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Pregenerated sensors for RHOX4C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079635

Ensembl transcript IDs: ENSMUST00000115183.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 72 bp GCTGGTGGAAGACAGCAGGTGTCTGCACGTGGCTCCTaGTCAAGGGTGGTACACCAGGCCTCCTGTGCCATC +
Preference number: 3 (lower is better)
Translates to: AGGRQQVSARGS*SRVVHQASCAI
Trigger: GATGGCACAGGAGGCCTGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTGTCTTCCACCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115183.2
3UTR CCA 72 bp ATAACATGCTGGTGGAAGACAGCAGGTGTCTGCACGTaGCTCCTGGTCAAGGGTGGTACACCAGGCCTCCTG +
Preference number: 3 (lower is better)
Translates to: ITCWWKTAGVCT*LLVKGGTPGLL
Trigger: CAGGAGGCCTGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTGTCTTCCACCAGCATGTTAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115183.2
3UTR GCA 72 bp GTTGCAATAACATGCTGGTGGAAGACAGCAGGTGTCTaGACGTGGCTCCTGGTCAAGGGTGGTACACCAGGC +
Preference number: 3 (lower is better)
Translates to: VAITCWWKTAGV*TWLLVKGGTPG
Trigger: GCCTGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTGTCTTCCACCAGCATGTTATTGCAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115183.2
3UTR GCA 72 bp ACATACAAATGCTTAGGGAATAGAGTTGCAATAACATaGTGGTGGAAGACAGCAGGTGTCTGCACGTGGCTC +
Preference number: 3 (lower is better)
Translates to: TYKCLGNRVAIT*WWKTAGVCTWL
Trigger: GAGCCACGTGCAGACACCTGCTGTCTTCCACCAGCATGTTATTGCAACTCTATTCCCTAAGCATTTGTATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115183.2
CDS-3UTR GCA 90 bp ACATGCTGGTGGAAGACAGCAGGTGTCTGCACGTGGCTCCTGGTCAAGGGTGGTGTCCCCTTCCACTGCTaGGGCTCCGGACTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: TCWWKTAGVCTWLLVKGGVPFHC*GSGLAQ
Trigger: CTGGGCCAGTCCGGAGCCGCAGCAGTGGAAGGGGAC...ACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTGTCTTCCACCAGCATGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115183.2
CDS-3UTR GCA 90 bp CAGCAGGTGTCTGCACGTGGCTCCTGGTCAAGGGTGGTACACCAGGCCTCCTGTGTTATCCATGAGGTCTaGATCACCAGCAGCAGGCCC +
Preference number: 4 (lower is better)
Translates to: QQVSARGSWSRVVHQASCVIHEV*ITSSRP
Trigger: GGGCCTGCTGCTGGTGATGCAGACCTCATGGATAAC...ACAGGAGGCCTGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115183.2
CDS-3UTR GCA 90 bp ACAGCAGGTGTCTGCACGTGGCTCCTGGTCAAGGGTGGTACACCAGGCCTCCTGATGCGCTCCAGCTCCTaGAGCTGCCACCATTGGAAA +
Preference number: 4 (lower is better)
Translates to: TAGVCTWLLVKGGTPGLLMRSSS*SCHHWK
Trigger: TTTCCAATGGTGGCAGCTGCAGGAGCTGGAGCGCAT...CAGGAGGCCTGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115183.2
CDS-3UTR CCA 90 bp CAGCAGGTGTCTGCACGTGGCTCCTGGTCAAGGGTGGTACACCAGGCCTCCTGTAGCATCCTTGAGAACTaGCTCCTCTGGCAGCTTCTC +
Preference number: 4 (lower is better)
Translates to: QQVSARGSWSRVVHQASCSILEN*LLWQLL
Trigger: GAGAAGCTGCCAGAGGAGCCAGTTCTCAAGGATGCT...ACAGGAGGCCTGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115183.2
CDS-3UTR GCA 90 bp ACATGCTGGTGGAAGACAGCAGGTGTCTGCACGTGGCTCCTGGTCAAGGGTGGTCACACCTATCCATCTTaGCAGATGTCTTCTTTCCTC +
Preference number: 4 (lower is better)
Translates to: TCWWKTAGVCTWLLVKGGHTYPS*QMSSFL
Trigger: GAGGAAAGAAGACATCTGGCAAGATGGATAGGTGTG...ACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTGTCTTCCACCAGCATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115183.2
CDS-3UTR GCA 90 bp AAGACAGCAGGTGTCTGCACGTGGCTCCTGGTCAAGGGTGGTACACCAGGCCTCTGTCCTCTTCTGAAGTaGTCTCTCCTCTTCTTAAAC +
Preference number: 4 (lower is better)
Translates to: KTAGVCTWLLVKGGTPGLCPLLK*SLLFLN
Trigger: GTTTAAGAAGAGGAGAGAGCACTTCAGAAGAGGACA...GAGGCCTGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTGTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115183.2
CDS-3UTR GCA 90 bp ATGCTGGTGGAAGACAGCAGGTGTCTGCACGTGGCTCCTGGTCAAGGGTGGTACACTTTTCCTTGTCCTTaGCAAGTCCCTCATGAAGTA +
Preference number: 4 (lower is better)
Translates to: MLVEDSRCLHVAPGQGWYTFPCP*QVPHEV
Trigger: TACTTCATGAGGGACTTGGCAAGGACAAGGAAAAGT...GTACCACCCTTGACCAGGAGCCACGTGCAGACACCTGCTGTCTTCCACCAGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115183.2
CDS-3UTR GCA 90 bp AATAACATGCTGGTGGAAGACAGCAGGTGTCTGCACGTGGCTCCTGGTCAAGGGATGTCTTCTTTCCTCTaGACGGATGAAGTGATTCTG +
Preference number: 4 (lower is better)
Translates to: NNMLVEDSRCLHVAPGQGMSSFL*TDEVIL
Trigger: CAGAATCACTTCATCCGTGCAGAGGAAAGAAGACAT...CCCTTGACCAGGAGCCACGTGCAGACACCTGCTGTCTTCCACCAGCATGTTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115183.2
CDS TCA 90 bp AAGGTAGAGTGGGACCCCACAGGGGCATCGTCATTCATTCCTAACTaGCTTTGTCCTCTTCTGAAGTGCTCTCTCCTCTTCTTAAACCAT +
Preference number: 5 (lower is better)
Translates to: KVEWDPTGASSFIPN*LCPLLKCSLLFLNH
Trigger: ATGGTTTAAGAAGAGGAGAGAGCACTTCAGAAGAGGACAAAGTCAGTTAGGAATGAATGACGATGCCCCTGTGGGGTCCCACTCTACCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115183.2
CDS GCA 90 bp GTAAGACTGCCTGTGTCTTCCCACCATTCAACTTTTCCTTGTCCTTaGCAAGTCCCTCATGAAGTAGGTAGTTGGTGTTTTGATGCTCCA +
Preference number: 5 (lower is better)
Translates to: VRLPVSSHHSTFPCP*QVPHEVGSWCFDAP
Trigger: TGGAGCATCAAAACACCAACTACCTACTTCATGAGGGACTTGGCAAGGACAAGGAAAAGTTGAATGGTGGGAAGACACAGGCAGTCTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115183.2
CDS TCA 72 bp TGGGACCCCACAGGGGCATCGTCATTCATTCCTAACTaGCTTTGTCCTCTTCTGAAGTGCTCTCTCCTCTTC +
Preference number: 6 (lower is better)
Translates to: WDPTGASSFIPN*LCPLLKCSLLF
Trigger: GAAGAGGAGAGAGCACTTCAGAAGAGGACAAAGTCAGTTAGGAATGAATGACGATGCCCCTGTGGGGTCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115183.2