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Pregenerated sensors for RHOX7A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071767

Ensembl transcript IDs: ENSMUST00000096454.2, ENSMUST00000184891.2

Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTTAAACCATCTCTGCAACTTGGCCTCAGTCACACCCGTTCCCCTTaGCAGCTGTTTTCCTTCTGCTTCTCCTCCTTAGGCGCCACATGG +
Preference number: 1 (lower is better)
Translates to: LKPSLQLGLSHTRSP*QLFSFCFSSLGATW
Trigger: CCATGTGGCGCCTAAGGAGGAGAAGCAGAAGGAAAACAGCTGGCAAGGGGAACGGGTGTGACTGAGGCCAAGTTGCAGAGATGGTTTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000184891.2
3UTR TCA 90 bp CAGAGAGGTGGAGTGGGTCCTGGGTGGGGCATCATCATTCATCCTTaGCTGACTGTGTTCTCTCCTGAACTGCACTCTCCTCTTCTTAAA +
Preference number: 1 (lower is better)
Translates to: QRGGVGPGWGIIIHP*LTVFSPELHSPLLK
Trigger: TTTAAGAAGAGGAGAGTGCAGTTCAGGAGAGAACACAGTCAGTCAAGGATGAATGATGATGCCCCACCCAGGACCCACTCCACCTCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184891.2
3UTR-3UTR GCA 90 bp TACACTAGGGCTCCTGCGCCATCTTCAGAGAGGTGGAGTGGGTCCTGGGTGGGGCAGCTGTTTTCCTTCTaGTTCTCCTCCTTAGGCGCC +
Preference number: 2 (lower is better)
Translates to: YTRAPAPSSERWSGSWVGQLFSF*FSSLGA
Trigger: GGCGCCTAAGGAGGAGAAGCAGAAGGAAAACAGCTG...CCCCACCCAGGACCCACTCCACCTCTCTGAAGATGGCGCAGGAGCCCTAGTGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000184891.2
3UTR-3UTR TCA 90 bp GGTACACTAGGGCTCCTGCGCCATCTTCAGAGAGGTGGAGTGGGTCCTGGGTGGTCATTCATCCTTGACTaGCTGTGTTCTCTCCTGAAC +
Preference number: 2 (lower is better)
Translates to: GTLGLLRHLQRGGVGPGWSFILD*LCSLLN
Trigger: GTTCAGGAGAGAACACAGTCAGTCAAGGATGAATGA...CCACCCAGGACCCACTCCACCTCTCTGAAGATGGCGCAGGAGCCCTAGTGTACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184891.2
3UTR-3UTR GCA 90 bp GGTACACTAGGGCTCCTGCGCCATCTTCAGAGAGGTGGAGTGGGTCCTGGGTGGTGTTCTCTCCTGAACTaGACTCTCCTCTTCTTAAAC +
Preference number: 2 (lower is better)
Translates to: GTLGLLRHLQRGGVGPGWCSLLN*TLLFLN
Trigger: GTTTAAGAAGAGGAGAGTGCAGTTCAGGAGAGAACA...CCACCCAGGACCCACTCCACCTCTCTGAAGATGGCGCAGGAGCCCTAGTGTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184891.2
3UTR CCA 72 bp TGGTACACTAGGGCTCCTGCGCCATCTTCAGAGAGGTaGAGTGGGTCCTGGGTGGGGCATCATCATTCATCC +
Preference number: 3 (lower is better)
Translates to: WYTRAPAPSSER*SGSWVGHHHSS
Trigger: GGATGAATGATGATGCCCCACCCAGGACCCACTCCACCTCTCTGAAGATGGCGCAGGAGCCCTAGTGTACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184891.2
3UTR-3UTR CAA 90 bp TCTTCAGAGAGGTGGAGTGGGTCCTGGGTGGGGCATCATCATTCATCCTTGACTTCACACCCGTTCCCCTaGCCAGCTGTTTTCCTTCTG +
Preference number: 3 (lower is better)
Translates to: SSERWSGSWVGHHHSSLTSHPFP*PAVFLL
Trigger: CAGAAGGAAAACAGCTGGCAAGGGGAACGGGTGTGA...AGTCAAGGATGAATGATGATGCCCCACCCAGGACCCACTCCACCTCTCTGAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000184891.2
3UTR TCA 72 bp GGAGTGGGTCCTGGGTGGGGCATCATCATTCATCCTTaGCTGACTGTGTTCTCTCCTGAACTGCACTCTCCT +
Preference number: 3 (lower is better)
Translates to: GVGPGWGIIIHP*LTVFSPELHSP
Trigger: AGGAGAGTGCAGTTCAGGAGAGAACACAGTCAGTCAAGGATGAATGATGATGCCCCACCCAGGACCCACTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184891.2
3UTR TCA 72 bp TGGGTCCTGGGTGGGGCATCATCATTCATCCTTGACTaGCTGTGTTCTCTCCTGAACTGCACTCTCCTCTTC +
Preference number: 3 (lower is better)
Translates to: WVLGGASSFILD*LCSLLNCTLLF
Trigger: GAAGAGGAGAGTGCAGTTCAGGAGAGAACACAGTCAGTCAAGGATGAATGATGATGCCCCACCCAGGACCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184891.2
3UTR CAA 72 bp AACTGCACTCTCCTCTTCTTAAACCATCTCTGCAACTaGGCCTCAGTCACACCCGTTCCCCTTGCCAGCTGT +
Preference number: 4 (lower is better)
Translates to: NCTLLFLNHLCN*ASVTPVPLASC
Trigger: ACAGCTGGCAAGGGGAACGGGTGTGACTGAGGCCAAGTTGCAGAGATGGTTTAAGAAGAGGAGAGTGCAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184891.2
CDS CCA 90 bp TCGGGATCCCACACGCTGCCTCCGCTGGGCACGAGGCACCAGCACTaGCACAGGGTGCACGTCCTCAGTGCCCCACCTACACTCAGGGAC +
Preference number: 5 (lower is better)
Translates to: SGSHTLPPLGTRHQH*HRVHVLSAPPTLRD
Trigger: GTCCCTGAGTGTAGGTGGGGCACTGAGGACGTGCACCCTGTGCCAGTGCTGGTGCCTCGTGCCCAGCGGAGGCAGCGTGTGGGATCCCGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096454.2
CDS GCA 90 bp CTTAAACCATCTCTGCAACTTGGCCTCAGTCACACCCGTTCCCCTTaGCAGCTGTTTTCCTTCTTCAGCACGGAGATAGTGGTTTCTCTG +
Preference number: 5 (lower is better)
Translates to: LKPSLQLGLSHTRSP*QLFSFFSTEIVVSL
Trigger: CAGAGAAACCACTATCTCCGTGCTGAAGAAGGAAAACAGCTGGCAAGGGGAACGGGTGTGACTGAGGCCAAGTTGCAGAGATGGTTTAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096454.2
CDS CCA 72 bp TGTCCCCGGGATCGGGATCCCACACGCTGCCTCCGCTaGGCACGAGGCACCAGCACTGGCACAGGGTGCACG +
Preference number: 6 (lower is better)
Translates to: CPRDRDPTRCLR*ARGTSTGTGCT
Trigger: CGTGCACCCTGTGCCAGTGCTGGTGCCTCGTGCCCAGCGGAGGCAGCGTGTGGGATCCCGATCCCGGGGACA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096454.2
CDS GCA 72 bp CTCCGCTGGGCACGAGGCACCAGCACTGGCACAGGGTaGACGTCCTCAGTGCCCCACCTACACTCAGGGACC +
Preference number: 6 (lower is better)
Translates to: LRWARGTSTGTG*TSSVPHLHSGT
Trigger: GGTCCCTGAGTGTAGGTGGGGCACTGAGGACGTGCACCCTGTGCCAGTGCTGGTGCCTCGTGCCCAGCGGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096454.2
CDS CCA 72 bp CACACGCTGCCTCCGCTGGGCACGAGGCACCAGCACTaGCACAGGGTGCACGTCCTCAGTGCCCCACCTACA +
Preference number: 6 (lower is better)
Translates to: HTLPPLGTRHQH*HRVHVLSAPPT
Trigger: TGTAGGTGGGGCACTGAGGACGTGCACCCTGTGCCAGTGCTGGTGCCTCGTGCCCAGCGGAGGCAGCGTGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096454.2
CDS GCA 72 bp GAGGCACCAGCACTGGCACAGGGTGCACGTCCTCAGTaGCCCACCTACACTCAGGGACCCGATTCTGAGGCC +
Preference number: 6 (lower is better)
Translates to: EAPALAQGARPQ*PTYTQGPDSEA
Trigger: GGCCTCAGAATCGGGTCCCTGAGTGTAGGTGGGGCACTGAGGACGTGCACCCTGTGCCAGTGCTGGTGCCTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096454.2
CDS CCA 72 bp GTTTCTCTGGAAAACCTGTTCCAGCTCCTGCAGCTGTaGCTCTGTAAATCCGTCCCGGAGGGGGCGGTGGGG +
Preference number: 6 (lower is better)
Translates to: VSLENLFQLLQL*LCKSVPEGAVG
Trigger: CCCCACCGCCCCCTCCGGGACGGATTTACAGAGCCACAGCTGCAGGAGCTGGAACAGGTTTTCCAGAGAAAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096454.2
CDS CCA 72 bp CATTCTGCTGCAGAGGCTCCCAGTCCAGGGGAGGACTaGTCACGTGAATCTTCCCCATTTCTTTCCTCACCA +
Preference number: 6 (lower is better)
Translates to: HSAAEAPSPGED*SRESSPFLSSP
Trigger: TGGTGAGGAAAGAAATGGGGAAGATTCACGTGACCAGTCCTCCCCTGGACTGGGAGCCTCTGCAGCAGAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096454.2
CDS GCA 72 bp TCTCTGCAACTTGGCCTCAGTCACACCCGTTCCCCTTaGCAGCTGTTTTCCTTCTTCAGCACGGAGATAGTG +
Preference number: 6 (lower is better)
Translates to: SLQLGLSHTRSP*QLFSFFSTEIV
Trigger: CACTATCTCCGTGCTGAAGAAGGAAAACAGCTGGCAAGGGGAACGGGTGTGACTGAGGCCAAGTTGCAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096454.2
CDS CAA 72 bp ATCTCTGCAACTTGGCCTCAGTCACACCCGTTCCCCTaGCCAGCTGTTTTCCTTCTTCAGCACGGAGATAGT +
Preference number: 6 (lower is better)
Translates to: ISATWPQSHPFP*PAVFLLQHGDS
Trigger: ACTATCTCCGTGCTGAAGAAGGAAAACAGCTGGCAAGGGGAACGGGTGTGACTGAGGCCAAGTTGCAGAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096454.2
CDS CAA 90 bp CTGGCCCTCTGTTTGGCTCTCCTGTTGTTAAACCTTATCTGCACCTaGGCTTCAGACCCATCCATGCTTCTGGCAAGCACCTCTCTTGTA +
Preference number: 6 (lower is better)
Translates to: LALCLALLLLNLICT*ASDPSMLLASTSLV
Trigger: TACAAGAGAGGTGCTTGCCAGAAGCATGGATGGGTCTGAAGCCAAGGTGCAGATAAGGTTTAACAACAGGAGAGCCAAACAGAGGGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096454.2
CDS GCA 72 bp GCCCTCTGTTTGGCTCTCCTGTTGTTAAACCTTATCTaGACCTTGGCTTCAGACCCATCCATGCTTCTGGCA +
Preference number: 6 (lower is better)
Translates to: ALCLALLLLNLI*TLASDPSMLLA
Trigger: TGCCAGAAGCATGGATGGGTCTGAAGCCAAGGTGCAGATAAGGTTTAACAACAGGAGAGCCAAACAGAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096454.2