Pregenerated sensors for RHOX8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000064137Ensembl transcript IDs: ENSMUST00000071885.7
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | TTGGTGGCAGCAAAATCTCATCTGCTTCTGTCTTCTGGGCACAGTTaGTTCTCCAGCGCTCCTCCACAATCTCTAGGGAAAGGTGCCCCT | + |
Preference number: 1 (lower is better) Translates to: LVAAKSHLLLSSGHS*FSSAPPQSLGKGAP Trigger: AGGGGCACCTTTCCCTAGAGATTGTGGAGGAGCGCTGGAGAACCAACTGTGCCCAGAAGACAGAAGCAGATGAGATTTTGCTGCCACCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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3UTR CAA 90 bp | GTTGGTGGCAGCAAAATCTCATCTGCTTCTGTCTTCTGGGCACAGTaGGTTCTCCAGCGCTCCTCCACAATCTCTAGGGAAAGGTGCCCC | + |
Preference number: 2 (lower is better) Translates to: VGGSKISSASVFWAQ*VLQRSSTISRERCP Trigger: GGGGCACCTTTCCCTAGAGATTGTGGAGGAGCGCTGGAGAACCAACTGTGCCCAGAAGACAGAAGCAGATGAGATTTTGCTGCCACCAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS-3UTR GCA 90 bp | TTCTCCAGCGCTCCTCCACAATCTCTAGGGAAAGGTGCCCCTGCAGGGAGCACCGGCGGCGGCGGCTGCTaGTGCTTCTTCTTCTTCTTC | + |
Preference number: 4 (lower is better) Translates to: FSSAPPQSLGKGAPAGSTGGGGC*CFFFFF Trigger: GAAGAAGAAGAAGAAGCAGCAGCAGCCGCCGCCGCC...GGTGCTCCCTGCAGGGGCACCTTTCCCTAGAGATTGTGGAGGAGCGCTGGAGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS-3UTR GCA 90 bp | TGGTTCTCCAGCGCTCCTCCACAATCTCTAGGGAAAGGTGCCCCTGCAGGGAGCTCTGGCGGCGGCGGCTaGTGCTGCTTCTTCTTCTTC | + |
Preference number: 4 (lower is better) Translates to: WFSSAPPQSLGKGAPAGSSGGGG*CCFFFF Trigger: GAAGAAGAAGAAGCAGCAGCAGCCGCCGCCGCCAGA...GCTCCCTGCAGGGGCACCTTTCCCTAGAGATTGTGGAGGAGCGCTGGAGAACCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS-3UTR CCA 90 bp | AGCGCTCCTCCACAATCTCTAGGGAAAGGTGCCCCTGCAGGGAGCACCATGAGACGGTTGCGGGGTAGCTaGCCTGATGGACTTGGGAGA | + |
Preference number: 4 (lower is better) Translates to: SAPPQSLGKGAPAGSTMRRLRGS*PDGLGR Trigger: TCTCCCAAGTCCATCAGGCCAGCTACCCCGCAACCG...TCTCATGGTGCTCCCTGCAGGGGCACCTTTCCCTAGAGATTGTGGAGGAGCGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS-3UTR CCA 90 bp | TCCAGCGCTCCTCCACAATCTCTAGGGAAAGGTGCCCCTGCAGGGAGCACCATGATGCGCTCCAGTTCCTaGAGCTGGAACTTGGTAAAC | + |
Preference number: 4 (lower is better) Translates to: SSAPPQSLGKGAPAGSTMMRSSS*SWNLVN Trigger: GTTTACCAAGTTCCAGCTCCAGGAACTGGAGCGCAT...CATGGTGCTCCCTGCAGGGGCACCTTTCCCTAGAGATTGTGGAGGAGCGCTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS-3UTR GCA 90 bp | AAAATCTCATCTGCTTCTGTCTTCTGGGCACAGTTGGTTCTCCAGCGCTCCTCCCCTCAAGGCCCTTTGTaGCCCCAGGGATCAGCTCCT | + |
Preference number: 4 (lower is better) Translates to: KISSASVFWAQLVLQRSSPQGPL*PQGSAP Trigger: AGGAGCTGATCCCTGGGGGCACAAAGGGCCTTGAGG...GGAGGAGCGCTGGAGAACCAACTGTGCCCAGAAGACAGAAGCAGATGAGATTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS-3UTR TCA 90 bp | CATCTGCTTCTGTCTTCTGGGCACAGTTGGTTCTCCAGCGCTCCTCCACAATCTATCAGCTCCTCTCCTTaGCCCCTATCCTCGCCATTG | + |
Preference number: 4 (lower is better) Translates to: HLLLSSGHSWFSSAPPQSISSSP*PLSSPL Trigger: CAATGGCGAGGATAGGGGTCAAGGAGAGGAGCTGAT...AGATTGTGGAGGAGCGCTGGAGAACCAACTGTGCCCAGAAGACAGAAGCAGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS-3UTR GCA 90 bp | ATCTGCTTCTGTCTTCTGGGCACAGTTGGTTCTCCAGCGCTCCTCCACAATCTCGGCGGCGGCTGCTGCTaGTTCTTCTTCTTCTTCTTC | + |
Preference number: 4 (lower is better) Translates to: ICFCLLGTVGSPALLHNLGGGCC*FFFFFF Trigger: GAAGAAGAAGAAGAAGAAGCAGCAGCAGCCGCCGCC...GAGATTGTGGAGGAGCGCTGGAGAACCAACTGTGCCCAGAAGACAGAAGCAGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS-3UTR GCA 90 bp | TCTCATCTGCTTCTGTCTTCTGGGCACAGTTGGTTCTCCAGCGCTCCTCCACAAGCAGTCCTGTATACCTaGGTTCTCCTCTCTCTCCTT | + |
Preference number: 4 (lower is better) Translates to: SHLLLSSGHSWFSSAPPQAVLYT*VLLSLL Trigger: AAGGAGAGAGAGGAGAACGCAGGTATACAGGACTGC...TTGTGGAGGAGCGCTGGAGAACCAACTGTGCCCAGAAGACAGAAGCAGATGAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS TCA 90 bp | ATTGCTGCTGGCCCCGGCATCATGGCTTCTGTCATCTACTGGGGCTaGACTGCCAGCAGTAGTTTCATCTCTGGCGGCGGCGGCTGCTGC | + |
Preference number: 5 (lower is better) Translates to: IAAGPGIMASVIYWG*TASSSFISGGGGCC Trigger: GCAGCAGCCGCCGCCGCCAGAGATGAAACTACTGCTGGCAGTTCAGCCCCAGTAGATGACAGAAGCCATGATGCCGGGGCCAGCAGCAAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS-3UTR CAA 90 bp | AGCGCTCCTCCACAATCTCTAGGGAAAGGTGCCCCTGCAGGGAGCACCATGAGAGAGCCTCAAGGCCCTTaGTGCCCCCAGGGATCAGCT | + |
Preference number: 5 (lower is better) Translates to: SAPPQSLGKGAPAGSTMREPQGP*CPQGSA Trigger: AGCTGATCCCTGGGGGCACAAAGGGCCTTGAGGCTC...TCTCATGGTGCTCCCTGCAGGGGCACCTTTCCCTAGAGATTGTGGAGGAGCGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS-3UTR CAA 90 bp | GTTCTCCAGCGCTCCTCCACAATCTCTAGGGAAAGGTGCCCCTGCAGGGAGCACGATCAGCTCCTCTCCTaGACCCCTATCCTCGCCATT | + |
Preference number: 5 (lower is better) Translates to: VLQRSSTISRERCPCREHDQLLS*TPILAI Trigger: AATGGCGAGGATAGGGGTCAAGGAGAGGAGCTGATC...GTGCTCCCTGCAGGGGCACCTTTCCCTAGAGATTGTGGAGGAGCGCTGGAGAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS CCA 90 bp | CAGTCACACCTATCCATCTCGCGAGCTCCCTTCGGGCCGCAGCACTaGGATAGTGATTGCGTTCGAAAATGCGCTCCAGTTCCTGGAGCT | + |
Preference number: 5 (lower is better) Translates to: QSHLSISRAPFGPQH*DSDCVRKCAPVPGA Trigger: AGCTCCAGGAACTGGAGCGCATTTTCGAACGCAATCACTATCCCAGTGCTGCGGCCCGAAGGGAGCTCGCGAGATGGATAGGTGTGACTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS-3UTR CAA 90 bp | CTCATCTGCTTCTGTCTTCTGGGCACAGTTGGTTCTCCAGCGCTCCTCCACAATGCTGGCCTGATGGACTaGGGAGAGCCTCAAGGCCCT | + |
Preference number: 5 (lower is better) Translates to: LICFCLLGTVGSPALLHNAGLMD*GEPQGP Trigger: AGGGCCTTGAGGCTCTCCCAAGTCCATCAGGCCAGC...ATTGTGGAGGAGCGCTGGAGAACCAACTGTGCCCAGAAGACAGAAGCAGATGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS-3UTR CAA 90 bp | AGCGCTCCTCCACAATCTCTAGGGAAAGGTGCCCCTGCAGGGAGCACCATGAGACGACTGGGTGACTTCTaGAGGTTCCATAGCATGGAT | + |
Preference number: 5 (lower is better) Translates to: SAPPQSLGKGAPAGSTMRRLGDF*RFHSMD Trigger: ATCCATGCTATGGAACCTCAAGAAGTCACCCAGTCG...TCTCATGGTGCTCCCTGCAGGGGCACCTTTCCCTAGAGATTGTGGAGGAGCGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS TCA 90 bp | TCTTTAATTTCATCATCTCTCAGAAGAGACGACTGGGTGACTTCTTaGGGTTCCATAGCATGGATGCTGTTGACGGTGCTCCTGCTTCTG | + |
Preference number: 5 (lower is better) Translates to: SLISSSLRRDDWVTS*GSIAWMLLTVLLLL Trigger: CAGAAGCAGGAGCACCGTCAACAGCATCCATGCTATGGAACCTCAAGAAGTCACCCAGTCGTCTCTTCTGAGAGATGATGAAATTAAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS CAA 72 bp | GCTGGCCTGATGGACTTGGGAGAGCCTCAAGGCCCTTaGTGCCCCCAGGGATCAGCTCCTCTCCTTGACCCC | + |
Preference number: 6 (lower is better) Translates to: AGLMDLGEPQGP*CPQGSAPLLDP Trigger: GGGGTCAAGGAGAGGAGCTGATCCCTGGGGGCACAAAGGGCCTTGAGGCTCTCCCAAGTCCATCAGGCCAGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS CAA 72 bp | ACCTGTAGCGGTTGCGGGGTAGCTGGCCTGATGGACTaGGGAGAGCCTCAAGGCCCTTTGTGCCCCCAGGGA | + |
Preference number: 6 (lower is better) Translates to: TCSGCGVAGLMD*GEPQGPLCPQG Trigger: TCCCTGGGGGCACAAAGGGCCTTGAGGCTCTCCCAAGTCCATCAGGCCAGCTACCCCGCAACCGCTACAGGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS GCA 72 bp | GGCCTGATGGACTTGGGAGAGCCTCAAGGCCCTTTGTaGCCCCAGGGATCAGCTCCTCTCCTTGACCCCTAT | + |
Preference number: 6 (lower is better) Translates to: GLMDLGEPQGPL*PQGSAPLLDPY Trigger: ATAGGGGTCAAGGAGAGGAGCTGATCCCTGGGGGCACAAAGGGCCTTGAGGCTCTCCCAAGTCCATCAGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS CCA 72 bp | GCTCCTCTCCTTGACCCCTATCCTCGCCATTGCTGCTaGCCCCGGCATCATGGCTTCTGTCATCTACTGGGG | + |
Preference number: 6 (lower is better) Translates to: APLLDPYPRHCC*PRHHGFCHLLG Trigger: CCCCAGTAGATGACAGAAGCCATGATGCCGGGGCCAGCAGCAATGGCGAGGATAGGGGTCAAGGAGAGGAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS GCA 72 bp | CGAGCTCCCTTCGGGCCGCAGCACTGGGATAGTGATTaGGTTCGAAAATGCGCTCCAGTTCCTGGAGCTGGA | + |
Preference number: 6 (lower is better) Translates to: RAPFGPQHWDSD*VRKCAPVPGAG Trigger: TCCAGCTCCAGGAACTGGAGCGCATTTTCGAACGCAATCACTATCCCAGTGCTGCGGCCCGAAGGGAGCTCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS GCA 72 bp | TCAGCTCCTCTCCTTGACCCCTATCCTCGCCATTGCTaGTGGCCCCGGCATCATGGCTTCTGTCATCTACTG | + |
Preference number: 6 (lower is better) Translates to: SAPLLDPYPRHC*WPRHHGFCHLL Trigger: CAGTAGATGACAGAAGCCATGATGCCGGGGCCAGCAGCAATGGCGAGGATAGGGGTCAAGGAGAGGAGCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS GCA 72 bp | GCCAGCAGTAGTTTCATCTCTGGCGGCGGCGGCTGCTaGTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC | + |
Preference number: 6 (lower is better) Translates to: ASSSFISGGGGC*CFFFFFFFFFF Trigger: GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGCAGCAGCCGCCGCCGCCAGAGATGAAACTACTGCTGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS GCA 72 bp | ACTGCCAGCAGTAGTTTCATCTCTGGCGGCGGCGGCTaGTGCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTC | + |
Preference number: 6 (lower is better) Translates to: TASSSFISGGGG*CCFFFFFFFFF Trigger: GAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGCAGCAGCCGCCGCCGCCAGAGATGAAACTACTGCTGGCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS TCA 72 bp | TCATCATCTCTCAGAAGAGACGACTGGGTGACTTCTTaGGGTTCCATAGCATGGATGCTGTTGACGGTGCTC | + |
Preference number: 6 (lower is better) Translates to: SSSLRRDDWVTS*GSIAWMLLTVL Trigger: GAGCACCGTCAACAGCATCCATGCTATGGAACCTCAAGAAGTCACCCAGTCGTCTCTTCTGAGAGATGATGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS CAA 72 bp | TTCATCATCTCTCAGAAGAGACGACTGGGTGACTTCTaGAGGTTCCATAGCATGGATGCTGTTGACGGTGCT | + |
Preference number: 6 (lower is better) Translates to: FIISQKRRLGDF*RFHSMDAVDGA Trigger: AGCACCGTCAACAGCATCCATGCTATGGAACCTCAAGAAGTCACCCAGTCGTCTCTTCTGAGAGATGATGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |
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CDS CAA 90 bp | TTCTTTAATTTCATCATCTCTCAGAAGAGACGACTGGGTGACTTCTaGAGGTTCCATAGCATGGATGCTGTTGACGGTGCTCCTGCTTCT | + |
Preference number: 6 (lower is better) Translates to: FFNFIISQKRRLGDF*RFHSMDAVDGAPAS Trigger: AGAAGCAGGAGCACCGTCAACAGCATCCATGCTATGGAACCTCAAGAAGTCACCCAGTCGTCTCTTCTGAGAGATGATGAAATTAAAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071885.7 |