Pregenerated sensors for RILPL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029401Ensembl transcript IDs: ENSMUST00000031347.8
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGCTTACTGACTGTCCAGGTCTGTCCCCAGAGAGCAGGTGAGCCATaGGAGGGAGCATCTTCCTCTGACTGCTCTGTGCAGGAGCAAGCC | + |
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Preference number: 1 (lower is better) Translates to: SLLTVQVCPQRAGEP*EGASSSDCSVQEQA Trigger: GGCTTGCTCCTGCACAGAGCAGTCAGAGGAAGATGCTCCCTCCCATGGCTCACCTGCTCTCTGGGGACAGACCTGGACAGTCAGTAAGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| 3UTR TCA 90 bp | CTCCAGTTCTCAGTATTGGCCTCATTTGGCCTGGCCAAAGCTTACTaGCTGTCCAGGTCTGTCCCCAGAGAGCAGGTGAGCCATGGGAGG | + |
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Preference number: 1 (lower is better) Translates to: LQFSVLASFGLAKAY*LSRSVPREQVSHGR Trigger: CCTCCCATGGCTCACCTGCTCTCTGGGGACAGACCTGGACAGTCAGTAAGCTTTGGCCAGGCCAAATGAGGCCAATACTGAGAACTGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| 3UTR GCA 90 bp | TCCATGTGTGGAGGAGGCGGGATGCAGCCACACACTCTGTTCCTTTaGTTTCTCCAGTTCTCAGTATTGGCCTCATTTGGCCTGGCCAAA | + |
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Preference number: 1 (lower is better) Translates to: SMCGGGGMQPHTLFL*FLQFSVLASFGLAK Trigger: TTTGGCCAGGCCAAATGAGGCCAATACTGAGAACTGGAGAAAGCAAAGGAACAGAGTGTGTGGCTGCATCCCGCCTCCTCCACACATGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| 3UTR TCA 90 bp | TCTTCCTCTGACTGCTCTGTGCAGGAGCAAGCCAAGGCACATTCCTaGCACAGGAAGGTGGTTCCAGAAGGCATATTGGCAATTGTCTTC | + |
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Preference number: 1 (lower is better) Translates to: SSSDCSVQEQAKAHS*HRKVVPEGILAIVF Trigger: GAAGACAATTGCCAATATGCCTTCTGGAACCACCTTCCTGTGTCAGGAATGTGCCTTGGCTTGCTCCTGCACAGAGCAGTCAGAGGAAGA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| 3UTR CCA 90 bp | TGCAGCCACACACTCTGTTCCTTTGCTTTCTCCAGTTCTCAGTATTaGCCTCATTTGGCCTGGCCAAAGCTTACTGACTGTCCAGGTCTG | + |
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Preference number: 1 (lower is better) Translates to: CSHTLCSFAFSSSQY*PHLAWPKLTDCPGL Trigger: CAGACCTGGACAGTCAGTAAGCTTTGGCCAGGCCAAATGAGGCCAATACTGAGAACTGGAGAAAGCAAAGGAACAGAGTGTGTGGCTGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| 3UTR CAA 90 bp | GTCCATGTGTGGAGGAGGCGGGATGCAGCCACACACTCTGTTCCTTaGCTTTCTCCAGTTCTCAGTATTGGCCTCATTTGGCCTGGCCAA | + |
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Preference number: 2 (lower is better) Translates to: VHVWRRRDAATHSVP*LSPVLSIGLIWPGQ Trigger: TTGGCCAGGCCAAATGAGGCCAATACTGAGAACTGGAGAAAGCAAAGGAACAGAGTGTGTGGCTGCATCCCGCCTCCTCCACACATGGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| 3UTR-3UTR CCA 90 bp | ACTCTGTTCCTTTGCTTTCTCCAGTTCTCAGTATTGGCCTCATTTGGCCTGGCCAGAGCAGGTGAGCCATaGGAGGGAGCATCTTCCTCT | + |
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Preference number: 2 (lower is better) Translates to: TLFLCFLQFSVLASFGLARAGEP*EGASSS Trigger: AGAGGAAGATGCTCCCTCCCATGGCTCACCTGCTCT...GGCCAGGCCAAATGAGGCCAATACTGAGAACTGGAGAAAGCAAAGGAACAGAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| 3UTR-3UTR TCA 90 bp | TCTGTTCCTTTGCTTTCTCCAGTTCTCAGTATTGGCCTCATTTGGCCTGGCCAAGCCAAGGCACATTCCTaGCACAGGAAGGTGGTTCCA | + |
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Preference number: 2 (lower is better) Translates to: SVPLLSPVLSIGLIWPGQAKAHS*HRKVVP Trigger: TGGAACCACCTTCCTGTGTCAGGAATGTGCCTTGGC...TTGGCCAGGCCAAATGAGGCCAATACTGAGAACTGGAGAAAGCAAAGGAACAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| 3UTR-3UTR CCA 90 bp | TTACTGACTGTCCAGGTCTGTCCCCAGAGAGCAGGTGAGCCATGGGAGGGAGCATTCCAGAAGGCATATTaGCAATTGTCTTCTCAAGTC | + |
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Preference number: 2 (lower is better) Translates to: LLTVQVCPQRAGEPWEGAFQKAY*QLSSQV Trigger: GACTTGAGAAGACAATTGCCAATATGCCTTCTGGAA...TGCTCCCTCCCATGGCTCACCTGCTCTCTGGGGACAGACCTGGACAGTCAGTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| 3UTR CCA 72 bp | GGAACGAGCCACAGGCCAGAGGCCTCTGTCCATGTGTaGAGGAGGCGGGATGCAGCCACACACTCTGTTCCT | + |
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Preference number: 3 (lower is better) Translates to: GTSHRPEASVHV*RRRDAATHSVP Trigger: AGGAACAGAGTGTGTGGCTGCATCCCGCCTCCTCCACACATGGACAGAGGCCTCTGGCCTGTGGCTCGTTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| 3UTR GCA 72 bp | AGCCATGGGAGGGAGCATCTTCCTCTGACTGCTCTGTaGAGGAGCAAGCCAAGGCACATTCCTGACACAGGA | + |
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Preference number: 3 (lower is better) Translates to: SHGREHLPLTAL*RSKPRHIPDTG Trigger: TCCTGTGTCAGGAATGTGCCTTGGCTTGCTCCTGCACAGAGCAGTCAGAGGAAGATGCTCCCTCCCATGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| 3UTR TCA 72 bp | TCAGTATTGGCCTCATTTGGCCTGGCCAAAGCTTACTaGCTGTCCAGGTCTGTCCCCAGAGAGCAGGTGAGC | + |
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Preference number: 3 (lower is better) Translates to: SVLASFGLAKAY*LSRSVPREQVS Trigger: GCTCACCTGCTCTCTGGGGACAGACCTGGACAGTCAGTAAGCTTTGGCCAGGCCAAATGAGGCCAATACTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| 3UTR GCA 72 bp | GGAGGAGGCGGGATGCAGCCACACACTCTGTTCCTTTaGTTTCTCCAGTTCTCAGTATTGGCCTCATTTGGC | + |
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Preference number: 3 (lower is better) Translates to: GGGGMQPHTLFL*FLQFSVLASFG Trigger: GCCAAATGAGGCCAATACTGAGAACTGGAGAAAGCAAAGGAACAGAGTGTGTGGCTGCATCCCGCCTCCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| 3UTR GCA 72 bp | TCAAATATCAGTCAAGGCGATGATTCCATATGTTCCTaGTTTTCCATCGCTCCCGGCCACGTGCTAAGGACC | + |
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Preference number: 3 (lower is better) Translates to: SNISQGDDSICS*FSIAPGHVLRT Trigger: GGTCCTTAGCACGTGGCCGGGAGCGATGGAAAAGCAGGAACATATGGAATCATCGCCTTGACTGATATTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| 3UTR CCA 72 bp | ATTCCTGACACAGGAAGGTGGTTCCAGAAGGCATATTaGCAATTGTCTTCTCAAGTCAAGAGGGTCACCATC | + |
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Preference number: 3 (lower is better) Translates to: IPDTGRWFQKAY*QLSSQVKRVTI Trigger: GATGGTGACCCTCTTGACTTGAGAAGACAATTGCCAATATGCCTTCTGGAACCACCTTCCTGTGTCAGGAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| 3UTR CCA 72 bp | ACACTCTGTTCCTTTGCTTTCTCCAGTTCTCAGTATTaGCCTCATTTGGCCTGGCCAAAGCTTACTGACTGT | + |
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Preference number: 3 (lower is better) Translates to: TLCSFAFSSSQY*PHLAWPKLTDC Trigger: ACAGTCAGTAAGCTTTGGCCAGGCCAAATGAGGCCAATACTGAGAACTGGAGAAAGCAAAGGAACAGAGTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| 3UTR-3UTR CAA 90 bp | TCTGTTCCTTTGCTTTCTCCAGTTCTCAGTATTGGCCTCATTTGGCCTGGCCAAGTTCCAGAAGGCATATaGGCAATTGTCTTCTCAAGT | + |
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Preference number: 3 (lower is better) Translates to: SVPLLSPVLSIGLIWPGQVPEGI*AIVFSS Trigger: ACTTGAGAAGACAATTGCCAATATGCCTTCTGGAAC...TTGGCCAGGCCAAATGAGGCCAATACTGAGAACTGGAGAAAGCAAAGGAACAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| 3UTR TCA 72 bp | AGAGATCAAGTATTCATCAAATATCAGTCAAGGCGATaGTTCCATATGTTCCTGCTTTTCCATCGCTCCCGG | + |
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Preference number: 3 (lower is better) Translates to: RDQVFIKYQSRR*FHMFLLFHRSR Trigger: CCGGGAGCGATGGAAAAGCAGGAACATATGGAATCATCGCCTTGACTGATATTTGATGAATACTTGATCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS-3UTR GCA 90 bp | CAGGAACGAGCCACAGGCCAGAGGCCTCTGTCCATGTGTGGAGGAGGCGGGATGCCTCCTTCTCGCCGTTaGCCATGGCAACCACAGCAT | + |
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Preference number: 4 (lower is better) Translates to: QERATGQRPLSMCGGGGMPPSRR*PWQPQH Trigger: ATGCTGTGGTTGCCATGGGCAACGGCGAGAAGGAGG...CATCCCGCCTCCTCCACACATGGACAGAGGCCTCTGGCCTGTGGCTCGTTCCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS-3UTR TCA 90 bp | GGGAGGGAGCATCTTCCTCTGACTGCTCTGTGCAGGAGCAAGCCAAGGCACATTGCAGCAGCTGCGACTTaGGCTTGTTTCGCTCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: GREHLPLTALCRSKPRHIAAAAT*ACFAPA Trigger: TGCAGGAGCGAAACAAGCTCAAGTCGCAGCTGCTGC...AATGTGCCTTGGCTTGCTCCTGCACAGAGCAGTCAGAGGAAGATGCTCCCTCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS-3UTR GCA 90 bp | CCATGGGAGGGAGCATCTTCCTCTGACTGCTCTGTGCAGGAGCAAGCCAAGGCAAGCCCCTCCACCTCTTaGTTGAGGTTGTCTCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: PWEGASSSDCSVQEQAKASPSTS*LRLSLS Trigger: GGAGAGAGACAACCTCAAGCAAGAGGTGGAGGGGCT...TGCCTTGGCTTGCTCCTGCACAGAGCAGTCAGAGGAAGATGCTCCCTCCCATGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS-3UTR TCA 90 bp | ACTCTGTTCCTTTGCTTTCTCCAGTTCTCAGTATTGGCCTCATTTGGCCTGGCCTCAGCTCTTGCAGAGTaGAGCGGGGACGGTTGGGGT | + |
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Preference number: 4 (lower is better) Translates to: TLFLCFLQFSVLASFGLASALAE*SGDGWG Trigger: ACCCCAACCGTCCCCGCTTCACTCTGCAAGAGCTGA...GGCCAGGCCAAATGAGGCCAATACTGAGAACTGGAGAAAGCAAAGGAACAGAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| 3UTR CAA 72 bp | TGGAGGAGGCGGGATGCAGCCACACACTCTGTTCCTTaGCTTTCTCCAGTTCTCAGTATTGGCCTCATTTGG | + |
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Preference number: 4 (lower is better) Translates to: WRRRDAATHSVP*LSPVLSIGLIW Trigger: CCAAATGAGGCCAATACTGAGAACTGGAGAAAGCAAAGGAACAGAGTGTGTGGCTGCATCCCGCCTCCTCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS-3UTR TCA 90 bp | ACACTCTGTTCCTTTGCTTTCTCCAGTTCTCAGTATTGGCCTCATTTGGCCTGGCCTCCACCTCTTGCTTaGGGTTGTCTCTCTCCATCC | + |
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Preference number: 4 (lower is better) Translates to: TLCSFAFSSSQYWPHLAWPPPLA*GCLSPS Trigger: GGATGGAGAGAGACAACCTCAAGCAAGAGGTGGAGG...CCAGGCCAAATGAGGCCAATACTGAGAACTGGAGAAAGCAAAGGAACAGAGTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS-3UTR GCA 90 bp | TTGGCAATTGTCTTCTCAAGTCAAGAGGGTCACCATCTTGGTGATGGTTTTCAGACCTCCCTCAGCTCTTaGAGAGTGAAGCGGGGACGG | + |
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Preference number: 4 (lower is better) Translates to: LAIVFSSQEGHHLGDGFQTSLSS*RVKRGR Trigger: CCGTCCCCGCTTCACTCTGCAAGAGCTGAGGGAGGT...CTGAAAACCATCACCAAGATGGTGACCCTCTTGACTTGAGAAGACAATTGCCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS-3UTR GCA 90 bp | AGGTGGTTCCAGAAGGCATATTGGCAATTGTCTTCTCAAGTCAAGAGGGTCACCTGCACCAGCAGCAGCTaGGACTTGAGCTTGTTTCGC | + |
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Preference number: 4 (lower is better) Translates to: RWFQKAYWQLSSQVKRVTCTSSS*DLSLFR Trigger: GCGAAACAAGCTCAAGTCGCAGCTGCTGCTGGTGCA...GGTGACCCTCTTGACTTGAGAAGACAATTGCCAATATGCCTTCTGGAACCACCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS-3UTR GCA 90 bp | ATATTGGCAATTGTCTTCTCAAGTCAAGAGGGTCACCATCTTGGTGATGGTTTTAGCTTGTTTCGCTCCTaGAGCACCTCCCTCAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: ILAIVFSSQEGHHLGDGFSLFRS*STSLSS Trigger: AGAGCTGAGGGAGGTGCTGCAGGAGCGAAACAAGCT...AAAACCATCACCAAGATGGTGACCCTCTTGACTTGAGAAGACAATTGCCAATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS-3UTR CCA 90 bp | TATTCATCAAATATCAGTCAAGGCGATGATTCCATATGTTCCTGCTTTTCCATCGGTCCCAAGTTTACCTaGGCTCCGGACACACCGGCT | + |
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Preference number: 4 (lower is better) Translates to: YSSNISQGDDSICSCFSIGPKFT*APDTPA Trigger: AGCCGGTGTGTCCGGAGCCCAGGTAAACTTGGGACC...GATGGAAAAGCAGGAACATATGGAATCATCGCCTTGACTGATATTTGATGAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS TCA 90 bp | GGGCTCCGGACACACCGGCTTTCCGCAGCCCCTCCACCTCTTGCTTaGGGTTGTCTCTCTCCATCCTCAGTTCCTCGACCGCCAGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: GLRTHRLSAAPPPLA*GCLSPSSVPRPPGC Trigger: GCAGCCTGGCGGTCGAGGAACTGAGGATGGAGAGAGACAACCTCAAGCAAGAGGTGGAGGGGCTGCGGAAAGCCGGTGTGTCCGGAGCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS GCA 90 bp | ACCTGGGCTCCGGACACACCGGCTTTCCGCAGCCCCTCCACCTCTTaGTTGAGGTTGTCTCTCTCCATCCTCAGTTCCTCGACCGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: TWAPDTPAFRSPSTS*LRLSLSILSSSTAR Trigger: CCTGGCGGTCGAGGAACTGAGGATGGAGAGAGACAACCTCAAGCAAGAGGTGGAGGGGCTGCGGAAAGCCGGTGTGTCCGGAGCCCAGGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS GCA 90 bp | TTTACCAGCGTCTCCAGCATCTCCATCACACGTACTATCTTGAACTaGAGCCGGGTGACGCGGGGGTCGCTGCCCAGGGCCATCAGCTCG | + |
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Preference number: 5 (lower is better) Translates to: FTSVSSISITRTILN*SRVTRGSLPRAISS Trigger: CGAGCTGATGGCCCTGGGCAGCGACCCCCGCGTCACCCGGCTGCAGTTCAAGATAGTACGTGTGATGGAGATGCTGGAGACGCTGGTAAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS-3UTR CAA 90 bp | AGTCAAGGCGATGATTCCATATGTTCCTGCTTTTCCATCGCTCCCGGCCACGTGGTGAAGCGGGGACGGTaGGGGTCTGTCAGATCCACT | + |
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Preference number: 5 (lower is better) Translates to: SQGDDSICSCFSIAPGHVVKRGR*GSVRST Trigger: AGTGGATCTGACAGACCCCAACCGTCCCCGCTTCAC...CACGTGGCCGGGAGCGATGGAAAAGCAGGAACATATGGAATCATCGCCTTGACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS-3UTR CAA 90 bp | AGTCAAGGCGATGATTCCATATGTTCCTGCTTTTCCATCGCTCCCGGCCACGTGTCCTCCTTCTCGCCGTaGCCCATGGCAACCACAGCA | + |
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Preference number: 5 (lower is better) Translates to: SQGDDSICSCFSIAPGHVSSFSP*PMATTA Trigger: TGCTGTGGTTGCCATGGGCAACGGCGAGAAGGAGGA...CACGTGGCCGGGAGCGATGGAAAAGCAGGAACATATGGAATCATCGCCTTGACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS-3UTR CAA 90 bp | AGCCAAGGCACATTCCTGACACAGGAAGGTGGTTCCAGAAGGCATATTGGCAATCACCTCCCTCAGCTCTaGCAGAGTGAAGCGGGGACG | + |
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Preference number: 5 (lower is better) Translates to: SQGTFLTQEGGSRRHIGNHLPQL*QSEAGT Trigger: CGTCCCCGCTTCACTCTGCAAGAGCTGAGGGAGGTG...ATTGCCAATATGCCTTCTGGAACCACCTTCCTGTGTCAGGAATGTGCCTTGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS-3UTR CAA 90 bp | GGTGGTTCCAGAAGGCATATTGGCAATTGTCTTCTCAAGTCAAGAGGGTCACCAAGCTGCGACTTGAGCTaGTTTCGCTCCTGCAGCACC | + |
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Preference number: 5 (lower is better) Translates to: GGSRRHIGNCLLKSRGSPSCDLS*FRSCST Trigger: GGTGCTGCAGGAGCGAAACAAGCTCAAGTCGCAGCT...TGGTGACCCTCTTGACTTGAGAAGACAATTGCCAATATGCCTTCTGGAACCACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS-3UTR CAA 90 bp | TTGGCAATTGTCTTCTCAAGTCAAGAGGGTCACCATCTTGGTGATGGTTTTCAGCAGCCCCTCCACCTCTaGCTTGAGGTTGTCTCTCTC | + |
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Preference number: 5 (lower is better) Translates to: LAIVFSSQEGHHLGDGFQQPLHL*LEVVSL Trigger: GAGAGAGACAACCTCAAGCAAGAGGTGGAGGGGCTG...CTGAAAACCATCACCAAGATGGTGACCCTCTTGACTTGAGAAGACAATTGCCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS-3UTR CAA 90 bp | ATATTGGCAATTGTCTTCTCAAGTCAAGAGGGTCACCATCTTGGTGATGGTTTTCCCTCCACCTCTTGCTaGAGGTTGTCTCTCTCCATC | + |
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Preference number: 5 (lower is better) Translates to: ILAIVFSSQEGHHLGDGFPSTSC*RLSLSI Trigger: GATGGAGAGAGACAACCTCAAGCAAGAGGTGGAGGG...AAAACCATCACCAAGATGGTGACCCTCTTGACTTGAGAAGACAATTGCCAATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS CCA 72 bp | GGCCCACTACATAGGAGATGTCGTACACGTCGTCGGTaGTCAGCTGCAGGGGGCTCTTGGCCAGGGCGCCCT | + |
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Preference number: 6 (lower is better) Translates to: GPLHRRCRTRRR*SAAGGSWPGRP Trigger: AGGGCGCCCTGGCCAAGAGCCCCCTGCAGCTGACCACCGACGACGTGTACGACATCTCCTATGTAGTGGGCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS CAA 90 bp | CCGGACACACCGGCTTTCCGCAGCCCCTCCACCTCTTGCTTGAGGTaGTCTCTCTCCATCCTCAGTTCCTCGACCGCCAGGCTGCCCTCG | + |
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Preference number: 6 (lower is better) Translates to: PDTPAFRSPSTSCLR*SLSILSSSTARLPS Trigger: CGAGGGCAGCCTGGCGGTCGAGGAACTGAGGATGGAGAGAGACAACCTCAAGCAAGAGGTGGAGGGGCTGCGGAAAGCCGGTGTGTCCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS GCA 72 bp | GTCTCCAGCATCTCCATCACACGTACTATCTTGAACTaGAGCCGGGTGACGCGGGGGTCGCTGCCCAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: VSSISITRTILN*SRVTRGSLPRA Trigger: GGCCCTGGGCAGCGACCCCCGCGTCACCCGGCTGCAGTTCAAGATAGTACGTGTGATGGAGATGCTGGAGAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS CAA 90 bp | TGGGCTCCGGACACACCGGCTTTCCGCAGCCCCTCCACCTCTTGCTaGAGGTTGTCTCTCTCCATCCTCAGTTCCTCGACCGCCAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: WAPDTPAFRSPSTSC*RLSLSILSSSTARL Trigger: CAGCCTGGCGGTCGAGGAACTGAGGATGGAGAGAGACAACCTCAAGCAAGAGGTGGAGGGGCTGCGGAAAGCCGGTGTGTCCGGAGCCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS CAA 90 bp | CCCTCGTTTACCAGCGTCTCCAGCATCTCCATCACACGTACTATCTaGAACTGCAGCCGGGTGACGCGGGGGTCGCTGCCCAGGGCCATC | + |
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Preference number: 6 (lower is better) Translates to: PSFTSVSSISITRTI*NCSRVTRGSLPRAI Trigger: GATGGCCCTGGGCAGCGACCCCCGCGTCACCCGGCTGCAGTTCAAGATAGTACGTGTGATGGAGATGCTGGAGACGCTGGTAAACGAGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS CAA 90 bp | TACCTGGGCTCCGGACACACCGGCTTTCCGCAGCCCCTCCACCTCTaGCTTGAGGTTGTCTCTCTCCATCCTCAGTTCCTCGACCGCCAG | + |
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Preference number: 6 (lower is better) Translates to: YLGSGHTGFPQPLHL*LEVVSLHPQFLDRQ Trigger: CTGGCGGTCGAGGAACTGAGGATGGAGAGAGACAACCTCAAGCAAGAGGTGGAGGGGCTGCGGAAAGCCGGTGTGTCCGGAGCCCAGGTA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS CAA 72 bp | ACCAGCGTCTCCAGCATCTCCATCACACGTACTATCTaGAACTGCAGCCGGGTGACGCGGGGGTCGCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: TSVSSISITRTI*NCSRVTRGSLP Trigger: GGGCAGCGACCCCCGCGTCACCCGGCTGCAGTTCAAGATAGTACGTGTGATGGAGATGCTGGAGACGCTGGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS CAA 72 bp | CCGGCTTTCCGCAGCCCCTCCACCTCTTGCTTGAGGTaGTCTCTCTCCATCCTCAGTTCCTCGACCGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: PAFRSPSTSCLR*SLSILSSSTAR Trigger: CCTGGCGGTCGAGGAACTGAGGATGGAGAGAGACAACCTCAAGCAAGAGGTGGAGGGGCTGCGGAAAGCCGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS CCA 72 bp | AGATCCACTACCATCTTGTCCGGTCCCAAGTTTACCTaGGCTCCGGACACACCGGCTTTCCGCAGCCCCTCC | + |
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Preference number: 6 (lower is better) Translates to: RSTTILSGPKFT*APDTPAFRSPS Trigger: GGAGGGGCTGCGGAAAGCCGGTGTGTCCGGAGCCCAGGTAAACTTGGGACCGGACAAGATGGTAGTGGATCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS GCA 72 bp | ACCAGCAGCAGCTGCGACTTGAGCTTGTTTCGCTCCTaGAGCACCTCCCTCAGCTCTTGCAGAGTGAAGCGG | + |
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Preference number: 6 (lower is better) Translates to: TSSSCDLSLFRS*STSLSSCRVKR Trigger: CCGCTTCACTCTGCAAGAGCTGAGGGAGGTGCTGCAGGAGCGAAACAAGCTCAAGTCGCAGCTGCTGCTGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS CAA 72 bp | GACACACCGGCTTTCCGCAGCCCCTCCACCTCTTGCTaGAGGTTGTCTCTCTCCATCCTCAGTTCCTCGACC | + |
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Preference number: 6 (lower is better) Translates to: DTPAFRSPSTSC*RLSLSILSSST Trigger: GGTCGAGGAACTGAGGATGGAGAGAGACAACCTCAAGCAAGAGGTGGAGGGGCTGCGGAAAGCCGGTGTGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS CAA 72 bp | TCCGGACACACCGGCTTTCCGCAGCCCCTCCACCTCTaGCTTGAGGTTGTCTCTCTCCATCCTCAGTTCCTC | + |
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Preference number: 6 (lower is better) Translates to: SGHTGFPQPLHL*LEVVSLHPQFL Trigger: GAGGAACTGAGGATGGAGAGAGACAACCTCAAGCAAGAGGTGGAGGGGCTGCGGAAAGCCGGTGTGTCCGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS CAA 90 bp | TCCTGCAGCACCTCCCTCAGCTCTTGCAGAGTGAAGCGGGGACGGTaGGGGTCTGTCAGATCCACTACCATCTTGTCCGGTCCCAAGTTT | + |
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Preference number: 6 (lower is better) Translates to: SCSTSLSSCRVKRGR*GSVRSTTILSGPKF Trigger: AAACTTGGGACCGGACAAGATGGTAGTGGATCTGACAGACCCCAACCGTCCCCGCTTCACTCTGCAAGAGCTGAGGGAGGTGCTGCAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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| CDS CAA 72 bp | AGCTTCTTCATAATGGTCCTCTCCTCCTTCTCGCCGTaGCCCATGGCAACCACAGCATCCTTCTCTCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: SFFIMVLSSFSP*PMATTASFSLL Trigger: AAGAAGAGAGAAGGATGCTGTGGTTGCCATGGGCAACGGCGAGAAGGAGGAGAGGACCATTATGAAGAAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031347.8 |
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