RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RILP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038195

Ensembl transcript IDs: ENSMUST00000042972.7

Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCCCAGCGAGGCAGGCAGGCAGGCAGGCAGTCCTCTGTCTCACAATaGGGAAAAGCAGAGCTCAGAGATCCCTTTATGTCTGTAAAGTGT +
Preference number: 1 (lower is better)
Translates to: PQRGRQAGRQSSVSQ*GKAELRDPFMSVKC
Trigger: ACACTTTACAGACATAAAGGGATCTCTGAGCTCTGCTTTTCCCCATTGTGAGACAGAGGACTGCCTGCCTGCCTGCCTGCCTCGCTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
3UTR-3UTR TCA 90 bp GCTCAGAGATCCCTTTATGTCTGTAAAGTGTGGTACAGAGATGTCAAGAATGGGAGCCTCCTGCATAGCTaGAGCCCTCAGACCAAGATG +
Preference number: 2 (lower is better)
Translates to: AQRSLYVCKVWYRDVKNGSLLHS*SPQTKM
Trigger: CATCTTGGTCTGAGGGCTTCAGCTATGCAGGAGGCT...CCCATTCTTGACATCTCTGTACCACACTTTACAGACATAAAGGGATCTCTGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
3UTR-3UTR TCA 90 bp AGATCCCTTTATGTCTGTAAAGTGTGGTACAGAGATGTCAAGAATGGGAGACAGAGCCACATCCTCATTTaGGGTCACACATCCACACAC +
Preference number: 2 (lower is better)
Translates to: RSLYVCKVWYRDVKNGRQSHILI*GHTSTH
Trigger: GTGTGTGGATGTGTGACCTCAAATGAGGATGTGGCT...CTGTCTCCCATTCTTGACATCTCTGTACCACACTTTACAGACATAAAGGGATCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
3UTR-3UTR CCA 90 bp AGAGCTCAGAGATCCCTTTATGTCTGTAAAGTGTGGTACAGAGATGTCAAGAATCAGGCGAGGTTTAAGTaGGGAGCCACATCCTCATTT +
Preference number: 2 (lower is better)
Translates to: RAQRSLYVCKVWYRDVKNQARFK*GATSSF
Trigger: AAATGAGGATGTGGCTCCCCACTTAAACCTCGCCTG...ATTCTTGACATCTCTGTACCACACTTTACAGACATAAAGGGATCTCTGAGCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
3UTR CCA 72 bp GGCAGGCAGGCAGGCAGGCAGTCCTCTGTCTCACAATaGGGAAAAGCAGAGCTCAGAGATCCCTTTATGTCT +
Preference number: 3 (lower is better)
Translates to: GRQAGRQSSVSQ*GKAELRDPFMS
Trigger: AGACATAAAGGGATCTCTGAGCTCTGCTTTTCCCCATTGTGAGACAGAGGACTGCCTGCCTGCCTGCCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
3UTR TCA 72 bp GTTAGCTGGAATCCAGAGTTAAGCCTCCTGCATAGCTaGAGCCCTCAGACCAAGATGTTCATTGAAAGCAGG +
Preference number: 3 (lower is better)
Translates to: VSWNPELSLLHS*SPQTKMFIESR
Trigger: CCTGCTTTCAATGAACATCTTGGTCTGAGGGCTTCAGCTATGCAGGAGGCTTAACTCTGGATTCCAGCTAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
3UTR CCA 72 bp AGCAGAGCTCAGAGATCCCTTTATGTCTGTAAAGTGTaGTACAGAGATGTCAAGAATGGGAGACAGGCTGAC +
Preference number: 3 (lower is better)
Translates to: SRAQRSLYVCKV*YRDVKNGRQAD
Trigger: GTCAGCCTGTCTCCCATTCTTGACATCTCTGTACCACACTTTACAGACATAAAGGGATCTCTGAGCTCTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR CCA 90 bp AGGCAGGCAGGCAGGCAGGCAGTCCTCTGTCTCACAATGGGGAAAAGCAGAGCTCCTGACTGGGTAGCCTaGGCGCTGCCCTCCTGGGCT +
Preference number: 4 (lower is better)
Translates to: RQAGRQAVLCLTMGKSRAPDWVA*ALPSWA
Trigger: AGCCCAGGAGGGCAGCGCCCAGGCTACCCAGTCAGG...AGCTCTGCTTTTCCCCATTGTGAGACAGAGGACTGCCTGCCTGCCTGCCTGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR GCA 90 bp TTATGGTTATTTATTGCACTGGTCACCTGCACAAGCCCCAGCGAGGCAGGCAGGAGCGCGCGCTCCTCCTaGGGCCCGGAGCCTAGCTCC +
Preference number: 4 (lower is better)
Translates to: LWLFIALVTCTSPSEAGRSARSS*GPEPSS
Trigger: GGAGCTAGGCTCCGGGCCGCAGGAGGAGCGCGCGCT...CCTGCCTGCCTCGCTGGGGCTTGTGCAGGTGACCAGTGCAATAAATAACCATAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR TCA 90 bp CAGGCAGGCAGGCAGGCAGTCCTCTGTCTCACAATGGGGAAAAGCAGAGCTCAGTGGCTGGAGCCATCCTaGGCTATCTGGCGCTCCCTC +
Preference number: 4 (lower is better)
Translates to: QAGRQAVLCLTMGKSRAQWLEPS*AIWRSL
Trigger: GAGGGAGCGCCAGATAGCTCAGGATGGCTCCAGCCA...CTGAGCTCTGCTTTTCCCCATTGTGAGACAGAGGACTGCCTGCCTGCCTGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR GCA 90 bp AGGCAGGCAGGCAGGCAGGCAGTCCTCTGTCTCACAATGGGGAAAAGCAGAGCTCCGCAGCTCCACTTCTaGCTGCTGTGCGGACACCTG +
Preference number: 4 (lower is better)
Translates to: RQAGRQAVLCLTMGKSRAPQLHF*LLCGHL
Trigger: CAGGTGTCCGCACAGCAGGCAGAAGTGGAGCTGCGG...AGCTCTGCTTTTCCCCATTGTGAGACAGAGGACTGCCTGCCTGCCTGCCTGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR TCA 90 bp AGGCAGGCAGGCAGGCAGGCAGTCCTCTGTCTCACAATGGGGAAAAGCAGAGCTGCCGCAGCTCAGAGTTaGTCAGCAGGAGGCGCTGTA +
Preference number: 4 (lower is better)
Translates to: RQAGRQAVLCLTMGKSRAAAAQS*SAGGAV
Trigger: TACAGCGCCTCCTGCTGATCAACTCTGAGCTGCGGC...AGCTCTGCTTTTCCCCATTGTGAGACAGAGGACTGCCTGCCTGCCTGCCTGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR GCA 90 bp GGCAGGCAGGCAGGCAGTCCTCTGTCTCACAATGGGGAAAAGCAGAGCTCAGAGCACTTCTGCCTGCTGTaGGGACACCTGCAGCGAGTC +
Preference number: 4 (lower is better)
Translates to: GRQAGSPLSHNGEKQSSEHFCLL*GHLQRV
Trigger: GACTCGCTGCAGGTGTCCGCACAGCAGGCAGAAGTG...CTCTGAGCTCTGCTTTTCCCCATTGTGAGACAGAGGACTGCCTGCCTGCCTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR GCA 90 bp CAGGCAGGCAGGCAGGCAGTCCTCTGTCTCACAATGGGGAAAAGCAGAGCTCAGGGCTGCAGGTGGGGTTaGTGTGGGGTCTCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: QAGRQAVLCLTMGKSRAQGCRWG*CGVSSP
Trigger: AGGAGAAGAGACCCCACAGCAACCCCACCTGCAGCC...CTGAGCTCTGCTTTTCCCCATTGTGAGACAGAGGACTGCCTGCCTGCCTGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR CCA 90 bp AGGCAGGCAGGCAGGCAGGCAGTCCTCTGTCTCACAATGGGGAAAAGCAGAGCTCTGCTGAATCCACACTaGACAGCTTCTGGAAGGTTC +
Preference number: 4 (lower is better)
Translates to: RQAGRQAVLCLTMGKSRALLNPH*TASGRF
Trigger: GAACCTTCCAGAAGCTGTCCAGTGTGGATTCAGCAG...AGCTCTGCTTTTCCCCATTGTGAGACAGAGGACTGCCTGCCTGCCTGCCTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR GCA 90 bp GGCAGGCAGGCAGGCAGTCCTCTGTCTCACAATGGGGAAAAGCAGAGCTCAGAGCCTCTGTTTCTTGACTaGCACCTTCATGGCTTCAAG +
Preference number: 4 (lower is better)
Translates to: GRQAGSPLSHNGEKQSSEPLFLD*HLHGFK
Trigger: CTTGAAGCCATGAAGGTGGCAGTCAAGAAACAGAGG...CTCTGAGCTCTGCTTTTCCCCATTGTGAGACAGAGGACTGCCTGCCTGCCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR CCA 90 bp TATGTCTGTAAAGTGTGGTACAGAGATGTCAAGAATGGGAGACAGGCTGACGTTTCCCTCTCCCGGTCCTaGGCGGCCCTCAACTGGGTC +
Preference number: 4 (lower is better)
Translates to: YVCKVWYRDVKNGRQADVSLSRS*AALNWV
Trigger: GACCCAGTTGAGGGCCGCCCAGGACCGGGAGAGGGA...AACGTCAGCCTGTCTCCCATTCTTGACATCTCTGTACCACACTTTACAGACATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR CCA 90 bp GGAGCCACATCCTCATTTGAGGTCACACATCCACACACAGTTAGCTGGAATCCATGGAAGCTGGGTTGCTaGTCTCGGCTTCAGGGGCCT +
Preference number: 4 (lower is better)
Translates to: GATSSFEVTHPHTVSWNPWKLGC*SRLQGP
Trigger: AGGCCCCTGAAGCCGAGACCAGCAACCCAGCTTCCA...TGGATTCCAGCTAACTGTGTGTGGATGTGTGACCTCAAATGAGGATGTGGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR CCA 90 bp AGGCAGGCAGTCCTCTGTCTCACAATGGGGAAAAGCAGAGCTCAGAGATCCCTTACACTGGACAGCTTCTaGAAGGTTCCCTGGCTGCTT +
Preference number: 4 (lower is better)
Translates to: RQAVLCLTMGKSRAQRSLTLDSF*KVPWLL
Trigger: AAGCAGCCAGGGAACCTTCCAGAAGCTGTCCAGTGT...AAGGGATCTCTGAGCTCTGCTTTTCCCCATTGTGAGACAGAGGACTGCCTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR TCA 90 bp CCCTTTATGTCTGTAAAGTGTGGTACAGAGATGTCAAGAATGGGAGACAGGCTGAGCCCAGGAACACGGTaGTCTGTGAGCAGCTCTCGC +
Preference number: 4 (lower is better)
Translates to: PFMSVKCGTEMSRMGDRLSPGTR*SVSSSR
Trigger: GCGAGAGCTGCTCACAGATCACCGTGTTCCTGGGCT...CAGCCTGTCTCCCATTCTTGACATCTCTGTACCACACTTTACAGACATAAAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR CCA 90 bp AGAGATCCCTTTATGTCTGTAAAGTGTGGTACAGAGATGTCAAGAATGGGAGACTGGGCGGCCCTCAACTaGGTCTGCACTGCAGCCAGC +
Preference number: 4 (lower is better)
Translates to: RDPFMSVKCGTEMSRMGDWAALN*VCTAAS
Trigger: GCTGGCTGCAGTGCAGACCCAGTTGAGGGCCGCCCA...GTCTCCCATTCTTGACATCTCTGTACCACACTTTACAGACATAAAGGGATCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR CCA 90 bp AGGCAGGCAGGCAGGCAGGCAGTCCTCTGTCTCACAATGGGGAAAAGCAGAGCTAGAAATTCTGGATTCTaGACTCAGGAACTAGGGGAA +
Preference number: 4 (lower is better)
Translates to: RQAGRQAVLCLTMGKSRARNSGF*TQELGE
Trigger: TTCCCCTAGTTCCTGAGTCCAGAATCCAGAATTTCT...AGCTCTGCTTTTCCCCATTGTGAGACAGAGGACTGCCTGCCTGCCTGCCTGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR GCA 90 bp AGAGATCCCTTTATGTCTGTAAAGTGTGGTACAGAGATGTCAAGAATGGGAGACCAACTGGGTCTGCACTaGAGCCAGCTTGTGCCGCAG +
Preference number: 4 (lower is better)
Translates to: RDPFMSVKCGTEMSRMGDQLGLH*SQLVPQ
Trigger: CTGCGGCACAAGCTGGCTGCAGTGCAGACCCAGTTG...GTCTCCCATTCTTGACATCTCTGTACCACACTTTACAGACATAAAGGGATCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR CCA 90 bp ACATCCTCATTTGAGGTCACACATCCACACACAGTTAGCTGGAATCCAGAGTTATTCACAGGCTGCAGGTaGGGTTGCTGTGGGGTCTCT +
Preference number: 4 (lower is better)
Translates to: TSSFEVTHPHTVSWNPELFTGCR*GCCGVS
Trigger: AGAGACCCCACAGCAACCCCACCTGCAGCCTGTGAA...TAACTCTGGATTCCAGCTAACTGTGTGTGGATGTGTGACCTCAAATGAGGATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
3UTR CAA 72 bp TACAGGCGAGGTTTAAGTGGGGAGCCACATCCTCATTaGAGGTCACACATCCACACACAGTTAGCTGGAATC +
Preference number: 4 (lower is better)
Translates to: YRRGLSGEPHPH*RSHIHTQLAGI
Trigger: GATTCCAGCTAACTGTGTGTGGATGTGTGACCTCAAATGAGGATGTGGCTCCCCACTTAAACCTCGCCTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR GCA 90 bp TATGTCTGTAAAGTGTGGTACAGAGATGTCAAGAATGGGAGACAGGCTGACGTTACTGCAGCCAGCTTGTaGCGCAGCTCAGAGTTGATC +
Preference number: 4 (lower is better)
Translates to: YVCKVWYRDVKNGRQADVTAASL*RSSELI
Trigger: GATCAACTCTGAGCTGCGGCACAAGCTGGCTGCAGT...AACGTCAGCCTGTCTCCCATTCTTGACATCTCTGTACCACACTTTACAGACATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR CCA 90 bp TATGTCTGTAAAGTGTGGTACAGAGATGTCAAGAATGGGAGACAGGCTGACGTTCAGGTGGGGTTGCTGTaGGGTCTCTTCTCCTTTCTG +
Preference number: 4 (lower is better)
Translates to: YVCKVWYRDVKNGRQADVQVGLL*GLFSFL
Trigger: CAGAAAGGAGAAGAGACCCCACAGCAACCCCACCTG...AACGTCAGCCTGTCTCCCATTCTTGACATCTCTGTACCACACTTTACAGACATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR CCA 90 bp TTATGGTTATTTATTGCACTGGTCACCTGCACAAGCCCCAGCGAGGCAGGCAGGAAGCCAAAGAAATTCTaGATTCTGGACTCAGGAACT +
Preference number: 4 (lower is better)
Translates to: LWLFIALVTCTSPSEAGRKPKKF*ILDSGT
Trigger: AGTTCCTGAGTCCAGAATCCAGAATTTCTTTGGCTT...CCTGCCTGCCTCGCTGGGGCTTGTGCAGGTGACCAGTGCAATAAATAACCATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR TCA 90 bp GCTCAGAGATCCCTTTATGTCTGTAAAGTGTGGTACAGAGATGTCAAGAATGGGAGAACACGTTGGCTTTaGGCTCATTCCGCTCCTGAA +
Preference number: 4 (lower is better)
Translates to: AQRSLYVCKVWYRDVKNGRTRWL*AHSAPE
Trigger: TTCAGGAGCGGAATGAGCTCAAAGCCAACGTGTTCT...CCCATTCTTGACATCTCTGTACCACACTTTACAGACATAAAGGGATCTCTGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR TCA 90 bp ACATCCTCATTTGAGGTCACACATCCACACACAGTTAGCTGGAATCCAGAGTTATCCTCCTCTGTTTCTTaGCTGCCACCTTCATGGCTT +
Preference number: 4 (lower is better)
Translates to: TSSFEVTHPHTVSWNPELSSSVS*LPPSWL
Trigger: AAGCCATGAAGGTGGCAGTCAAGAAACAGAGGAGGA...TAACTCTGGATTCCAGCTAACTGTGTGTGGATGTGTGACCTCAAATGAGGATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR TCA 90 bp GCTCAGAGATCCCTTTATGTCTGTAAAGTGTGGTACAGAGATGTCAAGAATGGGAGCTCATTCCGCTCCTaGAGGATTTGCTTAAGCTCT +
Preference number: 4 (lower is better)
Translates to: AQRSLYVCKVWYRDVKNGSSFRS*RICLSS
Trigger: AGAGCTTAAGCAAATCCTTCAGGAGCGGAATGAGCT...CCCATTCTTGACATCTCTGTACCACACTTTACAGACATAAAGGGATCTCTGAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR GCA 90 bp AAAGCAGAGCTCAGAGATCCCTTTATGTCTGTAAAGTGTGGTACAGAGATGTCACATCCTCATCCTCACTaGTCTCTGCTTCTTCAGGTG +
Preference number: 4 (lower is better)
Translates to: KAELRDPFMSVKCGTEMSHPHPH*SLLLQV
Trigger: CACCTGAAGAAGCAGAGAGCAGTGAGGATGAGGATG...TGACATCTCTGTACCACACTTTACAGACATAAAGGGATCTCTGAGCTCTGCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS CCA 90 bp TGTCGGAGCAGCGCGCGCTCCTCCTGCGGCCCGGAGCCTAGCTCCTaGCGGAGGCGTTGGTTCTCCTCGCGCAGCCGCCGCAGCTCCACT +
Preference number: 5 (lower is better)
Translates to: CRSSARSSCGPEPSS*RRRWFSSRSRRSST
Trigger: AGTGGAGCTGCGGCGGCTGCGCGAGGAGAACCAACGCCTCCGCCAGGAGCTAGGCTCCGGGCCGCAGGAGGAGCGCGCGCTGCTCCGACA
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS GCA 90 bp CCGCCGCGTCGGGTCCGAAGCGGCGTGCCAGCCCCTGTAGCTCAGTaGCCAGAGCCCCCGCTAGATGGTACACGAGCTCGGCGGCTGACC +
Preference number: 5 (lower is better)
Translates to: PPRRVRSGVPAPVAQ*PEPPLDGTRARRLT
Trigger: GGTCAGCCGCCGAGCTCGTGTACCATCTAGCGGGGGCTCTGGGCACTGAGCTACAGGGGCTGGCACGCCGCTTCGGACCCGACGCGGCGG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS CCA 90 bp GCGCGCTCCTCCTGCGGCCCGGAGCCTAGCTCCTGGCGGAGGCGTTaGTTCTCCTCGCGCAGCCGCCGCAGCTCCACTTCTGCCTGCTGT +
Preference number: 5 (lower is better)
Translates to: ARSSCGPEPSSWRRR*FSSRSRRSSTSACC
Trigger: ACAGCAGGCAGAAGTGGAGCTGCGGCGGCTGCGCGAGGAGAACCAACGCCTCCGCCAGGAGCTAGGCTCCGGGCCGCAGGAGGAGCGCGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS GCA 90 bp CTGTCTGTCACCTCCTTGAGCTGTCGGAGCAGCGCGCGCTCCTCCTaGGGCCCGGAGCCTAGCTCCTGGCGGAGGCGTTGGTTCTCCTCG +
Preference number: 5 (lower is better)
Translates to: LSVTSLSCRSSARSS*GPEPSSWRRRWFSS
Trigger: CGAGGAGAACCAACGCCTCCGCCAGGAGCTAGGCTCCGGGCCGCAGGAGGAGCGCGCGCTGCTCCGACAGCTCAAGGAGGTGACAGACAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS GCA 90 bp GCGCTCCCTCTCCCGGTCCTGGGCGGCCCTCAACTGGGTCTGCACTaGAGCCAGCTTGTGCCGCAGCTCAGAGTTGATCAGCAGGAGGCG +
Preference number: 5 (lower is better)
Translates to: ALPLPVLGGPQLGLH*SQLVPQLRVDQQEA
Trigger: CGCCTCCTGCTGATCAACTCTGAGCTGCGGCACAAGCTGGCTGCAGTGCAGACCCAGTTGAGGGCCGCCCAGGACCGGGAGAGGGAGCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS CCA 90 bp CGGCGTGCCAGCCCCTGTAGCTCAGTGCCCAGAGCCCCCGCTAGATaGTACACGAGCTCGGCGGCTGACCCTGCGCCCACTGAAGAAGAG +
Preference number: 5 (lower is better)
Translates to: RRASPCSSVPRAPAR*YTSSAADPAPTEEE
Trigger: CTCTTCTTCAGTGGGCGCAGGGTCAGCCGCCGAGCTCGTGTACCATCTAGCGGGGGCTCTGGGCACTGAGCTACAGGGGCTGGCACGCCG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS TCA 90 bp GGTTGTGTGCCCGAAGCTCATCCCGCTGTCTGTCTGTCACCTCCTTaGGCTGTCGGAGCAGCGCGCGCTCCTCCTGCGGCCCGGAGCCTA +
Preference number: 5 (lower is better)
Translates to: GCVPEAHPAVCLSPP*AVGAARAPPAARSL
Trigger: TAGGCTCCGGGCCGCAGGAGGAGCGCGCGCTGCTCCGACAGCTCAAGGAGGTGACAGACAGACAGCGGGATGAGCTTCGGGCACACAACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS GCA 90 bp ATCTGGCGCTCCCTCTCCCGGTCCTGGGCGGCCCTCAACTGGGTCTaGACTGCAGCCAGCTTGTGCCGCAGCTCAGAGTTGATCAGCAGG +
Preference number: 5 (lower is better)
Translates to: IWRSLSRSWAALNWV*TAASLCRSSELISR
Trigger: CCTGCTGATCAACTCTGAGCTGCGGCACAAGCTGGCTGCAGTGCAGACCCAGTTGAGGGCCGCCCAGGACCGGGAGAGGGAGCGCCAGAT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS GCA 90 bp CAGCGCTTCGGTCTCTTGGCTTCGGCGCTGCAGATCTCGGTTGTGTaGCCGAAGCTCATCCCGCTGTCTGTCTGTCACCTCCTTGAGCTG +
Preference number: 5 (lower is better)
Translates to: QRFGLLASALQISVV*PKLIPLSVCHLLEL
Trigger: CAGCTCAAGGAGGTGACAGACAGACAGCGGGATGAGCTTCGGGCACACAACCGAGATCTGCAGCGCCGAAGCCAAGAGACCGAAGCGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS GCA 90 bp TGCCGCAGCTCAGAGTTGATCAGCAGGAGGCGCTGTAGCTGTTCCTaGAGCGCTTCGGTCTCTTGGCTTCGGCGCTGCAGATCTCGGTTG +
Preference number: 5 (lower is better)
Translates to: CRSSELISRRRCSCS*SASVSWLRRCRSRL
Trigger: CAACCGAGATCTGCAGCGCCGAAGCCAAGAGACCGAAGCGCTGCAGGAACAGCTACAGCGCCTCCTGCTGATCAACTCTGAGCTGCGGCA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS CCA 90 bp ATCAGCAGGAGGCGCTGTAGCTGTTCCTGCAGCGCTTCGGTCTCTTaGCTTCGGCGCTGCAGATCTCGGTTGTGTGCCCGAAGCTCATCC +
Preference number: 5 (lower is better)
Translates to: ISRRRCSCSCSASVS*LRRCRSRLCARSSS
Trigger: GGATGAGCTTCGGGCACACAACCGAGATCTGCAGCGCCGAAGCCAAGAGACCGAAGCGCTGCAGGAACAGCTACAGCGCCTCCTGCTGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR CAA 90 bp CAGGCAGGCAGGCAGGCAGTCCTCTGTCTCACAATGGGGAAAAGCAGAGCTCAGTGCCGCAGCTCAGAGTaGATCAGCAGGAGGCGCTGT +
Preference number: 5 (lower is better)
Translates to: QAGRQAVLCLTMGKSRAQCRSSE*ISRRRC
Trigger: ACAGCGCCTCCTGCTGATCAACTCTGAGCTGCGGCA...CTGAGCTCTGCTTTTCCCCATTGTGAGACAGAGGACTGCCTGCCTGCCTGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR CAA 90 bp GGCAGGCAGGCAGGCAGTCCTCTGTCTCACAATGGGGAAAAGCAGAGCTCAGAGACATCTTCCTTGTCGTaGGAGAGCAGGAGCCACGAG +
Preference number: 5 (lower is better)
Translates to: GRQAGSPLSHNGEKQSSETSSLS*ESRSHE
Trigger: CTCGTGGCTCCTGCTCTCCAACGACAAGGAAGATGT...CTCTGAGCTCTGCTTTTCCCCATTGTGAGACAGAGGACTGCCTGCCTGCCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR CAA 90 bp AGGCAGGCAGTCCTCTGTCTCACAATGGGGAAAAGCAGAGCTCAGAGATCCCTTAGGCTGCAGGTGGGGTaGCTGTGGGGTCTCTTCTCC +
Preference number: 5 (lower is better)
Translates to: RQAVLCLTMGKSRAQRSLRLQVG*LWGLFS
Trigger: GGAGAAGAGACCCCACAGCAACCCCACCTGCAGCCT...AAGGGATCTCTGAGCTCTGCTTTTCCCCATTGTGAGACAGAGGACTGCCTGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR CAA 90 bp GGCAGGCAGGCAGGCAGTCCTCTGTCTCACAATGGGGAAAAGCAGAGCTCAGAGGGTGTCCCTAACATCTaGGCCTTGATCTTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: GRQAGSPLSHNGEKQSSEGVPNI*ALIFLL
Trigger: GAGGAGGAAGATCAAGGCCAAGATGTTAGGGACACC...CTCTGAGCTCTGCTTTTCCCCATTGTGAGACAGAGGACTGCCTGCCTGCCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS TCA 90 bp CTGAATCCACACTGGACAGCTTCTGGAAGGTTCCCTGGCTGCTTCTaGGTATCCACCGGGTCATCTGAGGTTGCCGCATCAGGTTCCAAG +
Preference number: 5 (lower is better)
Translates to: LNPHWTASGRFPGCF*VSTGSSEVAASGSK
Trigger: CTTGGAACCTGATGCGGCAACCTCAGATGACCCGGTGGATACTCAGAAGCAGCCAGGGAACCTTCCAGAAGCTGTCCAGTGTGGATTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS TCA 90 bp TTGACTGCCACCTTCATGGCTTCAAGCAGAAGCCCAGGAACACGGTaGTCTGTGAGCAGCTCTCGCTGGAAGTACGCCAACTCCTCCTTG +
Preference number: 5 (lower is better)
Translates to: LTATFMASSRSPGTR*SVSSSRWKYANSSL
Trigger: CAAGGAGGAGTTGGCGTACTTCCAGCGAGAGCTGCTCACAGATCACCGTGTTCCTGGGCTTCTGCTTGAAGCCATGAAGGTGGCAGTCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR CAA 90 bp CAGGCAGGCAGGCAGGCAGTCCTCTGTCTCACAATGGGGAAAAGCAGAGCTCAGTTGAGCAAGAACACGTaGGCTTTGAGCTCATTCCGC +
Preference number: 5 (lower is better)
Translates to: QAGRQAVLCLTMGKSRAQLSKNT*ALSSFR
Trigger: GCGGAATGAGCTCAAAGCCAACGTGTTCTTGCTCAA...CTGAGCTCTGCTTTTCCCCATTGTGAGACAGAGGACTGCCTGCCTGCCTGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR CAA 90 bp GCAGGCAGGCAGTCCTCTGTCTCACAATGGGGAAAAGCAGAGCTCAGAGATCCCTACGCCAACTCCTCCTaGAGCAAGAACACGTTGGCT +
Preference number: 5 (lower is better)
Translates to: AGRQSSVSQWGKAELRDPYANSS*SKNTLA
Trigger: AGCCAACGTGTTCTTGCTCAAGGAGGAGTTGGCGTA...GGGATCTCTGAGCTCTGCTTTTCCCCATTGTGAGACAGAGGACTGCCTGCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS-3UTR CAA 90 bp AGAGCTCAGAGATCCCTTTATGTCTGTAAAGTGTGGTACAGAGATGTCAAGAATCTGCTGGAAGCTGGGTaGCTGGTCTCGGCTTCAGGG +
Preference number: 5 (lower is better)
Translates to: RAQRSLYVCKVWYRDVKNLLEAG*LVSASG
Trigger: CCCTGAAGCCGAGACCAGCAACCCAGCTTCCAGCAG...ATTCTTGACATCTCTGTACCACACTTTACAGACATAAAGGGATCTCTGAGCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS CCA 90 bp CCTCAGTTTCACCCCGATACCATAAGCCAAAGAAATTCTGGATTCTaGACTCAGGAACTAGGGGAACATCTTCCTTGTCGTTGGAGAGCA +
Preference number: 5 (lower is better)
Translates to: PQFHPDTISQRNSGF*TQELGEHLPCRWRA
Trigger: TGCTCTCCAACGACAAGGAAGATGTTCCCCTAGTTCCTGAGTCCAGAATCCAGAATTTCTTTGGCTTATGGTATCGGGGTGAAACTGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS CCA 72 bp AGCGCGCGCTCCTCCTGCGGCCCGGAGCCTAGCTCCTaGCGGAGGCGTTGGTTCTCCTCGCGCAGCCGCCGC +
Preference number: 6 (lower is better)
Translates to: SARSSCGPEPSS*RRRWFSSRSRR
Trigger: GCGGCGGCTGCGCGAGGAGAACCAACGCCTCCGCCAGGAGCTAGGCTCCGGGCCGCAGGAGGAGCGCGCGCT
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS GCA 72 bp ACCTCCTTGAGCTGTCGGAGCAGCGCGCGCTCCTCCTaGGGCCCGGAGCCTAGCTCCTGGCGGAGGCGTTGG +
Preference number: 6 (lower is better)
Translates to: TSLSCRSSARSS*GPEPSSWRRRW
Trigger: CCAACGCCTCCGCCAGGAGCTAGGCTCCGGGCCGCAGGAGGAGCGCGCGCTGCTCCGACAGCTCAAGGAGGT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS GCA 72 bp TTCTCCTCGCGCAGCCGCCGCAGCTCCACTTCTGCCTaGTGTGCGGACACCTGCAGCGAGTCCGGAGCCGGC +
Preference number: 6 (lower is better)
Translates to: FSSRSRRSSTSA*CADTCSESGAG
Trigger: GCCGGCTCCGGACTCGCTGCAGGTGTCCGCACAGCAGGCAGAAGTGGAGCTGCGGCGGCTGCGCGAGGAGAA
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS GCA 72 bp CGGGTCCGAAGCGGCGTGCCAGCCCCTGTAGCTCAGTaGCCAGAGCCCCCGCTAGATGGTACACGAGCTCGG +
Preference number: 6 (lower is better)
Translates to: RVRSGVPAPVAQ*PEPPLDGTRAR
Trigger: CCGAGCTCGTGTACCATCTAGCGGGGGCTCTGGGCACTGAGCTACAGGGGCTGGCACGCCGCTTCGGACCCG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS CAA 90 bp CGGTTGTGTGCCCGAAGCTCATCCCGCTGTCTGTCTGTCACCTCCTaGAGCTGTCGGAGCAGCGCGCGCTCCTCCTGCGGCCCGGAGCCT +
Preference number: 6 (lower is better)
Translates to: RLCARSSSRCLSVTS*SCRSSARSSCGPEP
Trigger: AGGCTCCGGGCCGCAGGAGGAGCGCGCGCTGCTCCGACAGCTCAAGGAGGTGACAGACAGACAGCGGGATGAGCTTCGGGCACACAACCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS CCA 72 bp AGCCCCTGTAGCTCAGTGCCCAGAGCCCCCGCTAGATaGTACACGAGCTCGGCGGCTGACCCTGCGCCCACT +
Preference number: 6 (lower is better)
Translates to: SPCSSVPRAPAR*YTSSAADPAPT
Trigger: AGTGGGCGCAGGGTCAGCCGCCGAGCTCGTGTACCATCTAGCGGGGGCTCTGGGCACTGAGCTACAGGGGCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS GCA 72 bp TCCCTCTCCCGGTCCTGGGCGGCCCTCAACTGGGTCTaGACTGCAGCCAGCTTGTGCCGCAGCTCAGAGTTG +
Preference number: 6 (lower is better)
Translates to: SLSRSWAALNWV*TAASLCRSSEL
Trigger: CAACTCTGAGCTGCGGCACAAGCTGGCTGCAGTGCAGACCCAGTTGAGGGCCGCCCAGGACCGGGAGAGGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS GCA 72 bp CTCCCGGTCCTGGGCGGCCCTCAACTGGGTCTGCACTaGAGCCAGCTTGTGCCGCAGCTCAGAGTTGATCAG +
Preference number: 6 (lower is better)
Translates to: LPVLGGPQLGLH*SQLVPQLRVDQ
Trigger: CTGATCAACTCTGAGCTGCGGCACAAGCTGGCTGCAGTGCAGACCCAGTTGAGGGCCGCCCAGGACCGGGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS GCA 72 bp TGTTCCTGCAGCGCTTCGGTCTCTTGGCTTCGGCGCTaGAGATCTCGGTTGTGTGCCCGAAGCTCATCCCGC +
Preference number: 6 (lower is better)
Translates to: CSCSASVSWLRR*RSRLCARSSSR
Trigger: GCGGGATGAGCTTCGGGCACACAACCGAGATCTGCAGCGCCGAAGCCAAGAGACCGAAGCGCTGCAGGAACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS GCA 72 bp GGTCTCTTGGCTTCGGCGCTGCAGATCTCGGTTGTGTaGCCGAAGCTCATCCCGCTGTCTGTCTGTCACCTC +
Preference number: 6 (lower is better)
Translates to: GLLASALQISVV*PKLIPLSVCHL
Trigger: GAGGTGACAGACAGACAGCGGGATGAGCTTCGGGCACACAACCGAGATCTGCAGCGCCGAAGCCAAGAGACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS GCA 72 bp GGGGTTGCTGTGGGGTCTCTTCTCCTTTCTGTAGGCTaGTGGAAGCTGGGTTGCTGGTCTCGGCTTCAGGGG +
Preference number: 6 (lower is better)
Translates to: GVAVGSLLLSVG*WKLGCWSRLQG
Trigger: CCCCTGAAGCCGAGACCAGCAACCCAGCTTCCAGCAGCCTACAGAAAGGAGAAGAGACCCCACAGCAACCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS CAA 72 bp GCTTCGGTCTCTTGGCTTCGGCGCTGCAGATCTCGGTaGTGTGCCCGAAGCTCATCCCGCTGTCTGTCTGTC +
Preference number: 6 (lower is better)
Translates to: ASVSWLRRCRSR*CARSSSRCLSV
Trigger: GACAGACAGACAGCGGGATGAGCTTCGGGCACACAACCGAGATCTGCAGCGCCGAAGCCAAGAGACCGAAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS CAA 72 bp GTCTGCACTGCAGCCAGCTTGTGCCGCAGCTCAGAGTaGATCAGCAGGAGGCGCTGTAGCTGTTCCTGCAGC +
Preference number: 6 (lower is better)
Translates to: VCTAASLCRSSE*ISRRRCSCSCS
Trigger: GCTGCAGGAACAGCTACAGCGCCTCCTGCTGATCAACTCTGAGCTGCGGCACAAGCTGGCTGCAGTGCAGAC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS GCA 72 bp TCAGAGTTGATCAGCAGGAGGCGCTGTAGCTGTTCCTaGAGCGCTTCGGTCTCTTGGCTTCGGCGCTGCAGA +
Preference number: 6 (lower is better)
Translates to: SELISRRRCSCS*SASVSWLRRCR
Trigger: TCTGCAGCGCCGAAGCCAAGAGACCGAAGCGCTGCAGGAACAGCTACAGCGCCTCCTGCTGATCAACTCTGA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS GCA 72 bp TCTCTTCTCCTTTCTGTAGGCTGCTGGAAGCTGGGTTaGTGGTCTCGGCTTCAGGGGCCTCAGTTTCACCCC +
Preference number: 6 (lower is better)
Translates to: SLLLSVGCWKLG*WSRLQGPQFHP
Trigger: GGGGTGAAACTGAGGCCCCTGAAGCCGAGACCAGCAACCCAGCTTCCAGCAGCCTACAGAAAGGAGAAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS CCA 72 bp CTTCTCCTTTCTGTAGGCTGCTGGAAGCTGGGTTGCTaGTCTCGGCTTCAGGGGCCTCAGTTTCACCCCGAT +
Preference number: 6 (lower is better)
Translates to: LLLSVGCWKLGC*SRLQGPQFHPD
Trigger: ATCGGGGTGAAACTGAGGCCCCTGAAGCCGAGACCAGCAACCCAGCTTCCAGCAGCCTACAGAAAGGAGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS TCA 72 bp CACTGGACAGCTTCTGGAAGGTTCCCTGGCTGCTTCTaGGTATCCACCGGGTCATCTGAGGTTGCCGCATCA +
Preference number: 6 (lower is better)
Translates to: HWTASGRFPGCF*VSTGSSEVAAS
Trigger: TGATGCGGCAACCTCAGATGACCCGGTGGATACTCAGAAGCAGCCAGGGAACCTTCCAGAAGCTGTCCAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS TCA 72 bp ACCTTCATGGCTTCAAGCAGAAGCCCAGGAACACGGTaGTCTGTGAGCAGCTCTCGCTGGAAGTACGCCAAC +
Preference number: 6 (lower is better)
Translates to: TFMASSRSPGTR*SVSSSRWKYAN
Trigger: GTTGGCGTACTTCCAGCGAGAGCTGCTCACAGATCACCGTGTTCCTGGGCTTCTGCTTGAAGCCATGAAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS CCA 72 bp AAGCTCTTCCCTGCTGAATCCACACTGGACAGCTTCTaGAAGGTTCCCTGGCTGCTTCTGAGTATCCACCGG +
Preference number: 6 (lower is better)
Translates to: KLFPAESTLDSF*KVPWLLLSIHR
Trigger: CCGGTGGATACTCAGAAGCAGCCAGGGAACCTTCCAGAAGCTGTCCAGTGTGGATTCAGCAGGGAAGAGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS CAA 72 bp TGGATTCTGGACTCAGGAACTAGGGGAACATCTTCCTaGTCGTTGGAGAGCAGGAGCCACGAGCCATCCTCA +
Preference number: 6 (lower is better)
Translates to: WILDSGTRGTSS*SLESRSHEPSS
Trigger: TGAGGATGGCTCGTGGCTCCTGCTCTCCAACGACAAGGAAGATGTTCCCCTAGTTCCTGAGTCCAGAATCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS CAA 90 bp TCAGGTGTCCCTAACATCTTGGCCTTGATCTTCCTCCTCTGTTTCTaGACTGCCACCTTCATGGCTTCAAGCAGAAGCCCAGGAACACGG +
Preference number: 6 (lower is better)
Translates to: SGVPNILALIFLLCF*TATFMASSRSPGTR
Trigger: CCGTGTTCCTGGGCTTCTGCTTGAAGCCATGAAGGTGGCAGTCAAGAAACAGAGGAGGAAGATCAAGGCCAAGATGTTAGGGACACCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS CAA 90 bp AAGAAATTCTGGATTCTGGACTCAGGAACTAGGGGAACATCTTCCTaGTCGTTGGAGAGCAGGAGCCACGAGCCATCCTCATCCTCACTG +
Preference number: 6 (lower is better)
Translates to: KKFWILDSGTRGTSS*SLESRSHEPSSSSL
Trigger: CAGTGAGGATGAGGATGGCTCGTGGCTCCTGCTCTCCAACGACAAGGAAGATGTTCCCCTAGTTCCTGAGTCCAGAATCCAGAATTTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS CAA 72 bp CCTAACATCTTGGCCTTGATCTTCCTCCTCTGTTTCTaGACTGCCACCTTCATGGCTTCAAGCAGAAGCCCA +
Preference number: 6 (lower is better)
Translates to: PNILALIFLLCF*TATFMASSRSP
Trigger: TGGGCTTCTGCTTGAAGCCATGAAGGTGGCAGTCAAGAAACAGAGGAGGAAGATCAAGGCCAAGATGTTAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS CAA 72 bp TCACTGCTCTCTGCTTCTTCAGGTGTCCCTAACATCTaGGCCTTGATCTTCCTCCTCTGTTTCTTGACTGCC +
Preference number: 6 (lower is better)
Translates to: SLLSASSGVPNI*ALIFLLCFLTA
Trigger: GGCAGTCAAGAAACAGAGGAGGAAGATCAAGGCCAAGATGTTAGGGACACCTGAAGAAGCAGAGAGCAGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7
CDS CCA 72 bp CACCCCGATACCATAAGCCAAAGAAATTCTGGATTCTaGACTCAGGAACTAGGGGAACATCTTCCTTGTCGT +
Preference number: 6 (lower is better)
Translates to: HPDTISQRNSGF*TQELGEHLPCR
Trigger: ACGACAAGGAAGATGTTCCCCTAGTTCCTGAGTCCAGAATCCAGAATTTCTTTGGCTTATGGTATCGGGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042972.7