RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RHOX6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000006200

Ensembl transcript IDs: ENSMUST00000006362.4

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp AGAATGCTCATCTTTATTGCTGAAATAATTGTAGAGAAGAAAAGGTaGTCATGGCCATCATGGGTGGCTCAGAAGAAGCCATCCTCATCT +
Preference number: 2 (lower is better)
Translates to: RMLIFIAEIIVEKKR*SWPSWVAQKKPSSS
Trigger: AGATGAGGATGGCTTCTTCTGAGCCACCCATGATGGCCATGACAACCTTTTCTTCTCTACAATTATTTCAGCAATAAAGATGAGCATTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
3UTR CCA 72 bp GCCATCATGGGTGGCTCAGAAGAAGCCATCCTCATCTaGCTCCATGACAGGGCTGGCACTCAAGTGCTGCTC +
Preference number: 3 (lower is better)
Translates to: AIMGGSEEAILI*LHDRAGTQVLL
Trigger: GAGCAGCACTTGAGTGCCAGCCCTGTCATGGAGCCAGATGAGGATGGCTTCTTCTGAGCCACCCATGATGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
3UTR TCA 72 bp GGGTGGCTCAGAAGAAGCCATCCTCATCTGGCTCCATaGCAGGGCTGGCACTCAAGTGCTGCTCCAAAATCT +
Preference number: 3 (lower is better)
Translates to: GWLRRSHPHLAP*QGWHSSAAPKS
Trigger: AGATTTTGGAGCAGCACTTGAGTGCCAGCCCTGTCATGGAGCCAGATGAGGATGGCTTCTTCTGAGCCACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
3UTR CCA 72 bp ATAATTGTAGAGAAGAAAAGGTTGTCATGGCCATCATaGGTGGCTCAGAAGAAGCCATCCTCATCTGGCTCC +
Preference number: 3 (lower is better)
Translates to: IIVEKKRLSWPS*VAQKKPSSSGS
Trigger: GGAGCCAGATGAGGATGGCTTCTTCTGAGCCACCCATGATGGCCATGACAACCTTTTCTTCTCTACAATTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
3UTR CCA 72 bp ATTGCTGAAATAATTGTAGAGAAGAAAAGGTTGTCATaGCCATCATGGGTGGCTCAGAAGAAGCCATCCTCA +
Preference number: 3 (lower is better)
Translates to: IAEIIVEKKRLS*PSWVAQKKPSS
Trigger: TGAGGATGGCTTCTTCTGAGCCACCCATGATGGCCATGACAACCTTTTCTTCTCTACAATTATTTCAGCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS-3UTR GCA 90 bp GGTTGTCATGGCCATCATGGGTGGCTCAGAAGAAGCCATCCTCATCTGGCTCCACACACCCATCCATCGTaGAAGATCCCTCCTTGCTCG +
Preference number: 4 (lower is better)
Translates to: GCHGHHGWLRRSHPHLAPHTHPS*KIPPCS
Trigger: CGAGCAAGGAGGGATCTTGCACGATGGATGGGTGTG...TGGAGCCAGATGAGGATGGCTTCTTCTGAGCCACCCATGATGGCCATGACAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS-3UTR CCA 90 bp TTGTCATGGCCATCATGGGTGGCTCAGAAGAAGCCATCCTCATCTGGCTCCATGAGTGGCTTCCTGAGCTaGACTCAATGGAGCAGGCTC +
Preference number: 4 (lower is better)
Translates to: LSWPSWVAQKKPSSSGSMSGFLS*TQWSRL
Trigger: GAGCCTGCTCCATTGAGTCCAGCTCAGGAAGCCACT...CATGGAGCCAGATGAGGATGGCTTCTTCTGAGCCACCCATGATGGCCATGACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS-3UTR TCA 90 bp GTCATGGCCATCATGGGTGGCTCAGAAGAAGCCATCCTCATCTGGCTCCATGACGAACATGTGGGTTTCTaGTGCTATCAGGACTGGCTG +
Preference number: 4 (lower is better)
Translates to: VMAIMGGSEEAILIWLHDEHVGF*CYQDWL
Trigger: CAGCCAGTCCTGATAGCATCAGAAACCCACATGTTC...GTCATGGAGCCAGATGAGGATGGCTTCTTCTGAGCCACCCATGATGGCCATGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS-3UTR CCA 90 bp AAAGGTTGTCATGGCCATCATGGGTGGCTCAGAAGAAGCCATCCTCATCTGGCTCCTCTTCTCCTCCAGTaGCTTCCTGAGCTGGACTCA +
Preference number: 4 (lower is better)
Translates to: KGCHGHHGWLRRSHPHLAPLLLQ*LPELDS
Trigger: TGAGTCCAGCTCAGGAAGCCACTGGAGGAGAAGAGG...AGCCAGATGAGGATGGCTTCTTCTGAGCCACCCATGATGGCCATGACAACCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS-3UTR TCA 90 bp GCTGAAATAATTGTAGAGAAGAAAAGGTTGTCATGGCCATCATGGGTGGCTCAGGGAGCAGGCTCTTCTTaGGCCTGCTCACCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: AEIIVEKKRLSWPSWVAQGAGSS*ACSPPA
Trigger: TGCTGGAGGTGAGCAGGCTCAAGAAGAGCCTGCTCC...CTGAGCCACCCATGATGGCCATGACAACCTTTTCTTCTCTACAATTATTTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS-3UTR TCA 90 bp GAAATAATTGTAGAGAAGAAAAGGTTGTCATGGCCATCATGGGTGGCTCAGAAGCCTCCAGTGGCTTCCTaGGCTGGACTCAATGGAGCA +
Preference number: 4 (lower is better)
Translates to: EIIVEKKRLSWPSWVAQKPPVAS*AGLNGA
Trigger: TGCTCCATTGAGTCCAGCTCAGGAAGCCACTGGAGG...CTTCTGAGCCACCCATGATGGCCATGACAACCTTTTCTTCTCTACAATTATTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS-3UTR GCA 90 bp AGGTTGTCATGGCCATCATGGGTGGCTCAGAAGAAGCCATCCTCATCTGGCTCCATCCGAAACCAATTCTaGACATCACATTCATCCACA +
Preference number: 4 (lower is better)
Translates to: RLSWPSWVAQKKPSSSGSIRNQF*TSHSST
Trigger: TGTGGATGAATGTGATGTGCAGAATTGGTTTCGGAT...GGAGCCAGATGAGGATGGCTTCTTCTGAGCCACCCATGATGGCCATGACAACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS-3UTR CCA 90 bp TTGTCATGGCCATCATGGGTGGCTCAGAAGAAGCCATCCTCATCTGGCTCCATGCCTATTCAGAACATGTaGGTTTCTGATGCTATCAGG +
Preference number: 4 (lower is better)
Translates to: LSWPSWVAQKKPSSSGSMPIQNM*VSDAIR
Trigger: CCTGATAGCATCAGAAACCCACATGTTCTGAATAGG...CATGGAGCCAGATGAGGATGGCTTCTTCTGAGCCACCCATGATGGCCATGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS-3UTR CCA 90 bp GAAGAAAAGGTTGTCATGGCCATCATGGGTGGCTCAGAAGAAGCCATCCTCATCACTCTCCTGTTTCTCTaGAAAAGGGCTCTCCTCATC +
Preference number: 4 (lower is better)
Translates to: EEKVVMAIMGGSEEAILITLLFL*KRALLI
Trigger: GATGAGGAGAGCCCTTTTCCAGAGAAACAGGAGAGT...GATGAGGATGGCTTCTTCTGAGCCACCCATGATGGCCATGACAACCTTTTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS CCA 90 bp CCTGGTGCGTCTGTACCGCAGTTGAGCCAGCCTATTCAGAACATGTaGGTTTCTGATGCTATCAGGACTGGCTGCCTCTTGCTGAGGCGG +
Preference number: 5 (lower is better)
Translates to: PGASVPQLSQPIQNM*VSDAIRTGCLLLRR
Trigger: CCGCCTCAGCAAGAGGCAGCCAGTCCTGATAGCATCAGAAACCCACATGTTCTGAATAGGCTGGCTCAACTGCGGTACAGACGCACCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS-3UTR CAA 90 bp AGAGAAGAAAAGGTTGTCATGGCCATCATGGGTGGCTCAGAAGAAGCCATCCTCAGGACTGGCTGCCTCTaGCTGAGGCGGCTGTTGATC +
Preference number: 5 (lower is better)
Translates to: REEKVVMAIMGGSEEAILRTGCL*LRRLLI
Trigger: GATCAACAGCCGCCTCAGCAAGAGGCAGCCAGTCCT...GAGGATGGCTTCTTCTGAGCCACCCATGATGGCCATGACAACCTTTTCTTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS TCA 90 bp GTCTGTACCGCAGTTGAGCCAGCCTATTCAGAACATGTGGGTTTCTaGTGCTATCAGGACTGGCTGCCTCTTGCTGAGGCGGCTGTTGAT +
Preference number: 5 (lower is better)
Translates to: VCTAVEPAYSEHVGF*CYQDWLPLAEAAVD
Trigger: ATCAACAGCCGCCTCAGCAAGAGGCAGCCAGTCCTGATAGCATCAGAAACCCACATGTTCTGAATAGGCTGGCTCAACTGCGGTACAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS GCA 90 bp CCGAAACCAATTCTGCACATCACATTCATCCACACCCATCCATCGTaGAAGATCCCTCCTTGCTCGCAAGCTGGGGTAGCGAGTCTCTTG +
Preference number: 5 (lower is better)
Translates to: PKPILHITFIHTHPS*KIPPCSQAGVASLL
Trigger: CAAGAGACTCGCTACCCCAGCTTGCGAGCAAGGAGGGATCTTGCACGATGGATGGGTGTGGATGAATGTGATGTGCAGAATTGGTTTCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS GCA 90 bp CAGCCTATTCAGAACATGTGGGTTTCTGATGCTATCAGGACTGGCTaGCTCTTGCTGAGGCGGCTGTTGATCTATGTTTTCGCCGCCTTC +
Preference number: 5 (lower is better)
Translates to: QPIQNMWVSDAIRTG*LLLRRLLIYVFAAF
Trigger: GAAGGCGGCGAAAACATAGATCAACAGCCGCCTCAGCAAGAGGCAGCCAGTCCTGATAGCATCAGAAACCCACATGTTCTGAATAGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS-3UTR CAA 90 bp GCTGAAATAATTGTAGAGAAGAAAAGGTTGTCATGGCCATCATGGGTGGCTCAGCCAGGCTGTTCTTCCTaGTCCTCCTCGGCTGCCGGA +
Preference number: 5 (lower is better)
Translates to: AEIIVEKKRLSWPSWVAQPGCSS*SSSAAG
Trigger: TCCGGCAGCCGAGGAGGACAAGGAAGAACAGCCTGG...CTGAGCCACCCATGATGGCCATGACAACCTTTTCTTCTCTACAATTATTTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS GCA 90 bp CTCCTGTTTCTCTGGAAAAGGGCTCTCCTCATCCGAAACCAATTCTaGACATCACATTCATCCACACCCATCCATCGTGCAAGATCCCTC +
Preference number: 5 (lower is better)
Translates to: LLFLWKRALLIRNQF*TSHSSTPIHRARSL
Trigger: GAGGGATCTTGCACGATGGATGGGTGTGGATGAATGTGATGTGCAGAATTGGTTTCGGATGAGGAGAGCCCTTTTCCAGAGAAACAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS-3UTR CAA 90 bp GCTGAAATAATTGTAGAGAAGAAAAGGTTGTCATGGCCATCATGGGTGGCTCAGAGTACAAGCTCTTTCTaGTCTATTCTTTCCTCTGGA +
Preference number: 5 (lower is better)
Translates to: AEIIVEKKRLSWPSWVAQSTSSF*SILSSG
Trigger: TCCAGAGGAAAGAATAGACAAGAAAGAGCTTGTACT...CTGAGCCACCCATGATGGCCATGACAACCTTTTCTTCTCTACAATTATTTCAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS CAA 72 bp CCGGAGACCACTGCATTCCCACCAGGCTGTTCTTCCTaGTCCTCCTCGGCTGCCGGACTCGGAGGCTTTTGG +
Preference number: 6 (lower is better)
Translates to: PETTAFPPGCSS*SSSAAGLGGFW
Trigger: CCAAAAGCCTCCGAGTCCGGCAGCCGAGGAGGACAAGGAAGAACAGCCTGGTGGGAATGCAGTGGTCTCCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS CAA 90 bp TCTGGAGCCCCGGAGACCACTGCATTCCCACCAGGCTGTTCTTCCTaGTCCTCCTCGGCTGCCGGACTCGGAGGCTTTTGGATGCTTTGG +
Preference number: 6 (lower is better)
Translates to: SGAPETTAFPPGCSS*SSSAAGLGGFWMLW
Trigger: CCAAAGCATCCAAAAGCCTCCGAGTCCGGCAGCCGAGGAGGACAAGGAAGAACAGCCTGGTGGGAATGCAGTGGTCTCCGGGGCTCCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS GCA 72 bp CTTGTCTATTCTTTCCTCTGGAGCCCCGGAGACCACTaGATTCCCACCAGGCTGTTCTTCCTTGTCCTCCTC +
Preference number: 6 (lower is better)
Translates to: LVYSFLWSPGDH*IPTRLFFLVLL
Trigger: GAGGAGGACAAGGAAGAACAGCCTGGTGGGAATGCAGTGGTCTCCGGGGCTCCAGAGGAAAGAATAGACAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS TCA 72 bp GCAGTTGAGCCAGCCTATTCAGAACATGTGGGTTTCTaGTGCTATCAGGACTGGCTGCCTCTTGCTGAGGCG +
Preference number: 6 (lower is better)
Translates to: AVEPAYSEHVGF*CYQDWLPLAEA
Trigger: CGCCTCAGCAAGAGGCAGCCAGTCCTGATAGCATCAGAAACCCACATGTTCTGAATAGGCTGGCTCAACTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS GCA 72 bp ATTCTGCACATCACATTCATCCACACCCATCCATCGTaGAAGATCCCTCCTTGCTCGCAAGCTGGGGTAGCG +
Preference number: 6 (lower is better)
Translates to: ILHITFIHTHPS*KIPPCSQAGVA
Trigger: CGCTACCCCAGCTTGCGAGCAAGGAGGGATCTTGCACGATGGATGGGTGTGGATGAATGTGATGTGCAGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS CAA 72 bp ATGTGGGTTTCTGATGCTATCAGGACTGGCTGCCTCTaGCTGAGGCGGCTGTTGATCTATGTTTTCGCCGCC +
Preference number: 6 (lower is better)
Translates to: MWVSDAIRTGCL*LRRLLIYVFAA
Trigger: GGCGGCGAAAACATAGATCAACAGCCGCCTCAGCAAGAGGCAGCCAGTCCTGATAGCATCAGAAACCCACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS CAA 90 bp GTCATGCAGCTGAGAGTGGGTGAACCTGGTGCGTCTGTACCGCAGTaGAGCCAGCCTATTCAGAACATGTGGGTTTCTGATGCTATCAGG +
Preference number: 6 (lower is better)
Translates to: VMQLRVGEPGASVPQ*SQPIQNMWVSDAIR
Trigger: CCTGATAGCATCAGAAACCCACATGTTCTGAATAGGCTGGCTCAACTGCGGTACAGACGCACCAGGTTCACCCACTCTCAGCTGCATGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS CCA 72 bp GTTCAGTACAAGCTCTTTCTTGTCTATTCTTTCCTCTaGAGCCCCGGAGACCACTGCATTCCCACCAGGCTG +
Preference number: 6 (lower is better)
Translates to: VQYKLFLVYSFL*SPGDHCIPTRL
Trigger: CAGCCTGGTGGGAATGCAGTGGTCTCCGGGGCTCCAGAGGAAAGAATAGACAAGAAAGAGCTTGTACTGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS CAA 72 bp CTGAGAGTGGGTGAACCTGGTGCGTCTGTACCGCAGTaGAGCCAGCCTATTCAGAACATGTGGGTTTCTGAT +
Preference number: 6 (lower is better)
Translates to: LRVGEPGASVPQ*SQPIQNMWVSD
Trigger: ATCAGAAACCCACATGTTCTGAATAGGCTGGCTCAACTGCGGTACAGACGCACCAGGTTCACCCACTCTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS CCA 72 bp TCTGTACCGCAGTTGAGCCAGCCTATTCAGAACATGTaGGTTTCTGATGCTATCAGGACTGGCTGCCTCTTG +
Preference number: 6 (lower is better)
Translates to: SVPQLSQPIQNM*VSDAIRTGCLL
Trigger: CAAGAGGCAGCCAGTCCTGATAGCATCAGAAACCCACATGTTCTGAATAGGCTGGCTCAACTGCGGTACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4
CDS GCA 72 bp CTCTGGAAAAGGGCTCTCCTCATCCGAAACCAATTCTaGACATCACATTCATCCACACCCATCCATCGTGCA +
Preference number: 6 (lower is better)
Translates to: LWKRALLIRNQF*TSHSSTPIHRA
Trigger: TGCACGATGGATGGGTGTGGATGAATGTGATGTGCAGAATTGGTTTCGGATGAGGAGAGCCCTTTTCCAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006362.4