Pregenerated sensors for RHOX4E (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071770

Ensembl transcript IDs: ENSMUST00000089075.6

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GGTTTCACTCACACCTATCCATCTTGCCAGATGTCTTCTTTCCTCTaGACGGATGAAGTGATTCTGCTGGAAAATGCGCTCCAGCTCCTG	+
Preference number: 5 (lower is better) Translates to: GFTHTYPSCQMSSFL*TDEVILLENALQLL Trigger: CAGGAGCTGGAGCGCATTTTCCAGCAGAATCACTTCATCCGTGCAGAGGAAAGAAGACATCTGGCAAGATGGATAGGTGTGAGTGAAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089075.6
CDS TCA 90 bp	AAGGTAGAGTGGGACCCCACAGGGGCATCATCATTCATTCCTAACTaGCTTTGTCCTCTTCTGAAGTGCTCTCTCCTCTTCTTAAACCAT	+
Preference number: 5 (lower is better) Translates to: KVEWDPTGASSFIPN*LCPLLKCSLLFLNH Trigger: ATGGTTTAAGAAGAGGAGAGAGCACTTCAGAAGAGGACAAAGTCAGTTAGGAATGAATGATGATGCCCCTGTGGGGTCCCACTCTACCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089075.6
CDS GCA 90 bp	CTTAAACCATCTCTTAACTCTGGTTTCACTCACACCTATCCATCTTaGCAGATGTCTTCTTTCCTCTGCACGGATGAAGTGATTCTGCTG	+
Preference number: 5 (lower is better) Translates to: LKPSLNSGFTHTYPS*QMSSFLCTDEVILL Trigger: CAGCAGAATCACTTCATCCGTGCAGAGGAAAGAAGACATCTGGCAAGATGGATAGGTGTGAGTGAAACCAGAGTTAAGAGATGGTTTAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089075.6

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