RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RHOX7B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079626

Ensembl transcript IDs: ENSMUST00000115156.2

Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp AAAGATGCAATAACACTTTGGTGGAAGCAAGCAAGTGGCTCCTGGTCAAGGGTGGGATCTGGTGCCTCCTaGCCTGGCGCTGGGGATCCC +
Preference number: 4 (lower is better)
Translates to: KDAITLWWKQASGSWSRVGSGAS*PGAGDP
Trigger: GGGATCCCCAGCGCCAGGGCAGGAGGCACCAGATCC...CACCCTTGACCAGGAGCCACTTGCTTGCTTCCACCAAAGTGTTATTGCATCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS-3UTR CCA 90 bp AAGTGCTTAGGGAATAAAGATGCAATAACACTTTGGTGGAAGCAAGCAAGTGGCTGGTGCCTCCTGCCCTaGCGCTGGGGATCCCTAGTG +
Preference number: 4 (lower is better)
Translates to: KCLGNKDAITLWWKQASGWCLLP*RWGSLV
Trigger: CACTAGGGATCCCCAGCGCCAGGGCAGGAGGCACCA...GCCACTTGCTTGCTTCCACCAAAGTGTTATTGCATCTTTATTCCCTAAGCACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS-3UTR CCA 90 bp GATGCAATAACACTTTGGTGGAAGCAAGCAAGTGGCTCCTGGTCAAGGGTGGTACAGCTCCTGCAGCTGTaGCTCTGTAAATCTGTCCCG +
Preference number: 4 (lower is better)
Translates to: DAITLWWKQASGSWSRVVQLLQL*LCKSVP
Trigger: CGGGACAGATTTACAGAGCCACAGCTGCAGGAGCTG...TACCACCCTTGACCAGGAGCCACTTGCTTGCTTCCACCAAAGTGTTATTGCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS-3UTR GCA 90 bp AGATGCAATAACACTTTGGTGGAAGCAAGCAAGTGGCTCCTGGTCAAGGGTGGTCACACCCATTCCCCTTaGCAGCTGTTTTCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: RCNNTLVEASKWLLVKGGHTHSP*QLFSFF
Trigger: GAAGAAGGAAAACAGCTGGCAAGGGGAATGGGTGTG...ACCACCCTTGACCAGGAGCCACTTGCTTGCTTCCACCAAAGTGTTATTGCATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS-3UTR GCA 90 bp TTAGGGAATAAAGATGCAATAACACTTTGGTGGAAGCAAGCAAGTGGCTCCTGGATGGTCTCCATCTCCTaGACTTGCCAGGGTGTGAAG +
Preference number: 4 (lower is better)
Translates to: LGNKDAITLWWKQASGSWMVSIS*TCQGVK
Trigger: CTTCACACCCTGGCAAGTGCAGGAGATGGAGACCAT...CCAGGAGCCACTTGCTTGCTTCCACCAAAGTGTTATTGCATCTTTATTCCCTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS-3UTR GCA 90 bp AATAAAGATGCAATAACACTTTGGTGGAAGCAAGCAAGTGGCTCCTGGTCAAGGTGTGCTCCTGAGCATTaGTTTCTTCTCCCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: NKDAITLWWKQASGSWSRCAPEH*FLLPGP
Trigger: AGGGCCAGGGAGAAGAAAGCAATGCTCAGGAGCACA...CCTTGACCAGGAGCCACTTGCTTGCTTCCACCAAAGTGTTATTGCATCTTTATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS-3UTR CCA 90 bp TTCACATTCAAGTGCTTAGGGAATAAAGATGCAATAACACTTTGGTGGAAGCAACTCCTGCCCTGGCGCTaGGGATCCCTAGTGAACCCA +
Preference number: 4 (lower is better)
Translates to: FTFKCLGNKDAITLWWKQLLPWR*GSLVNP
Trigger: TGGGTTCACTAGGGATCCCCAGCGCCAGGGCAGGAG...TTGCTTCCACCAAAGTGTTATTGCATCTTTATTCCCTAAGCACTTGAATGTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS-3UTR GCA 90 bp AATAAAGATGCAATAACACTTTGGTGGAAGCAAGCAAGTGGCTCCTGGTCAAGGACCTGTTCCAGCTCCTaGAGCTGTGGCTCTGTAAAT +
Preference number: 4 (lower is better)
Translates to: NKDAITLWWKQASGSWSRTCSSS*SCGSVN
Trigger: ATTTACAGAGCCACAGCTGCAGGAGCTGGAACAGGT...CCTTGACCAGGAGCCACTTGCTTGCTTCCACCAAAGTGTTATTGCATCTTTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS-3UTR GCA 90 bp AAAGATGCAATAACACTTTGGTGGAAGCAAGCAAGTGGCTCCTGGTCAAGGGTGTTGTTAAACCTTATCTaGACCTTGGCTTCAGACCCA +
Preference number: 4 (lower is better)
Translates to: KDAITLWWKQASGSWSRVLLNLI*TLASDP
Trigger: TGGGTCTGAAGCCAAGGTGCAGATAAGGTTTAACAA...CACCCTTGACCAGGAGCCACTTGCTTGCTTCCACCAAAGTGTTATTGCATCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS-3UTR CCA 90 bp AATAAAGATGCAATAACACTTTGGTGGAAGCAAGCAAGTGGCTCCTGGTCAAGGGAGTCTCTTGGAACATaGTCTCCATCTCCTGCACTT +
Preference number: 4 (lower is better)
Translates to: NKDAITLWWKQASGSWSRESLGT*SPSPAL
Trigger: AAGTGCAGGAGATGGAGACCATGTTCCAAGAGACTC...CCTTGACCAGGAGCCACTTGCTTGCTTCCACCAAAGTGTTATTGCATCTTTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS-3UTR GCA 90 bp TTCAAGTGCTTAGGGAATAAAGATGCAATAACACTTTGGTGGAAGCAAGCAAGTTCCATCTCCTGCACTTaGCAGGGTGTGAAGGTGAAC +
Preference number: 4 (lower is better)
Translates to: FKCLGNKDAITLWWKQASSISCT*QGVKVN
Trigger: GTTCACCTTCACACCCTGGCAAGTGCAGGAGATGGA...ACTTGCTTGCTTCCACCAAAGTGTTATTGCATCTTTATTCCCTAAGCACTTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS-3UTR GCA 90 bp TTAGGGAATAAAGATGCAATAACACTTTGGTGGAAGCAAGCAAGTGGCTCCTGGTGTTCTCTCCTGAACTaGACTCTCCTCTTCTTAAAC +
Preference number: 4 (lower is better)
Translates to: LGNKDAITLWWKQASGSWCSLLN*TLLFLN
Trigger: GTTTAAGAAGAGGAGAGTGCAGTTCAGGAGAGAACA...CCAGGAGCCACTTGCTTGCTTCCACCAAAGTGTTATTGCATCTTTATTCCCTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS CCA 90 bp TCGGGATCCCACACGCTGCCTCCGCTGGGCACGAGGCACCAGCACTaGCACAGGGTGCACGTCCTCGGTGCCCCACCTACACTCAGGGAC +
Preference number: 5 (lower is better)
Translates to: SGSHTLPPLGTRHQH*HRVHVLGAPPTLRD
Trigger: GTCCCTGAGTGTAGGTGGGGCACCGAGGACGTGCACCCTGTGCCAGTGCTGGTGCCTCGTGCCCAGCGGAGGCAGCGTGTGGGATCCCGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS GCA 90 bp TCCATCTCCTGCACTTGCCAGGGTGTGAAGGTGAACTGGATCTGGTaGCTCCTGCCCTGGCGCTGGGGATCCCTAGTGAACCCATCGCTC +
Preference number: 5 (lower is better)
Translates to: SISCTCQGVKVNWIW*LLPWRWGSLVNPSL
Trigger: GAGCGATGGGTTCACTAGGGATCCCCAGCGCCAGGGCAGGAGGCACCAGATCCAGTTCACCTTCACACCCTGGCAAGTGCAGGAGATGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS CCA 90 bp GTCTCCATCTCCTGCACTTGCCAGGGTGTGAAGGTGAACTGGATCTaGTGCCTCCTGCCCTGGCGCTGGGGATCCCTAGTGAACCCATCG +
Preference number: 5 (lower is better)
Translates to: VSISCTCQGVKVNWI*CLLPWRWGSLVNPS
Trigger: CGATGGGTTCACTAGGGATCCCCAGCGCCAGGGCAGGAGGCACCAGATCCAGTTCACCTTCACACCCTGGCAAGTGCAGGAGATGGAGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS CCA 90 bp AGCTCCTGCAGCTGTGGCTCTGTAAATCTGTCCCGGAGGGGGCGGTaGGGCACCAGCACTGGCACAGGCTGTACAGTGGACACCAAAACT +
Preference number: 5 (lower is better)
Translates to: SSCSCGSVNLSRRGR*GTSTGTGCTVDTKT
Trigger: AGTTTTGGTGTCCACTGTACAGCCTGTGCCAGTGCTGGTGCCCCACCGCCCCCTCCGGGACAGATTTACAGAGCCACAGCTGCAGGAGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS CCA 90 bp CAGGGTGTGAAGGTGAACTGGATCTGGTGCCTCCTGCCCTGGCGCTaGGGATCCCTAGTGAACCCATCGCTCTTTCTCTCCGAGTTGCCA +
Preference number: 5 (lower is better)
Translates to: QGVKVNWIWCLLPWR*GSLVNPSLFLSELP
Trigger: TGGCAACTCGGAGAGAAAGAGCGATGGGTTCACTAGGGATCCCCAGCGCCAGGGCAGGAGGCACCAGATCCAGTTCACCTTCACACCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS CCA 90 bp ACTTGCCAGGGTGTGAAGGTGAACTGGATCTGGTGCCTCCTGCCCTaGCGCTGGGGATCCCTAGTGAACCCATCGCTCTTTCTCTCCGAG +
Preference number: 5 (lower is better)
Translates to: TCQGVKVNWIWCLLP*RWGSLVNPSLFLSE
Trigger: CTCGGAGAGAAAGAGCGATGGGTTCACTAGGGATCCCCAGCGCCAGGGCAGGAGGCACCAGATCCAGTTCACCTTCACACCCTGGCAAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS CCA 90 bp AACATGGTCTCCATCTCCTGCACTTGCCAGGGTGTGAAGGTGAACTaGATCTGGTGCCTCCTGCCCTGGCGCTGGGGATCCCTAGTGAAC +
Preference number: 5 (lower is better)
Translates to: NMVSISCTCQGVKVN*IWCLLPWRWGSLVN
Trigger: GTTCACTAGGGATCCCCAGCGCCAGGGCAGGAGGCACCAGATCCAGTTCACCTTCACACCCTGGCAAGTGCAGGAGATGGAGACCATGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS TCA 90 bp TCCATGCTTCTGGCAAGCACCTCTCTTGTGAGCACATCTGGGTACTaGGTCTCTTGGAACATGGTCTCCATCTCCTGCACTTGCCAGGGT +
Preference number: 5 (lower is better)
Translates to: SMLLASTSLVSTSGY*VSWNMVSISCTCQG
Trigger: ACCCTGGCAAGTGCAGGAGATGGAGACCATGTTCCAAGAGACTCAGTACCCAGATGTGCTCACAAGAGAGGTGCTTGCCAGAAGCATGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS TCA 90 bp CCTTGGCTTCAGACCCATCCATGCTTCTGGCAAGCACCTCTCTTGTaGGCACATCTGGGTACTGAGTCTCTTGGAACATGGTCTCCATCT +
Preference number: 5 (lower is better)
Translates to: PWLQTHPCFWQAPLL*AHLGTESLGTWSPS
Trigger: AGATGGAGACCATGTTCCAAGAGACTCAGTACCCAGATGTGCTCACAAGAGAGGTGCTTGCCAGAAGCATGGATGGGTCTGAAGCCAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS CCA 90 bp AGACCCATCCATGCTTCTGGCAAGCACCTCTCTTGTGAGCACATCTaGGTACTGAGTCTCTTGGAACATGGTCTCCATCTCCTGCACTTG +
Preference number: 5 (lower is better)
Translates to: RPIHASGKHLSCEHI*VLSLLEHGLHLLHL
Trigger: CAAGTGCAGGAGATGGAGACCATGTTCCAAGAGACTCAGTACCCAGATGTGCTCACAAGAGAGGTGCTTGCCAGAAGCATGGATGGGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS-3UTR CAA 90 bp AATAAAGATGCAATAACACTTTGGTGGAAGCAAGCAAGTGGCTCCTGGTCAAGGAACCTTATCTGCACCTaGGCTTCAGACCCATCCATG +
Preference number: 5 (lower is better)
Translates to: NKDAITLWWKQASGSWSRNLICT*ASDPSM
Trigger: CATGGATGGGTCTGAAGCCAAGGTGCAGATAAGGTT...CCTTGACCAGGAGCCACTTGCTTGCTTCCACCAAAGTGTTATTGCATCTTTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS-3UTR CAA 90 bp AATAAAGATGCAATAACACTTTGGTGGAAGCAAGCAAGTGGCTCCTGGTCAAGGAACCATCTCTGCAACTaGGCCTCAGTCACACCCATT +
Preference number: 5 (lower is better)
Translates to: NKDAITLWWKQASGSWSRNHLCN*ASVTPI
Trigger: AATGGGTGTGACTGAGGCCAAGTTGCAGAGATGGTT...CCTTGACCAGGAGCCACTTGCTTGCTTCCACCAAAGTGTTATTGCATCTTTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS-3UTR CAA 90 bp TTCACATTCAAGTGCTTAGGGAATAAAGATGCAATAACACTTTGGTGGAAGCAATGGGTACTGAGTCTCTaGGAACATGGTCTCCATCTC +
Preference number: 5 (lower is better)
Translates to: FTFKCLGNKDAITLWWKQWVLSL*EHGLHL
Trigger: GAGATGGAGACCATGTTCCAAGAGACTCAGTACCCA...TTGCTTCCACCAAAGTGTTATTGCATCTTTATTCCCTAAGCACTTGAATGTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS GCA 72 bp CTCCGCTGGGCACGAGGCACCAGCACTGGCACAGGGTaGACGTCCTCGGTGCCCCACCTACACTCAGGGACC +
Preference number: 6 (lower is better)
Translates to: LRWARGTSTGTG*TSSVPHLHSGT
Trigger: GGTCCCTGAGTGTAGGTGGGGCACCGAGGACGTGCACCCTGTGCCAGTGCTGGTGCCTCGTGCCCAGCGGAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS CCA 72 bp CACACGCTGCCTCCGCTGGGCACGAGGCACCAGCACTaGCACAGGGTGCACGTCCTCGGTGCCCCACCTACA +
Preference number: 6 (lower is better)
Translates to: HTLPPLGTRHQH*HRVHVLGAPPT
Trigger: TGTAGGTGGGGCACCGAGGACGTGCACCCTGTGCCAGTGCTGGTGCCTCGTGCCCAGCGGAGGCAGCGTGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS GCA 72 bp GAGGCACCAGCACTGGCACAGGGTGCACGTCCTCGGTaGCCCACCTACACTCAGGGACCTGATTCTGAGGCC +
Preference number: 6 (lower is better)
Translates to: EAPALAQGARPR*PTYTQGPDSEA
Trigger: GGCCTCAGAATCAGGTCCCTGAGTGTAGGTGGGGCACCGAGGACGTGCACCCTGTGCCAGTGCTGGTGCCTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS CCA 72 bp TCCATCTCCTGCACTTGCCAGGGTGTGAAGGTGAACTaGATCTGGTGCCTCCTGCCCTGGCGCTGGGGATCC +
Preference number: 6 (lower is better)
Translates to: SISCTCQGVKVN*IWCLLPWRWGS
Trigger: GGATCCCCAGCGCCAGGGCAGGAGGCACCAGATCCAGTTCACCTTCACACCCTGGCAAGTGCAGGAGATGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS GCA 72 bp TGCACTTGCCAGGGTGTGAAGGTGAACTGGATCTGGTaGCTCCTGCCCTGGCGCTGGGGATCCCTAGTGAAC +
Preference number: 6 (lower is better)
Translates to: CTCQGVKVNWIW*LLPWRWGSLVN
Trigger: GTTCACTAGGGATCCCCAGCGCCAGGGCAGGAGGCACCAGATCCAGTTCACCTTCACACCCTGGCAAGTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS CCA 72 bp GGTGTGAAGGTGAACTGGATCTGGTGCCTCCTGCCCTaGCGCTGGGGATCCCTAGTGAACCCATCGCTCTTT +
Preference number: 6 (lower is better)
Translates to: GVKVNWIWCLLP*RWGSLVNPSLF
Trigger: AAAGAGCGATGGGTTCACTAGGGATCCCCAGCGCCAGGGCAGGAGGCACCAGATCCAGTTCACCTTCACACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS CCA 72 bp GTTTCTCTGGAAAACCTGTTCCAGCTCCTGCAGCTGTaGCTCTGTAAATCTGTCCCGGAGGGGGCGGTGGGG +
Preference number: 6 (lower is better)
Translates to: VSLENLFQLLQL*LCKSVPEGAVG
Trigger: CCCCACCGCCCCCTCCGGGACAGATTTACAGAGCCACAGCTGCAGGAGCTGGAACAGGTTTTCCAGAGAAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS CCA 72 bp CATTCTGCTGCTGAGGCTCCCAGCCCAGGGGAGGACTaGTCACGTGAATCTTCCCCATTTCTTTCCTCACCA +
Preference number: 6 (lower is better)
Translates to: HSAAEAPSPGED*SRESSPFLSSP
Trigger: TGGTGAGGAAAGAAATGGGGAAGATTCACGTGACCAGTCCTCCCCTGGGCTGGGAGCCTCAGCAGCAGAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS TCA 72 bp CAGACCCATCCATGCTTCTGGCAAGCACCTCTCTTGTaGGCACATCTGGGTACTGAGTCTCTTGGAACATGG +
Preference number: 6 (lower is better)
Translates to: QTHPCFWQAPLL*AHLGTESLGTW
Trigger: CCATGTTCCAAGAGACTCAGTACCCAGATGTGCTCACAAGAGAGGTGCTTGCCAGAAGCATGGATGGGTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS GCA 72 bp TCTCTGCAACTTGGCCTCAGTCACACCCATTCCCCTTaGCAGCTGTTTTCCTTCTTCAGCACGGAGATAGTG +
Preference number: 6 (lower is better)
Translates to: SLQLGLSHTHSP*QLFSFFSTEIV
Trigger: CACTATCTCCGTGCTGAAGAAGGAAAACAGCTGGCAAGGGGAATGGGTGTGACTGAGGCCAAGTTGCAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS GCA 72 bp CTCCTGAACTGCACTCTCCTCTTCTTAAACCATCTCTaGAACTTGGCCTCAGTCACACCCATTCCCCTTGCC +
Preference number: 6 (lower is better)
Translates to: LLNCTLLFLNHL*NLASVTPIPLA
Trigger: GGCAAGGGGAATGGGTGTGACTGAGGCCAAGTTGCAGAGATGGTTTAAGAAGAGGAGAGTGCAGTTCAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS CAA 90 bp CTGGCCCTCTGTTTGGCTCTCCTGTTGTTAAACCTTATCTGCACCTaGGCTTCAGACCCATCCATGCTTCTGGCAAGCACCTCTCTTGTG +
Preference number: 6 (lower is better)
Translates to: LALCLALLLLNLICT*ASDPSMLLASTSLV
Trigger: CACAAGAGAGGTGCTTGCCAGAAGCATGGATGGGTCTGAAGCCAAGGTGCAGATAAGGTTTAACAACAGGAGAGCCAAACAGAGGGCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS CAA 90 bp CCTGCTGTGCTCCTGAGCATTGCTTTCTTCTCCCTGGCCCTCTGTTaGGCTCTCCTGTTGTTAAACCTTATCTGCACCTTGGCTTCAGAC +
Preference number: 6 (lower is better)
Translates to: PAVLLSIAFFSLALC*ALLLLNLICTLASD
Trigger: GTCTGAAGCCAAGGTGCAGATAAGGTTTAACAACAGGAGAGCCAAACAGAGGGCCAGGGAGAAGAAAGCAATGCTCAGGAGCACAGCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS CAA 72 bp ATCTCTGCAACTTGGCCTCAGTCACACCCATTCCCCTaGCCAGCTGTTTTCCTTCTTCAGCACGGAGATAGT +
Preference number: 6 (lower is better)
Translates to: ISATWPQSHPFP*PAVFLLQHGDS
Trigger: ACTATCTCCGTGCTGAAGAAGGAAAACAGCTGGCAAGGGGAATGGGTGTGACTGAGGCCAAGTTGCAGAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2
CDS CAA 72 bp AACTGCACTCTCCTCTTCTTAAACCATCTCTGCAACTaGGCCTCAGTCACACCCATTCCCCTTGCCAGCTGT +
Preference number: 6 (lower is better)
Translates to: NCTLLFLNHLCN*ASVTPIPLASC
Trigger: ACAGCTGGCAAGGGGAATGGGTGTGACTGAGGCCAAGTTGCAGAGATGGTTTAAGAAGAGGAGAGTGCAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115156.2