGTGCGTGCTCAGTGCAGTGGCTCGGACCGTGCCCAGCCCAGCCTGCTGTCAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
3UTR TCA 72 bp | CTTTCTCTGCTGCCACCTACCAGTTTATCTCTCTGCTaGCAGCAGGCTGGGCTGGGCACGGTCCGAGCCACT | + |
Preference number: 3 (lower is better) Translates to: LSLLPPTSLSLC*QQAGLGTVRAT Trigger: AGTGGCTCGGACCGTGCCCAGCCCAGCCTGCTGTCAGCAGAGAGATAAACTGGTAGGTGGCAGCAGAGAAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
3UTR CCA 72 bp | TACTTACAGTCTGCGTGTGAGTGTGGCACCCGAGGGTaGCTGATGAGAGCTGCACTTCAACACAGTGGCTGT | + |
Preference number: 3 (lower is better) Translates to: YLQSACECGTRG*LMRAALQHSGC Trigger: ACAGCCACTGTGTTGAAGTGCAGCTCTCATCAGCCACCCTCGGGTGCCACACTCACACGCAGACTGTAAGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
3UTR GCA 72 bp | AGAGGCAGCCTTCCTGAGTCCAGTTTTCATCTGTGCTaGCCCTCGCTCCACTTGGTACGTCACATGCTATCT | + |
Preference number: 3 (lower is better) Translates to: RGSLPESSFHLC*PSLHLVRHMLS Trigger: AGATAGCATGTGACGTACCAAGTGGAGCGAGGGGCAGCACAGATGAAAACTGGACTCAGGAAGGCTGCCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
3UTR TCA 72 bp | AGCTGCACTTCAACACAGTGGCTGTGTGACCAGGAGTaGAACTGCTGGGAAAGCATCTTAGAGCAATGCTTG | + |
Preference number: 3 (lower is better) Translates to: SCTSTQWLCDQE*NCWESILEQCL Trigger: CAAGCATTGCTCTAAGATGCTTTCCCAGCAGTTTCACTCCTGGTCACACAGCCACTGTGTTGAAGTGCAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
3UTR CCA 72 bp | AGTCCAGTTTTCATCTGTGCTGCCCCTCGCTCCACTTaGTACGTCACATGCTATCTCTTCTCCTATGTAGGT | + |
Preference number: 3 (lower is better) Translates to: SPVFICAAPRST*YVTCYLFSYVG Trigger: ACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGGGCAGCACAGATGAAAACTGGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
3UTR-3UTR CAA 90 bp | TCATACGTAACTGAAAAGGTTACCATGAGAGCCTGCCATTTCTCTCTGTGTCACGAACAGCATTGCAAGTaGGTTAAAGGGAAGGTGTGG | + |
Preference number: 3 (lower is better) Translates to: SYVTEKVTMRACHFSLCHEQHCK*VKGKVW Trigger: CCACACCTTCCCTTTAACCAACTTGCAATGCTGTTC...GTGACACAGAGAGAAATGGCAGGCTCTCATGGTAACCTTTTCAGTTACGTATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR TCA 72 bp | TTCTCATGGCCTATGAGCAGGGTTTTCATACGTAACTaGAAAGGTTACCATGAGAGCCTGCCATTTCTCTCT | + |
Preference number: 3 (lower is better) Translates to: FSWPMSRVFIRN*KGYHESLPFLS Trigger: AGAGAGAAATGGCAGGCTCTCATGGTAACCTTTTCAGTTACGTATGAAAACCCTGCTCATAGGCCATGAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR TCA 72 bp | CCTAAAGATAGACTCCTTGTGAGTCTTGAGGTGAGTTaGGAAGAGTGCACCGGTTACAGGTACTATTCTAGT | + |
Preference number: 3 (lower is better) Translates to: PKDRLLVSLEVS*EECTGYRYYSS Trigger: ACTAGAATAGTACCTGTAACCGGTGCACTCTTCTCAACTCACCTCAAGACTCACAAGGAGTCTATCTTTAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR GCA 72 bp | TCCTGTGCAAATCAGAACGTGCAGATGCAATTAAAGTaGCCTAAAGATAGACTCCTTGTGAGTCTTGAGGTG | + |
Preference number: 3 (lower is better) Translates to: SCANQNVQMQLK*PKDRLLVSLEV Trigger: CACCTCAAGACTCACAAGGAGTCTATCTTTAGGGCACTTTAATTGCATCTGCACGTTCTGATTTGCACAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR GCA 72 bp | TTTTCATACGTAACTGAAAAGGTTACCATGAGAGCCTaGCATTTCTCTCTGTGTCACCTAGTATTCCTCTGT | + |
Preference number: 3 (lower is better) Translates to: FSYVTEKVTMRA*HFSLCHLVFLC Trigger: ACAGAGGAATACTAGGTGACACAGAGAGAAATGGCAGGCTCTCATGGTAACCTTTTCAGTTACGTATGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR-3UTR CAA 90 bp | ACAGGTACTATTCTAGTTGTCAATGAAACCTTTCGCTCCGCTTTAATACTTAATGAACAGCATTGCAAGTaGGTTAAAGGGAAGGTGTGG | + |
Preference number: 3 (lower is better) Translates to: TGTILVVNETFRSALILNEQHCK*VKGKVW Trigger: CCACACCTTCCCTTTAACCAACTTGCAATGCTGTTC...ATTAAGTATTAAAGCGGAGCGAAAGGTTTCATTGACAACTAGAATAGTACCTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR-3UTR CAA 90 bp | TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTACATGCTACTAAGTACTaGGATCAAAACCATTCTACA | + |
Preference number: 3 (lower is better) Translates to: WSVLNEGLGVGLYETQYLHATKY*DQNHST Trigger: TGTAGAATGGTTTTGATCCAAGTACTTAGTAGCATG...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR-3UTR CAA 90 bp | TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTATCCTCTTTACAAATCTaGAAACTGAAGTCATGCTAC | + |
Preference number: 3 (lower is better) Translates to: WSVLNEGLGVGLYETQYLSSLQI*KLKSCY Trigger: GTAGCATGACTTCAGTTTCAAGATTTGTAAAGAGGA...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR GCA 72 bp | CACGGTTGTTCATTTATTTGTCTATACCAAATACCATaGACCCTGCAAAATATGATCATTGAGCAAAGTACC | + |
Preference number: 3 (lower is better) Translates to: HGCSFICLYQIP*TLQNMIIEQST Trigger: GGTACTTTGCTCAATGATCATATTTTGCAGGGTGCATGGTATTTGGTATAGACAAATAAATGAACAACCGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
3UTR CCA 72 bp | AAGGTGACAAAGATCTATCTTCATCCAGAACATCACTaGTTACTTCATCAATGGAGACAACATTCAGTAAAG | + |
Preference number: 3 (lower is better) Translates to: KVTKIYLHPEHH*LLHQWRQHSVK Trigger: CTTTACTGAATGTTGTCTCCATTGATGAAGTAACCAGTGATGTTCTGGATGAAGATAGATCTTTGTCACCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
3UTR-3UTR CAA 90 bp | ACAGGTACTATTCTAGTTGTCAATGAAACCTTTCGCTCCGCTTTAATACTTAATTCCTCTTTACAAATCTaGAAACTGAAGTCATGCTAC | + |
Preference number: 3 (lower is better) Translates to: TGTILVVNETFRSALILNSSLQI*KLKSCY Trigger: GTAGCATGACTTCAGTTTCAAGATTTGTAAAGAGGA...ATTAAGTATTAAAGCGGAGCGAAAGGTTTCATTGACAACTAGAATAGTACCTGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR-3UTR CAA 90 bp | TGCAGTCATAGAACAAGGGTGTTACCAGCATGTATTAAAAATGCAACATTAACATTTGTATACCAGACATaGCAATACTGTTCATTTCCC | + |
Preference number: 3 (lower is better) Translates to: CSHRTRVLPACIKNATLTFVYQT*QYCSFP Trigger: GGGAAATGAACAGTATTGCAATGTCTGGTATACAAA...TGTTAATGTTGCATTTTTAATACATGCTGGTAACACCCTTGTTCTATGACTGCA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR TCA 72 bp | TTTGTCTATACCAAATACCATGCACCCTGCAAAATATaGTCATTGAGCAAAGTACCAAGTACTTTTATTCTG | + |
Preference number: 3 (lower is better) Translates to: FVYTKYHAPCKI*SLSKVPSTFIL Trigger: CAGAATAAAAGTACTTGGTACTTTGCTCAATGATCATATTTTGCAGGGTGCATGGTATTTGGTATAGACAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
CDS-3UTR TCA 90 bp | TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTAGGGACATGCGCCGGGTaGGCCGGCCAGCGGGCAGAA | + |
Preference number: 4 (lower is better) Translates to: WSVLNEGLGVGLYETQYLGTCAG*AGQRAE Trigger: TTCTGCCCGCTGGCCGGCTCACCCGGCGCATGTCCC...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS-3UTR TCA 90 bp | TCATACGTAACTGAAAAGGTTACCATGAGAGCCTGCCATTTCTCTCTGTGTCACCCCCTGGGAGCTTGGTaGGCATCTCTCGCTCGGTGG | + |
Preference number: 4 (lower is better) Translates to: SYVTEKVTMRACHFSLCHPLGAW*ASLARW Trigger: CCACCGAGCGAGAGATGCTCACCAAGCTCCCAGGGG...GTGACACAGAGAGAAATGGCAGGCTCTCATGGTAACCTTTTCAGTTACGTATGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS-3UTR TCA 90 bp | TCATCTGTGCTGCCCCTCGCTCCACTTGGTACGTCACATGCTATCTCTTCTCCTCAGTTAAGGATGGCTTaGGGTCGGTTCATCAATCGG | + |
Preference number: 4 (lower is better) Translates to: SSVLPLAPLGTSHAISSPQLRMA*GRFINR Trigger: CCGATTGATGAACCGACCTCAAGCCATCCTTAACTG...AGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGGGCAGCACAGATGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
CDS-3UTR TCA 90 bp | AAAAGCTTAAGGAACATTTACTTTCCTGTTGTCTTTAGGGGAGAATCTCTATACGGGACATGCGCCGGGTaGGCCGGCCAGCGGGCAGAA | + |
Preference number: 4 (lower is better) Translates to: KSLRNIYFPVVFRGESLYGTCAG*AGQRAE Trigger: TTCTGCCCGCTGGCCGGCTCACCCGGCGCATGTCCC...GTATAGAGATTCTCCCCTAAAGACAACAGGAAAGTAAATGTTCCTTAAGCTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS-3UTR GCA 90 bp | TGCCCCTCGCTCCACTTGGTACGTCACATGCTATCTCTTCTCCTATGTAGGTTTAACAGCGTAGCATGGTaGCAACTACACGACCTCCCA | + |
Preference number: 4 (lower is better) Translates to: CPSLHLVRHMLSLLLCRFNSVAW*QLHDLP Trigger: TGGGAGGTCGTGTAGTTGGCACCATGCTACGCTGTT...AAACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
CDS-3UTR GCA 90 bp | GAGGGGATCGTGTCTCACCAGCCAAATAGCCCACAAACCTTCTCAAAAACAGCGCGCCTAGGGAACAGTTaGTTTGCATCCTTCCATCTG | + |
Preference number: 4 (lower is better) Translates to: EGIVSHQPNSPQTFSKTARLGNS*FASFHL Trigger: CAGATGGAAGGATGCAAAGCAACTGTTCCCTAGGCG...CGCTGTTTTTGAGAAGGTTTGTGGGCTATTTGGCTGGTGAGACACGATCCCCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
CDS-3UTR TCA 90 bp | ACAGGTACTATTCTAGTTGTCAATGAAACCTTTCGCTCCGCTTTAATACTTAATCCCCTGGGAGCTTGGTaGGCATCTCTCGCTCGGTGG | + |
Preference number: 4 (lower is better) Translates to: TGTILVVNETFRSALILNPLGAW*ASLARW Trigger: CCACCGAGCGAGAGATGCTCACCAAGCTCCCAGGGG...ATTAAGTATTAAAGCGGAGCGAAAGGTTTCATTGACAACTAGAATAGTACCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS-3UTR CCA 90 bp | TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTAGCATCTCTCGCTCGGTaGTGCTTTCAGGGTCGCTAT | + |
Preference number: 4 (lower is better) Translates to: WSVLNEGLGVGLYETQYLASLAR*CFQGRY Trigger: ATAGCGACCCTGAAAGCACCACCGAGCGAGAGATGC...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS-3UTR GCA 90 bp | TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTATCTCTCGCTCGGTGGTaGTTTCAGGGTCGCTATCAA | + |
Preference number: 4 (lower is better) Translates to: WSVLNEGLGVGLYETQYLSLARW*FQGRYQ Trigger: TTGATAGCGACCCTGAAAGCACCACCGAGCGAGAGA...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS-3UTR TCA 90 bp | AGAGCATTTGGGTTTCCACTCTTCTCCTTCTTGGATGAGATGACTGATGGTCAGACAGCTTTGCCTCTATaGCCCCTTGTATTCTTCACT | + |
Preference number: 4 (lower is better) Translates to: RAFGFPLFSFLDEMTDGQTALPL*PLVFFT Trigger: AGTGAAGAATACAAGGGGTCATAGAGGCAAAGCTGT...CTGACCATCAGTCATCTCATCCAAGAAGGAGAAGAGTGGAAACCCAAATGCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
CDS-3UTR TCA 90 bp | CCTCGCTCCACTTGGTACGTCACATGCTATCTCTTCTCCTATGTAGGTTTAAGGGTATATTTTGGCTCCTaGAAAGGATTTGCATTGGCC | + |
Preference number: 4 (lower is better) Translates to: PRSTWYVTCYLFSYVGLRVYFGS*KGFALA Trigger: GGCCAATGCAAATCCTTTTCAGGAGCCAAAATATAC...CCTTAAACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
CDS-3UTR GCA 90 bp | ACATGCTATCTCTTCTCCTATGTAGGTTTAAGGTCAACAGCCATCAGTCTGAAGCGCCTAGGGAACAGTTaGTTTGCATCCTTCCATCTG | + |
Preference number: 4 (lower is better) Translates to: TCYLFSYVGLRSTAISLKRLGNS*FASFHL Trigger: CAGATGGAAGGATGCAAAGCAACTGTTCCCTAGGCG...CTTCAGACTGATGGCTGTTGACCTTAAACCTACATAGGAGAAGAGATAGCATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
CDS-3UTR GCA 90 bp | GTTACTTCATCAATGGAGACAACATTCAGTAAAGAGGCAGCCTTCCTGAGTCCACTCCTGAAAAGGATTTaGATTGGCCTCGCAGACACA | + |
Preference number: 4 (lower is better) Translates to: VTSSMETTFSKEAAFLSPLLKRI*IGLADT Trigger: TGTGTCTGCGAGGCCAATGCAAATCCTTTTCAGGAG...TGGACTCAGGAAGGCTGCCTCTTTACTGAATGTTGTCTCCATTGATGAAGTAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
CDS-3UTR CCA 90 bp | ACATGCTATCTCTTCTCCTATGTAGGTTTAAGGTCAACAGCCATCAGTCTGAAGGGAAGAGGCACACCATaGCCAGCTAACTCTTGGAAT | + |
Preference number: 4 (lower is better) Translates to: TCYLFSYVGLRSTAISLKGRGTP*PANSWN Trigger: ATTCCAAGAGTTAGCTGGCCATGGTGTGCCTCTTCC...CTTCAGACTGATGGCTGTTGACCTTAAACCTACATAGGAGAAGAGATAGCATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
CDS-3UTR CCA 90 bp | GAGGGGATCGTGTCTCACCAGCCAAATAGCCCACAAACCTTCTCAAAAACAGCGTTTCTGGAACAAATATaGAGCTTCATGCCGAATAAG | + |
Preference number: 4 (lower is better) Translates to: EGIVSHQPNSPQTFSKTAFLEQI*SFMPNK Trigger: CTTATTCGGCATGAAGCTCCATATTTGTTCCAGAAA...CGCTGTTTTTGAGAAGGTTTGTGGGCTATTTGGCTGGTGAGACACGATCCCCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
CDS-3UTR TCA 90 bp | GTCACATGCTATCTCTTCTCCTATGTAGGTTTAAGGTCAACAGCCATCAGTCTGACAGCTTTGCCTCTATaGCCCCTTGTATTCTTCACT | + |
Preference number: 4 (lower is better) Translates to: VTCYLFSYVGLRSTAISLTALPL*PLVFFT Trigger: AGTGAAGAATACAAGGGGTCATAGAGGCAAAGCTGT...CAGACTGATGGCTGTTGACCTTAAACCTACATAGGAGAAGAGATAGCATGTGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
CDS-3UTR TCA 90 bp | TCATACGTAACTGAAAAGGTTACCATGAGAGCCTGCCATTTCTCTCTGTGTCACACAGCTTTGCCTCTATaGCCCCTTGTATTCTTCACT | + |
Preference number: 4 (lower is better) Translates to: SYVTEKVTMRACHFSLCHTALPL*PLVFFT Trigger: AGTGAAGAATACAAGGGGTCATAGAGGCAAAGCTGT...GTGACACAGAGAGAAATGGCAGGCTCTCATGGTAACCTTTTCAGTTACGTATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS-3UTR CCA 90 bp | ACATGCTATCTCTTCTCCTATGTAGGTTTAAGGTCAACAGCCATCAGTCTGAAGGAAAAGGATTTGCATTaGCCTCGCAGACACAGAAGG | + |
Preference number: 4 (lower is better) Translates to: TCYLFSYVGLRSTAISLKEKDLH*PRRHRR Trigger: CCTTCTGTGTCTGCGAGGCCAATGCAAATCCTTTTC...CTTCAGACTGATGGCTGTTGACCTTAAACCTACATAGGAGAAGAGATAGCATGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
CDS-3UTR GCA 90 bp | GTTACTTCATCAATGGAGACAACATTCAGTAAAGAGGCAGCCTTCCTGAGTCCAGAACTCCAGCACTTCTaGTTCATCAATCATCTTAGC | + |
Preference number: 4 (lower is better) Translates to: VTSSMETTFSKEAAFLSPELQHF*FINHLS Trigger: GCTAAGATGATTGATGAAGCAGAAGTGCTGGAGTTC...TGGACTCAGGAAGGCTGCCTCTTTACTGAATGTTGTCTCCATTGATGAAGTAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
CDS-3UTR CCA 90 bp | CTGAATGCAACAAGATATAAAGAACCAATTCCTTCTTATTCTGCATTCTTCCCCGCATCCTTCCATCTGTaGAACAGCGTAGCATGGTGC | + |
Preference number: 4 (lower is better) Translates to: LNATRYKEPIPSYSAFFPASFHL*NSVAWC Trigger: GCACCATGCTACGCTGTTCCACAGATGGAAGGATGC...GGGGAAGAATGCAGAATAAGAAGGAATTGGTTCTTTATATCTTGTTGCATTCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
CDS-3UTR CCA 90 bp | TGCAGTCATAGAACAAGGGTGTTACCAGCATGTATTAAAAATGCAACATTAACAGCATCTCTCGCTCGGTaGTGCTTTCAGGGTCGCTAT | + |
Preference number: 4 (lower is better) Translates to: CSHRTRVLPACIKNATLTASLAR*CFQGRY Trigger: ATAGCGACCCTGAAAGCACCACCGAGCGAGAGATGC...TGTTAATGTTGCATTTTTAATACATGCTGGTAACACCCTTGTTCTATGACTGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS-3UTR TCA 90 bp | ACAGGTACTATTCTAGTTGTCAATGAAACCTTTCGCTCCGCTTTAATACTTAATGTGGGTAGTCTTCCCTaGTGCGACGATCTGTCAAGA | + |
Preference number: 4 (lower is better) Translates to: TGTILVVNETFRSALILNVGSLP*CDDLSR Trigger: TCTTGACAGATCGTCGCATCAGGGAAGACTACCCAC...ATTAAGTATTAAAGCGGAGCGAAAGGTTTCATTGACAACTAGAATAGTACCTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
CDS-3UTR GCA 90 bp | CATAATGTAAGTGGCAACCAGATGGTCTTAGGATCTGATTCCACGGTTGTTCATGAACTCCAGCACTTCTaGTTCATCAATCATCTTAGC | + |
Preference number: 4 (lower is better) Translates to: HNVSGNQMVLGSDSTVVHELQHF*FINHLS Trigger: GCTAAGATGATTGATGAAGCAGAAGTGCTGGAGTTC...ATGAACAACCGTGGAATCAGATCCTAAGACCATCTGGTTGCCACTTACATTATG 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
CDS-3UTR GCA 90 bp | AAAAGCTTAAGGAACATTTACTTTCCTGTTGTCTTTAGGGGAGAATCTCTATACAACAGCGTAGCATGGTaGCAACTACACGACCTCCCA | + |
Preference number: 4 (lower is better) Translates to: KSLRNIYFPVVFRGESLYNSVAW*QLHDLP Trigger: TGGGAGGTCGTGTAGTTGGCACCATGCTACGCTGTT...GTATAGAGATTCTCCCCTAAAGACAACAGGAAAGTAAATGTTCCTTAAGCTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS-3UTR CCA 90 bp | TGCAGTCATAGAACAAGGGTGTTACCAGCATGTATTAAAAATGCAACATTAACAGCATCCTTCCATCTGTaGAACAGCGTAGCATGGTGC | + |
Preference number: 4 (lower is better) Translates to: CSHRTRVLPACIKNATLTASFHL*NSVAWC Trigger: GCACCATGCTACGCTGTTCCACAGATGGAAGGATGC...TGTTAATGTTGCATTTTTAATACATGCTGGTAACACCCTTGTTCTATGACTGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS-3UTR TCA 90 bp | ACAGGTACTATTCTAGTTGTCAATGAAACCTTTCGCTCCGCTTTAATACTTAATCAGTTAAGGATGGCTTaGGGTCGGTTCATCAATCGG | + |
Preference number: 4 (lower is better) Translates to: TGTILVVNETFRSALILNQLRMA*GRFINR Trigger: CCGATTGATGAACCGACCTCAAGCCATCCTTAACTG...ATTAAGTATTAAAGCGGAGCGAAAGGTTTCATTGACAACTAGAATAGTACCTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS-3UTR TCA 90 bp | AAAAGCTTAAGGAACATTTACTTTCCTGTTGTCTTTAGGGGAGAATCTCTATACCAGTTAAGGATGGCTTaGGGTCGGTTCATCAATCGG | + |
Preference number: 4 (lower is better) Translates to: KSLRNIYFPVVFRGESLYQLRMA*GRFINR Trigger: CCGATTGATGAACCGACCTCAAGCCATCCTTAACTG...GTATAGAGATTCTCCCCTAAAGACAACAGGAAAGTAAATGTTCCTTAAGCTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS-3UTR GCA 90 bp | AAGCATCTCCACTTCTTAACACATCTTCCAGACTCATCACTAGATTGTTTTATTCGCCTAGGGAACAGTTaGTTTGCATCCTTCCATCTG | + |
Preference number: 4 (lower is better) Translates to: KHLHFLTHLPDSSLDCFIRLGNS*FASFHL Trigger: CAGATGGAAGGATGCAAAGCAACTGTTCCCTAGGCG...AATAAAACAATCTAGTGATGAGTCTGGAAGATGTGTTAAGAAGTGGAGATGCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS-3UTR CCA 90 bp | ACAGGTACTATTCTAGTTGTCAATGAAACCTTTCGCTCCGCTTTAATACTTAATGGAAGAGGCACACCATaGCCAGCTAACTCTTGGAAT | + |
Preference number: 4 (lower is better) Translates to: TGTILVVNETFRSALILNGRGTP*PANSWN Trigger: ATTCCAAGAGTTAGCTGGCCATGGTGTGCCTCTTCC...ATTAAGTATTAAAGCGGAGCGAAAGGTTTCATTGACAACTAGAATAGTACCTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS-3UTR CCA 90 bp | GTTACTTCATCAATGGAGACAACATTCAGTAAAGAGGCAGCCTTCCTGAGTCCATTTCTGGAACAAATATaGAGCTTCATGCCGAATAAG | + |
Preference number: 4 (lower is better) Translates to: VTSSMETTFSKEAAFLSPFLEQI*SFMPNK Trigger: CTTATTCGGCATGAAGCTCCATATTTGTTCCAGAAA...TGGACTCAGGAAGGCTGCCTCTTTACTGAATGTTGTCTCCATTGATGAAGTAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
CDS-3UTR CCA 90 bp | TCATACGTAACTGAAAAGGTTACCATGAGAGCCTGCCATTTCTCTCTGTGTCACTTTCTGGAACAAATATaGAGCTTCATGCCGAATAAG | + |
Preference number: 4 (lower is better) Translates to: SYVTEKVTMRACHFSLCHFLEQI*SFMPNK Trigger: CTTATTCGGCATGAAGCTCCATATTTGTTCCAGAAA...GTGACACAGAGAGAAATGGCAGGCTCTCATGGTAACCTTTTCAGTTACGTATGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS-3UTR TCA 90 bp | AAGCATCTCCACTTCTTAACACATCTTCCAGACTCATCACTAGATTGTTTTATTAGATTAGCTCTCCACTaGTCCGAAGACCCAGATTTC | + |
Preference number: 4 (lower is better) Translates to: KHLHFLTHLPDSSLDCFIRLALH*SEDPDF Trigger: GAAATCTGGGTCTTCGGATCAGTGGAGAGCTAATCT...AATAAAACAATCTAGTGATGAGTCTGGAAGATGTGTTAAGAAGTGGAGATGCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
CDS-3UTR GCA 90 bp | AAAAGCTTAAGGAACATTTACTTTCCTGTTGTCTTTAGGGGAGAATCTCTATACGAACTCCAGCACTTCTaGTTCATCAATCATCTTAGC | + |
Preference number: 4 (lower is better) Translates to: KSLRNIYFPVVFRGESLYELQHF*FINHLS Trigger: GCTAAGATGATTGATGAAGCAGAAGTGCTGGAGTTC...GTATAGAGATTCTCCCCTAAAGACAACAGGAAAGTAAATGTTCCTTAAGCTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
3UTR CAA 72 bp | GGTGTCTTGTTAACCAAAAGTAGCATATTGTTTACTTaGGCCATTGTTAAAGATGCAGTCATAGAACAAGGG | + |
Preference number: 4 (lower is better) Translates to: GVLLTKSSILFT*AIVKDAVIEQG Trigger: CCCTTGTTCTATGACTGCATCTTTAACAATGGCCAAAGTAAACAATATGCTACTTTTGGTTAACAAGACACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS-3UTR CAA 90 bp | CCCTCGCTCCACTTGGTACGTCACATGCTATCTCTTCTCCTATGTAGGTTTAAGTCTGCACCCATGGGGTaGGAACTCTCACTACCACCA | + |
Preference number: 5 (lower is better) Translates to: PSLHLVRHMLSLLLCRFKSAPMG*ELSLPP Trigger: TGGTGGTAGTGAGAGTTCCAACCCCATGGGTGCAGA...CTTAAACCTACATAGGAGAAGAGATAGCATGTGACGTACCAAGTGGAGCGAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
CDS-3UTR CAA 90 bp | CATAATGTAAGTGGCAACCAGATGGTCTTAGGATCTGATTCCACGGTTGTTCATTCTGCACCCATGGGGTaGGAACTCTCACTACCACCA | + |
Preference number: 5 (lower is better) Translates to: HNVSGNQMVLGSDSTVVHSAPMG*ELSLPP Trigger: TGGTGGTAGTGAGAGTTCCAACCCCATGGGTGCAGA...ATGAACAACCGTGGAATCAGATCCTAAGACCATCTGGTTGCCACTTACATTATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
CDS-3UTR CAA 90 bp | TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTATCTGCACCCATGGGGTaGGAACTCTCACTACCACCA | + |
Preference number: 5 (lower is better) Translates to: WSVLNEGLGVGLYETQYLSAPMG*ELSLPP Trigger: TGGTGGTAGTGAGAGTTCCAACCCCATGGGTGCAGA...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS-3UTR CAA 90 bp | TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTACCGCCTAGGGAACAGTaGCTTTGCATCCTTCCATCT | + |
Preference number: 5 (lower is better) Translates to: WSVLNEGLGVGLYETQYLPPREQ*LCILPS Trigger: AGATGGAAGGATGCAAAGCAACTGTTCCCTAGGCGG...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS-3UTR CAA 90 bp | GGTGACAAAGATCTATCTTCATCCAGAACATCACTGGTTACTTCATCAATGGAGCCGCCTAGGGAACAGTaGCTTTGCATCCTTCCATCT | + |
Preference number: 5 (lower is better) Translates to: GDKDLSSSRTSLVTSSMEPPREQ*LCILPS Trigger: AGATGGAAGGATGCAAAGCAACTGTTCCCTAGGCGG...CTCCATTGATGAAGTAACCAGTGATGTTCTGGATGAAGATAGATCTTTGTCACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
CDS-3UTR CAA 90 bp | GGTGACAAAGATCTATCTTCATCCAGAACATCACTGGTTACTTCATCAATGGAGGCTCCTGAAAAGGATTaGCATTGGCCTCGCAGACAC | + |
Preference number: 5 (lower is better) Translates to: GDKDLSSSRTSLVTSSMEAPEKD*HWPRRH Trigger: GTGTCTGCGAGGCCAATGCAAATCCTTTTCAGGAGC...CTCCATTGATGAAGTAACCAGTGATGTTCTGGATGAAGATAGATCTTTGTCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146274.8 |
||
CDS-3UTR CAA 90 bp | TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTATCCTCTTCACAACATTaGGCCTTCAACGCTCGTAAG | + |
Preference number: 5 (lower is better) Translates to: WSVLNEGLGVGLYETQYLSSSQH*AFNARK Trigger: CTTACGAGCGTTGAAGGCCAAATGTTGTGAAGAGGA...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068242.9 |
||
CDS-3UTR CAA 90 bp | TGGTCAGTACTGAATGAAGGCTTAGGTGTGGGGCTATATGAGACTCAATACTTAACAGTTAAGGATGGCTaGAGGTCGGTTCATCAATCG | + |
Preference number: 5 (lower is better) Translates to: WSVLNEGLGVGLYETQYLTVKDG*RSVHQS Trigger: CGATTGATGAACCGACCTCAAGCCATCCTTAACTGT...TAAGTATTGAGTCTCATATAGCCCCACACCTAAGCCTTCATTCAGTACTGACCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS TCA 90 bp | CCAACTACACGACCTCCCACAACAATGACTCGTACATCCCTTCCATaGGACTCTTTAATGTATTTCTGGAACAAATATGGAGCTTCATGC | + |
Preference number: 5 (lower is better) Translates to: PTTRPPTTMTRTSLP*DSLMYFWNKYGASC Trigger: GCATGAAGCTCCATATTTGTTCCAGAAATACATTAAAGAGTCTCATGGAAGGGATGTACGAGTCATTGTTGTGGGAGGTCGTGTAGTTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068242.9 ENSMUST00000146274.8 ENSMUST00000204731.2 |
||
CDS-3UTR CAA 90 bp | AAGCATCTCCACTTCTTAACACATCTTCCAGACTCATCACTAGATTGTTTTATTCCGCCTAGGGAACAGTaGCTTTGCATCCTTCCATCT | + |
Preference number: 5 (lower is better) Translates to: KHLHFLTHLPDSSLDCFIPPREQ*LCILPS Trigger: AGATGGAAGGATGCAAAGCAACTGTTCCCTAGGCGG...AATAAAACAATCTAGTGATGAGTCTGGAAGATGTGTTAAGAAGTGGAGATGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068242.9 ENSMUST00000204731.2 |
||
CDS CAA 72 bp | ACCACAGCCCGAAAGTCCAATTCCTCTTCACAACATTaGGCCTTCAACGCTCGTAAGATCTCTTTCTGTGGG | + |
Preference number: 6 (lower is better) Translates to: TTARKSNSSSQH*AFNARKISFCG Trigger: CCCACAGAAAGAGATCTTACGAGCGTTGAAGGCCAAATGTTGTGAAGAGGAATTGGACTTTCGGGCTGTGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068242.9 ENSMUST00000204045.2 ENSMUST00000205114.2 |
||
CDS CCA 72 bp | TTCTGGAACAAATATGGAGCTTCATGCCGAATAAGATaGCTTAGATCCGCTAAATGGTGTTTATCTCGTGCC | + |
Preference number: 6 (lower is better) Translates to: FWNKYGASCRIR*LRSAKWCLSRA Trigger: GGCACGAGATAAACACCATTTAGCGGATCTAAGCCATCTTATTCGGCATGAAGCTCCATATTTGTTCCAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068242.9 ENSMUST00000146274.8 ENSMUST00000204731.2 |
||
CDS TCA 72 bp | CGACCTCCCACAACAATGACTCGTACATCCCTTCCATaGGACTCTTTAATGTATTTCTGGAACAAATATGGA | + |
Preference number: 6 (lower is better) Translates to: RPPTTMTRTSLP*DSLMYFWNKYG Trigger: TCCATATTTGTTCCAGAAATACATTAAAGAGTCTCATGGAAGGGATGTACGAGTCATTGTTGTGGGAGGTCG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068242.9 ENSMUST00000146274.8 ENSMUST00000204731.2 |