Pregenerated sensors for RIIAD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028139Ensembl transcript IDs: ENSMUST00000029785.4
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CACACAGCTTGGAAATCCACACTGGTGGCAATGCTGCTCTCAGGGCTCCAGATGAAGCTTGATTCCTTCTaGCTTCTCCCAGCAGCTGAG | + |
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Preference number: 2 (lower is better) Translates to: HTAWKSTLVAMLLSGLQMKLDSF*LLPAAE Trigger: CTCAGCTGCTGGGAGAAGCCAGAAGGAATCAAGCTT...CATCTGGAGCCCTGAGAGCAGCATTGCCACCAGTGTGGATTTCCAAGCTGTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| 3UTR TCA 72 bp | CCACACTGGTGGCAATGCTGCTCTCAGGGCTCCAGATaGCCCCAAAGCTTGATTCCTTCTGGCTTCTCCCAG | + |
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Preference number: 3 (lower is better) Translates to: PHWWQCCSQGSR*PQSLIPSGFSQ Trigger: CTGGGAGAAGCCAGAAGGAATCAAGCTTTGGGGTCATCTGGAGCCCTGAGAGCAGCATTGCCACCAGTGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS-3UTR CCA 90 bp | GCCCACACAGCTTGGAAATCCACACTGGTGGCAATGCTGCTCTCAGGGCTCCAGTTCTTCTCTTCCCTCTaGCGCAGAAGCCGAGCATTC | + |
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Preference number: 4 (lower is better) Translates to: AHTAWKSTLVAMLLSGLQFFSSL*RRSRAF Trigger: GAATGCTCGGCTTCTGCGCCAGAGGGAAGAGAAGAA...CTGGAGCCCTGAGAGCAGCATTGCCACCAGTGTGGATTTCCAAGCTGTGTGGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS-3UTR CCA 90 bp | GCCCACACAGCTTGGAAATCCACACTGGTGGCAATGCTGCTCTCAGGGCTCCAGCTATCCCATGGCCTCTaGTCTCCATCAAGCACACTC | + |
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Preference number: 4 (lower is better) Translates to: AHTAWKSTLVAMLLSGLQLSHGL*SPSSTL Trigger: GAGTGTGCTTGATGGAGACCAGAGGCCATGGGATAG...CTGGAGCCCTGAGAGCAGCATTGCCACCAGTGTGGATTTCCAAGCTGTGTGGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS-3UTR CCA 90 bp | ATAGGAGAAGGCCCACACAGCTTGGAAATCCACACTGGTGGCAATGCTGCTCTCGGCCCCACTATCCCATaGCCTCTGGTCTCCATCAAG | + |
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Preference number: 4 (lower is better) Translates to: IGEGPHSLEIHTGGNAALGPTIP*PLVSIK Trigger: CTTGATGGAGACCAGAGGCCATGGGATAGTGGGGCC...GAGAGCAGCATTGCCACCAGTGTGGATTTCCAAGCTGTGTGGGCCTTCTCCTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS-3UTR GCA 90 bp | GCAATGCTGCTCTCAGGGCTCCAGATGACCCCAAAGCTTGATTCCTTCTGGCTTGCTGCATGTGAATTCTaGTGGGAAGTCTTGGATCCG | + |
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Preference number: 4 (lower is better) Translates to: AMLLSGLQMTPKLDSFWLAACEF*WEVLDP Trigger: CGGATCCAAGACTTCCCAGCAGAATTCACATGCAGC...AAGCCAGAAGGAATCAAGCTTTGGGGTCATCTGGAGCCCTGAGAGCAGCATTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS-3UTR CCA 90 bp | TGGAAATCCACACTGGTGGCAATGCTGCTCTCAGGGCTCCAGATGACCCCAAAGTCTGCTGGGAAGTCTTaGATCCGTGAAATAGTGTGC | + |
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Preference number: 4 (lower is better) Translates to: WKSTLVAMLLSGLQMTPKSAGKS*IREIVC Trigger: GCACACTATTTCACGGATCCAAGACTTCCCAGCAGA...CTTTGGGGTCATCTGGAGCCCTGAGAGCAGCATTGCCACCAGTGTGGATTTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS-3UTR TCA 90 bp | GGCCCACACAGCTTGGAAATCCACACTGGTGGCAATGCTGCTCTCAGGGCTCCATTAATTAGCTGCATGTaGATTCTGCTGGGAAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: GPHSLEIHTGGNAALRAPLISCM*ILLGSL Trigger: AAGACTTCCCAGCAGAATTCACATGCAGCTAATTAA...TGGAGCCCTGAGAGCAGCATTGCCACCAGTGTGGATTTCCAAGCTGTGTGGGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS-3UTR CCA 90 bp | AGCTTGGAAATCCACACTGGTGGCAATGCTGCTCTCAGGGCTCCAGATGACCCCAGAGACACCTCTTTGTaGGTTCTCAAGTACTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: SLEIHTGGNAALRAPDDPRDTSL*VLKYFS Trigger: TGAAAAGTACTTGAGAACCCACAAAGAGGTGTCTCT...GGGGTCATCTGGAGCCCTGAGAGCAGCATTGCCACCAGTGTGGATTTCCAAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS GCA 90 bp | TACTTTTCATTTGCGATCCGAGTCTGGATCTTGAAATCTCGCAACTaGTCCAGTTGCTCCGGGTTCAGCGTTCCGGGATCCGGCCCCACT | + |
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Preference number: 5 (lower is better) Translates to: YFSFAIRVWILKSRN*SSCSGFSVPGSGPT Trigger: AGTGGGGCCGGATCCCGGAACGCTGAACCCGGAGCAACTGGAGCAGTTGCGAGATTTCAAGATCCAGACTCGGATCGCAAATGAAAAGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS-3UTR CAA 90 bp | GGCCCACACAGCTTGGAAATCCACACTGGTGGCAATGCTGCTCTCAGGGCTCCATCAAGTACTTTTCATTaGCGATCCGAGTCTGGATCT | + |
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Preference number: 5 (lower is better) Translates to: GPHSLEIHTGGNAALRAPSSTFH*RSESGS Trigger: AGATCCAGACTCGGATCGCAAATGAAAAGTACTTGA...TGGAGCCCTGAGAGCAGCATTGCCACCAGTGTGGATTTCCAAGCTGTGTGGGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS TCA 90 bp | TGTGGGTTCTCAAGTACTTTTCATTTGCGATCCGAGTCTGGATCTTaGAATCTCGCAACTGCTCCAGTTGCTCCGGGTTCAGCGTTCCGG | + |
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Preference number: 5 (lower is better) Translates to: CGFSSTFHLRSESGS*NLATAPVAPGSAFR Trigger: CCGGAACGCTGAACCCGGAGCAACTGGAGCAGTTGCGAGATTTCAAGATCCAGACTCGGATCGCAAATGAAAAGTACTTGAGAACCCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS-3UTR CAA 90 bp | GCAATGCTGCTCTCAGGGCTCCAGATGACCCCAAAGCTTGATTCCTTCTGGCTTAGCAGAGACACCTCTTaGTGGGTTCTCAAGTACTTT | + |
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Preference number: 5 (lower is better) Translates to: AMLLSGLQMTPKLDSFWLSRDTS*WVLKYF Trigger: AAAGTACTTGAGAACCCACAAAGAGGTGTCTCTGCT...AAGCCAGAAGGAATCAAGCTTTGGGGTCATCTGGAGCCCTGAGAGCAGCATTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS CCA 90 bp | ACCTCTTTGTGGGTTCTCAAGTACTTTTCATTTGCGATCCGAGTCTaGATCTTGAAATCTCGCAACTGCTCCAGTTGCTCCGGGTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: TSLWVLKYFSFAIRV*ILKSRNCSSCSGFS Trigger: GCTGAACCCGGAGCAACTGGAGCAGTTGCGAGATTTCAAGATCCAGACTCGGATCGCAAATGAAAAGTACTTGAGAACCCACAAAGAGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS CCA 90 bp | AACATTTCTCTGAAGAAGCCGCTGATGAGCAGAGACACCTCTTTGTaGGTTCTCAAGTACTTTTCATTTGCGATCCGAGTCTGGATCTTG | + |
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Preference number: 5 (lower is better) Translates to: NISLKKPLMSRDTSL*VLKYFSFAIRVWIL Trigger: CAAGATCCAGACTCGGATCGCAAATGAAAAGTACTTGAGAACCCACAAAGAGGTGTCTCTGCTCATCAGCGGCTTCTTCAGAGAAATGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS GCA 90 bp | CTGCATGTGAATTCTGCTGGGAAGTCTTGGATCCGTGAAATAGTGTaGAGCAAATTCAAGAATGTTGTCCGGTCTTTTCAGAAACATTTC | + |
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Preference number: 5 (lower is better) Translates to: LHVNSAGKSWIREIV*SKFKNVVRSFQKHF Trigger: GAAATGTTTCTGAAAAGACCGGACAACATTCTTGAATTTGCTGCACACTATTTCACGGATCCAAGACTTCCCAGCAGAATTCACATGCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS CCA 72 bp | GCGTTCCGGGATCCGGCCCCACTATCCCATGGCCTCTaGTCTCCATCAAGCACACTCGGTTGTTGTGCTTGC | + |
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Preference number: 6 (lower is better) Translates to: AFRDPAPLSHGL*SPSSTLGCCAC Trigger: GCAAGCACAACAACCGAGTGTGCTTGATGGAGACCAGAGGCCATGGGATAGTGGGGCCGGATCCCGGAACGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS GCA 72 bp | TTTGCGATCCGAGTCTGGATCTTGAAATCTCGCAACTaGTCCAGTTGCTCCGGGTTCAGCGTTCCGGGATCC | + |
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Preference number: 6 (lower is better) Translates to: FAIRVWILKSRN*SSCSGFSVPGS Trigger: GGATCCCGGAACGCTGAACCCGGAGCAACTGGAGCAGTTGCGAGATTTCAAGATCCAGACTCGGATCGCAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS CAA 90 bp | TTGTGGGTTCTCAAGTACTTTTCATTTGCGATCCGAGTCTGGATCTaGAAATCTCGCAACTGCTCCAGTTGCTCCGGGTTCAGCGTTCCG | + |
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Preference number: 6 (lower is better) Translates to: LWVLKYFSFAIRVWI*KSRNCSSCSGFSVP Trigger: CGGAACGCTGAACCCGGAGCAACTGGAGCAGTTGCGAGATTTCAAGATCCAGACTCGGATCGCAAATGAAAAGTACTTGAGAACCCACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS CCA 72 bp | CTGAAGAAGCCGCTGATGAGCAGAGACACCTCTTTGTaGGTTCTCAAGTACTTTTCATTTGCGATCCGAGTC | + |
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Preference number: 6 (lower is better) Translates to: LKKPLMSRDTSL*VLKYFSFAIRV Trigger: GACTCGGATCGCAAATGAAAAGTACTTGAGAACCCACAAAGAGGTGTCTCTGCTCATCAGCGGCTTCTTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS TCA 72 bp | TCAAGTACTTTTCATTTGCGATCCGAGTCTGGATCTTaGAATCTCGCAACTGCTCCAGTTGCTCCGGGTTCA | + |
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Preference number: 6 (lower is better) Translates to: SSTFHLRSESGS*NLATAPVAPGS Trigger: TGAACCCGGAGCAACTGGAGCAGTTGCGAGATTTCAAGATCCAGACTCGGATCGCAAATGAAAAGTACTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS CCA 72 bp | TGGGTTCTCAAGTACTTTTCATTTGCGATCCGAGTCTaGATCTTGAAATCTCGCAACTGCTCCAGTTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: WVLKYFSFAIRV*ILKSRNCSSCS Trigger: GGAGCAACTGGAGCAGTTGCGAGATTTCAAGATCCAGACTCGGATCGCAAATGAAAAGTACTTGAGAACCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS CAA 72 bp | TCTCTGAAGAAGCCGCTGATGAGCAGAGACACCTCTTaGTGGGTTCTCAAGTACTTTTCATTTGCGATCCGA | + |
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Preference number: 6 (lower is better) Translates to: SLKKPLMSRDTS*WVLKYFSFAIR Trigger: TCGGATCGCAAATGAAAAGTACTTGAGAACCCACAAAGAGGTGTCTCTGCTCATCAGCGGCTTCTTCAGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS TCA 72 bp | GCTGCATGTGAATTCTGCTGGGAAGTCTTGGATCCGTaGAATAGTGTGCAGCAAATTCAAGAATGTTGTCCG | + |
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Preference number: 6 (lower is better) Translates to: AACEFCWEVLDP*NSVQQIQECCP Trigger: CGGACAACATTCTTGAATTTGCTGCACACTATTTCACGGATCCAAGACTTCCCAGCAGAATTCACATGCAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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| CDS GCA 72 bp | AGACACCTCTTTGTGGGTTCTCAAGTACTTTTCATTTaGGATCCGAGTCTGGATCTTGAAATCTCGCAACTG | + |
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Preference number: 6 (lower is better) Translates to: RHLFVGSQVLFI*DPSLDLEISQL Trigger: CAGTTGCGAGATTTCAAGATCCAGACTCGGATCGCAAATGAAAAGTACTTGAGAACCCACAAAGAGGTGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029785.4 |
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