Pregenerated sensors for RHOX4F (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079630

Ensembl transcript IDs: ENSMUST00000115170.3

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CTTAATTCTTCTGCTTTGTCCCCTTCCACTGCTGTGGCTCCGGACTaGCCCAGTCCACTCTCTCCCTCATTTCTTCCCTCTCCATCCAGT	+
Preference number: 5 (lower is better) Translates to: LNSSALSPSTAVAPD*PSPLSPSFLPSPSS Trigger: ACTGGATGGAGAGGGAAGAAATGAGGGAGAGAGTGGACTGGGCCAGTCCGGAGCCACAGCAGTGGAAGGGGACAAAGCAGAAGAATTAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115170.3
CDS CCA 90 bp	CACCTTCTCCACTTAATTCTTCTGCTTTGTCCCCTTCCACTGCTGTaGCTCCGGACTGGCCCAGTCCACTCTCTCCCTCATTTCTTCCCT	+
Preference number: 5 (lower is better) Translates to: HLLHLILLLCPLPLL*LRTGPVHSLPHFFP Trigger: AGGGAAGAAATGAGGGAGAGAGTGGACTGGGCCAGTCCGGAGCCACAGCAGTGGAAGGGGACAAAGCAGAAGAATTAAGTGGAGAAGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115170.3
CDS CAA 72 bp	GCAGCAGGCCCACCTTCTCCACTTAATTCTTCTGCTTaGTCCCCTTCCACTGCTGTGGCTCCGGACTGGCCC	+
Preference number: 6 (lower is better) Translates to: AAGPPSPLNSSA*SPSTAVAPDWP Trigger: GGGCCAGTCCGGAGCCACAGCAGTGGAAGGGGACAAAGCAGAAGAATTAAGTGGAGAAGGTGGGCCTGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115170.3
CDS CAA 90 bp	ACCAGCACTGGAATAGGCTGCACTTTGTCTATGACCACAGCATCCTaGAGAACTGGCTCCTCTGGCAGCTTCTCCTCCTCCTGGGCACTG	+
Preference number: 6 (lower is better) Translates to: TSTGIGCTLSMTTAS*RTGSSGSFSSSWAL Trigger: CAGTGCCCAGGAGGAGGAGAAGCTGCCAGAGGAGCCAGTTCTCAAGGATGCTGTGGTCATAGACAAAGTGCAGCCTATTCCAGTGCTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115170.3
CDS CCA 72 bp	CACTTAATTCTTCTGCTTTGTCCCCTTCCACTGCTGTaGCTCCGGACTGGCCCAGTCCACTCTCTCCCTCAT	+
Preference number: 6 (lower is better) Translates to: HLILLLCPLPLL*LRTGPVHSLPH Trigger: ATGAGGGAGAGAGTGGACTGGGCCAGTCCGGAGCCACAGCAGTGGAAGGGGACAAAGCAGAAGAATTAAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115170.3
CDS GCA 72 bp	CACACCTATCCATCTTGCCAGATGTCTTCTTTCCTCTaGACGGATGAAGTGATTCTGCTGGAAAATGCGCTC	+
Preference number: 6 (lower is better) Translates to: HTYPSCQMSSFL*TDEVILLENAL Trigger: GAGCGCATTTTCCAGCAGAATCACTTCATCCGTGCAGAGGAAAGAAGACATCTGGCAAGATGGATAGGTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115170.3
CDS TCA 72 bp	TCTGTGTCTTCCTACCATTCAACTTTTCCTTGTCCTTaGCAAGTCCCTCATGAAGTAGGTAGTTGGTGTTTT	+
Preference number: 6 (lower is better) Translates to: SVSSYHSTFPCP*QVPHEVGSWCF Trigger: AAAACACCAACTACCTACTTCATGAGGGACTTGTCAAGGACAAGGAAAAGTTGAATGGTAGGAAGACACAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115170.3

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