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Pregenerated sensors for RHOX4G (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079628

Ensembl transcript IDs: ENSMUST00000115166.3

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TATTTCACATACAAATGCTTAGGGGATAGAGATGCAATAACATGCTaGTGGAAGGCAGCAGGGGTCTGCACGTGGCTCCTGGTCAAGGGT +
Preference number: 1 (lower is better)
Translates to: YFTYKCLGDRDAITC*WKAAGVCTWLLVKG
Trigger: ACCCTTGACCAGGAGCCACGTGCAGACCCCTGCTGCCTTCCACCAGCATGTTATTGCATCTCTATCCCCTAAGCATTTGTATGTGAAATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115166.3
3UTR GCA 90 bp ATTTATTTCACATACAAATGCTTAGGGGATAGAGATGCAATAACATaGTGGTGGAAGGCAGCAGGGGTCTGCACGTGGCTCCTGGTCAAG +
Preference number: 1 (lower is better)
Translates to: IYFTYKCLGDRDAIT*WWKAAGVCTWLLVK
Trigger: CTTGACCAGGAGCCACGTGCAGACCCCTGCTGCCTTCCACCAGCATGTTATTGCATCTCTATCCCCTAAGCATTTGTATGTGAAATAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115166.3
3UTR CCA 72 bp AAATGCTTAGGGGATAGAGATGCAATAACATGCTGGTaGAAGGCAGCAGGGGTCTGCACGTGGCTCCTGGTC +
Preference number: 3 (lower is better)
Translates to: KCLGDRDAITCW*KAAGVCTWLLV
Trigger: GACCAGGAGCCACGTGCAGACCCCTGCTGCCTTCCACCAGCATGTTATTGCATCTCTATCCCCTAAGCATTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115166.3
3UTR CCA 72 bp TACAAATGCTTAGGGGATAGAGATGCAATAACATGCTaGTGGAAGGCAGCAGGGGTCTGCACGTGGCTCCTG +
Preference number: 3 (lower is better)
Translates to: YKCLGDRDAITC*WKAAGVCTWLL
Trigger: CAGGAGCCACGTGCAGACCCCTGCTGCCTTCCACCAGCATGTTATTGCATCTCTATCCCCTAAGCATTTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115166.3
CDS-3UTR TCA 90 bp GGGTCTGCACGTGGCTCCTGGTCAAGGGTGGTACACCAGGCCTCCTGTGCCATCCTGCTGTACCCACACTaGCTTAGGCCGCACACCAGA +
Preference number: 4 (lower is better)
Translates to: GSARGSWSRVVHQASCAILLYPH*LRPHTR
Trigger: TCTGGTGTGCGGCCTAAGTCAGTGTGGGTACAGCAG...GATGGCACAGGAGGCCTGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115166.3
CDS-3UTR TCA 90 bp TGCTGGTGGAAGGCAGCAGGGGTCTGCACGTGGCTCCTGGTCAAGGGTGGTACATCTGCACGGATGAAGTaGTTCTGCTGGAAAATGCGC +
Preference number: 4 (lower is better)
Translates to: CWWKAAGVCTWLLVKGGTSARMK*FCWKMR
Trigger: GCGCATTTTCCAGCAGAATCACTTCATCCGTGCAGA...TGTACCACCCTTGACCAGGAGCCACGTGCAGACCCCTGCTGCCTTCCACCAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115166.3
CDS-3UTR TCA 90 bp TGGTGGAAGGCAGCAGGGGTCTGCACGTGGCTCCTGGTCAAGGGTGGTACACCATTTCCTCTGCACGGATaGAGTGATTCTGCTGGAAAA +
Preference number: 4 (lower is better)
Translates to: WWKAAGVCTWLLVKGGTPFPLHG*SDSAGK
Trigger: TTTTCCAGCAGAATCACTTCATCCGTGCAGAGGAAA...TGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACCCCTGCTGCCTTCCACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115166.3
CDS-3UTR TCA 90 bp GGGTCTGCACGTGGCTCCTGGTCAAGGGTGGTACACCAGGCCTCCTGTGCCATCTCATTCATTCCTAACTaGCTTTGTCCTCTTCTGAAG +
Preference number: 4 (lower is better)
Translates to: GSARGSWSRVVHQASCAISFIPN*LCPLLK
Trigger: CTTCAGAAGAGGACAAAGTCAGTTAGGAATGAATGA...GATGGCACAGGAGGCCTGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115166.3
CDS CCA 90 bp CTTAATTCTTCTGCTTTGTCCCCTTCCACTGCTGCGGCTCCGGACTaGCCCAGTCCACTCTCTCCCTCATTTCTTCCCTCTCCATCCAGT +
Preference number: 5 (lower is better)
Translates to: LNSSALSPSTAAAPD*PSPLSPSFLPSPSS
Trigger: ACTGGATGGAGAGGGAAGAAATGAGGGAGAGAGTGGACTGGGCCAGTCCGGAGCCGCAGCAGTGGAAGGGGACAAAGCAGAAGAATTAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115166.3
CDS CAA 90 bp GCATCACCAGCAGCAGGCCCACCTTCTCCACTTAATTCTTCTGCTTaGTCCCCTTCCACTGCTGCGGCTCCGGACTGGCCCAGTCCACTC +
Preference number: 6 (lower is better)
Translates to: ASPAAGPPSPLNSSA*SPSTAAAPDWPSPL
Trigger: GAGTGGACTGGGCCAGTCCGGAGCCGCAGCAGTGGAAGGGGACAAAGCAGAAGAATTAAGTGGAGAAGGTGGGCCTGCTGCTGGTGATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115166.3
CDS CCA 72 bp TCTGCTTTGTCCCCTTCCACTGCTGCGGCTCCGGACTaGCCCAGTCCACTCTCTCCCTCATTTCTTCCCTCT +
Preference number: 6 (lower is better)
Translates to: SALSPSTAAAPD*PSPLSPSFLPS
Trigger: AGAGGGAAGAAATGAGGGAGAGAGTGGACTGGGCCAGTCCGGAGCCGCAGCAGTGGAAGGGGACAAAGCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115166.3
CDS CAA 90 bp TTCTCCTCCTCCTGGGCACTGCCACTGGTGTCCTGGTCCTCTTGGTaGCTGTTATCCATGAGGTCTGCATCACCAGCAGCAGGCCCACCT +
Preference number: 6 (lower is better)
Translates to: FSSSWALPLVSWSSW*LLSMRSASPAAGPP
Trigger: AGGTGGGCCTGCTGCTGGTGATGCAGACCTCATGGATAACAGCAACCAAGAGGACCAGGACACCAGTGGCAGTGCCCAGGAGGAGGAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115166.3
CDS CAA 90 bp GACTTAGGCCGCACACCAGATACCAGCACTGGAATAGGCTGCACTTaGTCTATGACCACAGCATCCCTGAGAACTGGCTCCTCTGGCAGC +
Preference number: 6 (lower is better)
Translates to: DLGRTPDTSTGIGCT*SMTTASLRTGSSGS
Trigger: GCTGCCAGAGGAGCCAGTTCTCAGGGATGCTGTGGTCATAGACAAAGTGCAGCCTATTCCAGTGCTGGTATCTGGTGTGCGGCCTAAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115166.3
CDS CAA 72 bp CGCACACCAGATACCAGCACTGGAATAGGCTGCACTTaGTCTATGACCACAGCATCCCTGAGAACTGGCTCC +
Preference number: 6 (lower is better)
Translates to: RTPDTSTGIGCT*SMTTASLRTGS
Trigger: GGAGCCAGTTCTCAGGGATGCTGTGGTCATAGACAAAGTGCAGCCTATTCCAGTGCTGGTATCTGGTGTGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115166.3