RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RHOX8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000064137

Ensembl transcript IDs: ENSMUST00000071885.7

Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTGGTGGCAGCAAAATCTCATCTGCTTCTGTCTTCTGGGCACAGTTaGTTCTCCAGCGCTCCTCCACAATCTCTAGGGAAAGGTGCCCCT +
Preference number: 1 (lower is better)
Translates to: LVAAKSHLLLSSGHS*FSSAPPQSLGKGAP
Trigger: AGGGGCACCTTTCCCTAGAGATTGTGGAGGAGCGCTGGAGAACCAACTGTGCCCAGAAGACAGAAGCAGATGAGATTTTGCTGCCACCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
3UTR CAA 90 bp GTTGGTGGCAGCAAAATCTCATCTGCTTCTGTCTTCTGGGCACAGTaGGTTCTCCAGCGCTCCTCCACAATCTCTAGGGAAAGGTGCCCC +
Preference number: 2 (lower is better)
Translates to: VGGSKISSASVFWAQ*VLQRSSTISRERCP
Trigger: GGGGCACCTTTCCCTAGAGATTGTGGAGGAGCGCTGGAGAACCAACTGTGCCCAGAAGACAGAAGCAGATGAGATTTTGCTGCCACCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS-3UTR GCA 90 bp TTCTCCAGCGCTCCTCCACAATCTCTAGGGAAAGGTGCCCCTGCAGGGAGCACCGGCGGCGGCGGCTGCTaGTGCTTCTTCTTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: FSSAPPQSLGKGAPAGSTGGGGC*CFFFFF
Trigger: GAAGAAGAAGAAGAAGCAGCAGCAGCCGCCGCCGCC...GGTGCTCCCTGCAGGGGCACCTTTCCCTAGAGATTGTGGAGGAGCGCTGGAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS-3UTR GCA 90 bp TGGTTCTCCAGCGCTCCTCCACAATCTCTAGGGAAAGGTGCCCCTGCAGGGAGCTCTGGCGGCGGCGGCTaGTGCTGCTTCTTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: WFSSAPPQSLGKGAPAGSSGGGG*CCFFFF
Trigger: GAAGAAGAAGAAGCAGCAGCAGCCGCCGCCGCCAGA...GCTCCCTGCAGGGGCACCTTTCCCTAGAGATTGTGGAGGAGCGCTGGAGAACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS-3UTR CCA 90 bp AGCGCTCCTCCACAATCTCTAGGGAAAGGTGCCCCTGCAGGGAGCACCATGAGACGGTTGCGGGGTAGCTaGCCTGATGGACTTGGGAGA +
Preference number: 4 (lower is better)
Translates to: SAPPQSLGKGAPAGSTMRRLRGS*PDGLGR
Trigger: TCTCCCAAGTCCATCAGGCCAGCTACCCCGCAACCG...TCTCATGGTGCTCCCTGCAGGGGCACCTTTCCCTAGAGATTGTGGAGGAGCGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS-3UTR CCA 90 bp TCCAGCGCTCCTCCACAATCTCTAGGGAAAGGTGCCCCTGCAGGGAGCACCATGATGCGCTCCAGTTCCTaGAGCTGGAACTTGGTAAAC +
Preference number: 4 (lower is better)
Translates to: SSAPPQSLGKGAPAGSTMMRSSS*SWNLVN
Trigger: GTTTACCAAGTTCCAGCTCCAGGAACTGGAGCGCAT...CATGGTGCTCCCTGCAGGGGCACCTTTCCCTAGAGATTGTGGAGGAGCGCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS-3UTR GCA 90 bp AAAATCTCATCTGCTTCTGTCTTCTGGGCACAGTTGGTTCTCCAGCGCTCCTCCCCTCAAGGCCCTTTGTaGCCCCAGGGATCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: KISSASVFWAQLVLQRSSPQGPL*PQGSAP
Trigger: AGGAGCTGATCCCTGGGGGCACAAAGGGCCTTGAGG...GGAGGAGCGCTGGAGAACCAACTGTGCCCAGAAGACAGAAGCAGATGAGATTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS-3UTR TCA 90 bp CATCTGCTTCTGTCTTCTGGGCACAGTTGGTTCTCCAGCGCTCCTCCACAATCTATCAGCTCCTCTCCTTaGCCCCTATCCTCGCCATTG +
Preference number: 4 (lower is better)
Translates to: HLLLSSGHSWFSSAPPQSISSSP*PLSSPL
Trigger: CAATGGCGAGGATAGGGGTCAAGGAGAGGAGCTGAT...AGATTGTGGAGGAGCGCTGGAGAACCAACTGTGCCCAGAAGACAGAAGCAGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS-3UTR GCA 90 bp ATCTGCTTCTGTCTTCTGGGCACAGTTGGTTCTCCAGCGCTCCTCCACAATCTCGGCGGCGGCTGCTGCTaGTTCTTCTTCTTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: ICFCLLGTVGSPALLHNLGGGCC*FFFFFF
Trigger: GAAGAAGAAGAAGAAGAAGCAGCAGCAGCCGCCGCC...GAGATTGTGGAGGAGCGCTGGAGAACCAACTGTGCCCAGAAGACAGAAGCAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS-3UTR GCA 90 bp TCTCATCTGCTTCTGTCTTCTGGGCACAGTTGGTTCTCCAGCGCTCCTCCACAAGCAGTCCTGTATACCTaGGTTCTCCTCTCTCTCCTT +
Preference number: 4 (lower is better)
Translates to: SHLLLSSGHSWFSSAPPQAVLYT*VLLSLL
Trigger: AAGGAGAGAGAGGAGAACGCAGGTATACAGGACTGC...TTGTGGAGGAGCGCTGGAGAACCAACTGTGCCCAGAAGACAGAAGCAGATGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS TCA 90 bp ATTGCTGCTGGCCCCGGCATCATGGCTTCTGTCATCTACTGGGGCTaGACTGCCAGCAGTAGTTTCATCTCTGGCGGCGGCGGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: IAAGPGIMASVIYWG*TASSSFISGGGGCC
Trigger: GCAGCAGCCGCCGCCGCCAGAGATGAAACTACTGCTGGCAGTTCAGCCCCAGTAGATGACAGAAGCCATGATGCCGGGGCCAGCAGCAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS-3UTR CAA 90 bp AGCGCTCCTCCACAATCTCTAGGGAAAGGTGCCCCTGCAGGGAGCACCATGAGAGAGCCTCAAGGCCCTTaGTGCCCCCAGGGATCAGCT +
Preference number: 5 (lower is better)
Translates to: SAPPQSLGKGAPAGSTMREPQGP*CPQGSA
Trigger: AGCTGATCCCTGGGGGCACAAAGGGCCTTGAGGCTC...TCTCATGGTGCTCCCTGCAGGGGCACCTTTCCCTAGAGATTGTGGAGGAGCGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS-3UTR CAA 90 bp GTTCTCCAGCGCTCCTCCACAATCTCTAGGGAAAGGTGCCCCTGCAGGGAGCACGATCAGCTCCTCTCCTaGACCCCTATCCTCGCCATT +
Preference number: 5 (lower is better)
Translates to: VLQRSSTISRERCPCREHDQLLS*TPILAI
Trigger: AATGGCGAGGATAGGGGTCAAGGAGAGGAGCTGATC...GTGCTCCCTGCAGGGGCACCTTTCCCTAGAGATTGTGGAGGAGCGCTGGAGAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS CCA 90 bp CAGTCACACCTATCCATCTCGCGAGCTCCCTTCGGGCCGCAGCACTaGGATAGTGATTGCGTTCGAAAATGCGCTCCAGTTCCTGGAGCT +
Preference number: 5 (lower is better)
Translates to: QSHLSISRAPFGPQH*DSDCVRKCAPVPGA
Trigger: AGCTCCAGGAACTGGAGCGCATTTTCGAACGCAATCACTATCCCAGTGCTGCGGCCCGAAGGGAGCTCGCGAGATGGATAGGTGTGACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS-3UTR CAA 90 bp CTCATCTGCTTCTGTCTTCTGGGCACAGTTGGTTCTCCAGCGCTCCTCCACAATGCTGGCCTGATGGACTaGGGAGAGCCTCAAGGCCCT +
Preference number: 5 (lower is better)
Translates to: LICFCLLGTVGSPALLHNAGLMD*GEPQGP
Trigger: AGGGCCTTGAGGCTCTCCCAAGTCCATCAGGCCAGC...ATTGTGGAGGAGCGCTGGAGAACCAACTGTGCCCAGAAGACAGAAGCAGATGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS-3UTR CAA 90 bp AGCGCTCCTCCACAATCTCTAGGGAAAGGTGCCCCTGCAGGGAGCACCATGAGACGACTGGGTGACTTCTaGAGGTTCCATAGCATGGAT +
Preference number: 5 (lower is better)
Translates to: SAPPQSLGKGAPAGSTMRRLGDF*RFHSMD
Trigger: ATCCATGCTATGGAACCTCAAGAAGTCACCCAGTCG...TCTCATGGTGCTCCCTGCAGGGGCACCTTTCCCTAGAGATTGTGGAGGAGCGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS TCA 90 bp TCTTTAATTTCATCATCTCTCAGAAGAGACGACTGGGTGACTTCTTaGGGTTCCATAGCATGGATGCTGTTGACGGTGCTCCTGCTTCTG +
Preference number: 5 (lower is better)
Translates to: SLISSSLRRDDWVTS*GSIAWMLLTVLLLL
Trigger: CAGAAGCAGGAGCACCGTCAACAGCATCCATGCTATGGAACCTCAAGAAGTCACCCAGTCGTCTCTTCTGAGAGATGATGAAATTAAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS CAA 72 bp GCTGGCCTGATGGACTTGGGAGAGCCTCAAGGCCCTTaGTGCCCCCAGGGATCAGCTCCTCTCCTTGACCCC +
Preference number: 6 (lower is better)
Translates to: AGLMDLGEPQGP*CPQGSAPLLDP
Trigger: GGGGTCAAGGAGAGGAGCTGATCCCTGGGGGCACAAAGGGCCTTGAGGCTCTCCCAAGTCCATCAGGCCAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS CAA 72 bp ACCTGTAGCGGTTGCGGGGTAGCTGGCCTGATGGACTaGGGAGAGCCTCAAGGCCCTTTGTGCCCCCAGGGA +
Preference number: 6 (lower is better)
Translates to: TCSGCGVAGLMD*GEPQGPLCPQG
Trigger: TCCCTGGGGGCACAAAGGGCCTTGAGGCTCTCCCAAGTCCATCAGGCCAGCTACCCCGCAACCGCTACAGGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS GCA 72 bp GGCCTGATGGACTTGGGAGAGCCTCAAGGCCCTTTGTaGCCCCAGGGATCAGCTCCTCTCCTTGACCCCTAT +
Preference number: 6 (lower is better)
Translates to: GLMDLGEPQGPL*PQGSAPLLDPY
Trigger: ATAGGGGTCAAGGAGAGGAGCTGATCCCTGGGGGCACAAAGGGCCTTGAGGCTCTCCCAAGTCCATCAGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS CCA 72 bp GCTCCTCTCCTTGACCCCTATCCTCGCCATTGCTGCTaGCCCCGGCATCATGGCTTCTGTCATCTACTGGGG +
Preference number: 6 (lower is better)
Translates to: APLLDPYPRHCC*PRHHGFCHLLG
Trigger: CCCCAGTAGATGACAGAAGCCATGATGCCGGGGCCAGCAGCAATGGCGAGGATAGGGGTCAAGGAGAGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS GCA 72 bp CGAGCTCCCTTCGGGCCGCAGCACTGGGATAGTGATTaGGTTCGAAAATGCGCTCCAGTTCCTGGAGCTGGA +
Preference number: 6 (lower is better)
Translates to: RAPFGPQHWDSD*VRKCAPVPGAG
Trigger: TCCAGCTCCAGGAACTGGAGCGCATTTTCGAACGCAATCACTATCCCAGTGCTGCGGCCCGAAGGGAGCTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS GCA 72 bp TCAGCTCCTCTCCTTGACCCCTATCCTCGCCATTGCTaGTGGCCCCGGCATCATGGCTTCTGTCATCTACTG +
Preference number: 6 (lower is better)
Translates to: SAPLLDPYPRHC*WPRHHGFCHLL
Trigger: CAGTAGATGACAGAAGCCATGATGCCGGGGCCAGCAGCAATGGCGAGGATAGGGGTCAAGGAGAGGAGCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS GCA 72 bp GCCAGCAGTAGTTTCATCTCTGGCGGCGGCGGCTGCTaGTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC +
Preference number: 6 (lower is better)
Translates to: ASSSFISGGGGC*CFFFFFFFFFF
Trigger: GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGCAGCAGCCGCCGCCGCCAGAGATGAAACTACTGCTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS GCA 72 bp ACTGCCAGCAGTAGTTTCATCTCTGGCGGCGGCGGCTaGTGCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTC +
Preference number: 6 (lower is better)
Translates to: TASSSFISGGGG*CCFFFFFFFFF
Trigger: GAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGCAGCAGCCGCCGCCGCCAGAGATGAAACTACTGCTGGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS TCA 72 bp TCATCATCTCTCAGAAGAGACGACTGGGTGACTTCTTaGGGTTCCATAGCATGGATGCTGTTGACGGTGCTC +
Preference number: 6 (lower is better)
Translates to: SSSLRRDDWVTS*GSIAWMLLTVL
Trigger: GAGCACCGTCAACAGCATCCATGCTATGGAACCTCAAGAAGTCACCCAGTCGTCTCTTCTGAGAGATGATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS CAA 72 bp TTCATCATCTCTCAGAAGAGACGACTGGGTGACTTCTaGAGGTTCCATAGCATGGATGCTGTTGACGGTGCT +
Preference number: 6 (lower is better)
Translates to: FIISQKRRLGDF*RFHSMDAVDGA
Trigger: AGCACCGTCAACAGCATCCATGCTATGGAACCTCAAGAAGTCACCCAGTCGTCTCTTCTGAGAGATGATGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7
CDS CAA 90 bp TTCTTTAATTTCATCATCTCTCAGAAGAGACGACTGGGTGACTTCTaGAGGTTCCATAGCATGGATGCTGTTGACGGTGCTCCTGCTTCT +
Preference number: 6 (lower is better)
Translates to: FFNFIISQKRRLGDF*RFHSMDAVDGAPAS
Trigger: AGAAGCAGGAGCACCGTCAACAGCATCCATGCTATGGAACCTCAAGAAGTCACCCAGTCGTCTCTTCTGAGAGATGATGAAATTAAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071885.7