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Pregenerated sensors for RHOX4D (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079633

Ensembl transcript IDs: ENSMUST00000115175.4

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TATTTCACATACAAATGCTTAGGGAATAGAGATGCAATAACATGCTaGTGGAAGGCCGCAGGTGTCTGCATGTGGCTCCTGGTCAAGGGT +
Preference number: 1 (lower is better)
Translates to: YFTYKCLGNRDAITC*WKAAGVCMWLLVKG
Trigger: ACCCTTGACCAGGAGCCACATGCAGACACCTGCGGCCTTCCACCAGCATGTTATTGCATCTCTATTCCCTAAGCATTTGTATGTGAAATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115175.4
3UTR GCA 90 bp ATTTATTTCACATACAAATGCTTAGGGAATAGAGATGCAATAACATaGTGGTGGAAGGCCGCAGGTGTCTGCATGTGGCTCCTGGTCAAG +
Preference number: 1 (lower is better)
Translates to: IYFTYKCLGNRDAIT*WWKAAGVCMWLLVK
Trigger: CTTGACCAGGAGCCACATGCAGACACCTGCGGCCTTCCACCAGCATGTTATTGCATCTCTATTCCCTAAGCATTTGTATGTGAAATAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115175.4
3UTR CCA 72 bp GCTGGTGGAAGGCCGCAGGTGTCTGCATGTGGCTCCTaGTCAAGGGTGGTACACCAGGCCTCCTGTGCCATC +
Preference number: 3 (lower is better)
Translates to: AGGRPQVSACGS*SRVVHQASCAI
Trigger: GATGGCACAGGAGGCCTGGTGTACCACCCTTGACCAGGAGCCACATGCAGACACCTGCGGCCTTCCACCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115175.4
3UTR CCA 72 bp ATAACATGCTGGTGGAAGGCCGCAGGTGTCTGCATGTaGCTCCTGGTCAAGGGTGGTACACCAGGCCTCCTG +
Preference number: 3 (lower is better)
Translates to: ITCWWKAAGVCM*LLVKGGTPGLL
Trigger: CAGGAGGCCTGGTGTACCACCCTTGACCAGGAGCCACATGCAGACACCTGCGGCCTTCCACCAGCATGTTAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115175.4
3UTR GCA 72 bp GATGCAATAACATGCTGGTGGAAGGCCGCAGGTGTCTaGATGTGGCTCCTGGTCAAGGGTGGTACACCAGGC +
Preference number: 3 (lower is better)
Translates to: DAITCWWKAAGV*MWLLVKGGTPG
Trigger: GCCTGGTGTACCACCCTTGACCAGGAGCCACATGCAGACACCTGCGGCCTTCCACCAGCATGTTATTGCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115175.4
3UTR CCA 72 bp TACAAATGCTTAGGGAATAGAGATGCAATAACATGCTaGTGGAAGGCCGCAGGTGTCTGCATGTGGCTCCTG +
Preference number: 3 (lower is better)
Translates to: YKCLGNRDAITC*WKAAGVCMWLL
Trigger: CAGGAGCCACATGCAGACACCTGCGGCCTTCCACCAGCATGTTATTGCATCTCTATTCCCTAAGCATTTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115175.4
3UTR GCA 72 bp ACATACAAATGCTTAGGGAATAGAGATGCAATAACATaGTGGTGGAAGGCCGCAGGTGTCTGCATGTGGCTC +
Preference number: 3 (lower is better)
Translates to: TYKCLGNRDAIT*WWKAAGVCMWL
Trigger: GAGCCACATGCAGACACCTGCGGCCTTCCACCAGCATGTTATTGCATCTCTATTCCCTAAGCATTTGTATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115175.4
CDS-3UTR GCA 90 bp AGGTGTCTGCATGTGGCTCCTGGTCAAGGGTGGTACACCAGGCCTCCTGTGCCAGTCCCATTCCACTGCTaGGGCTCCGGACTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: RCLHVAPGQGWYTRPPVPVPFHC*GSGLAQ
Trigger: CTGGGCCAGTCCGGAGCCGCAGCAGTGGAATGGGAC...TGGCACAGGAGGCCTGGTGTACCACCCTTGACCAGGAGCCACATGCAGACACCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115175.4
CDS GCA 90 bp CTTAAACCATCTCATAACTCTGGCTTCACTCACACCTATCCATCTTaGCAGATGTCTTCTTTCCTCTGCACGGATGAAGTGATTCTGCTG +
Preference number: 5 (lower is better)
Translates to: LKPSHNSGFTHTYPS*QMSSFLCTDEVILL
Trigger: CAGCAGAATCACTTCATCCGTGCAGAGGAAAGAAGACATCTGGCAAGATGGATAGGTGTGAGTGAAGCCAGAGTTATGAGATGGTTTAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115175.4
CDS GCA 90 bp GTAAGACTGTCTGTGTCTTCCCACCATTCAAATTTTCCTTGTCCTTaGCAAGTCCCTCATGAAGTAGGTAGTTGGTGTTTTGATGCTCCA +
Preference number: 5 (lower is better)
Translates to: VRLSVSSHHSNFPCP*QVPHEVGSWCFDAP
Trigger: TGGAGCATCAAAACACCAACTACCTACTTCATGAGGGACTTGGCAAGGACAAGGAAAATTTGAATGGTGGGAAGACACAGACAGTCTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115175.4
CDS CCA 72 bp TCTGCTTTGTCCCATTCCACTGCTGCGGCTCCGGACTaGCCCAGTACACTCTCTCCCTCATTTCTTCCCTCT +
Preference number: 6 (lower is better)
Translates to: SALSHSTAAAPD*PSTLSPSFLPS
Trigger: AGAGGGAAGAAATGAGGGAGAGAGTGTACTGGGCCAGTCCGGAGCCGCAGCAGTGGAATGGGACAAAGCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115175.4
CDS CCA 72 bp TCCTCCTGGGCACTGCCACTGGTGTCCTGGTCCTCTTaGTTGCTGTTATCCATGAGGTCTGCATCACCAGCA +
Preference number: 6 (lower is better)
Translates to: SSWALPLVSWSS*LLLSMRSASPA
Trigger: TGCTGGTGATGCAGACCTCATGGATAACAGCAACCAAGAGGACCAGGACACCAGTGGCAGTGCCCAGGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115175.4
CDS CCA 72 bp AGCTTCTCCTCCTCCTGGGCACTGCCACTGGTGTCCTaGTCCTCTTGGTTGCTGTTATCCATGAGGTCTGCA +
Preference number: 6 (lower is better)
Translates to: SFSSSWALPLVS*SSWLLLSMRSA
Trigger: TGCAGACCTCATGGATAACAGCAACCAAGAGGACCAGGACACCAGTGGCAGTGCCCAGGAGGAGGAGAAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115175.4
CDS GCA 72 bp TCTGTGTCTTCCCACCATTCAAATTTTCCTTGTCCTTaGCAAGTCCCTCATGAAGTAGGTAGTTGGTGTTTT +
Preference number: 6 (lower is better)
Translates to: SVSSHHSNFPCP*QVPHEVGSWCF
Trigger: AAAACACCAACTACCTACTTCATGAGGGACTTGGCAAGGACAAGGAAAATTTGAATGGTGGGAAGACACAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115175.4