Pregenerated sensors for RHOX4C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079635Ensembl transcript IDs: ENSMUST00000115183.2
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 72 bp | GCTGGTGGAAGACAGCAGGTGTCTGCACGTGGCTCCTaGTCAAGGGTGGTACACCAGGCCTCCTGTGCCATC | + |
Preference number: 3 (lower is better) Translates to: AGGRQQVSARGS*SRVVHQASCAI Trigger: GATGGCACAGGAGGCCTGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTGTCTTCCACCAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115183.2 |
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3UTR CCA 72 bp | ATAACATGCTGGTGGAAGACAGCAGGTGTCTGCACGTaGCTCCTGGTCAAGGGTGGTACACCAGGCCTCCTG | + |
Preference number: 3 (lower is better) Translates to: ITCWWKTAGVCT*LLVKGGTPGLL Trigger: CAGGAGGCCTGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTGTCTTCCACCAGCATGTTAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115183.2 |
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3UTR GCA 72 bp | GTTGCAATAACATGCTGGTGGAAGACAGCAGGTGTCTaGACGTGGCTCCTGGTCAAGGGTGGTACACCAGGC | + |
Preference number: 3 (lower is better) Translates to: VAITCWWKTAGV*TWLLVKGGTPG Trigger: GCCTGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTGTCTTCCACCAGCATGTTATTGCAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115183.2 |
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3UTR GCA 72 bp | ACATACAAATGCTTAGGGAATAGAGTTGCAATAACATaGTGGTGGAAGACAGCAGGTGTCTGCACGTGGCTC | + |
Preference number: 3 (lower is better) Translates to: TYKCLGNRVAIT*WWKTAGVCTWL Trigger: GAGCCACGTGCAGACACCTGCTGTCTTCCACCAGCATGTTATTGCAACTCTATTCCCTAAGCATTTGTATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115183.2 |
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CDS-3UTR GCA 90 bp | ACATGCTGGTGGAAGACAGCAGGTGTCTGCACGTGGCTCCTGGTCAAGGGTGGTGTCCCCTTCCACTGCTaGGGCTCCGGACTGGCCCAG | + |
Preference number: 4 (lower is better) Translates to: TCWWKTAGVCTWLLVKGGVPFHC*GSGLAQ Trigger: CTGGGCCAGTCCGGAGCCGCAGCAGTGGAAGGGGAC...ACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTGTCTTCCACCAGCATGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115183.2 |
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CDS-3UTR GCA 90 bp | CAGCAGGTGTCTGCACGTGGCTCCTGGTCAAGGGTGGTACACCAGGCCTCCTGTGTTATCCATGAGGTCTaGATCACCAGCAGCAGGCCC | + |
Preference number: 4 (lower is better) Translates to: QQVSARGSWSRVVHQASCVIHEV*ITSSRP Trigger: GGGCCTGCTGCTGGTGATGCAGACCTCATGGATAAC...ACAGGAGGCCTGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115183.2 |
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CDS-3UTR GCA 90 bp | ACAGCAGGTGTCTGCACGTGGCTCCTGGTCAAGGGTGGTACACCAGGCCTCCTGATGCGCTCCAGCTCCTaGAGCTGCCACCATTGGAAA | + |
Preference number: 4 (lower is better) Translates to: TAGVCTWLLVKGGTPGLLMRSSS*SCHHWK Trigger: TTTCCAATGGTGGCAGCTGCAGGAGCTGGAGCGCAT...CAGGAGGCCTGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115183.2 |
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CDS-3UTR CCA 90 bp | CAGCAGGTGTCTGCACGTGGCTCCTGGTCAAGGGTGGTACACCAGGCCTCCTGTAGCATCCTTGAGAACTaGCTCCTCTGGCAGCTTCTC | + |
Preference number: 4 (lower is better) Translates to: QQVSARGSWSRVVHQASCSILEN*LLWQLL Trigger: GAGAAGCTGCCAGAGGAGCCAGTTCTCAAGGATGCT...ACAGGAGGCCTGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115183.2 |
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CDS-3UTR GCA 90 bp | ACATGCTGGTGGAAGACAGCAGGTGTCTGCACGTGGCTCCTGGTCAAGGGTGGTCACACCTATCCATCTTaGCAGATGTCTTCTTTCCTC | + |
Preference number: 4 (lower is better) Translates to: TCWWKTAGVCTWLLVKGGHTYPS*QMSSFL Trigger: GAGGAAAGAAGACATCTGGCAAGATGGATAGGTGTG...ACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTGTCTTCCACCAGCATGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115183.2 |
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CDS-3UTR GCA 90 bp | AAGACAGCAGGTGTCTGCACGTGGCTCCTGGTCAAGGGTGGTACACCAGGCCTCTGTCCTCTTCTGAAGTaGTCTCTCCTCTTCTTAAAC | + |
Preference number: 4 (lower is better) Translates to: KTAGVCTWLLVKGGTPGLCPLLK*SLLFLN Trigger: GTTTAAGAAGAGGAGAGAGCACTTCAGAAGAGGACA...GAGGCCTGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTGTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115183.2 |
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CDS-3UTR GCA 90 bp | ATGCTGGTGGAAGACAGCAGGTGTCTGCACGTGGCTCCTGGTCAAGGGTGGTACACTTTTCCTTGTCCTTaGCAAGTCCCTCATGAAGTA | + |
Preference number: 4 (lower is better) Translates to: MLVEDSRCLHVAPGQGWYTFPCP*QVPHEV Trigger: TACTTCATGAGGGACTTGGCAAGGACAAGGAAAAGT...GTACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTGTCTTCCACCAGCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115183.2 |
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CDS-3UTR GCA 90 bp | AATAACATGCTGGTGGAAGACAGCAGGTGTCTGCACGTGGCTCCTGGTCAAGGGATGTCTTCTTTCCTCTaGACGGATGAAGTGATTCTG | + |
Preference number: 4 (lower is better) Translates to: NNMLVEDSRCLHVAPGQGMSSFL*TDEVIL Trigger: CAGAATCACTTCATCCGTGCAGAGGAAAGAAGACAT...CCCTTGACCAGGAGCCACGTGCAGACACCTGCTGTCTTCCACCAGCATGTTATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115183.2 |
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CDS TCA 90 bp | AAGGTAGAGTGGGACCCCACAGGGGCATCGTCATTCATTCCTAACTaGCTTTGTCCTCTTCTGAAGTGCTCTCTCCTCTTCTTAAACCAT | + |
Preference number: 5 (lower is better) Translates to: KVEWDPTGASSFIPN*LCPLLKCSLLFLNH Trigger: ATGGTTTAAGAAGAGGAGAGAGCACTTCAGAAGAGGACAAAGTCAGTTAGGAATGAATGACGATGCCCCTGTGGGGTCCCACTCTACCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115183.2 |
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CDS GCA 90 bp | GTAAGACTGCCTGTGTCTTCCCACCATTCAACTTTTCCTTGTCCTTaGCAAGTCCCTCATGAAGTAGGTAGTTGGTGTTTTGATGCTCCA | + |
Preference number: 5 (lower is better) Translates to: VRLPVSSHHSTFPCP*QVPHEVGSWCFDAP Trigger: TGGAGCATCAAAACACCAACTACCTACTTCATGAGGGACTTGGCAAGGACAAGGAAAAGTTGAATGGTGGGAAGACACAGGCAGTCTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115183.2 |
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CDS TCA 72 bp | TGGGACCCCACAGGGGCATCGTCATTCATTCCTAACTaGCTTTGTCCTCTTCTGAAGTGCTCTCTCCTCTTC | + |
Preference number: 6 (lower is better) Translates to: WDPTGASSFIPN*LCPLLKCSLLF Trigger: GAAGAGGAGAGAGCACTTCAGAAGAGGACAAAGTCAGTTAGGAATGAATGACGATGCCCCTGTGGGGTCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115183.2 |