Pregenerated sensors for RIDA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022323

Ensembl transcript IDs: ENSMUST00000022946.6

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	GATGTGCTCCTTACTATTTCTCATGTACAACAGCCCATCTTTCCTTCTGCTTCCCTTGGTAAGCAGCCCTaGCAGGAAGGCTACCCTGGA	+
Preference number: 4 (lower is better) Translates to: DVLLTISHVQQPIFPSASLGKQP*QEGYPG Trigger: TCCAGGGTAGCCTTCCTGCCAGGGCTGCTTACCAAG...GGAAGCAGAAGGAAAGATGGGCTGTTGTACATGAGAAATAGTAAGGAGCACATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022946.6
CDS-3UTR CCA 90 bp	GATGTGCTCCTTACTATTTCTCATGTACAACAGCCCATCTTTCCTTCTGCTTCCGCACAAGCTGTCCACTaGAAGGATCCAGGCCTACCT	+
Preference number: 4 (lower is better) Translates to: DVLLTISHVQQPIFPSASAQAVH*KDPGLP Trigger: AGGTAGGCCTGGATCCTTCCAGTGGACAGCTTGTGC...GGAAGCAGAAGGAAAGATGGGCTGTTGTACATGAGAAATAGTAAGGAGCACATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022946.6
CDS-3UTR CCA 90 bp	CAAATCTCCACATATTTGATCACTTCCACAATAACTTCAACCACTCTGGTCATTTTCTACTACTCCTCCTaGCACAAGCTGTCCACTGGA	+
Preference number: 4 (lower is better) Translates to: QISTYLITSTITSTTLVIFYYSS*HKLSTG Trigger: TCCAGTGGACAGCTTGTGCCAGGAGGAGTAGTAGAA...AATGACCAGAGTGGTTGAAGTTATTGTGGAAGTGATCAAATATGTGGAGATTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022946.6
CDS-3UTR CAA 90 bp	GATCACTTCCACAATAACTTCAACCACTCTGGTCATTTTTATACTTCCCAGCATGTCCACTTGCACAGCTaGACTGTAGGGACCAATGGC	+
Preference number: 5 (lower is better) Translates to: DHFHNNFNHSGHFYTSQHVHLHS*TVGTNG Trigger: GCCATTGGTCCCTACAGTCAAGCTGTGCAAGTGGAC...ATGCTGGGAAGTATAAAAATGACCAGAGTGGTTGAAGTTATTGTGGAAGTGATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022946.6