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Pregenerated sensors for RHOX4A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079639

Ensembl transcript IDs: ENSMUST00000115194.5

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 72 bp GATGCAATAACATGCTGGTGGAAGGCAGCAGGGGTCTaGACGTGGCTCCTGGTCAAGGGTGGTACACCAGGC +
Preference number: 3 (lower is better)
Translates to: DAITCWWKAAGV*TWLLVKGGTPG
Trigger: GCCTGGTGTACCACCCTTGACCAGGAGCCACGTGCAGACCCCTGCTGCCTTCCACCAGCATGTTATTGCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115194.5
CDS GCA 90 bp GGCTTCACTCACACCTATCCATCTTGCCAGATGTCTTCTTTCCTCTaGACGGATGAAGTGATTCTGCTGGAAAATGCGCTCCAGCTCCTG +
Preference number: 5 (lower is better)
Translates to: GFTHTYPSCQMSSFL*TDEVILLENALQLL
Trigger: CAGGAGCTGGAGCGCATTTTCCAGCAGAATCACTTCATCCGTGCAGAGGAAAGAAGACATCTGGCAAGATGGATAGGTGTGAGTGAAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115194.5
CDS TCA 90 bp AAGGTAGAGTGGGACCCCACAGAGGCGTCATCATTCATTCCTAACTaGCTTTGTCCTCTTCTGAAGTGCTCTCTCCTCTTCTTAAACCAT +
Preference number: 5 (lower is better)
Translates to: KVEWDPTEASSFIPN*LCPLLKCSLLFLNH
Trigger: ATGGTTTAAGAAGAGGAGAGAGCACTTCAGAAGAGGACAAAGTCAGTTAGGAATGAATGATGACGCCTCTGTGGGGTCCCACTCTACCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115194.5
CDS GCA 90 bp CTTAAACCATCTCTTAACTCTGGCTTCACTCACACCTATCCATCTTaGCAGATGTCTTCTTTCCTCTGCACGGATGAAGTGATTCTGCTG +
Preference number: 5 (lower is better)
Translates to: LKPSLNSGFTHTYPS*QMSSFLCTDEVILL
Trigger: CAGCAGAATCACTTCATCCGTGCAGAGGAAAGAAGACATCTGGCAAGATGGATAGGTGTGAGTGAAGCCAGAGTTAAGAGATGGTTTAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115194.5
CDS CAA 72 bp GCAGCAGGCCCACCTTCTCCACTTAATTCTTCTGCTTaGTCCCCTTCCACTGCTGCGGCTCCGGACTGGCCC +
Preference number: 6 (lower is better)
Translates to: AAGPPSPLNSSA*SPSTAAAPDWP
Trigger: GGGCCAGTCCGGAGCCGCAGCAGTGGAAGGGGACAAAGCAGAAGAATTAAGTGGAGAAGGTGGGCCTGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115194.5
CDS CCA 72 bp TCTGCTTTGTCCCCTTCCACTGCTGCGGCTCCGGACTaGCCCAGTACACTCTCTCCCTCATTTCTTCCCTCT +
Preference number: 6 (lower is better)
Translates to: SALSPSTAAAPD*PSTLSPSFLPS
Trigger: AGAGGGAAGAAATGAGGGAGAGAGTGTACTGGGCCAGTCCGGAGCCGCAGCAGTGGAAGGGGACAAAGCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115194.5
CDS CAA 72 bp CTCCTCCTGGGCACTGCCACTGGTGTCCTGGTCCTCTaGGTTGCTGTTATCCATGAGGTCTGCATCACCAGC +
Preference number: 6 (lower is better)
Translates to: LLLGTATGVLVL*VAVIHEVCITS
Trigger: GCTGGTGATGCAGACCTCATGGATAACAGCAACCAAGAGGACCAGGACACCAGTGGCAGTGCCCAGGAGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115194.5
CDS CAA 72 bp TCCTGGGCACTGCCACTGGTGTCCTGGTCCTCTTGGTaGCTGTTATCCATGAGGTCTGCATCACCAGCAGCA +
Preference number: 6 (lower is better)
Translates to: SWALPLVSWSSW*LLSMRSASPAA
Trigger: TGCTGCTGGTGATGCAGACCTCATGGATAACAGCAACCAAGAGGACCAGGACACCAGTGGCAGTGCCCAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115194.5
CDS CAA 72 bp GGAATAGGCTGCACTTTGTCTATGACCACAGCATCCTaGAGAACTGGCTCCTCTGGCAGCTTCTCCTCCTCC +
Preference number: 6 (lower is better)
Translates to: GIGCTLSMTTAS*RTGSSGSFSSS
Trigger: GGAGGAGGAGAAGCTGCCAGAGGAGCCAGTTCTCAAGGATGCTGTGGTCATAGACAAAGTGCAGCCTATTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115194.5
CDS TCA 72 bp TGGGACCCCACAGAGGCGTCATCATTCATTCCTAACTaGCTTTGTCCTCTTCTGAAGTGCTCTCTCCTCTTC +
Preference number: 6 (lower is better)
Translates to: WDPTEASSFIPN*LCPLLKCSLLF
Trigger: GAAGAGGAGAGAGCACTTCAGAAGAGGACAAAGTCAGTTAGGAATGAATGATGACGCCTCTGTGGGGTCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115194.5
CDS GCA 72 bp CCTGTGTCTTCCCACCATTCAAATTTTCCTTGTCCTTaGCAAGTCCCTCATGAAGTAGGTAGTTGGTGTTTT +
Preference number: 6 (lower is better)
Translates to: PVSSHHSNFPCP*QVPHEVGSWCF
Trigger: AAAACACCAACTACCTACTTCATGAGGGACTTGGCAAGGACAAGGAAAATTTGAATGGTGGGAAGACACAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115194.5