Pregenerated sensors for RHOX9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068048Ensembl transcript IDs: ENSMUST00000089062.8, ENSMUST00000170643.4
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGGTGGGAGGCAGTCTGCCCAGGATCCACTGTGCTAGCCTCTTTTaGGCACCCAGAATGCACAGTGATGAGACCAGGGTACCTCTTCCT | + |
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Preference number: 1 (lower is better) Translates to: KVGGSLPRIHCASLF*APRMHSDETRVPLP Trigger: AGGAAGAGGTACCCTGGTCTCATCACTGTGCATTCTGGGTGCTCAAAAGAGGCTAGCACAGTGGATCCTGGGCAGACTGCCTCCCACCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR GCA 90 bp | GTCTGCCCAGGATCCACTGTGCTAGCCTCTTTTGAGCACCCAGAATaGACAGTGATGAGACCAGGGTACCTCTTCCTGCTTGGTACTTCC | + |
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Preference number: 1 (lower is better) Translates to: VCPGSTVLASFEHPE*TVMRPGYLFLLGTS Trigger: GGAAGTACCAAGCAGGAAGAGGTACCCTGGTCTCATCACTGTGCATTCTGGGTGCTCAAAAGAGGCTAGCACAGTGGATCCTGGGCAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR GCA 90 bp | AAGGTATTCAGAACCCATCCCAGGGCCAGGTGTGTGCTAGCCATGTaGTGTAGCACTGAGCCACTCCCCTGGAAGAGTCACTGCATCTTT | + |
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Preference number: 1 (lower is better) Translates to: KVFRTHPRARCVLAM*CSTEPLPWKSHCIF Trigger: AAAGATGCAGTGACTCTTCCAGGGGAGTGGCTCAGTGCTACAGCACATGGCTAGCACACACCTGGCCCTGGGATGGGTTCTGAATACCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR CCA 90 bp | CCAAGCCCCTTAGGACATGGGACTCCACACCCAGTCTTTCAACCATaGAACAGACCCAAAACACCGCCTCCTCTCTCCATCCTCGATATT | + |
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Preference number: 1 (lower is better) Translates to: PSPLGHGTPHPVFQP*NRPKTPPPLSILDI Trigger: AATATCGAGGATGGAGAGAGGAGGCGGTGTTTTGGGTCTGTTCCATGGTTGAAAGACTGGGTGTGGAGTCCCATGTCCTAAGGGGCTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR TCA 90 bp | GTGACAGTGTTAAAAGTGAGTAAGAACATGGTCTCTTCACTCCTGTaGGGCATGTGGGCTGCACAGACTTCTGAAGGCAACATCACCGTG | + |
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Preference number: 1 (lower is better) Translates to: VTVLKVSKNMVSSLL*GMWAAQTSEGNITV Trigger: CACGGTGATGTTGCCTTCAGAAGTCTGTGCAGCCCACATGCCTCACAGGAGTGAAGAGACCATGTTCTTACTCACTTTTAACACTGTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR GCA 90 bp | CTAGCCATGTGCTGTAGCACTGAGCCACTCCCCTGGAAGAGTCACTaGATCTTTCAAATACCCAGAAACTATGTGATTATTGCTCTAACC | + |
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Preference number: 1 (lower is better) Translates to: LAMCCSTEPLPWKSH*IFQIPRNYVIIALT Trigger: GGTTAGAGCAATAATCACATAGTTTCTGGGTATTTGAAAGATGCAGTGACTCTTCCAGGGGAGTGGCTCAGTGCTACAGCACATGGCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR GCA 90 bp | CAGACCCAAAACACCGCCTCCTCTCTCCATCCTCGATATTTTTCCTaGATTTCTTCAGGAAAGAATTCACTTGTAGCTCATTGGTGGTTC | + |
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Preference number: 1 (lower is better) Translates to: QTQNTASSLHPRYFS*ISSGKNSLVAHWWF Trigger: GAACCACCAATGAGCTACAAGTGAATTCTTTCCTGAAGAAATGCAGGAAAAATATCGAGGATGGAGAGAGGAGGCGGTGTTTTGGGTCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR GCA 90 bp | CAGAACACTTACCTGCACATCAGATTCATCCACACCCATCCATCGTaGAAGATCCCTCCTAAAGAGAAAAAGTTCCAACATTTAGCCTTT | + |
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Preference number: 1 (lower is better) Translates to: QNTYLHIRFIHTHPS*KIPPKEKKFQHLAF Trigger: AAAGGCTAAATGTTGGAACTTTTTCTCTTTAGGAGGGATCTTGCACGATGGATGGGTGTGGATGAATCTGATGTGCAGGTAAGTGTTCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR GCA 90 bp | AATTGTGGTCAGAGTACAGAGAGATACACACTCAATAAAACAATGTaGCACAGGCTGTTTCAGGTCCTTGGTCCCAATATTGCTTTTAGA | + |
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Preference number: 1 (lower is better) Translates to: NCGQSTERYTLNKTM*HRLFQVLGPNIAFR Trigger: TCTAAAAGCAATATTGGGACCAAGGACCTGAAACAGCCTGTGGCACATTGTTTTATTGAGTGTGTATCTCTCTGTACTCTGACCACAATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR CCA 90 bp | GGAAATCAATTGTGTAAGGACATGTCCGATTTGGTTTTATATGTTTaGGCCCACACTTGTGTGCTCATACACATTTACTTACAGTCACTA | + |
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Preference number: 1 (lower is better) Translates to: GNQLCKDMSDLVLYV*AHTCVLIHIYLQSL Trigger: TAGTGACTGTAAGTAAATGTGTATGAGCACACAAGTGTGGGCCCAAACATATAAAACCAAATCGGACATGTCCTTACACAATTGATTTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR-3UTR CCA 90 bp | AGTTTGGAAGGTATTCAGAACCCATCCCAGGGCCAGGTGTGTGCTAGCCATGTGAGAACAATAGGAAGGTaGGAGGCAGTCTGCCCAGGA | + |
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Preference number: 2 (lower is better) Translates to: SLEGIQNPSQGQVCASHVRTIGR*EAVCPG Trigger: TCCTGGGCAGACTGCCTCCCACCTTCCTATTGTTCT...CACATGGCTAGCACACACCTGGCCCTGGGATGGGTTCTGAATACCTTCCAAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR-3UTR TCA 90 bp | AAAACACCGCCTCCTCTCTCCATCCTCGATATTTTTCCTGCATTTCTTCAGGAAGTCTCTTCACTCCTGTaGGGCATGTGGGCTGCACAG | + |
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Preference number: 2 (lower is better) Translates to: KTPPPLSILDIFPAFLQEVSSLL*GMWAAQ Trigger: CTGTGCAGCCCACATGCCTCACAGGAGTGAAGAGAC...TTCCTGAAGAAATGCAGGAAAAATATCGAGGATGGAGAGAGGAGGCGGTGTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR-3UTR TCA 90 bp | CCCAGAAACTATGTGATTATTGCTCTAACCCCAAGAGGGGCTGAAGAGGGTCCTTGTGCTAGCCTCTTTTaGGCACCCAGAATGCACAGT | + |
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Preference number: 2 (lower is better) Translates to: PRNYVIIALTPRGAEEGPCASLF*APRMHS Trigger: ACTGTGCATTCTGGGTGCTCAAAAGAGGCTAGCACA...AGGACCCTCTTCAGCCCCTCTTGGGGTTAGAGCAATAATCACATAGTTTCTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR-3UTR CCA 90 bp | GTCCGATTTGGTTTTATATGTTTGGGCCCACACTTGTGTGCTCATACACATTTATTGTCCTGGCCATCATaGCTCCACGACAGGGGAGGC | + |
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Preference number: 2 (lower is better) Translates to: VRFGFICLGPHLCAHTHLLSWPS*LHDRGG Trigger: GCCTCCCCTGTCGTGGAGCCATGATGGCCAGGACAA...TAAATGTGTATGAGCACACAAGTGTGGGCCCAAACATATAAAACCAAATCGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR-3UTR CCA 90 bp | CCCAGAAACTATGTGATTATTGCTCTAACCCCAAGAGGGGCTGAAGAGGGTCCTCCAGTCTTTCAACCATaGAACAGACCCAAAACACCG | + |
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Preference number: 2 (lower is better) Translates to: PRNYVIIALTPRGAEEGPPVFQP*NRPKTP Trigger: CGGTGTTTTGGGTCTGTTCCATGGTTGAAAGACTGG...AGGACCCTCTTCAGCCCCTCTTGGGGTTAGAGCAATAATCACATAGTTTCTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR-3UTR CCA 90 bp | CTGCTGTGTCTGCGGAAAAGGGCTCTCCTCATCTTAAACCACTCCTATACGCAGTTGGTTTTATATGTTTaGGCCCACACTTGTGTGCTC | + |
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Preference number: 2 (lower is better) Translates to: LLCLRKRALLILNHSYTQLVLYV*AHTCVL Trigger: GAGCACACAAGTGTGGGCCCAAACATATAAAACCAA...CTGCGTATAGGAGTGGTTTAAGATGAGGAGAGCCCTTTTCCGCAGACACAGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR-3UTR GCA 90 bp | CAATGTGCCACAGGCTGTTTCAGGTCCTTGGTCCCAATATTGCTTTTAGAAATACACACCCATCCATCGTaGAAGATCCCTCCTAAAGAG | + |
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Preference number: 2 (lower is better) Translates to: QCATGCFRSLVPILLLEIHTHPS*KIPPKE Trigger: CTCTTTAGGAGGGATCTTGCACGATGGATGGGTGTG...TATTTCTAAAAGCAATATTGGGACCAAGGACCTGAAACAGCCTGTGGCACATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR-3UTR TCA 90 bp | CAATGTGCCACAGGCTGTTTCAGGTCCTTGGTCCCAATATTGCTTTTAGAAATAAGAGAGCGTCTGGGATaGAAAGCACTAGCAACATTT | + |
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Preference number: 2 (lower is better) Translates to: QCATGCFRSLVPILLLEIRERLG*KALATF Trigger: AAATGTTGCTAGTGCTTTTCATCCCAGACGCTCTCT...TATTTCTAAAAGCAATATTGGGACCAAGGACCTGAAACAGCCTGTGGCACATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR-3UTR TCA 90 bp | CTGAGCCACTCCCCTGGAAGAGTCACTGCATCTTTCAAATACCCAGAAACTATGGTCTCTTTGGTGAACTaGCAATGTAAAATCAGTGAA | + |
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Preference number: 2 (lower is better) Translates to: LSHSPGRVTASFKYPETMVSLVN*QCKISE Trigger: TTCACTGATTTTACATTGTCAGTTCACCAAAGAGAC...CATAGTTTCTGGGTATTTGAAAGATGCAGTGACTCTTCCAGGGGAGTGGCTCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR-3UTR CCA 90 bp | AAAACACCGCCTCCTCTCTCCATCCTCGATATTTTTCCTGCATTTCTTCAGGAAAGGACATGTCCGATTTaGTTTTATATGTTTGGGCCC | + |
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Preference number: 2 (lower is better) Translates to: KTPPPLSILDIFPAFLQERTCPI*FYMFGP Trigger: GGGCCCAAACATATAAAACCAAATCGGACATGTCCT...TTCCTGAAGAAATGCAGGAAAAATATCGAGGATGGAGAGAGGAGGCGGTGTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR GCA 72 bp | AGAACCCATCCCAGGGCCAGGTGTGTGCTAGCCATGTaGTGTAGCACTGAGCCACTCCCCTGGAAGAGTCAC | + |
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Preference number: 3 (lower is better) Translates to: RTHPRARCVLAM*CSTEPLPWKSH Trigger: GTGACTCTTCCAGGGGAGTGGCTCAGTGCTACAGCACATGGCTAGCACACACCTGGCCCTGGGATGGGTTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR GCA 72 bp | AGGGCCAGGGAGAGCCAAAGGACACTCTGGACCCGATaGACTACCTATAAATGTGGCGCGAAGCACTGGCCA | + |
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Preference number: 3 (lower is better) Translates to: RARESQRTLWTR*TTYKCGAKHWP Trigger: TGGCCAGTGCTTCGCGCCACATTTATAGGTAGTGCATCGGGTCCAGAGTGTCCTTTGGCTCTCCCTGGCCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR GCA 72 bp | CCGCATAGCTCCCACACCCCTACCCTGGGATCTAGTTaGAGGCTGACAGTTCTAATTGCAGGCGGAAGATCC | + |
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Preference number: 3 (lower is better) Translates to: PHSSHTPTLGSS*RLTVLIAGGRS Trigger: GGATCTTCCGCCTGCAATTAGAACTGTCAGCCTGCAACTAGATCCCAGGGTAGGGGTGTGGGAGCTATGCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR CCA 72 bp | GGGAATCAGAGGGCCAGGGAGAGCCAAAGGACACTCTaGACCCGATGCACTACCTATAAATGTGGCGCGAAG | + |
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Preference number: 3 (lower is better) Translates to: GNQRARESQRTL*TRCTTYKCGAK Trigger: CTTCGCGCCACATTTATAGGTAGTGCATCGGGTCCAGAGTGTCCTTTGGCTCTCCCTGGCCCTCTGATTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR TCA 72 bp | GGCAGTCTGCCCAGGATCCACTGTGCTAGCCTCTTTTaGGCACCCAGAATGCACAGTGATGAGACCAGGGTA | + |
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Preference number: 3 (lower is better) Translates to: GSLPRIHCASLF*APRMHSDETRV Trigger: TACCCTGGTCTCATCACTGTGCATTCTGGGTGCTCAAAAGAGGCTAGCACAGTGGATCCTGGGCAGACTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR CCA 72 bp | GTGCTAGCCATGTGCTGTAGCACTGAGCCACTCCCCTaGAAGAGTCACTGCATCTTTCAAATACCCAGAAAC | + |
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Preference number: 3 (lower is better) Translates to: VLAMCCSTEPLP*KSHCIFQIPRN Trigger: GTTTCTGGGTATTTGAAAGATGCAGTGACTCTTCCAGGGGAGTGGCTCAGTGCTACAGCACATGGCTAGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR-3UTR CAA 90 bp | TGGTCTCTTCACTCCTGTGAGGCATGTGGGCTGCACAGACTTCTGAAGGCAACATGTTTGGGCCCACACTaGTGTGCTCATACACATTTA | + |
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Preference number: 3 (lower is better) Translates to: WSLHSCEACGLHRLLKATCLGPH*CAHTHL Trigger: TAAATGTGTATGAGCACACAAGTGTGGGCCCAAACA...TGTTGCCTTCAGAAGTCTGTGCAGCCCACATGCCTCACAGGAGTGAAGAGACCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR CCA 72 bp | GGAGTGCTATACCCCCTCTTCATTTTCCTAACAGTTTaGAAGGTATTCAGAACCCATCCCAGGGCCAGGTGT | + |
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Preference number: 3 (lower is better) Translates to: GVLYPLFIFLTV*KVFRTHPRARC Trigger: ACACCTGGCCCTGGGATGGGTTCTGAATACCTTCCAAACTGTTAGGAAAATGAAGAGGGGGTATAGCACTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR-3UTR CAA 90 bp | AACTATGTGATTATTGCTCTAACCCCAAGAGGGGCTGAAGAGGGTCCTCGGGTGTCTGGTGGAAATCAATaGTGTAAGGACATGTCCGAT | + |
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Preference number: 3 (lower is better) Translates to: NYVIIALTPRGAEEGPRVSGGNQ*CKDMSD Trigger: ATCGGACATGTCCTTACACAATTGATTTCCACCAGA...CACCCGAGGACCCTCTTCAGCCCCTCTTGGGGTTAGAGCAATAATCACATAGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR TCA 72 bp | TTAAAAGTGAGTAAGAACATGGTCTCTTCACTCCTGTaGGGCATGTGGGCTGCACAGACTTCTGAAGGCAAC | + |
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Preference number: 3 (lower is better) Translates to: LKVSKNMVSSLL*GMWAAQTSEGN Trigger: GTTGCCTTCAGAAGTCTGTGCAGCCCACATGCCTCACAGGAGTGAAGAGACCATGTTCTTACTCACTTTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR TCA 72 bp | GGTGTCCCCCAATACACAGATGTCTCTTTGGTGAACTaGCAATGTAAAATCAGTGAAGAGAGCGTCTGGGAT | + |
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Preference number: 3 (lower is better) Translates to: GVPQYTDVSLVN*QCKISEESVWD Trigger: ATCCCAGACGCTCTCTTCACTGATTTTACATTGTCAGTTCACCAAAGAGACATCTGTGTATTGGGGGACACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR GCA 72 bp | TACCTGCACATCAGATTCATCCACACCCATCCATCGTaGAAGATCCCTCCTAAAGAGAAAAAGTTCCAACAT | + |
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Preference number: 3 (lower is better) Translates to: YLHIRFIHTHPS*KIPPKEKKFQH Trigger: ATGTTGGAACTTTTTCTCTTTAGGAGGGATCTTGCACGATGGATGGGTGTGGATGAATCTGATGTGCAGGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR GCA 72 bp | TGCTGTAGCACTGAGCCACTCCCCTGGAAGAGTCACTaGATCTTTCAAATACCCAGAAACTATGTGATTATT | + |
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Preference number: 3 (lower is better) Translates to: CCSTEPLPWKSH*IFQIPRNYVII Trigger: AATAATCACATAGTTTCTGGGTATTTGAAAGATGCAGTGACTCTTCCAGGGGAGTGGCTCAGTGCTACAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR CCA 72 bp | TTGTGTAAGGACATGTCCGATTTGGTTTTATATGTTTaGGCCCACACTTGTGTGCTCATACACATTTACTTA | + |
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Preference number: 3 (lower is better) Translates to: LCKDMSDLVLYV*AHTCVLIHIYL Trigger: TAAGTAAATGTGTATGAGCACACAAGTGTGGGCCCAAACATATAAAACCAAATCGGACATGTCCTTACACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| CDS-3UTR GCA 90 bp | GGTTGTCCTGGCCATCATGGCTCCACGACAGGGGAGGCACTCAAGTGCTGCTCCGCCCTCAGGAATGGCTaGCTCTTGTTGCGGCGGTTG | + |
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Preference number: 4 (lower is better) Translates to: GCPGHHGSTTGEALKCCSALRNG*LLLRRL Trigger: CAACCGCCGCAACAAGAGGCAGCCATTCCTGAGGGC...GGAGCAGCACTTGAGTGCCTCCCCTGTCGTGGAGCCATGATGGCCAGGACAACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089062.8 ENSMUST00000170643.4 |
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| CDS-3UTR GCA 90 bp | GTTGTCCTGGCCATCATGGCTCCACGACAGGGGAGGCACTCAAGTGCTGCTCCAGCCCTCAGGAATGGCTaGCTCTTGTTGCGGCGGTTG | + |
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Preference number: 4 (lower is better) Translates to: VVLAIMAPRQGRHSSAAPALRNG*LLLRRL Trigger: CAACCGCCGCAACAAGAGGCAGCCATTCCTGAGGGC...TGGAGCAGCACTTGAGTGCCTCCCCTGTCGTGGAGCCATGATGGCCAGGACAAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089062.8 ENSMUST00000170643.4 |
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| CDS-3UTR GCA 90 bp | GGTTGTCCTGGCCATCATGGCTCCACGACAGGGGAGGCACTCAAGTGCTGCTCCCACACCCATCCATCGTaGAAGATCCCTCCTTACTCG | + |
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Preference number: 4 (lower is better) Translates to: GCPGHHGSTTGEALKCCSHTHPS*KIPPYS Trigger: CGAGTAAGGAGGGATCTTGCACGATGGATGGGTGTG...GGAGCAGCACTTGAGTGCCTCCCCTGTCGTGGAGCCATGATGGCCAGGACAACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089062.8 |
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| CDS-3UTR GCA 90 bp | TTGTCCTGGCCATCATGGCTCCACGACAGGGGAGGCACTCAAGTGCTGCTCCAATCAGCCTGCTGTGTCTaGGGAAAAGGGCTCTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: LSWPSWLHDRGGTQVLLQSACCV*GKGLSS Trigger: TGAGGAGAGCCCTTTTCCGCAGACACAGCAGGCTGA...TTGGAGCAGCACTTGAGTGCCTCCCCTGTCGTGGAGCCATGATGGCCAGGACAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089062.8 |
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| CDS-3UTR GCA 90 bp | TATAGAGAAGTAAAGGTTGTCCTGGCCATCATGGCTCCACGACAGGGGAGGCACACTGCATTCCCACCATaGTGTTCTTCCTTGTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: YREVKVVLAIMAPRQGRHTAFPP*CSSLSS Trigger: GGAGGACAAGGAAGAACAGCATGGTGGGAATGCAGT...GTGCCTCCCCTGTCGTGGAGCCATGATGGCCAGGACAACCTTTACTTCTCTATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089062.8 ENSMUST00000170643.4 |
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| 3UTR CAA 72 bp | CTAAATTTCCCAGTCTTGAACAGGGCAACAAAACATTaGTTTCCAGTCCGCATAGCTCCCACACCCCTACCC | + |
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Preference number: 4 (lower is better) Translates to: LNFPVLNRATKH*FPVRIAPTPLP Trigger: GGGTAGGGGTGTGGGAGCTATGCGGACTGGAAACAAATGTTTTGTTGCCCTGTTCAAGACTGGGAAATTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR CAA 72 bp | CTGCATTTCTTCAGGAAAGAATTCACTTGTAGCTCATaGGTGGTTCCTGGGCCTTGCTGTGGGAAAATAGCA | + |
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Preference number: 4 (lower is better) Translates to: LHFFRKEFTCSS*VVPGPCCGKIA Trigger: TGCTATTTTCCCACAGCAAGGCCCAGGAACCACCAATGAGCTACAAGTGAATTCTTTCCTGAAGAAATGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| CDS-3UTR GCA 90 bp | ACATTGTCTAAATTTCCCAGTCTTGAACAGGGCAACAAAACATTTGTTTCCAGTACTGCATTCCCACCATaGTGTTCTTCCTTGTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: TLSKFPSLEQGNKTFVSSTAFPP*CSSLSS Trigger: GGAGGACAAGGAAGAACAGCATGGTGGGAATGCAGT...ACTGGAAACAAATGTTTTGTTGCCCTGTTCAAGACTGGGAAATTTAGACAATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR CAA 72 bp | CATGTCCGATTTGGTTTTATATGTTTGGGCCCACACTaGTGTGCTCATACACATTTACTTACAGTCACTATT | + |
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Preference number: 4 (lower is better) Translates to: HVRFGFICLGPH*CAHTHLLTVTI Trigger: AATAGTGACTGTAAGTAAATGTGTATGAGCACACAAGTGTGGGCCCAAACATATAAAACCAAATCGGACATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| 3UTR CAA 72 bp | ATTTACAACACTAAACATTGTCTAAATTTCCCAGTCTaGAACAGGGCAACAAAACATTTGTTTCCAGTCCGC | + |
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Preference number: 4 (lower is better) Translates to: IYNTKHCLNFPV*NRATKHLFPVR Trigger: GCGGACTGGAAACAAATGTTTTGTTGCCCTGTTCAAGACTGGGAAATTTAGACAATGTTTAGTGTTGTAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| CDS-3UTR CAA 90 bp | GGTTGTCCTGGCCATCATGGCTCCACGACAGGGGAGGCACTCAAGTGCTGCTCCCCATGCTGTTCTTCCTaGTCCTCCTCGGCTCCCGGA | + |
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Preference number: 5 (lower is better) Translates to: GCPGHHGSTTGEALKCCSPCCSS*SSSAPG Trigger: TCCGGGAGCCGAGGAGGACAAGGAAGAACAGCATGG...GGAGCAGCACTTGAGTGCCTCCCCTGTCGTGGAGCCATGATGGCCAGGACAACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089062.8 ENSMUST00000170643.4 |
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| CDS TCA 90 bp | GATTCTCTTGGAAAAGGCGCTCCAGATCACGCAGCTGAGAGTGGGTaGACCTGGTGCGGCGGGTCCGCTGGTGAGCCAGATAGTTCCCAG | + |
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Preference number: 5 (lower is better) Translates to: DSLGKGAPDHAAESG*TWCGGSAGEPDSSQ Trigger: CTGGGAACTATCTGGCTCACCAGCGGACCCGCCGCACCAGGTTCACCCACTCTCAGCTGCGTGATCTGGAGCGCCTTTTCCAAGAGAATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089062.8 ENSMUST00000170643.4 |
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| CDS-3UTR CAA 90 bp | CCTGGCCATCATGGCTCCACGACAGGGGAGGCACTCAAGTGCTGCTCCAAAATCCGGACTCGGAGGCTTTaGGATGCTTTGGCGGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: PGHHGSTTGEALKCCSKIRTRRL*DALAAV Trigger: GACAGCCGCCAAAGCATCCAAAAGCCTCCGAGTCCG...GATTTTGGAGCAGCACTTGAGTGCCTCCCCTGTCGTGGAGCCATGATGGCCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089062.8 ENSMUST00000170643.4 |
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| CDS-3UTR CAA 90 bp | TTGTCCTGGCCATCATGGCTCCACGACAGGGGAGGCACTCAAGTGCTGCTCCAATGGAGCAGGCTCTTCTaGAGCCTGCTCACCTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: LSWPSWLHDRGGTQVLLQWSRLF*SLLTSS Trigger: GCTGGAGGTGAGCAGGCTCAAGAAGAGCCTGCTCCA...TTGGAGCAGCACTTGAGTGCCTCCCCTGTCGTGGAGCCATGATGGCCAGGACAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089062.8 ENSMUST00000170643.4 |
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| CDS-3UTR CAA 90 bp | GTTGTCCTGGCCATCATGGCTCCACGACAGGGGAGGCACTCAAGTGCTGCTCCAAGGCTTTTGGATGCTTaGGCGGCTGTCTTGAGGAGT | + |
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Preference number: 5 (lower is better) Translates to: VVLAIMAPRQGRHSSAAPRLLDA*AAVLRS Trigger: ACTCCTCAAGACAGCCGCCAAAGCATCCAAAAGCCT...TGGAGCAGCACTTGAGTGCCTCCCCTGTCGTGGAGCCATGATGGCCAGGACAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089062.8 ENSMUST00000170643.4 |
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| CDS GCA 90 bp | AAGCTCTTTCTTGTCTATTCCTTCCTCTCCAGCCCCGGAGACCACTaGATTCCCACCATGCTGTTCTTCCTTGTCCTCCTCGGCTCCCGG | + |
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Preference number: 5 (lower is better) Translates to: KLFLVYSFLSSPGDH*IPTMLFFLVLLGSR Trigger: CCGGGAGCCGAGGAGGACAAGGAAGAACAGCATGGTGGGAATGCAGTGGTCTCCGGGGCTGGAGAGGAAGGAATAGACAAGAAAGAGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089062.8 ENSMUST00000170643.4 |
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| CDS-3UTR CAA 90 bp | TATAGAGAAGTAAAGGTTGTCCTGGCCATCATGGCTCCACGACAGGGGAGGCACCGGACTCGGAGGCTTTaGGATGCTTTGGCGGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: YREVKVVLAIMAPRQGRHRTRRL*DALAAV Trigger: GACAGCCGCCAAAGCATCCAAAAGCCTCCGAGTCCG...GTGCCTCCCCTGTCGTGGAGCCATGATGGCCAGGACAACCTTTACTTCTCTATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089062.8 ENSMUST00000170643.4 |
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| CDS-3UTR CAA 90 bp | CATTTGTTTCCAGTCCGCATAGCTCCCACACCCCTACCCTGGGATCTAGTTGCATGGAGCAGGCTCTTCTaGAGCCTGCTCACCTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: HLFPVRIAPTPLPWDLVAWSRLF*SLLTSS Trigger: GCTGGAGGTGAGCAGGCTCAAGAAGAGCCTGCTCCA...TGCAACTAGATCCCAGGGTAGGGGTGTGGGAGCTATGCGGACTGGAAACAAATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| CDS-3UTR CAA 90 bp | GTTGTCCTGGCCATCATGGCTCCACGACAGGGGAGGCACTCAAGTGCTGCTCCACTCTTGTTGCGGCGGTaGTTGATCTATGTTTTCGCC | + |
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Preference number: 5 (lower is better) Translates to: VVLAIMAPRQGRHSSAAPLLLRR*LIYVFA Trigger: GGCGAAAACATAGATCAACAACCGCCGCAACAAGAG...TGGAGCAGCACTTGAGTGCCTCCCCTGTCGTGGAGCCATGATGGCCAGGACAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089062.8 ENSMUST00000170643.4 |
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| CDS-3UTR CAA 90 bp | AGTAAAGGTTGTCCTGGCCATCATGGCTCCACGACAGGGGAGGCACTCAAGTGCCTCTTGTTGCGGCGGTaGTTGATCTATGTTTTCGCC | + |
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Preference number: 5 (lower is better) Translates to: SKGCPGHHGSTTGEALKCLLLRR*LIYVFA Trigger: GGCGAAAACATAGATCAACAACCGCCGCAACAAGAG...GCACTTGAGTGCCTCCCCTGTCGTGGAGCCATGATGGCCAGGACAACCTTTACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089062.8 ENSMUST00000170643.4 |
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| CDS-3UTR CAA 90 bp | CTGCTGTGTCTGCGGAAAAGGGCTCTCCTCATCTTAAACCACTCCTATACGCAGAGGCTTTTGGATGCTTaGGCGGCTGTCTTGAGGAGT | + |
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Preference number: 5 (lower is better) Translates to: LLCLRKRALLILNHSYTQRLLDA*AAVLRS Trigger: ACTCCTCAAGACAGCCGCCAAAGCATCCAAAAGCCT...CTGCGTATAGGAGTGGTTTAAGATGAGGAGAGCCCTTTTCCGCAGACACAGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170643.4 |
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| CDS GCA 90 bp | CTTAAACCACTCCTGCACATCAGATTCATCCACACCCATCCATCGTaGAAGATCCCTCCTTACTCGCAAGCTGGGGAAGCGATTCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: LKPLLHIRFIHTHPS*KIPPYSQAGEAILL Trigger: CAAGAGAATCGCTTCCCCAGCTTGCGAGTAAGGAGGGATCTTGCACGATGGATGGGTGTGGATGAATCTGATGTGCAGGAGTGGTTTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089062.8 |
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| CDS TCA 72 bp | GGAAAAGGCGCTCCAGATCACGCAGCTGAGAGTGGGTaGACCTGGTGCGGCGGGTCCGCTGGTGAGCCAGAT | + |
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Preference number: 6 (lower is better) Translates to: GKGAPDHAAESG*TWCGGSAGEPD Trigger: ATCTGGCTCACCAGCGGACCCGCCGCACCAGGTTCACCCACTCTCAGCTGCGTGATCTGGAGCGCCTTTTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089062.8 ENSMUST00000170643.4 |
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| CDS TCA 72 bp | CGATTCTCTTGGAAAAGGCGCTCCAGATCACGCAGCTaGGAGTGGGTGAACCTGGTGCGGCGGGTCCGCTGG | + |
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Preference number: 6 (lower is better) Translates to: RFSWKRRSRSRS*EWVNLVRRVRW Trigger: CCAGCGGACCCGCCGCACCAGGTTCACCCACTCTCAGCTGCGTGATCTGGAGCGCCTTTTCCAAGAGAATCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089062.8 ENSMUST00000170643.4 |
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| CDS GCA 72 bp | TCCTCTCCAGCCCCGGAGACCACTGCATTCCCACCATaGTGTTCTTCCTTGTCCTCCTCGGCTCCCGGACTC | + |
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Preference number: 6 (lower is better) Translates to: SSPAPETTAFPP*CSSLSSSAPGL Trigger: GAGTCCGGGAGCCGAGGAGGACAAGGAAGAACAGCATGGTGGGAATGCAGTGGTCTCCGGGGCTGGAGAGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089062.8 ENSMUST00000170643.4 |
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| CDS CCA 72 bp | GCGGGTCCGCTGGTGAGCCAGATAGTTCCCAGCCTGTaGATTTCTCATGCCCTCAGGAATGGCTGCCTCTTG | + |
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Preference number: 6 (lower is better) Translates to: AGPLVSQIVPSL*ISHALRNGCLL Trigger: CAAGAGGCAGCCATTCCTGAGGGCATGAGAAATCCACAGGCTGGGAACTATCTGGCTCACCAGCGGACCCGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089062.8 ENSMUST00000170643.4 |
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| CDS CCA 72 bp | CTCTTCTCCTCCAGTGGCTTCCTGAGCTGGACTCAATaGAGCAGGCTCTTCTTGAGCCTGCTCACCTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: LFSSSGFLSWTQ*SRLFLSLLTSS Trigger: GCTGGAGGTGAGCAGGCTCAAGAAGAGCCTGCTCCATTGAGTCCAGCTCAGGAAGCCACTGGAGGAGAAGAG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089062.8 ENSMUST00000170643.4 |
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| CDS CAA 90 bp | TCGTGCAAGATCCCTCCTTACTCGCAAGCTGGGGAAGCGATTCTCTaGGAAAAGGCGCTCCAGATCACGCAGCTGAGAGTGGGTGAACCT | + |
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Preference number: 6 (lower is better) Translates to: SCKIPPYSQAGEAIL*EKALQITQLRVGEP Trigger: AGGTTCACCCACTCTCAGCTGCGTGATCTGGAGCGCCTTTTCCAAGAGAATCGCTTCCCCAGCTTGCGAGTAAGGAGGGATCTTGCACGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089062.8 |
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| CDS GCA 72 bp | CTTGTCTATTCCTTCCTCTCCAGCCCCGGAGACCACTaGATTCCCACCATGCTGTTCTTCCTTGTCCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: LVYSFLSSPGDH*IPTMLFFLVLL Trigger: GAGGAGGACAAGGAAGAACAGCATGGTGGGAATGCAGTGGTCTCCGGGGCTGGAGAGGAAGGAATAGACAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089062.8 ENSMUST00000170643.4 |
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| CDS GCA 72 bp | CTCCTGCACATCAGATTCATCCACACCCATCCATCGTaGAAGATCCCTCCTTACTCGCAAGCTGGGGAAGCG | + |
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Preference number: 6 (lower is better) Translates to: LLHIRFIHTHPS*KIPPYSQAGEA Trigger: CGCTTCCCCAGCTTGCGAGTAAGGAGGGATCTTGCACGATGGATGGGTGTGGATGAATCTGATGTGCAGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089062.8 |
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| CDS GCA 72 bp | CTGCGGAAAAGGGCTCTCCTCATCTTAAACCACTCCTaGACATCAGATTCATCCACACCCATCCATCGTGCA | + |
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Preference number: 6 (lower is better) Translates to: LRKRALLILNHS*TSDSSTPIHRA Trigger: TGCACGATGGATGGGTGTGGATGAATCTGATGTGCAGGAGTGGTTTAAGATGAGGAGAGCCCTTTTCCGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089062.8 |
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| CDS CAA 72 bp | CCATCACCAGCATGTCTTCCTTCCATTTCTCCTTCCTaGTTTTCTCCCTCCTCTTCTCCTCCAGTGGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: PSPACLPSISPS*FSPSSSPPVAS Trigger: GGAAGCCACTGGAGGAGAAGAGGAGGGAGAAAACAAGGAAGGAGAAATGGAAGGAAGACATGCTGGTGATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089062.8 ENSMUST00000170643.4 |
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