Pregenerated sensors for RHOX4A2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094945

Ensembl transcript IDs: ENSMUST00000179915.4

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	TTCACATACAAATGCTTAGGGAATAGAGATGCAATAACATGCTGGTaGAAGGCAGCAGGGGTCTGCACGTGGCTCCTGGTCAAGGGTGGT	+
Preference number: 1 (lower is better) Translates to: FTYKCLGNRDAITCW*KAAGVCTWLLVKGG Trigger: ACCACCCTTGACCAGGAGCCACGTGCAGACCCCTGCTGCCTTCCACCAGCATGTTATTGCATCTCTATTCCCTAAGCATTTGTATGTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179915.4
3UTR CCA 90 bp	TATTTCACATACAAATGCTTAGGGAATAGAGATGCAATAACATGCTaGTGGAAGGCAGCAGGGGTCTGCACGTGGCTCCTGGTCAAGGGT	+
Preference number: 1 (lower is better) Translates to: YFTYKCLGNRDAITC*WKAAGVCTWLLVKG Trigger: ACCCTTGACCAGGAGCCACGTGCAGACCCCTGCTGCCTTCCACCAGCATGTTATTGCATCTCTATTCCCTAAGCATTTGTATGTGAAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179915.4
CDS CCA 90 bp	AGCTTCTCCTCCTCCTGGGCACTGCCACTGGTGTCCTGGTCCTCTTaGTTGCTGTTATCCATGAGGTCTGCATCACCAGCAGCAGGCCCA	+
Preference number: 5 (lower is better) Translates to: SFSSSWALPLVSWSS*LLLSMRSASPAAGP Trigger: TGGGCCTGCTGCTGGTGATGCAGACCTCATGGATAACAGCAACCAAGAGGACCAGGACACCAGTGGCAGTGCCCAGGAGGAGGAGAAGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179915.4
CDS CCA 90 bp	TCCTCTGGCAGCTTCTCCTCCTCCTGGGCACTGCCACTGGTGTCCTaGTCCTCTTGGTTGCTGTTATCCATGAGGTCTGCATCACCAGCA	+
Preference number: 5 (lower is better) Translates to: SSGSFSSSWALPLVS*SSWLLLSMRSASPA Trigger: TGCTGGTGATGCAGACCTCATGGATAACAGCAACCAAGAGGACCAGGACACCAGTGGCAGTGCCCAGGAGGAGGAGAAGCTGCCAGAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179915.4
CDS CCA 90 bp	ACAGCATCCTTGAGAACTGGCTCCTCTGGCAGCTTCTCCTCCTCCTaGGCACTGCCACTGGTGTCCTGGTCCTCTTGGTTGCTGTTATCC	+
Preference number: 5 (lower is better) Translates to: TASLRTGSSGSFSSS*ALPLVSWSSWLLLS Trigger: GGATAACAGCAACCAAGAGGACCAGGACACCAGTGGCAGTGCCCAGGAGGAGGAGAAGCTGCCAGAGGAGCCAGTTCTCAAGGATGCTGT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179915.4
CDS CCA 90 bp	TGGAATAGGCTGCACTTTGTCTATGACCACAGCATCCTTGAGAACTaGCTCCTCTGGCAGCTTCTCCTCCTCCTGGGCACTGCCACTGGT	+
Preference number: 5 (lower is better) Translates to: WNRLHFVYDHSILEN*LLWQLLLLLGTATG Trigger: ACCAGTGGCAGTGCCCAGGAGGAGGAGAAGCTGCCAGAGGAGCCAGTTCTCAAGGATGCTGTGGTCATAGACAAAGTGCAGCCTATTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179915.4
CDS CCA 90 bp	CTTAATTCTTCTGCTTTGTCCCCTTCCACTGCTGCGGCTCCGGACTaGCCCAGTACACTCTCTCCCTCATTTCTTCCCTCTCCATCCAGT	+
Preference number: 5 (lower is better) Translates to: LNSSALSPSTAAAPD*PSTLSPSFLPSPSS Trigger: ACTGGATGGAGAGGGAAGAAATGAGGGAGAGAGTGTACTGGGCCAGTCCGGAGCCGCAGCAGTGGAAGGGGACAAAGCAGAAGAATTAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179915.4

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