Pregenerated sensors for RHOX4B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071771

Ensembl transcript IDs: ENSMUST00000096458.5

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	ATTTATTTCACATACAAATGCTTAGGGAATAGAGATGCAATAACATaGTGGTGGAAGGCAGCAGGGGTCTGCACGTGGCTCCTGGTCAAG	+
Preference number: 1 (lower is better) Translates to: IYFTYKCLGNRDAIT*WWKAAGVCTWLLVK Trigger: CTTGACCAGGAGCCACGTGCAGACCCCTGCTGCCTTCCACCAGCATGTTATTGCATCTCTATTCCCTAAGCATTTGTATGTGAAATAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096458.5
3UTR CCA 72 bp	GCTGGTGGAAGGCAGCAGGGGTCTGCACGTGGCTCCTaGTCAAGGGTGGTACACCAGGCCTCCTGTGCCATC	+
Preference number: 3 (lower is better) Translates to: AGGRQQGSARGS*SRVVHQASCAI Trigger: GATGGCACAGGAGGCCTGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACCCCTGCTGCCTTCCACCAGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096458.5
3UTR CCA 72 bp	ATAACATGCTGGTGGAAGGCAGCAGGGGTCTGCACGTaGCTCCTGGTCAAGGGTGGTACACCAGGCCTCCTG	+
Preference number: 3 (lower is better) Translates to: ITCWWKAAGVCT*LLVKGGTPGLL Trigger: CAGGAGGCCTGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACCCCTGCTGCCTTCCACCAGCATGTTAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096458.5
3UTR CCA 72 bp	AAATGCTTAGGGAATAGAGATGCAATAACATGCTGGTaGAAGGCAGCAGGGGTCTGCACGTGGCTCCTGGTC	+
Preference number: 3 (lower is better) Translates to: KCLGNRDAITCW*KAAGVCTWLLV Trigger: GACCAGGAGCCACGTGCAGACCCCTGCTGCCTTCCACCAGCATGTTATTGCATCTCTATTCCCTAAGCATTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096458.5
3UTR CCA 72 bp	TACAAATGCTTAGGGAATAGAGATGCAATAACATGCTaGTGGAAGGCAGCAGGGGTCTGCACGTGGCTCCTG	+
Preference number: 3 (lower is better) Translates to: YKCLGNRDAITC*WKAAGVCTWLL Trigger: CAGGAGCCACGTGCAGACCCCTGCTGCCTTCCACCAGCATGTTATTGCATCTCTATTCCCTAAGCATTTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096458.5
CDS CCA 90 bp	ACAGCATCCCTGAGAACTGGCTCCTCTGGCAGCTTCTCCTCCTCCTaGGCACTGCCACTGGTGTCCTGGTCCTCTTGGTTGCTGTTATCC	+
Preference number: 5 (lower is better) Translates to: TASLRTGSSGSFSSS*ALPLVSWSSWLLLS Trigger: GGATAACAGCAACCAAGAGGACCAGGACACCAGTGGCAGTGCCCAGGAGGAGGAGAAGCTGCCAGAGGAGCCAGTTCTCAGGGATGCTGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096458.5
CDS CCA 90 bp	TGGAATAGGCTGCACTTTGTCTATGACCACAGCATCCCTGAGAACTaGCTCCTCTGGCAGCTTCTCCTCCTCCTGGGCACTGCCACTGGT	+
Preference number: 5 (lower is better) Translates to: WNRLHFVYDHSIPEN*LLWQLLLLLGTATG Trigger: ACCAGTGGCAGTGCCCAGGAGGAGGAGAAGCTGCCAGAGGAGCCAGTTCTCAGGGATGCTGTGGTCATAGACAAAGTGCAGCCTATTCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096458.5
CDS CCA 90 bp	CTTAATTCTTCTGCTTTGTCCCATTCCACTGCTGCGGCTCCGGACTaGCCCAGTACACTCTCTCCCTCATTTCTTCCCTCTCCATCCAGT	+
Preference number: 5 (lower is better) Translates to: LNSSALSHSTAAAPD*PSTLSPSFLPSPSS Trigger: ACTGGATGGAGAGGGAAGAAATGAGGGAGAGAGTGTACTGGGCCAGTCCGGAGCCGCAGCAGTGGAATGGGACAAAGCAGAAGAATTAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096458.5
CDS-3UTR CAA 90 bp	TTAGGGAATAGAGATGCAATAACATGCTGGTGGAAGGCAGCAGGGGTCTGCACGTCACACCTATCCATCTaGCCAGATGTCTTCTTTCCT	+
Preference number: 5 (lower is better) Translates to: LGNRDAITCWWKAAGVCTSHLSI*PDVFFP Trigger: AGGAAAGAAGACATCTGGCAAGATGGATAGGTGTGA...CGTGCAGACCCCTGCTGCCTTCCACCAGCATGTTATTGCATCTCTATTCCCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096458.5
CDS GCA 90 bp	GTAAGACTGTCTGTGTCTTCCCACCATTCAACTTTTCCTTGTCCTTaGCAAGTCCCTCATGAAGTAGGTAGTTGGTGTTTTGATGCTCCA	+
Preference number: 5 (lower is better) Translates to: VRLSVSSHHSTFPCP*QVPHEVGSWCFDAP Trigger: TGGAGCATCAAAACACCAACTACCTACTTCATGAGGGACTTGGCAAGGACAAGGAAAAGTTGAATGGTGGGAAGACACAGACAGTCTTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096458.5
CDS GCA 90 bp	CTTAAACCATGTCATAACTCTGGCTTCACTCACACCTATCCATCTTaGCAGATGTCTTCTTTCCTCTGCACGGATGAAGTGATTCTGCTG	+
Preference number: 5 (lower is better) Translates to: LKPCHNSGFTHTYPS*QMSSFLCTDEVILL Trigger: CAGCAGAATCACTTCATCCGTGCAGAGGAAAGAAGACATCTGGCAAGATGGATAGGTGTGAGTGAAGCCAGAGTTATGACATGGTTTAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096458.5
CDS-3UTR CAA 90 bp	TTCACATACAAATGCTTAGGGAATAGAGATGCAATAACATGCTGGTGGAAGGCAGGTGTCCTGGTCCTCTaGGTTGCTGTTATCCATGAG	+
Preference number: 5 (lower is better) Translates to: FTYKCLGNRDAITCWWKAGVLVL*VAVIHE Trigger: CTCATGGATAACAGCAACCAAGAGGACCAGGACACC...TGCCTTCCACCAGCATGTTATTGCATCTCTATTCCCTAAGCATTTGTATGTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096458.5
CDS-3UTR CAA 90 bp	TTCACATACAAATGCTTAGGGAATAGAGATGCAATAACATGCTGGTGGAAGGCATCCTGGTCCTCTTGGTaGCTGTTATCCATGAGGTCT	+
Preference number: 5 (lower is better) Translates to: FTYKCLGNRDAITCWWKASWSSW*LLSMRS Trigger: AGACCTCATGGATAACAGCAACCAAGAGGACCAGGA...TGCCTTCCACCAGCATGTTATTGCATCTCTATTCCCTAAGCATTTGTATGTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096458.5
CDS-3UTR CAA 90 bp	TTCACATACAAATGCTTAGGGAATAGAGATGCAATAACATGCTGGTGGAAGGCACCATTCAACTTTTCCTaGTCCTTGCCAAGTCCCTCA	+
Preference number: 5 (lower is better) Translates to: FTYKCLGNRDAITCWWKAPFNFS*SLPSPS Trigger: TGAGGGACTTGGCAAGGACAAGGAAAAGTTGAATGG...TGCCTTCCACCAGCATGTTATTGCATCTCTATTCCCTAAGCATTTGTATGTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096458.5
CDS-3UTR CAA 90 bp	TTCACATACAAATGCTTAGGGAATAGAGATGCAATAACATGCTGGTGGAAGGCACTTAATTCTTCTGCTTaGTCCCATTCCACTGCTGCG	+
Preference number: 5 (lower is better) Translates to: FTYKCLGNRDAITCWWKALNSSA*SHSTAA Trigger: CGCAGCAGTGGAATGGGACAAAGCAGAAGAATTAAG...TGCCTTCCACCAGCATGTTATTGCATCTCTATTCCCTAAGCATTTGTATGTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096458.5
CDS CAA 72 bp	GCAGCAGGCCCACCTTCTCCACTTAATTCTTCTGCTTaGTCCCATTCCACTGCTGCGGCTCCGGACTGGCCC	+
Preference number: 6 (lower is better) Translates to: AAGPPSPLNSSA*SHSTAAAPDWP Trigger: GGGCCAGTCCGGAGCCGCAGCAGTGGAATGGGACAAAGCAGAAGAATTAAGTGGAGAAGGTGGGCCTGCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096458.5
CDS TCA 72 bp	CACTGGTGTCCTGGTCCTCTTGGTTGCTGTTATCCATaGGGTCTGCATCACCAGCAGCAGGCCCACCTTCTC	+
Preference number: 6 (lower is better) Translates to: HWCPGPLGCCYP*GLHHQQQAHLL Trigger: GAGAAGGTGGGCCTGCTGCTGGTGATGCAGACCTCATGGATAACAGCAACCAAGAGGACCAGGACACCAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096458.5
CDS TCA 72 bp	TCCATCTTGCCAGATGTCTTCTTTCCTCTGCACGGATaGAGTGATTCTGCTGGAAAATGCGCTCCAGCTCCT	+
Preference number: 6 (lower is better) Translates to: SILPDVFFPLHG*SDSAGKCAPAP Trigger: AGGAGCTGGAGCGCATTTTCCAGCAGAATCACTTCATCCGTGCAGAGGAAAGAAGACATCTGGCAAGATGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096458.5
CDS TCA 72 bp	TGGGACCCCACAGGGGCATCATCATTCATTCCTAACTaGCTTTGTCCTCTTCTGAAGTGCTCTCTCCTCTTC	+
Preference number: 6 (lower is better) Translates to: WDPTGASSFIPN*LCPLLKCSLLF Trigger: GAAGAGGAGAGAGCACTTCAGAAGAGGACAAAGTCAGTTAGGAATGAATGATGATGCCCCTGTGGGGTCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096458.5